Query psy17179
Match_columns 533
No_of_seqs 162 out of 635
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 23:52:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278|consensus 100.0 5E-125 1E-129 996.2 33.8 404 9-533 96-628 (628)
2 KOG1277|consensus 100.0 2E-114 4E-119 896.6 28.8 407 9-533 96-593 (593)
3 PF02990 EMP70: Endomembrane p 100.0 3.5E-99 8E-104 824.9 25.7 364 9-491 41-521 (521)
4 KOG1278|consensus 99.7 7.1E-19 1.5E-23 188.6 2.4 74 253-326 464-537 (628)
5 KOG1277|consensus 99.7 3.4E-17 7.3E-22 172.3 4.3 79 245-323 421-499 (593)
6 PF02990 EMP70: Endomembrane p 99.5 1.2E-15 2.5E-20 168.0 0.3 72 253-324 399-470 (521)
7 PRK09546 zntB zinc transporter 29.5 27 0.00059 36.5 1.4 23 343-365 267-289 (324)
8 TIGR00383 corA magnesium Mg(2+ 29.0 85 0.0018 32.4 4.9 27 221-247 255-281 (318)
9 TIGR02973 nitrate_rd_NapE peri 25.2 36 0.00079 25.7 1.0 35 180-214 2-36 (42)
10 PF12823 DUF3817: Domain of un 25.0 21 0.00045 31.0 -0.4 25 268-292 62-86 (92)
11 PF12823 DUF3817: Domain of un 23.9 50 0.0011 28.7 1.8 25 384-408 62-86 (92)
12 PF08055 Trp_leader1: Tryptoph 22.9 28 0.0006 21.3 -0.0 8 455-462 6-13 (18)
13 PRK09546 zntB zinc transporter 22.5 1.4E+02 0.0031 31.1 5.2 27 222-248 262-288 (324)
14 PF09788 Tmemb_55A: Transmembr 21.8 1.4E+02 0.0031 30.8 4.7 38 445-484 217-254 (256)
15 PF09183 DUF1947: Domain of un 21.4 70 0.0015 26.4 2.0 22 23-44 4-25 (65)
16 PF06796 NapE: Periplasmic nit 21.4 40 0.00086 27.0 0.6 36 179-214 14-49 (56)
17 PF06570 DUF1129: Protein of u 21.3 1.9E+02 0.0041 28.3 5.5 26 453-478 140-166 (206)
18 TIGR02972 TMAO_torE trimethyla 20.7 40 0.00087 26.0 0.5 36 179-214 6-41 (47)
No 1
>KOG1278|consensus
Probab=100.00 E-value=5.3e-125 Score=996.23 Aligned_cols=404 Identities=39% Similarity=0.753 Sum_probs=375.4
Q ss_pred hhccccccccccccccCHHHHHHHHHHHHcccEEEEEEeCccceeeecccc-cc--------------cCCceeEeecce
Q psy17179 9 SELNNIAKTTYCGTRLDEEKLKAFIYAVKNHYWYQMYIDDLPIWGIVGEVE-EL--------------SDHTNYYLWTHK 73 (533)
Q Consensus 9 ~m~~n~~C~~LC~~~lt~~~~k~l~~~I~~~Y~~~~iIDnLPv~~~iG~~~-~~--------------~~~~k~yL~NHl 73 (533)
+|++|++|+.+|+.++++|+++.++|+|+++|++||++||||++......+ ++ .+++++|++||+
T Consensus 96 ~m~e~~~C~~lC~~k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~~~~~~~y~~GfplG~~~~~~~~~~y~~NHl 175 (628)
T KOG1278|consen 96 KMLENQPCETLCATKLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERSDDGKVYYGTGFPLGFKGPKDEDKYYLHNHL 175 (628)
T ss_pred ecccCCcchhhhcccCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeecCCCceEeccCccceeccCCCccceeEeeeE
Confidence 699999999999999999999999999999999999999999886643322 11 046789999999
Q ss_pred EEEEEEeC-----CeEEEEEeecCccc------------c----------ccC--CceEEEEEEEEEeecCCCccchhhh
Q psy17179 74 KFDIGYNG-----DRIVDVNLTSENKI------------L----------LEN--NAQIKFTYEVNWRPSNIKFEHRFDK 124 (533)
Q Consensus 74 ~F~I~Yn~-----~rIVgf~V~p~s~~------------~----------l~~--~~~I~FTYSV~W~~S~v~w~sRwD~ 124 (533)
+|+|+||+ +|||||||+|.|.+ + +++ ++++.|||||+|+|||++|++|||.
