RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17178
(384 letters)
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 228 bits (584), Expect = 3e-74
Identities = 94/126 (74%), Positives = 109/126 (86%)
Query: 236 ASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND 295
+ + F S PAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF D
Sbjct: 14 GTENLYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGD 73
Query: 296 RLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS 355
RLEEF INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL
Sbjct: 74 RLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLE 133
Query: 356 DQGHTL 361
D GHTL
Sbjct: 134 DSGHTL 139
Score = 223 bits (570), Expect = 4e-72
Identities = 92/122 (75%), Positives = 106/122 (86%), Gaps = 1/122 (0%)
Query: 53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
S PAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF
Sbjct: 21 QSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS 80
Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVR 171
INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D G +R
Sbjct: 81 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR 140
Query: 172 GS 173
G
Sbjct: 141 GL 142
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 227 bits (582), Expect = 9e-74
Identities = 66/121 (54%), Positives = 89/121 (73%)
Query: 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
++PAP ++G AV++G+ KEI L DY GKY+V FFYP DFTFVCPTEI+AF+D++EEF
Sbjct: 40 LLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEF 99
Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
+ N +V+A S DS ++HLAW N RK GGLG +KIPLL+D +IS YGV+ + G+
Sbjct: 100 NSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNA 159
Query: 361 L 361
Sbjct: 160 F 160
Score = 223 bits (570), Expect = 6e-72
Identities = 68/121 (56%), Positives = 90/121 (74%), Gaps = 1/121 (0%)
Query: 54 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
++PAP ++G AV++G+ KEI L DY GKY+V FFYP DFTFVCPTEI+AF+D++EEF+
Sbjct: 43 NRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR 102
Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRG 172
N +V+A S DS ++HLAW N RK GGLG +KIPLL+D +IS YGV+ + G RG
Sbjct: 103 NCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRG 162
Query: 173 S 173
Sbjct: 163 L 163
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 228 bits (583), Expect = 1e-73
Identities = 94/121 (77%), Positives = 107/121 (88%)
Query: 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
+SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+DR+ EF
Sbjct: 48 AKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEF 107
Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
INTEVVA SVDS FTHLAW+ TPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQGHT
Sbjct: 108 RAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHT 167
Query: 361 L 361
L
Sbjct: 168 L 168
Score = 223 bits (571), Expect = 8e-72
Identities = 93/122 (76%), Positives = 107/122 (87%), Gaps = 1/122 (0%)
Query: 53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
+SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+DR+ EF
Sbjct: 50 ISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRA 109
Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVR 171
INTEVVA SVDS FTHLAW+ TPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQG +R
Sbjct: 110 INTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLR 169
Query: 172 GS 173
G
Sbjct: 170 GL 171
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 226 bits (579), Expect = 1e-73
Identities = 76/121 (62%), Positives = 95/121 (78%)
Query: 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
+ KPAP ++ TAVVDG KE+KLSDY GKY+V FFYPLDFTFV PTEI+AF++R E+F
Sbjct: 5 ARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVAPTEIIAFSNRAEDF 64
Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
++ EV+ SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T ++S DYGV +D+G
Sbjct: 65 RKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIA 124
Query: 361 L 361
Sbjct: 125 Y 125
Score = 222 bits (567), Expect = 7e-72
Identities = 78/120 (65%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114
KPAP ++ TAVVDG KE+KLSDY GKY+V FFYPLDFTFV PTEI+AF++R E+F ++
Sbjct: 9 KPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLG 68
Query: 115 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRGS 173
EV+ SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T ++S DYGV +D+G RG
Sbjct: 69 CEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGL 128
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 227 bits (580), Expect = 2e-73
Identities = 81/121 (66%), Positives = 96/121 (79%)
Query: 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
P V++ AP+++GTAVV G+ KEI L D+ GKYLV FFYPLDFTFVCPTEI+AF+D+ EF
Sbjct: 27 PAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEF 86
Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
H +N EVVA SVDSHF+HLAW+NTPRK GGLG + I LLSDLT +IS DYGV L G
Sbjct: 87 HDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLA 146
Query: 361 L 361
L
Sbjct: 147 L 147
Score = 222 bits (567), Expect = 2e-71
Identities = 80/121 (66%), Positives = 96/121 (79%), Gaps = 1/121 (0%)
Query: 54 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
++ AP+++GTAVV G+ KEI L D+ GKYLV FFYPLDFTFVCPTEI+AF+D+ EFH +
Sbjct: 30 TQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV 89
Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRG 172
N EVVA SVDSHF+HLAW+NTPRK GGLG + I LLSDLT +IS DYGV L G +RG
Sbjct: 90 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 149
Query: 173 S 173
Sbjct: 150 L 150
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 227 bits (580), Expect = 2e-73
Identities = 62/130 (47%), Positives = 84/130 (64%)
Query: 232 MYYHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEIL 291
+ S + V K AP ++ TAVVDG E+ L Y GKY+V F PL FTFV PTEI+
Sbjct: 14 LVPRGSHMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEII 73
Query: 292 AFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG 351
AF++ ++F + +V+ AS DS ++ LAW N PRKEGGLG + IPLL+D H +S DYG
Sbjct: 74 AFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYG 133
Query: 352 VYLSDQGHTL 361
V + ++G L
Sbjct: 134 VLIEEEGVAL 143
Score = 221 bits (565), Expect = 2e-71
Identities = 61/122 (50%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
+ K AP ++ TAVVDG E+ L Y GKY+V F PL FTFV PTEI+AF++ ++F +
Sbjct: 25 VQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEE 84
Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVR 171
+V+ AS DS ++ LAW N PRKEGGLG + IPLL+D H +S DYGV + ++G +R
Sbjct: 85 QGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALR 144
Query: 172 GS 173
G
Sbjct: 145 GL 146
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 228 bits (582), Expect = 3e-73
Identities = 94/121 (77%), Positives = 108/121 (89%)
Query: 241 PFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
+SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF
Sbjct: 62 AKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEF 121
Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHT
Sbjct: 122 RSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHT 181
Query: 361 L 361
L
Sbjct: 182 L 182
Score = 223 bits (569), Expect = 2e-71
Identities = 93/122 (76%), Positives = 108/122 (88%), Gaps = 1/122 (0%)
Query: 53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
+SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF
Sbjct: 64 ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS 123
Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVR 171
INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D G +R
Sbjct: 124 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR 183
Query: 172 GS 173
G
Sbjct: 184 GL 185
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 223 bits (570), Expect = 2e-72
Identities = 59/126 (46%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Query: 237 SRAIPFVSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND 295
S ++ PAP + A++ +G K++ LS Y GKY+V FFYP+DFTFVCPTEI+ F+D
Sbjct: 2 SCGAAKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSD 61
Query: 296 RLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS 355
+ F +INTEV++ S DS ++HL W + RK+GGLG + IP+L+D T I+ YGV
Sbjct: 62 DAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDE 121
Query: 356 DQGHTL 361
D G
Sbjct: 122 DSGVAY 127
Score = 217 bits (555), Expect = 4e-70
Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 2/123 (1%)
Query: 53 LSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 111
L+ PAP + A++ +G K++ LS Y GKY+V FFYP+DFTFVCPTEI+ F+D + F
Sbjct: 8 LNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFA 67
Query: 112 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PV 170
+INTEV++ S DS ++HL W + RK+GGLG + IP+L+D T I+ YGV D G
Sbjct: 68 EINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAY 127
Query: 171 RGS 173
RG
Sbjct: 128 RGV 130
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 222 bits (568), Expect = 7e-72
Identities = 59/121 (48%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 242 FVSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
PAP + TA++ +G K++ L+ Y GK+LV FFYP+DFTFVCPTEI F+DR++EF
Sbjct: 7 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEF 66
Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
I EV+A S+DS ++HLAW + RK GGLG++ IP+L+D T I YGV + G
Sbjct: 67 SDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVA 126
Query: 361 L 361
Sbjct: 127 Y 127
Score = 218 bits (557), Expect = 3e-70
Identities = 61/122 (50%), Positives = 83/122 (68%), Gaps = 2/122 (1%)
Query: 54 SKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
PAP + TA++ +G K++ L+ Y GK+LV FFYP+DFTFVCPTEI F+DR++EF
Sbjct: 9 LHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD 68
Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVR 171
I EV+A S+DS ++HLAW + RK GGLG++ IP+L+D T I YGV + G R
Sbjct: 69 IGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYR 128
Query: 172 GS 173
G
Sbjct: 129 GL 130
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 211 bits (539), Expect = 9e-68