T Consensus 176 ~~~i~yH~~~~~~~riVgfeV~P~Si~~~~~~~~~~~~~~~c~~~~~~~~~~e~~~~~i~fTYsV~f~esdi~WasRWD~ 255 (628)
T KOG1278|consen 176 DFVIRYHRDDNDKYRIVGFEVKPVSIKHEHEKGDSKNSLPTCSIPEKPLELDEGEETEIVFTYSVKFEESDIKWASRWDY 255 (628)
T ss_pred EEEEEEEecCCCceEEEEEEEEeeeeecccCCCcccccCCcccCCCCccccCCCCceEEEEEEEEEEEeccCcchhhHHH
Confidence 99999995 49999999996631 0 122 3569999999999999999999999
Q ss_pred hcCCCCcccchhhHHHHH--------------------------------------------------------------
Q psy17179 125 YLDPTFFQHRGLQHLFGY-------------------------------------------------------------- 142 (533)
Q Consensus 125 YL~~s~~~~~I~~HWfSl-------------------------------------------------------------- 142 (533)
||+ +.+.|| ||||+
T Consensus 256 yL~--m~~~qI--hWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~~~d~~Ee~GWKLVhGDVFR~P~~~~lLs 331 (628)
T KOG1278|consen 256 YLH--MEDVQI--HWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDLDDDAQEESGWKLVHGDVFRPPRNSMLLS 331 (628)
T ss_pred Hhc--CCCCce--EEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccchhhhhhhcceEEeecccccCCCCCeEEE
Confidence 997 457899 99992
Q ss_pred ------------------Hhhh-----cccchHHHHHHHHHHhhcCcchhhHHHHHHhhCCccceeecccccchhhHHHH
Q psy17179 143 ------------------FSVL-----MGRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVC 199 (533)
Q Consensus 143 ------------------lsaL-----~~rG~llt~~i~ly~~~g~~aGYvS~rlYk~~~g~~W~~~~~~t~~~~p~~~~ 199 (533)
|+++ ++||+|+|+++++|+++|++|||+|+|+||+++|++||+++++|++++||+++
T Consensus 332 v~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk~~~~lta~l~PGivf 411 (628)
T KOG1278|consen 332 VLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWKRNAILTAFLFPGIVF 411 (628)
T ss_pred EEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcchhhHHhhhhhcchHHH
Confidence 2222 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCccchhHHHHHHHHHHHhhccchhhhhhcccccCCCCCCCcccCCCCCCCCCCcccchhhHHhh
Q psy17179 200 ATALVVNFIAMYYHASRAIPFGTMVAVACICLFIILPLTLVGAVLGRNLSGQQDNPCRVNAVPRPIPEKKWFMEPLVIIL 279 (533)
Q Consensus 200 ~~~~~~n~~~~~~~ss~a~pf~t~~~l~~lw~~i~~PL~~~G~~~g~~~~~~~e~Pv~~n~ipr~Ip~~~wy~~~~~~~l 279 (533)
++++++|++.|+++||+|+||+|++++++|||+||+||+++|||+|+|+
T Consensus 412 ~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk------------------------------- 460 (628)
T KOG1278|consen 412 AIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKK------------------------------- 460 (628)
T ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccC-------------------------------
Confidence 9999999999999999999999999999999999999999988888774
Q ss_pred hccccCceeeeeeeeeeehhhhhhhhhhhhhHHHHHHHHHHHHhccccccccccccccchhhhhhhhhhhcccccccceE
Q psy17179 280 LGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTFAPTSYSTLKTTDGTMVAVACICLFIILPLTLVGAV 359 (533)
Q Consensus 280 l~g~Lpf~~~fi~l~~~~~~~~~~~~~~~~g~~~~~~~il~i~~~~~~s~~~~~~~~~t~~~~~~lw~~i~~Pl~~~G~~ 359 (533)
T Consensus 461 -------------------------------------------------------------------------------- 460 (628)