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 242 FVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
++ ++ A +G+ E+ D G++ VFFFYP DFTFV PTE+ D EE
Sbjct: 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQ 61
Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 361
++ +V + S D+HFTH AW ++ + K+K ++ D T ++ ++ D+G
Sbjct: 62 KLGVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLAD 118
Score = 207 bits (528), Expect = 5e-66
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114
++ A +G+ E+ D G++ VFFFYP DFTFV PTE+ D EE ++
Sbjct: 5 TKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG 64
Query: 115 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRGS 173
+V + S D+HFTH AW ++ + K+K ++ D T ++ ++ D+G R +
Sbjct: 65 VDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLADRAT 121
Query: 174 LL 175
+
Sbjct: 122 FV 123
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 211 bits (539), Expect = 3e-67
Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
Query: 241 PFVSKPAPFWQGTAV-VDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLE 298
V+K A + + + ++ + LS + G KY FYPL++TFVCPTEI+ FN ++
Sbjct: 25 SLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIK 84
Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
+F N E++ SVDS ++HLAW N P ++GG+G ++ L+SD+ IS +Y V L D
Sbjct: 85 DFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNV-LYDNS 143
Query: 359 HTL 361
L
Sbjct: 144 FAL 146
Score = 207 bits (528), Expect = 1e-65
Identities = 46/121 (38%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 55 KPAPFWQGTAV-VDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
K A + + + ++ + LS + G KY FYPL++TFVCPTEI+ FN +++F
Sbjct: 29 KKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFEN 88
Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRG 172
N E++ SVDS ++HLAW N P ++GG+G ++ L+SD+ IS +Y V + +RG
Sbjct: 89 KNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRG 148
Query: 173 S 173
Sbjct: 149 L 149
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 210 bits (536), Expect = 3e-67
Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 3/121 (2%)
Query: 243 VSKPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
AP ++ AV D E+ LSD+ GK Y++ +FYPLDFTFVCP+EI+A + L+ F
Sbjct: 2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSF 61
Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
+ N E++ SVDS FTHLAW TP +GG+G +K L+SD++ I+ Y V L ++
Sbjct: 62 KERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDV-LFNESVA 120
Query: 361 L 361
L
Sbjct: 121 L 121
Score = 209 bits (534), Expect = 6e-67
Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
Query: 53 LSKPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEF 110
AP ++ AV D E+ LSD+ GK Y++ +FYPLDFTFVCP+EI+A + L+ F
Sbjct: 2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSF 61
Query: 111 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPV 170
+ N E++ SVDS FTHLAW TP +GG+G +K L+SD++ I+ Y V ++ +
Sbjct: 62 KERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVAL 121
Query: 171 RGS 173
R
Sbjct: 122 RAF 124
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 210 bits (536), Expect = 6e-67
Identities = 59/123 (47%), Positives = 81/123 (65%), Gaps = 3/123 (2%)
Query: 241 PFVSKPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLE 298
+V K APF++ AV D E+ L+ + GK Y++ +FYPLDFTFVCP+EI+A + L+
Sbjct: 21 TYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALD 80
Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
FH+ N E++ SVDS +THLAW TP +GG+G +K LLSD+T IS DY V D
Sbjct: 81 AFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLF-DDS 139
Query: 359 HTL 361
+L
Sbjct: 140 VSL 142
Score = 208 bits (532), Expect = 2e-66
Identities = 58/121 (47%), Positives = 79/121 (65%), Gaps = 2/121 (1%)
Query: 55 KPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
K APF++ AV D E+ L+ + GK Y++ +FYPLDFTFVCP+EI+A + L+ FH+
Sbjct: 25 KEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE 84
Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRG 172
N E++ SVDS +THLAW TP +GG+G +K LLSD+T IS DY V D +R
Sbjct: 85 RNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRA 144
Query: 173 S 173
Sbjct: 145 F 145
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 204 bits (522), Expect = 3e-65
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 242 FVSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
+ ++ A G+ E+ +D GK+ + FYP DF+FVCPTE+ E
Sbjct: 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAEL 61
Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
++ EV + S D+HF H AW +G ++ ++ D + IS + V + G
Sbjct: 62 KKLGVEVYSVSTDTHFVHKAWHENS---PAVGSIEYIMIGDPSQTISRQFDVLNEETGLA 118
Query: 361 L 361
Sbjct: 119 D 119
Score = 200 bits (511), Expect = 2e-63
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 55 KPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 113
++ A G+ E+ +D GK+ + FYP DF+FVCPTE+ E ++
Sbjct: 5 TEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL 64
Query: 114 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-PVRG 172
EV + S D+HF H AW +G ++ ++ D + IS + V + G RG
Sbjct: 65 GVEVYSVSTDTHFVHKAWHENS---PAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRG 121
Query: 173 SLL 175
+ +
Sbjct: 122 TFI 124
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 205 bits (523), Expect = 4e-65
Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 4/122 (3%)
Query: 243 VSKPAPFWQGTAVVDGQL--KEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEE 299
V+K AP ++ AV+ + +LS GK ++ FF+P DFTFVCPTEI+AF+ R+++
Sbjct: 3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKD 62
Query: 300 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 359
FH+ V+ S+DS H AW NTP ++GG+G++ P+++D+T IS DY V ++
Sbjct: 63 FHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLF-EEAI 121
Query: 360 TL 361
L
Sbjct: 122 AL 123
Score = 202 bits (517), Expect = 2e-64
Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 3/122 (2%)
Query: 55 KPAPFWQGTAVVDGQL--KEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFH 111
K AP ++ AV+ + +LS GK ++ FF+P DFTFVCPTEI+AF+ R+++FH
Sbjct: 5 KLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFH 64
Query: 112 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVR 171
+ V+ S+DS H AW NTP ++GG+G++ P+++D+T IS DY V + +R
Sbjct: 65 EKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALR 124
Query: 172 GS 173
G+
Sbjct: 125 GA 126
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 192 bits (490), Expect = 3e-60
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 16/135 (11%)
Query: 239 AIPFVSKPAPFWQGTAVVDGQL------------KEIKLSDYYGKYLVFFFYPLDFTFVC 286
+ + P +Q TA++ G L I ++ GK+ V FF+P DFTFVC
Sbjct: 2 PLLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVC 61
Query: 287 PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 346
PTEI AF+ +EF + +++ S+DS F H W + L L P+LSD+ ++
Sbjct: 62 PTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQW---RAQHNDLKTLPFPMLSDIKREL 118
Query: 347 SLDYGVYLSDQGHTL 361
S GV L+ G
Sbjct: 119 SQAAGV-LNADGVAD 132
Score = 190 bits (484), Expect = 2e-59
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 55 KPAPFWQGTAVVDGQL------------KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILA 102
P +Q TA++ G L I ++ GK+ V FF+P DFTFVCPTEI A
Sbjct: 8 DQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAA 67
Query: 103 FNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
F+ +EF + +++ S+DS F H W + L L P+LSD+ ++S GV
Sbjct: 68 FSKLNDEFEDRDAQILGVSIDSEFAHFQW---RAQHNDLKTLPFPMLSDIKRELSQAAGV 124
Query: 163 YLSDQGPVRGSLL 175
+D R + +
Sbjct: 125 LNADGVADRVTFI 137
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 169 bits (431), Expect = 4e-51
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 52 NLSKPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 110
+L P + A + +L Y + + F +P DFT VC TE+ E+F
Sbjct: 4 HLGATFPNFTAKASGID--GDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDF 61
Query: 111 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPV 170
++N +++ S +S +H W+ + G L K +IP++ D + +++ + + +
Sbjct: 62 LKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDI 121
Query: 171 RGSLLST-AIFV 181
G L+ +F
Sbjct: 122 TGLPLTCRCLFF 133
Score = 168 bits (429), Expect = 6e-51
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
+ P + A + +L Y + + F +P DFT VC TE+ E+F
Sbjct: 5 LGATFPNFTAKASGID--GDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFL 62
Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
++N +++ S +S +H W+ + G L K +IP++ D + +++ + +
Sbjct: 63 KLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDI 121
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 162 bits (411), Expect = 6e-48
Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 239 AIPFVSKPAPFWQGTAVVDGQLKEIKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFND 295
+IP + + P + T IKL D+Y GK+ V F +P DFT VC TE ++F
Sbjct: 3 SIPLIGERFPEMEVTTD----HGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFAR 58
Query: 296 RLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS 355
R E+F ++ +++ SVDS F+H+ W + G+ ++ P+++D ++ G+ +
Sbjct: 59 RYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHA 117
Query: 356 DQG 358
+
Sbjct: 118 ESA 120
Score = 161 bits (410), Expect = 1e-47
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 53 LSKPAPFWQGTAVVDGQLKEIKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEE 109
+ + P + T IKL D+Y GK+ V F +P DFT VC TE ++F R E+
Sbjct: 7 IGERFPEMEVTTD----HGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYED 62
Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGP 169
F ++ +++ SVDS F+H+ W + G+ ++ P+++D ++ G+ ++
Sbjct: 63 FQRLGVDLIGLSVDSVFSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESAT 121
Query: 170 --VRG 172
VRG
Sbjct: 122 HTVRG 126
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 160 bits (406), Expect = 2e-47
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
+ AP ++ V I+ D+ G + + F +P DFT VC TE+ EF
Sbjct: 7 LGDVAPNFEANTTVG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFA 62
Query: 302 QINTEVVAASVDSHFTHLAWV---NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
+ N +++A S+DS HLAW N E KL P++ D ++++ G+ +
Sbjct: 63 KRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEK 122
Query: 359 HT 360
Sbjct: 123 DE 124
Score = 160 bits (406), Expect = 2e-47
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEF 110
L AP ++ V I+ D+ G + + F +P DFT VC TE+ EF
Sbjct: 6 LLGDVAPNFEANTTVG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEF 61
Query: 111 HQINTEVVAASVDSHFTHLAWV---NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ 167
+ N +++A S+DS HLAW N E KL P++ D ++++ G+ +
Sbjct: 62 AKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAE 121
Query: 168 GPVRGSLLST-AIFV 181
+G ++ +FV
Sbjct: 122 KDEKGMPVTARVVFV 136
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 160 bits (406), Expect = 2e-47
Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
+ + P ++ + + ++K D+ G + V F +P DFT V TE+ +F
Sbjct: 5 LGEVFPNFEADSTI----GKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFK 60
Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGL-GKLKIPLLSDLTHKISLDYGVYLSDQGHT 360
+ +++A S D+ H W + G+ G + P+++D T ++++ G+ D+ +
Sbjct: 61 KRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTS 120
Score = 160 bits (406), Expect = 3e-47
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 52 NLSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEF 110
L + P ++ + + ++K D+ G + V F +P DFT V TE+ +F
Sbjct: 4 TLGEVFPNFEADSTI----GKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDF 59
Query: 111 HQINTEVVAASVDSHFTHLAWVNTPRKEGGL-GKLKIPLLSDLTHKISLDYGVYLSDQGP 169
+ +++A S D+ H W + G+ G + P+++D T ++++ G+ D+
Sbjct: 60 KKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERT 119
Query: 170 VRGSLLST-AIFV 181
G L+ A+F+
Sbjct: 120 STGMPLTCRAVFI 132
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 144 bits (365), Expect = 3e-42
Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 15/123 (12%)
Query: 243 VSKPAP-FWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEF 300
V AP F + D + + L Y G K ++ F+PL FT +C E+ D L EF
Sbjct: 11 VGATAPDF----TLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEF 66
Query: 301 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQG 358
++ +A SV TH W PLLSD +S YGV+ G
Sbjct: 67 ENDDSAALAISVGPPPTHKIWATQ-------SGFTFPLLSDFWPHGAVSQAYGVFNEQAG 119
Query: 359 HTL 361
Sbjct: 120 IAN 122
Score = 142 bits (360), Expect = 2e-41
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 16/123 (13%)
Query: 55 KPAP-FWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
AP F + D + + L Y G K ++ F+PL FT +C E+ D L EF
Sbjct: 13 ATAPDF----TLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN 68
Query: 113 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQG-P 169
++ +A SV TH W PLLSD +S YGV+ G
Sbjct: 69 DDSAALAISVGPPPTHKIWATQ-------SGFTFPLLSDFWPHGAVSQAYGVFNEQAGIA 121
Query: 170 VRG 172
RG
Sbjct: 122 NRG 124
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 102 bits (256), Expect = 2e-26
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 243 VSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 301
+ + AP F + D +LK++KLS GK +V FYP FT VC E+ F D + +F+
Sbjct: 6 IGELAPDF----ELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFN 61
Query: 302 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
Q+N V+ SVD F++ A+ L +LSD ++ Y V
Sbjct: 62 QVNAVVLGISVDPPFSNKAFKE---HNK----LNFTILSDYNREVVKKYNVA 106
Score = 101 bits (255), Expect = 3e-26
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 67 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 126
D +LK++KLS GK +V FYP FT VC E+ F D + +F+Q+N V+ SVD F
Sbjct: 17 DTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPF 76
Query: 127 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
++ A+ L +LSD ++ Y V
Sbjct: 77 SNKAFKE---HNK----LNFTILSDYNREVVKKYNVA 106
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 96.9 bits (242), Expect = 2e-24
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 67 DGQLKEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
+ + + L + G+ V F+P F+ VC E+ F D++ + + N EV+A SVDS
Sbjct: 18 NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDS 77
Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRG 172
+ + + + L LLSD ++ Y VY D ++
Sbjct: 78 PWCLKKFKD---ENR----LAFNLLSDYNREVIKLYNVYHEDLKGLKM 118
Score = 95.8 bits (239), Expect = 6e-24
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 257 DGQLKEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
+ + + L + G+ V F+P F+ VC E+ F D++ + + N EV+A SVDS
Sbjct: 18 NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDS 77
Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 359
+ + + + L LLSD ++ Y VY D
Sbjct: 78 PWCLKKFKD---ENR----LAFNLLSDYNREVIKLYNVYHEDLKG 115
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex
aeolicus}
Length = 171
Score = 94.7 bits (236), Expect = 2e-23
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 10/117 (8%)
Query: 65 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
VV L+E + V P T VC TE FN+ + +V S+D
Sbjct: 32 VVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME--GVDVTVVSMDL 89
Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFV 181
F + + + + SD ++ YGV + + G ++G +L+ A+F+
Sbjct: 90 PFAQKRFCES------FNIQNVTVASDFRYRDMEKYGVLIGE-GALKG-ILARAVFI 138
Score = 88.5 bits (220), Expect = 3e-21
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
VV L+E + V P T VC TE FN+ + +V S+D
Sbjct: 32 VVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME--GVDVTVVSMDL 89
Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 356
F + + + + SD ++ YGV + +
Sbjct: 90 PFAQKRFCES------FNIQNVTVASDFRYRDMEKYGVLIGE 125
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 91.9 bits (229), Expect = 2e-22
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 65 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
+ L + L+D+ GK V P T +C T+ FN+ L NT V+ S+D
Sbjct: 27 LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDL 84
Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFV 181
F W G G +LSD H DY + +++ LL+ A+FV
Sbjct: 85 PFAQKRWC------GAEGLDNAIMLSDYFDHSFGRDYALLINEWH-----LLARAVFV 131
Score = 88.1 bits (219), Expect = 4e-21
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
+ L + L+D+ GK V P T +C T+ FN+ L NT V+ S+D
Sbjct: 27 LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDL 84
Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQG 358
F W G G +LSD H DY + +++
Sbjct: 85 PFAQKRWC------GAEGLDNAIMLSDYFDHSFGRDYALLINEWH 123
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI,
protein structur initiative, TB structural genomics
consortium, TBSGC; 1.75A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 1y25_A
Length = 175
Score = 90.0 bits (224), Expect = 1e-21
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 11/117 (9%)
Query: 65 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
+ G L I + GK ++ +P T VC T + F++ V+ S D
Sbjct: 29 LTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDE---RAAASGATVLCVSKDL 85
Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVRGSLLSTAIFV 181
F + G G + S DYGV ++D GP+ G LL+ AI V
Sbjct: 86 PFAQKRFC------GAEGTENVMPASAFRDSFGEDYGVTIAD-GPMAG-LLARAIVV 134
Score = 83.5 bits (207), Expect = 3e-19
Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 14/117 (11%)
Query: 241 PFVSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEE 299
P V PAP F + G L I + GK ++ +P T VC T + F++
Sbjct: 18 PAVGSPAPAF----TLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDE---R 70
Query: 300 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 356
V+ S D F + G G + S DYGV ++D
Sbjct: 71 AAASGATVLCVSKDLPFAQKRFC------GAEGTENVMPASAFRDSFGEDYGVTIAD 121
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET:
PG4; 1.96A {Staphylococcus aureus}
Length = 166
Score = 88.4 bits (220), Expect = 4e-21
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 15/118 (12%)
Query: 65 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
V+D L ++ L+DY GK + P T VC + FN + V+ S D
Sbjct: 31 VLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASKE---EGIVLTISADL 87
Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSDQGPVRGSLLSTAIFV 181
F W G + LSD +YGV + + LL+ A+FV
Sbjct: 88 PFAQKRWC------ASAGLDNVITLSDHRDLSFGENYGVVMEELR-----LLARAVFV 134
Score = 84.6 bits (210), Expect = 1e-19
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
V+D L ++ L+DY GK + P T VC + FN + V+ S D
Sbjct: 31 VLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASKE---EGIVLTISADL 87
Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSDQG 358
F W G + LSD +YGV + +
Sbjct: 88 PFAQKRWC------ASAGLDNVITLSDHRDLSFGENYGVVMEELR 126
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 88.6 bits (220), Expect = 6e-21
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 11/118 (9%)
Query: 65 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
+V L ++ LS + GK V +P T VC + FN E NT V+ S D
Sbjct: 63 LVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTVVLCISSDL 120
Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSDQGPVRGSLLSTAIFV 181
F + G + LS L YGV +++ GP+ G L + A+ V
Sbjct: 121 PFAQSRFCGA------EGLSNVITLSTLRGADFKQAYGVAITE-GPLAG-LTARAVVV 170
Score = 81.7 bits (202), Expect = 2e-18
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
+V L ++ LS + GK V +P T VC + FN E NT V+ S D
Sbjct: 63 LVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTVVLCISSDL 120
Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSD 356
F + G + LS L YGV +++
Sbjct: 121 PFAQSRFCGA------EGLSNVITLSTLRGADFKQAYGVAITE 157
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 85.8 bits (213), Expect = 3e-20
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 65 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
+V L ++ L+D+ K V +P T VC T + FN + + NT V+ S D
Sbjct: 28 LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADL 85
Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFV 181
F + G +S H + GV + GP+ G L S A+ V
Sbjct: 86 PFAQARFCGA------EGIENAKTVSTFRNHALHSQLGVDIQT-GPLAG-LTSRAVIV 135
Score = 79.7 bits (197), Expect = 5e-18
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 9/105 (8%)
Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
+V L ++ L+D+ K V +P T VC T + FN + + NT V+ S D
Sbjct: 28 LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADL 85
Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQG 358
F + G +S H + GV +
Sbjct: 86 PFAQARFCGA------EGIENAKTVSTFRNHALHSQLGVDIQTGP 124
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 83.1 bits (206), Expect = 3e-19
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 14/118 (11%)
Query: 65 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
V+ L+E L+D GK + P T VC + FN+ + + V S D
Sbjct: 29 VLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG--DVNVYTISADL 86
Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGPVRGSLLSTAIFV 181
F W G+ K+ LSD +GVY+ + LL+ ++FV
Sbjct: 87 PFAQARW----CGANGID--KVETLSDHRDMSFGEAFGVYIKELR-----LLARSVFV 133
Score = 79.2 bits (196), Expect = 8e-18
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 9/105 (8%)
Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
V+ L+E L+D GK + P T VC + FN+ + + V S D
Sbjct: 29 VLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG--DVNVYTISADL 86
Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQG 358
F W G+ K+ LSD +GVY+ +
Sbjct: 87 PFAQARW----CGANGID--KVETLSDHRDMSFGEAFGVYIKELR 125
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 80.3 bits (198), Expect = 1e-17
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 9/118 (7%)
Query: 65 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 124
+VD Q + L + + +L R + +++ +VDS
Sbjct: 33 LVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWPHLKLIVITVDS 92
Query: 125 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSDQGPVRGSLLSTAIFV 181
+ + G I LLS L + YGV +++ P+ G S AI +
Sbjct: 93 PSSLARARHE------HGLPNIALLSTLRGRDFHKRYGVLITE-YPLSG-YTSPAIIL 142
Score = 73.4 bits (180), Expect = 3e-15
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 7/103 (6%)
Query: 255 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 314
+VD Q + L + + +L R + +++ +VDS
Sbjct: 33 LVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWPHLKLIVITVDS 92
Query: 315 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSD 356
+ + G I LLS L + YGV +++
Sbjct: 93 PSSLARARHE------HGLPNIALLSTLRGRDFHKRYGVLITE 129
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 78.5 bits (194), Expect = 1e-17
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 71 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 130
+ L + G +LV +FYP D T TE L FN L EF + +++ S DS +H
Sbjct: 26 TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDN 85
Query: 131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
+ K+G PL+SD + + V
Sbjct: 86 FCA---KQG----FAFPLVSDGDEALCRAFDVI 111
Score = 78.5 bits (194), Expect = 1e-17
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 261 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320
+ L + G +LV +FYP D T TE L FN L EF + +++ S DS +H
Sbjct: 26 TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDN 85
Query: 321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
+ K+G PL+SD + + V
Sbjct: 86 FCA---KQG----FAFPLVSDGDEALCRAFDVI 111
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 77.8 bits (192), Expect = 3e-17
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 71 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 130
LSDY ++LV +FYP D T TE L FN L +F QIN V+ S DS +H +
Sbjct: 42 TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDS 101
Query: 131 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
+ K+G PL+SD + + V
Sbjct: 102 FCA---KQG----FTFPLVSDSDAILCKAFDVI 127
Score = 77.8 bits (192), Expect = 3e-17
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 261 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 320
LSDY ++LV +FYP D T TE L FN L +F QIN V+ S DS +H +
Sbjct: 42 TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDS 101
Query: 321 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
+ K+G PL+SD + + V
Sbjct: 102 FCA---KQG----FTFPLVSDSDAILCKAFDVI 127
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET: CIT;
2.15A {Sulfolobus solfataricus}
Length = 161
Score = 77.3 bits (191), Expect = 4e-17
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 71 KEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 129
++I LSDY GK+ +V +FYP D T E AF D + + V+ S D +H
Sbjct: 19 EKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHK 78
Query: 130 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGPVR 171
+ K L L+SD KI YG P R
Sbjct: 79 RFKE---KYK----LPFILVSDPDKKIRELYGAKGFI-LPAR 112
Score = 76.5 bits (189), Expect = 7e-17
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 261 KEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 319
++I LSDY GK+ +V +FYP D T E AF D + + V+ S D +H
Sbjct: 19 EKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHK 78
Query: 320 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
+ K L L+SD KI YG
Sbjct: 79 RFKE---KYK----LPFILVSDPDKKIRELYGA 104
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys
peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces
cerevisiae} SCOP: c.47.1.10
Length = 159
Score = 63.4 bits (155), Expect = 3e-12
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 71 KEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 128
I L + +VFF YP T + F D +E + V S DS +
Sbjct: 24 DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTSQ 82
Query: 129 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
+ + K+ L LLSD + G
Sbjct: 83 KKFQS---KQN----LPYHLLSDPKREFIGLLGA 109
Score = 63.4 bits (155), Expect = 3e-12
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 261 KEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 318
I L + +VFF YP T + F D +E + V S DS +
Sbjct: 24 DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTSQ 82
Query: 319 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
+ + K+ L LLSD + G
Sbjct: 83 KKFQS---KQN----LPYHLLSDPKREFIGLLGA 109
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.1 bits (158), Expect = 2e-11
Identities = 75/491 (15%), Positives = 132/491 (26%), Gaps = 192/491 (39%)
Query: 6 FNRALTITLTLTESQSLDHK-----TLTLTESQLSLQFKRWKIECTTFYS------KNLS 54
F++ L + LT E+ L+ L + + K ++ + + +
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL-IKNYITARIMAKRPFD 138
Query: 55 KPAP--FWQGT--------AVVDGQ------LKEIKLSDYYGKY--LVFFFYPLDFTFVC 96
K + ++ A+ GQ +E L D Y Y LV
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE--LRDLYQTYHVLVGDL--------- 187
Query: 97 PTEILAFNDRLEEFHQINTEVVAASVDSHFTH----LAWVNTPRKEGGLGKLKIPLLSDL 152
I + L E + + FT L W+ P P L
Sbjct: 188 ---IKFSAETLSELIR-----TTLDAEKVFTQGLNILEWLENPSN--------TPDKDYL 231
Query: 153 TH-KISLDYGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLL 211
IS P+ G ++ A Y +T+ + G+ G L S L G
Sbjct: 232 LSIPISC----------PLIG-VIQLA--HYVVTAKLLGFTPGELRSYLKG--------- 269
Query: 212 SACLVPVLVCATALVV-NFIAM-------YYHASRAIPFVSKPAPFWQGTAVVDGQ---- 259
+ LV IA + +AI + F+ G
Sbjct: 270 ------ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL-----FFIGVR---CYEAYP 315
Query: 260 ---LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND----RLEEF-HQINTEVVAAS 311
L L D L+ P+ +L+ ++ +++++ ++ N+ +
Sbjct: 316 NTSLPPSILEDS-----------LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL---P 361
Query: 312 VDSHFTHLAWVNTPRK----------------------EGGLGKLKIP------------ 337
++ VN + GL + +IP
Sbjct: 362 AGKQ-VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 338 ----------LLSDLTHKISLDYG--------------VYLSDQGHTLDKYCLECYKMVI 373
LL + I+ D VY + G L + I
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER-I 479
Query: 374 VYWFERGNCDW 384
V R W
Sbjct: 480 VDCIIRLPVKW 490
Score = 33.9 bits (77), Expect = 0.099
Identities = 36/236 (15%), Positives = 68/236 (28%), Gaps = 90/236 (38%)
Query: 97 PTEILAFND----RLEEF-HQINTEVVAASVDSHFTHLAWVNTPRK-------------- 137
P+ +L+ ++ +++++ ++ N+ + ++ VN +
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHL---PAGKQ-VEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 138 --------EGGLGKLKIP----------------------LLSDLTHKISLDYGVYLSDQ 167
GL + +IP LL + I+ D L
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD----LVKN 446
Query: 168 G-PVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLV-CATAL 225
+ I VY +G S L +LS + +V C L
Sbjct: 447 NVSFNAKDI--QIPVY---DTFDG-------SDL--------RVLSGSISERIVDCIIRL 486
Query: 226 VVNF-IAMYYHASRAIPF----VSKPAP----FWQGT--AVVDGQLKEIKLSDYYG 270
V + + A+ + F S GT V+ +I D YG
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 43.9 bits (104), Expect = 2e-05
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 16/117 (13%)
Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF----VCPTEILAFNDRLE 298
+ + AP + T DG K++ LS GK ++ L FT VC E+ +
Sbjct: 9 IGEMAPDFTITLT-DG--KQVTLSSLRGKVVM-----LQFTASWCGVCRKEMPFIEKDIW 60
Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS 355
H+ N + +D + + G + PL D I Y + +
Sbjct: 61 LKHKDNADFALIGIDRDEPLEKVLAFAKSTG----VTYPLGLDPGADIFAKYALRDA 113
Score = 43.5 bits (103), Expect = 2e-05
Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 16/115 (13%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF----VCPTEILAFNDRLEEF 110
+ AP + T DG K++ LS GK ++ L FT VC E+ +
Sbjct: 11 EMAPDFTITLT-DG--KQVTLSSLRGKVVM-----LQFTASWCGVCRKEMPFIEKDIWLK 62
Query: 111 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS 165
H+ N + +D + + G + PL D I Y + +
Sbjct: 63 HKDNADFALIGIDRDEPLEKVLAFAKSTG----VTYPLGLDPGADIFAKYALRDA 113
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 43.5 bits (103), Expect = 2e-05
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 15/114 (13%)
Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV----CPTEILAFNDRLE 298
AP G + G + L+D+ GKY++ +DF F C E
Sbjct: 5 TGSVAPAITGIDL-KG--NSVSLNDFKGKYVL-----VDFWFAGCSWCRKETPYLLKTYN 56
Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
F + S D W +E ++ L D + Y +
Sbjct: 57 AFKDKGFTIYGVSTDR--REEDWKKA-IEEDKSYWNQVLLQKDDVKDVLESYCI 107
Score = 43.5 bits (103), Expect = 2e-05
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 15/112 (13%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV----CPTEILAFNDRLEEF 110
AP G + G + L+D+ GKY++ +DF F C E F
Sbjct: 7 SVAPAITGIDL-KG--NSVSLNDFKGKYVL-----VDFWFAGCSWCRKETPYLLKTYNAF 58
Query: 111 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
+ S D W +E ++ L D + Y +
Sbjct: 59 KDKGFTIYGVSTDR--REEDWKKA-IEEDKSYWNQVLLQKDDVKDVLESYCI 107
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 42.3 bits (100), Expect = 5e-05
Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 19/114 (16%)
Query: 54 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLE 108
+ A + + +G K + L+D GKY+ +D T+ C E+ A + E
Sbjct: 7 NPSAASFSYPDI-NG--KTVSLADLKGKYIY-----IDVWATW-CGPCRGELPALKELEE 57
Query: 109 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
++ + V+ S D AW N K+ G I L Y +
Sbjct: 58 KYAGKDIHFVSLSCDK--NKKAWENMVTKDQLKG---IQLHMGTDRTFMDAYLI 106
Score = 42.3 bits (100), Expect = 5e-05
Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 19/114 (16%)
Query: 244 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLE 298
+ A + + +G K + L+D GKY+ +D T+ C E+ A + E
Sbjct: 7 NPSAASFSYPDI-NG--KTVSLADLKGKYIY-----IDVWATW-CGPCRGELPALKELEE 57
Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
++ + V+ S D AW N K+ G I L Y +
Sbjct: 58 KYAGKDIHFVSLSCDK--NKKAWENMVTKDQLKG---IQLHMGTDRTFMDAYLI 106
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 40.7 bits (96), Expect = 1e-04
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 21/116 (18%)
Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRL 297
AP + G +KLSD G + LDF ++ C N
Sbjct: 5 KGDKAPDFALPGK-TG---VVKLSDKTGSVVY-----LDFWASW-CGPCRQSFPWMNQMQ 54
Query: 298 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
++ +VVA ++D+ + + + + D + YGV
Sbjct: 55 AKYKAKGFQVVAVNLDA--KTGDAMKFLAQVP----AEFTVAFDPKGQTPRLYGVK 104
Score = 40.7 bits (96), Expect = 2e-04
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 109
AP + G +KLSD G + LDF ++ C N +
Sbjct: 7 DKAPDFALPGK-TG---VVKLSDKTGSVVY-----LDFWASW-CGPCRQSFPWMNQMQAK 56
Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
+ +VVA ++D+ + + + + D + YGV
Sbjct: 57 YKAKGFQVVAVNLDA--KTGDAMKFLAQVP----AEFTVAFDPKGQTPRLYGVK 104
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 39.2 bits (92), Expect = 4e-04
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 20/114 (17%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 109
AP + +G K I+LSD GK + L+F T+ C E ++ +
Sbjct: 4 SDAPNFVLEDT-NG--KRIELSDLKGKGVF-----LNFWGTW-CEPCKKEFPYMANQYKH 54
Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
F E+VA +V + +A N + G + P++ D ++ Y V
Sbjct: 55 FKSQGVEIVAVNVGE--SKIAVHNFMKSYG----VNFPVVLDTDRQVLDAYDVS 102
Score = 39.2 bits (92), Expect = 4e-04
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 20/114 (17%)
Query: 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 299
AP + +G K I+LSD GK + L+F T+ C E ++ +
Sbjct: 4 SDAPNFVLEDT-NG--KRIELSDLKGKGVF-----LNFWGTW-CEPCKKEFPYMANQYKH 54
Query: 300 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
F E+VA +V + +A N + G + P++ D ++ Y V
Sbjct: 55 FKSQGVEIVAVNVGE--SKIAVHNFMKSYG----VNFPVVLDTDRQVLDAYDVS 102
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 38.9 bits (91), Expect = 6e-04
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 21/118 (17%)
Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRL 297
+ K AP T G L D KY + FF+ C E D
Sbjct: 7 LGKKAPNLYMTDT-TG--TYRYLYDVQAKYTILFFWDSQCGH------CQQETPKLYDWW 57
Query: 298 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH--KISLDYGVY 353
+ +V AA+++ W+ R + G + D + + Y +Y
Sbjct: 58 LKNRAKGIQVYAANIER--KDEEWLKFIRSKKIGG---WLNVRDSKNHTDFKITYDIY 110
Score = 38.9 bits (91), Expect = 7e-04
Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 21/116 (18%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRLEE 109
K AP T G L D KY + FF+ C E D +
Sbjct: 9 KKAPNLYMTDT-TG--TYRYLYDVQAKYTILFFWDSQCGH------CQQETPKLYDWWLK 59
Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH--KISLDYGVY 163
+V AA+++ W+ R + G + D + + Y +Y
Sbjct: 60 NRAKGIQVYAANIER--KDEEWLKFIRSKKIGG---WLNVRDSKNHTDFKITYDIY 110
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 37.7 bits (88), Expect = 0.002
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 20/99 (20%)
Query: 71 KEIKLSDYYGKYLVFFFYPLDFTF----VCPTEILAFNDRLEEFHQINTEVVAASVDSHF 126
L+D GK ++ +DFT + LA + ++ E+ S+D
Sbjct: 26 NTRSLTDLKGKVVL-----IDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDG-- 78
Query: 127 THLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGV 162
W + L + D Y V
Sbjct: 79 DEHFWKTSAD------NLPWVCVRDANGAYSSYISLYNV 111
Score = 37.7 bits (88), Expect = 0.002
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 20/99 (20%)
Query: 261 KEIKLSDYYGKYLVFFFYPLDFTF----VCPTEILAFNDRLEEFHQINTEVVAASVDSHF 316
L+D GK ++ +DFT + LA + ++ E+ S+D
Sbjct: 26 NTRSLTDLKGKVVL-----IDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDG-- 78
Query: 317 THLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGV 352
W + L + D Y V
Sbjct: 79 DEHFWKTSAD------NLPWVCVRDANGAYSSYISLYNV 111
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 37.0 bits (86), Expect = 0.003
Identities = 12/114 (10%), Positives = 32/114 (28%), Gaps = 15/114 (13%)
Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFT----FVCPTEILAFNDRLE 298
AP + D + + G+Y + L+F + + +
Sbjct: 9 PGDLAPRIEFLGN-DA---KASFHNQLGRYTL-----LNFWAAYDAESRARNVQLANEVN 59
Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
+F + + S+D + T + + + ++ Y +
Sbjct: 60 KFGPDKIAMCSISMDE--KESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDL 111
Score = 37.0 bits (86), Expect = 0.003
Identities = 12/112 (10%), Positives = 32/112 (28%), Gaps = 15/112 (13%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFT----FVCPTEILAFNDRLEEF 110
AP + D + + G+Y + L+F + + + +F
Sbjct: 11 DLAPRIEFLGN-DA---KASFHNQLGRYTL-----LNFWAAYDAESRARNVQLANEVNKF 61
Query: 111 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
+ + S+D + T + + + ++ Y +
Sbjct: 62 GPDKIAMCSISMDE--KESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDL 111
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 37.3 bits (87), Expect = 0.003
Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 25/124 (20%)
Query: 236 ASRAIPFVSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TE 289
+ + AP F + + L+ Y GK ++ ++F ++ CP E
Sbjct: 10 SDAPLVRTGALAPNF----KLPTLSGENKSLAQYRGKIVL-----VNFWASW-CPYCRDE 59
Query: 290 ILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 349
+ + + ++ F + + V+A +V+ + R+ + LSD T ++
Sbjct: 60 MPSMDRLVKSFPKGDLVVLAVNVEK-----RFPEKYRRAP----VSFNFLSDATGQVQQR 110
Query: 350 YGVY 353
YG
Sbjct: 111 YGAN 114
Score = 36.2 bits (84), Expect = 0.006
Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 25/115 (21%)
Query: 55 KPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLE 108
AP F + + L+ Y GK ++ ++F ++ CP E+ + + ++
Sbjct: 19 ALAPNF----KLPTLSGENKSLAQYRGKIVL-----VNFWASW-CPYCRDEMPSMDRLVK 68
Query: 109 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
F + + V+A +V+ + R+ + LSD T ++ YG
Sbjct: 69 SFPKGDLVVLAVNVEK-----RFPEKYRRAP----VSFNFLSDATGQVQQRYGAN 114
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 36.5 bits (85), Expect = 0.003
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 71 KEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEEFHQINTEVVAASVDSH 125
K +LSDY GK + L F ++ C + ++ +E + S
Sbjct: 13 KTYRLSDYKGKKVY-----LKFWASW-CSICLASLPDTDEIAKEAGDDYVVLTVVSPGH- 65
Query: 126 FTHLAWVNTPRKE-GGLGKLKIPLLSDLTHKISLDYGVY 163
+ GL +P+L D + K+ YGV
Sbjct: 66 -KGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVR 103
Score = 36.5 bits (85), Expect = 0.003
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 261 KEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEEFHQINTEVVAASVDSH 315
K +LSDY GK + L F ++ C + ++ +E + S
Sbjct: 13 KTYRLSDYKGKKVY-----LKFWASW-CSICLASLPDTDEIAKEAGDDYVVLTVVSPGH- 65
Query: 316 FTHLAWVNTPRKE-GGLGKLKIPLLSDLTHKISLDYGVY 353
+ GL +P+L D + K+ YGV
Sbjct: 66 -KGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVR 103
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase,
methylysine binding, STR genomics consortium, SGC,
alternative promoter usage; HET: DNA BTB; 2.30A {Homo
sapiens}
Length = 154
Score = 36.7 bits (84), Expect = 0.004
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 58 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114
+W G V + ++ G V +F F+ VC +++ + FHQ
Sbjct: 31 SWWPGRIVSWWMTGRSRAAE--GTRWVMWFGDGKFSVVCVEKLMPLSSFCSAFHQAT 85
Score = 36.7 bits (84), Expect = 0.004
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 248 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 304
+W G V + ++ G V +F F+ VC +++ + FHQ
Sbjct: 31 SWWPGRIVSWWMTGRSRAAE--GTRWVMWFGDGKFSVVCVEKLMPLSSFCSAFHQAT 85
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 36.1 bits (84), Expect = 0.005
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 19/118 (16%)
Query: 240 IPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFN 294
+ SK AP + + G K + +D GK + ++F CP E+
Sbjct: 1 MSLDSKTAPAFSLPDL-HG--KTVSNADLQGKVTL-----INFWFPS-CPGCVSEMPKII 51
Query: 295 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
++ N +V+A + + + G L ++ D + +G
Sbjct: 52 KTANDYKNKNFQVLAVAQP-IDPIESVRQYVKDYG----LPFTVMYDADKAVGQAFGT 104
Score = 35.7 bits (83), Expect = 0.008
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 19/113 (16%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLEE 109
K AP + + G K + +D GK + ++F CP E+ +
Sbjct: 6 KTAPAFSLPDL-HG--KTVSNADLQGKVTL-----INFWFPS-CPGCVSEMPKIIKTAND 56
Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
+ N +V+A + + + G L ++ D + +G
Sbjct: 57 YKNKNFQVLAVAQP-IDPIESVRQYVKDYG----LPFTVMYDADKAVGQAFGT 104
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 35.3 bits (82), Expect = 0.008
Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 20/103 (19%)
Query: 66 VDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLEEFHQINTEVVAA 120
+DG + GK V L F + CPT E + + + EV
Sbjct: 13 LDG--HDFHGESLLGKPAV-----LWFWAPW-CPTCQGEA----PVVGQVAASHPEVTFV 60
Query: 121 SVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
V A K L+D + ++GV
Sbjct: 61 GVAGLDQVPAMQEFVNKYPVKT---FTQLADTDGSVWANFGVT 100
Score = 35.3 bits (82), Expect = 0.008
Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 20/103 (19%)
Query: 256 VDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLEEFHQINTEVVAA 310
+DG + GK V L F + CPT E + + + EV
Sbjct: 13 LDG--HDFHGESLLGKPAV-----LWFWAPW-CPTCQGEA----PVVGQVAASHPEVTFV 60
Query: 311 SVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
V A K L+D + ++GV
Sbjct: 61 GVAGLDQVPAMQEFVNKYPVKT---FTQLADTDGSVWANFGVT 100
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding
protein; 1.80A {Saccharomyces cerevisiae} SCOP:
c.47.1.10 PDB: 2b7j_A
Length = 200
Score = 35.9 bits (83), Expect = 0.010
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 16/94 (17%)
Query: 39 KRWKIECTTFYSKNLSKPA---PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF- 94
+R + + ++ KP+ PF + D E + GK+ + +F F+
Sbjct: 1 RRLETQKEAEANRGYGKPSLGGPF----HLEDMYGNEFTEKNLLGKFSIIYF---GFSNC 53
Query: 95 --VCPTE---ILAFNDRLEEFHQINTEVVAASVD 123
+CP E + + + L + I + + + D
Sbjct: 54 PDICPDELDKLGLWLNTLSSKYGITLQPLFITCD 87
Score = 34.3 bits (79), Expect = 0.036
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 256 VDGQLKEIKLSDYYGKYLVFFFYPLDFTF---VCPTE---ILAFNDRLEEFHQINTEVVA 309
D E + GK+ + +F F+ +CP E + + + L + I + +
Sbjct: 27 EDMYGNEFTEKNLLGKFSIIYF---GFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLF 83
Query: 310 ASVD 313
+ D
Sbjct: 84 ITCD 87
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 35.2 bits (81), Expect = 0.012
Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 18/134 (13%)
Query: 236 ASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEI 290
A+ V + + T + DG + I L++ G ++ L F + CP
Sbjct: 6 AAGHSEEVLEREASFSLTTI-DG--EVISLNNVGGDVVI-----LWFMAAW-CPSCVYMA 56
Query: 291 LAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 350
+ E++ +I V+A + K G +
Sbjct: 57 DLLDRLTEKYREI--SVIAIDFWT--AEALKALGLNKPGYPPPDTPEMFRKFIANYGDPS 112
Query: 351 GVYLSDQGHTLDKY 364
+ + D G ++K+
Sbjct: 113 WIMVMDDGSLVEKF 126
Score = 32.9 bits (75), Expect = 0.089
Identities = 16/126 (12%), Positives = 35/126 (27%), Gaps = 28/126 (22%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 109
+ + T + DG + I L++ G ++ L F + CP + E+
Sbjct: 15 EREASFSLTTI-DG--EVISLNNVGGDVVI-----LWFMAAW-CPSCVYMADLLDRLTEK 65
Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLG------------KLKIPLLSDLTHKIS 157
+ +I V+A + A ++ +
Sbjct: 66 YREI--SVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLV 123
Query: 158 LDYGVY 163
+ V
Sbjct: 124 EKFNVR 129
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 34.6 bits (80), Expect = 0.015
Identities = 21/114 (18%), Positives = 30/114 (26%), Gaps = 22/114 (19%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 109
+ T + G + GK V L F + CP E L +
Sbjct: 2 DERLQFTATTL-SG--APFDGASLQGKPAV-----LWFWTPW-CPFCNAEA----PSLSQ 48
Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
N V + + A + K L L+D I Y V
Sbjct: 49 VAAANPAVTFVGIATRADVGAMQSFVSKYN----LNFTNLNDADGVIWARYNVP 98
Score = 34.6 bits (80), Expect = 0.015
Identities = 21/114 (18%), Positives = 30/114 (26%), Gaps = 22/114 (19%)
Query: 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 299
+ T + G + GK V L F + CP E L +
Sbjct: 2 DERLQFTATTL-SG--APFDGASLQGKPAV-----LWFWTPW-CPFCNAEA----PSLSQ 48
Query: 300 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
N V + + A + K L L+D I Y V
Sbjct: 49 VAAANPAVTFVGIATRADVGAMQSFVSKYN----LNFTNLNDADGVIWARYNVP 98
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 34.2 bits (79), Expect = 0.025
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 21/114 (18%)
Query: 55 KPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLE 108
PAP F + + +KLSD G+ ++ ++F T+ CP EI +
Sbjct: 6 NPAPDF----TLNTLNGEVVKLSDLKGQVVI-----VNFWATW-CPPCREEIPSMMRLNA 55
Query: 109 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
++ S+D +A RK G +P+L D ++ YG
Sbjct: 56 AMAGKPFRMLCVSIDEG-GKVAVEEFFRKTG----FTLPVLLDADKRVGKLYGT 104
Score = 34.2 bits (79), Expect = 0.025
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 21/114 (18%)
Query: 245 KPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLE 298
PAP F + + +KLSD G+ ++ ++F T+ CP EI +
Sbjct: 6 NPAPDF----TLNTLNGEVVKLSDLKGQVVI-----VNFWATW-CPPCREEIPSMMRLNA 55
Query: 299 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
++ S+D +A RK G +P+L D ++ YG
Sbjct: 56 AMAGKPFRMLCVSIDEG-GKVAVEEFFRKTG----FTLPVLLDADKRVGKLYGT 104
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 34.3 bits (79), Expect = 0.029
Identities = 12/120 (10%), Positives = 36/120 (30%), Gaps = 14/120 (11%)
Query: 239 AIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAF 293
+ P + + + + K + + F ++ CP E+
Sbjct: 10 DAGTATVPHT---MSTMKTADNRPASVYLKKDKPTL-----IKFWASW-CPLCLSELGQA 60
Query: 294 NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
++ + ++ + + GL K+P+++D I+ + +
Sbjct: 61 EKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNIS 120
Score = 33.2 bits (76), Expect = 0.063
Identities = 12/115 (10%), Positives = 36/115 (31%), Gaps = 14/115 (12%)
Query: 54 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLE 108
+ P + + + + K + + F ++ CP E+ +
Sbjct: 15 TVPHT---MSTMKTADNRPASVYLKKDKPTL-----IKFWASW-CPLCLSELGQAEKWAQ 65
Query: 109 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
+ + ++ + + GL K+P+++D I+ + +
Sbjct: 66 DAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNIS 120
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural
genomics, montreal-kingsto bacterial structural genomics
initiative, BSGI; 1.70A {Bacillus subtilis} SCOP:
c.47.1.10 PDB: 1on4_A
Length = 174
Score = 34.3 bits (79), Expect = 0.031
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 71 KEIKLSDYYGKY-LVFFFYPLDFTF---VCPTEILAFNDRLEEFHQINTEVVAASV 122
K + L G+ L F FT +CP D ++ N +V S
Sbjct: 24 KNVSLESLKGEVWLADFI----FTNCETICPPMTAHMTDLQKKLKAENIDVRIISF 75
Score = 34.3 bits (79), Expect = 0.031
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 261 KEIKLSDYYGKY-LVFFFYPLDFTF---VCPTEILAFNDRLEEFHQINTEVVAASV 312
K + L G+ L F FT +CP D ++ N +V S
Sbjct: 24 KNVSLESLKGEVWLADFI----FTNCETICPPMTAHMTDLQKKLKAENIDVRIISF 75
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold,
electron transfer protein, metal binding protein,
electron transport; NMR {Thermus thermophilus}
Length = 172
Score = 33.5 bits (77), Expect = 0.050
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 47 TFYSKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF---VCPTE---I 100
TFY L P P ++G ++LS + K ++ FF FT VCPT +
Sbjct: 5 TFYGTRLLNPKP---VDFALEGPQGPVRLSQFQDKVVLLFF---GFTRCPDVCPTTLLAL 58
Query: 101 LAFNDRLEEFHQINTEVVAASVD 123
++L Q +V+ SVD
Sbjct: 59 KRAYEKLPPKAQERVQVIFVSVD 81
Score = 32.7 bits (75), Expect = 0.11
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 262 EIKLSDYYGKYLVFFFYPLDFTF---VCPTE---ILAFNDRLEEFHQINTEVVAASVD 313
++LS + K ++ FF FT VCPT + ++L Q +V+ SVD
Sbjct: 27 PVRLSQFQDKVVLLFF---GFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVD 81
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 33.2 bits (76), Expect = 0.052
Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 22/123 (17%)
Query: 53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRL 107
+S A G D L + ++ T+ C E+ A +
Sbjct: 1 MSLSADELAGWK--DN--TPQSLQSLKAPVRI-----VNLWATW-CGPCRKEMPAMSKWY 50
Query: 108 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ 167
+ + + ++V ++D+ ++ + P+ Y +
Sbjct: 51 KAQKKGSVDMVGIALDTSDNIGNFLKQ-------TPVSYPIWRYTGANSRNFMKTYGNTV 103
Query: 168 GPV 170
G +
Sbjct: 104 GVL 106
Score = 32.8 bits (75), Expect = 0.083
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 15/77 (19%)
Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRL 297
+S A G D L + ++ T+ C E+ A +
Sbjct: 1 MSLSADELAGWK--DN--TPQSLQSLKAPVRI-----VNLWATW-CGPCRKEMPAMSKWY 50
Query: 298 EEFHQINTEVVAASVDS 314
+ + + ++V ++D+
Sbjct: 51 KAQKKGSVDMVGIALDT 67
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 33.2 bits (76), Expect = 0.063
Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 21/117 (17%)
Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRL 297
+ K P G + E+++ GK + F+F P +
Sbjct: 4 LDKYLP---GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPP------ARGFTPQLIEFY 54
Query: 298 EEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGV 352
++FH+ N EVV + D + K L +P S+ K+S + V
Sbjct: 55 DKFHESKNFEVVFCTWDE--EEDGFAGYFAKMPWLA---VPFAQSEAVQKLSKHFNV 106
Score = 32.4 bits (74), Expect = 0.096
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 21/117 (17%)
Query: 53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRL 107
L K P G + E+++ GK + F+F P +
Sbjct: 4 LDKYLP---GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPP------ARGFTPQLIEFY 54
Query: 108 EEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGV 162
++FH+ N EVV + D + K L +P S+ K+S + V
Sbjct: 55 DKFHESKNFEVVFCTWDE--EEDGFAGYFAKMPWLA---VPFAQSEAVQKLSKHFNV 106
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural
genomics consortium, SGC, protein binding; HET: M3L;
1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A 1n27_A
Length = 94
Score = 31.9 bits (72), Expect = 0.073
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 58 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114
P W + + + KY +FFF + F+ P ++ ++ +++ + N
Sbjct: 20 PHWPARID---DIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGKPN 73
Score = 31.9 bits (72), Expect = 0.073
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 248 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 304
P W + + + KY +FFF + F+ P ++ ++ +++ + N
Sbjct: 20 PHWPARID---DIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGKPN 73
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain,
heparin-binding, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Length = 110
Score = 32.0 bits (72), Expect = 0.079
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 58 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 114
P W E + KY VFFF + F+ P ++ + + E+F + N
Sbjct: 34 PHWPARIDEM---PEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPN 87
Score = 32.0 bits (72), Expect = 0.079
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 248 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 304
P W E + KY VFFF + F+ P ++ + + E+F + N
Sbjct: 34 PHWPARIDEM---PEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPN 87
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 31.9 bits (73), Expect = 0.15
Identities = 18/122 (14%), Positives = 46/122 (37%), Gaps = 18/122 (14%)
Query: 236 ASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EI 290
A++A + + +G ++I + + G+ + L F ++ CP E+
Sbjct: 4 AAQAEEKQPAVPAVFLMKTI-EG--EDISIPNK-GQKTI-----LHFWTSW-CPPCKKEL 53
Query: 291 LAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 350
F + + ++V ++ + + V K L P++ D ++ +Y
Sbjct: 54 PQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKL---TFPIVLDSKGELMKEY 110
Query: 351 GV 352
+
Sbjct: 111 HI 112
Score = 30.4 bits (69), Expect = 0.44
Identities = 16/113 (14%), Positives = 42/113 (37%), Gaps = 18/113 (15%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLEE 109
+ + +G ++I + + G+ + L F ++ CP E+ F +
Sbjct: 13 AVPAVFLMKTI-EG--EDISIPNK-GQKTI-----LHFWTSW-CPPCKKELPQFQSFYDA 62
Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 162
+ ++V ++ + + V K L P++ D ++ +Y +
Sbjct: 63 HPSDSVKLVTVNLVNSEQNQQVVEDFIKANKL---TFPIVLDSKGELMKEYHI 112
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 31.6 bits (72), Expect = 0.17
Identities = 15/127 (11%), Positives = 25/127 (19%), Gaps = 28/127 (22%)
Query: 49 YSKNLS-KPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEIL 101
+KN A F + L + +Y + F C I
Sbjct: 2 NAKNRLGTKALNF----TYTLDSGVKGTLYQFPAEYTLLFINNPGCHA------CAEMIE 51
Query: 102 AFNDRL---EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 158
+V++ D W + D I
Sbjct: 52 GLKASPVINGFTAAKKLKVLSIYPDE--ELDEWKKHRNDFA----KEWTNGYDKELVIKN 105
Query: 159 --DYGVY 163
Y +
Sbjct: 106 KNLYDLR 112
Score = 29.6 bits (67), Expect = 0.79
Identities = 11/103 (10%), Positives = 20/103 (19%), Gaps = 22/103 (21%)
Query: 261 KEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRL---EEFHQINTEVVAASV 312
+ L + +Y + F C I +V++
Sbjct: 22 VKGTLYQFPAEYTLLFINNPGCHA------CAEMIEGLKASPVINGFTAAKKLKVLSIYP 75
Query: 313 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL--DYGVY 353
D W + D I Y +
Sbjct: 76 DE--ELDEWKKHRNDFA----KEWTNGYDKELVIKNKNLYDLR 112
>3me7_A Putative uncharacterized protein; electron transfer protein,
electron transport, structural GE PSI-2, protein
structure initiative; 1.50A {Aquifex aeolicus} PDB:
3me8_A
Length = 170
Score = 31.6 bits (72), Expect = 0.20
Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 6/55 (10%)
Query: 71 KEIKLSDYYGKYLVFFFYPLDFTF---VCPTEILAFNDRLEEFHQINTEVVAASV 122
E +L + GK ++ +T CP + + + + +
Sbjct: 19 NEFQLKNLKGKPIILSPI---YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITF 70
Score = 31.6 bits (72), Expect = 0.20
Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 6/55 (10%)
Query: 261 KEIKLSDYYGKYLVFFFYPLDFTF---VCPTEILAFNDRLEEFHQINTEVVAASV 312
E +L + GK ++ +T CP + + + + +
Sbjct: 19 NEFQLKNLKGKPIILSPI---YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITF 70
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 32.0 bits (73), Expect = 0.21
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 18/119 (15%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 109
P A D K KLSD+ GK L+ ++ T+ C E+ A ++ +
Sbjct: 38 LKLP---DLAFEDADGKPKKLSDFRGKTLL-----VNLWATW-CVPCRKEMPALDELQGK 88
Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 168
N EVVA ++D+ T KE L +L +D K+ D G
Sbjct: 89 LSGPNFEVVAINIDT--RDPEKPKTFLKEANLTRL--GYFNDQKAKVFQDLKAIGRALG 143
Score = 32.0 bits (73), Expect = 0.21
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 18/119 (15%)
Query: 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 299
P A D K KLSD+ GK L+ ++ T+ C E+ A ++ +
Sbjct: 38 LKLP---DLAFEDADGKPKKLSDFRGKTLL-----VNLWATW-CVPCRKEMPALDELQGK 88
Query: 300 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 358
N EVVA ++D+ T KE L +L +D K+ D G
Sbjct: 89 LSGPNFEVVAINIDT--RDPEKPKTFLKEANLTRL--GYFNDQKAKVFQDLKAIGRALG 143
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel
followed by five-helix bundle; HET: DNA; 1.80A {Mus
musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Length = 147
Score = 31.3 bits (70), Expect = 0.27
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 58 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
+W A+V K G V +F F+ + +++A + F+
Sbjct: 26 SWW--PAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQHFNL 78
Score = 31.3 bits (70), Expect = 0.27
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 248 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302
+W A+V K G V +F F+ + +++A + F+
Sbjct: 26 SWW--PAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQHFNL 78
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 30.8 bits (70), Expect = 0.31
Identities = 14/103 (13%), Positives = 23/103 (22%), Gaps = 22/103 (21%)
Query: 71 KEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRL---EEFHQINTEVVAASV 122
++S +Y + FFY C F + E V+A
Sbjct: 18 DNSRMSRLKAQYTMLFFYDPDCSN------CRKFEKLFAEIPAFVEMVENGTLRVLAIYP 71
Query: 123 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL--DYGVY 163
D W + + I Y +
Sbjct: 72 DE--NREEWATKAVYMP----QGWIVGWNKAGDIRTRQLYDIR 108
Score = 30.8 bits (70), Expect = 0.31
Identities = 14/103 (13%), Positives = 23/103 (22%), Gaps = 22/103 (21%)
Query: 261 KEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRL---EEFHQINTEVVAASV 312
++S +Y + FFY C F + E V+A
Sbjct: 18 DNSRMSRLKAQYTMLFFYDPDCSN------CRKFEKLFAEIPAFVEMVENGTLRVLAIYP 71
Query: 313 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL--DYGVY 353
D W + + I Y +
Sbjct: 72 DE--NREEWATKAVYMP----QGWIVGWNKAGDIRTRQLYDIR 108
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Length = 110
Score = 30.3 bits (68), Expect = 0.35
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 80 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 112
G + VFFF D+ +V + + + + F +
Sbjct: 47 GDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAE 79
Score = 30.3 bits (68), Expect = 0.35
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 270 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 302
G + VFFF D+ +V + + + + F +
Sbjct: 47 GDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAE 79
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 30.8 bits (70), Expect = 0.37
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLEE 109
PAP + G V DG K + GK + ++F T+ CP EI +
Sbjct: 12 TPAPSFSGVTV-DG--KPFSSASLKGKAYI-----VNFFATW-CPPCRSEIPDMVQVQKT 62
Query: 110 FHQINTEVVAASVD 123
+ V +V+
Sbjct: 63 WASRGFTFVGIAVN 76
Score = 30.8 bits (70), Expect = 0.37
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLEE 299
PAP + G V DG K + GK + ++F T+ CP EI +
Sbjct: 12 TPAPSFSGVTV-DG--KPFSSASLKGKAYI-----VNFFATW-CPPCRSEIPDMVQVQKT 62
Query: 300 FHQINTEVVAASVD 313
+ V +V+
Sbjct: 63 WASRGFTFVGIAVN 76
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding
protein, mitochondrial assembly factor, redox, nickel,
disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP:
c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A
2hrf_A 2hrn_A 1wp0_A
Length = 164
Score = 30.7 bits (70), Expect = 0.49
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 66 VDGQLKEIKLSDYYGKYLVFFFYPLDFTF---VCPTEI----LAFNDRLEEFHQINTEVV 118
+ DY G++L+ +F FT VCP E+ ++ + +
Sbjct: 9 TTHTGERKTDKDYLGQWLLIYF---GFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPL 65
Query: 119 AASVD 123
S+D
Sbjct: 66 FISID 70
Score = 30.7 bits (70), Expect = 0.49
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 256 VDGQLKEIKLSDYYGKYLVFFFYPLDFTF---VCPTEI----LAFNDRLEEFHQINTEVV 308
+ DY G++L+ +F FT VCP E+ ++ + +
Sbjct: 9 TTHTGERKTDKDYLGQWLLIYF---GFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPL 65
Query: 309 AASVD 313
S+D
Sbjct: 66 FISID 70
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 30.1 bits (68), Expect = 0.55
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 22/118 (18%)
Query: 53 LSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRL 107
L K P+ T V+ G +I L GK + F+F P D
Sbjct: 3 LKKFFPY--STNVLKGAAADIALPSLAGKTVFFYFSASWCPP------SRAFTPQLIDFY 54
Query: 108 EEFH-QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK--ISLDYGV 162
+ + N EV+ S D + + + K L D ++ + V
Sbjct: 55 KAHAEKKNFEVMLISWDE--SAEDFKDYYAKMPWLA----LPFEDRKGMEFLTTGFDV 106
Score = 29.3 bits (66), Expect = 1.1
Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 21/116 (18%)
Query: 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRLEE 299
K + V+ G +I L GK + F+F P D +
Sbjct: 4 KKFFPYSTN-VLKGAAADIALPSLAGKTVFFYFSASWCPP------SRAFTPQLIDFYKA 56
Query: 300 FH-QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK--ISLDYGV 352
+ N EV+ S D + + + K L D ++ + V
Sbjct: 57 HAEKKNFEVMLISWDE--SAEDFKDYYAKMPWLA----LPFEDRKGMEFLTTGFDV 106
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin
fold, metal transport, structural genomics,
spine2-complexes; NMR {Homo sapiens}
Length = 171
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 66 VDGQLKEIKLSDYYGKYLVFFFYPLDFTF---VCPTE---ILAFNDRLE-EFHQINTEVV 118
+D + + +D+ G++++ +F FT +CP E ++ +LE E + V
Sbjct: 12 LDHRGRARCKADFRGQWVLMYF---GFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPV 68
Query: 119 AASVD 123
+VD
Sbjct: 69 FITVD 73
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 256 VDGQLKEIKLSDYYGKYLVFFFYPLDFTF---VCPTE---ILAFNDRLE-EFHQINTEVV 308
+D + + +D+ G++++ +F FT +CP E ++ +LE E + V
Sbjct: 12 LDHRGRARCKADFRGQWVLMYF---GFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPV 68
Query: 309 AASVD 313
+VD
Sbjct: 69 FITVD 73
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 30.5 bits (69), Expect = 0.65
Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 25/130 (19%)
Query: 46 TTFYSKNLSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TE 99
FY + + P G ++ +G +I LSD+ + ++ L+ + C +E
Sbjct: 26 EIFYDEADRQQLPDIGGDSLMEEG--TQINLSDFENQVVI-----LNAWGQW-CAPCRSE 77
Query: 100 ILAFNDRLEEFH------QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 153
EE V+ +V + + + G L P + D
Sbjct: 78 SDDLQIIHEELQAAGNGDTPGGTVLGINVRDY-SRDIAQDFVTDNG----LDYPSIYDPP 132
Query: 154 HKISLDYGVY 163
+ G
Sbjct: 133 FMTAASLGGV 142
Score = 28.6 bits (64), Expect = 2.2
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 25/121 (20%)
Query: 245 KPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLE 298
+ P G ++ +G +I LSD+ + ++ L+ + C +E E
Sbjct: 35 QQLPDIGGDSLMEEG--TQINLSDFENQVVI-----LNAWGQW-CAPCRSESDDLQIIHE 86
Query: 299 EFH------QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 352
E V+ +V + + + G L P + D + G
Sbjct: 87 ELQAAGNGDTPGGTVLGINVRDY-SRDIAQDFVTDNG----LDYPSIYDPPFMTAASLGG 141
Query: 353 Y 353
Sbjct: 142 V 142
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 30.2 bits (68), Expect = 0.68
Identities = 22/123 (17%), Positives = 37/123 (30%), Gaps = 21/123 (17%)
Query: 237 SRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEIL 291
+ V+K + Q + GK + F+F P C
Sbjct: 18 GSHMSGVAKHLG---EALKLRKQADTADMDSLSGKTVFFYFSASWCPP------CRGFTP 68
Query: 292 AFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLD 349
+ E+ H N E++ AS D + K L IP ++ ++
Sbjct: 69 QLVEFYEKHHDSKNFEIILASWDE--EEDDFNAYYAKMPWLS---IPFANRNIVEALTKK 123
Query: 350 YGV 352
Y V
Sbjct: 124 YSV 126
Score = 28.6 bits (64), Expect = 2.0
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 18/105 (17%)
Query: 65 VVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRLEEFHQ-INTEVV 118
+ Q + GK + F+F P C + E+ H N E++
Sbjct: 33 KLRKQADTADMDSLSGKTVFFYFSASWCPP------CRGFTPQLVEFYEKHHDSKNFEII 86
Query: 119 AASVDSHFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGV 162
AS D + K L IP ++ ++ Y V
Sbjct: 87 LASWDE--EEDDFNAYYAKMPWLS---IPFANRNIVEALTKKYSV 126
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.77
Identities = 54/353 (15%), Positives = 113/353 (32%), Gaps = 117/353 (33%)
Query: 8 RALTITLTLTESQ----SLDHKTLTLTESQ-LSLQFKRWKIECTTFYSKNLSKPA----P 58
R +T L+ + SLDH ++TLT + SL ++ ++C ++L + P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKY-LDCRP---QDLPREVLTTNP 327
Query: 59 F---------------WQG---------TAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF 94
W T +++ L ++ ++Y + +P
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AH 386
Query: 95 VCPTEILA---FNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLG------KLK 145
+ PT +L+ F+ + + ++ S+ V KE + +LK
Sbjct: 387 I-PTILLSLIWFDVIKSDVMVVVNKLHKYSL---------VEKQPKESTISIPSIYLELK 436
Query: 146 IPLLSDLT-HKISLD-YGVYLSDQGPVRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGR 203
+ L ++ H+ +D Y + + + ++ Y YS +G
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSD------------DLIPPYLDQY----FYSHIG-- 478
Query: 204 AWIRHCLLSAC-------LVPVLVCATALVVNFIAMYYHASRAIPFVSKPAPFWQGTAVV 256
H L L ++ L F+ + I S W + +
Sbjct: 479 ---HH--LKNIEHPERMTLFRMVF----LDFRFL------EQKIRHDSTA---WNASGSI 520
Query: 257 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF-HQINTEVV 308
L+++K +Y Y P N + +F +I ++
Sbjct: 521 LNTLQQLK---FYKPY---------ICDNDPKYERLVNA-ILDFLPKIEENLI 560
Score = 30.6 bits (68), Expect = 0.97
Identities = 47/329 (14%), Positives = 93/329 (28%), Gaps = 108/329 (32%)
Query: 139 GGLGK--LKIPLLSDLTHKISLDYGVY---LSDQGPVRGSLLSTAIFVYALTSPVNGYAG 193
G GK + + + + +D+ ++ L + L +Y + +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 194 GALYSRLG---GRAWIRHCLLSA----CLVPVL--V------------CATAL------V 226
+ +L +A +R L S CL+ VL V C L V
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 227 VNFI--AMYYHASRAIPFVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYL----------V 274
+F+ A H I ++K + KYL V
Sbjct: 278 TDFLSAATTTH----ISLDHHSMTL------TPDEVKSL-----LLKYLDCRPQDLPREV 322
Query: 275 FFFYPLDFTFVCPTEILAFNDRLEEFHQIN----TEVVAASVDS--------HFTHLA-- 320
P + + I + + +N T ++ +S++ F L+
Sbjct: 323 LTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 321 --------------WVNTPRKEGGLGKLKIPLLSDLTHKISL-----------DYGVYLS 355
W + + + + ++ + HK SL +YL
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSD-------VMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 356 DQGHTLDKYCLECYKMVIVYWFERGNCDW 384
+ ++Y L +V Y +
Sbjct: 435 LKVKLENEYALH-RSIVDHYNIPKTFDSD 462
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 29.6 bits (67), Expect = 0.82
Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 21/117 (17%)
Query: 243 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRL 297
++K P G + + E+ L GK + +F P C +
Sbjct: 4 LAKYLP---GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPP------CRGFTPVLAEFY 54
Query: 298 EEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL-LSDLTHKISLDYGV 352
E+ H N EVV S D + + K L +P ++ +GV
Sbjct: 55 EKHHVAKNFEVVLISWDE--NESDFHDYYGKMPWLA---LPFDQRSTVSELGKTFGV 106
Score = 28.8 bits (65), Expect = 1.4
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 21/115 (18%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRLEE 109
K P G + + E+ L GK + +F P C + E+
Sbjct: 6 KYLP---GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPP------CRGFTPVLAEFYEK 56
Query: 110 FHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL-LSDLTHKISLDYGV 162
H N EVV S D + + K L +P ++ +GV
Sbjct: 57 HHVAKNFEVVLISWDE--NESDFHDYYGKMPWLA---LPFDQRSTVSELGKTFGV 106
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 29.2 bits (66), Expect = 1.1
Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 19/114 (16%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFF----YPLDFTFVCPTEILAFNDRLEEF 110
+P P + G + + + ++ F+ C E + R+ E
Sbjct: 9 EPLPDFLLLDP-KG--QPVTPATVSKPAVIVFWASWCTV------CKAEFPGLH-RVAEE 58
Query: 111 HQINTEVVAASV-DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 163
+ V++ D+ L ++ K + D H+++ + V
Sbjct: 59 TGVPFYVISREPRDTREVVLEYM----KTYPRFIPLLASDRDRPHEVAARFKVL 108
Score = 29.2 bits (66), Expect = 1.1
Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 19/114 (16%)
Query: 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFF----YPLDFTFVCPTEILAFNDRLEEF 300
+P P + G + + + ++ F+ C E + R+ E
Sbjct: 9 EPLPDFLLLDP-KG--QPVTPATVSKPAVIVFWASWCTV------CKAEFPGLH-RVAEE 58
Query: 301 HQINTEVVAASV-DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 353
+ V++ D+ L ++ K + D H+++ + V
Sbjct: 59 TGVPFYVISREPRDTREVVLEYM----KTYPRFIPLLASDRDRPHEVAARFKVL 108
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 29.2 bits (66), Expect = 1.3
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 36/126 (28%)
Query: 243 VSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF-TFVCPT---EILAFNDRL 297
+ +P P A ++G + + K + + F + C + N
Sbjct: 3 LRQPMPELTGEKAWLNG--EVTREQLIGEKPTL-----IHFWSISCHLCKEAMPQVN-EF 54
Query: 298 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI-----------PLLSDLTHKI 346
+ +Q VVA V+ PR E L KI P+ D H +
Sbjct: 55 RDKYQDQLNVVA------------VHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHAL 102
Query: 347 SLDYGV 352
+ +
Sbjct: 103 TDAFEN 108
Score = 28.4 bits (64), Expect = 2.0
Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 36/124 (29%)
Query: 55 KPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF-TFVCPT---EILAFNDRLEE 109
+P P A ++G + + K + + F + C + N +
Sbjct: 5 QPMPELTGEKAWLNG--EVTREQLIGEKPTL-----IHFWSISCHLCKEAMPQVN-EFRD 56
Query: 110 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI-----------PLLSDLTHKISL 158
+Q VVA V+ PR E L KI P+ D H ++
Sbjct: 57 KYQDQLNVVA------------VHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTD 104
Query: 159 DYGV 162
+
Sbjct: 105 AFEN 108
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 29.0 bits (65), Expect = 1.6
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 50 SKNLSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCP 97
S + P V+ + + D GK +V F +CP
Sbjct: 2 SSLDNAPLLELDVQEWVNH--EGLSNEDLRGKVVVVEV----FQMLCP 43
Score = 29.0 bits (65), Expect = 1.8
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCP 287
P V+ + + D GK +V F +CP
Sbjct: 7 APLLELDVQEWVNH--EGLSNEDLRGKVVVVEV----FQMLCP 43
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 29.6 bits (66), Expect = 1.8
Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 21/118 (17%)
Query: 71 KEIKLSDYYGKYLVFFFYPLDF-TFVCPT---EILAFNDRLEEFHQINTEVVAASVDSHF 126
K I L GK ++ +DF + C I + + V+ +
Sbjct: 73 KPIDLKSLRGKVVL-----IDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPE-Y 126
Query: 127 THLAWVNTPRKEGGLGKLKI--PLLSDLTHKISLDYGV------YLSD-QGPVRGSLL 175
K G L I P+ D + +Y YL D G VR
Sbjct: 127 AFEKVPGNVAK--GAANLGISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKF 182
Score = 29.6 bits (66), Expect = 1.9
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 14/98 (14%)
Query: 261 KEIKLSDYYGKYLVFFFYPLDF-TFVCPT---EILAFNDRLEEFHQINTEVVAASVDSHF 316
K I L GK ++ +DF + C I + + V+ +
Sbjct: 73 KPIDLKSLRGKVVL-----IDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPE-Y 126
Query: 317 THLAWVNTPRKEGGLGKLKI--PLLSDLTHKISLDYGV 352
K G L I P+ D + +Y
Sbjct: 127 AFEKVPGNVAK--GAANLGISYPIALDNNYATWTNYRN 162
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural
genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 28.2 bits (63), Expect = 3.1
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 55 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCP 97
AP Q + ++ L+D GK +V F +CP
Sbjct: 4 MKAPELQIQQWFNSA-TDLTLADLRGKVIVIEA----FQMLCP 41
Score = 28.2 bits (63), Expect = 3.1
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 245 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCP 287
AP Q + ++ L+D GK +V F +CP
Sbjct: 4 MKAPELQIQQWFNSA-TDLTLADLRGKVIVIEA----FQMLCP 41
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP,
chromatin, beta-barrel; NMR {Schizosaccharomyces pombe}
SCOP: b.34.9.2
Length = 109
Score = 26.1 bits (57), Expect = 9.3
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 58 PFWQGTAVVDGQLKEIKLSDYYGK----YLVFFFYPLDFTFVCPTEILAFND 105
P+W V + ++ + + Y V FF ++ + +
Sbjct: 21 PWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTS 72
Score = 26.1 bits (57), Expect = 9.3
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 248 PFWQGTAVVDGQLKEIKLSDYYGK----YLVFFFYPLDFTFVCPTEILAFND 295
P+W V + ++ + + Y V FF ++ + +
Sbjct: 21 PWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTS 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.439
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,947,389
Number of extensions: 352151
Number of successful extensions: 1001
Number of sequences better than 10.0: 1
Number of HSP's gapped: 878
Number of HSP's successfully gapped: 166
Length of query: 384
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 289
Effective length of database: 4,049,298
Effective search space: 1170247122
Effective search space used: 1170247122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.2 bits)