T KOG1278|consen 461 -------------------------------------------------------------------------------- 460 (628)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeecCCCCCCCcccCCCCCCCCCCCCchhhHHHHHhccccchhhHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy17179 360 LGRNLSGQQDNPCRVNAVPRPIPEKKWFMEPLVIILLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVT 439 (533)
Q Consensus 360 ~g~~~~~~~~~P~r~n~ipR~IP~q~wy~~~~~~~l~~GilPF~~i~~el~~~f~siw~~~~y~~~~~L~~~~~il~~~~ 439 (533)
++.|+|+||||||||||+||||++++..+++||++||++|++||+++++|+|.+++||+|||||++++||+++|
T Consensus 461 ------~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtc 534 (628)
T KOG1278|consen 461 ------PAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTC 534 (628)
T ss_pred ------CCCCCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccccCCcccchhccccchhHHHHHHhhheeeeeeeeecccchhhhHHHHHHHHHHHHHHhhcchHHHHH
Q psy17179 440 VCVTIVCTYFLLNAEDYRWQWTSFLAAYSTSFYVYMYSFYYFFFKTKMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGT 519 (533)
Q Consensus 440 ~~~si~~~y~~l~~e~y~W~W~sf~~~~s~~~y~~~ys~~y~~~~~~~~~~~~~~~y~~y~~~~~~~~~l~~g~igf~~s 519 (533)
+|+||++||+|||+||||||||||++||++|+|+|+||++|+++|++++|++++++|||||++++++++++||||||+||
T Consensus 535 aeisIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a~ 614 (628)
T KOG1278|consen 535 AEISIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKLEISGFVSAVLYFGYSLIISLLFFLLTGTIGFLAA 614 (628)
T ss_pred HHHHHHHHHHHHHhcccceeeeeeeccCcchhhHHHHHHhhhheeeeecccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCC
Q psy17179 520 SLFVRKIYATVKID 533 (533)
Q Consensus 520 ~~fv~~iy~~~k~d 533 (533)
+||+||||+++|+|
T Consensus 615 ~~Fv~kIYssvKiD 628 (628)
T KOG1278|consen 615 FWFVRKIYSSVKID 628 (628)
T ss_pred HHHHHHHhhheecC
Confidence 99999999999998
No 2
>KOG1277|consensus
Probab=100.00 E-value=2.1e-114 Score=896.60 Aligned_cols=407 Identities=65% Similarity=1.206 Sum_probs=391.7
Q ss_pred hhccccccccccccccCHHHHHHHHHHHHcccEEEEEEeCccceeeeccccccc--CCceeEeecceEEEEEEeCCeEEE
Q psy17179 9 SELNNIAKTTYCGTRLDEEKLKAFIYAVKNHYWYQMYIDDLPIWGIVGEVEELS--DHTNYYLWTHKKFDIGYNGDRIVD 86 (533)
Q Consensus 9 ~m~~n~~C~~LC~~~lt~~~~k~l~~~I~~~Y~~~~iIDnLPv~~~iG~~~~~~--~~~k~yL~NHl~F~I~Yn~~rIVg 86 (533)
++++|++.++.|++++++||.|.++++|||+|++||++||||+|+++|+.|+++ +++|+||+||.+|+|+||+||||.
T Consensus 96 kF~~~v~~~v~C~~~L~~e~v~~f~~AI~~~Yyfqmy~DdlPIwGfvGe~d~~k~~~~~ky~L~thk~f~i~yn~drii~ 175 (593)
T KOG1277|consen 96 KFRDNVEKEVYCEKKLSEEKVKAFRYAIENDYYFQMYIDDLPIWGFVGEVDEDKLDNEGKYYLYTHKKFEIGYNGDRIID 175 (593)
T ss_pred eecccCCceeeehhhcCHHHHHHHHHHHHhhheeeeeecCceeeeEeeeeccccCCCCCceEEEEeeeEEEeecCceEEE
Confidence 578899999999999999999999999999999999999999999999988752 568999999999999999999999
Q ss_pred EEeecCccccccCCceEEEEEEEEEeecCCCccchhhhhcCCCCcccchhhHHHH-------------------------
Q psy17179 87 VNLTSENKILLENNAQIKFTYEVNWRPSNIKFEHRFDKYLDPTFFQHRGLQHLFG------------------------- 141 (533)
Q Consensus 87 f~V~p~s~~~l~~~~~I~FTYSV~W~~S~v~w~sRwD~YL~~s~~~~~I~~HWfS------------------------- 141 (533)
+|++.++..++++++++++||||+|+||++++++|.|+|+|.++++++| ||||
T Consensus 176 vnlt~~~~v~L~~~~~~~~tYsV~W~~t~v~f~~rfdkyld~~ff~h~I--HWfSIfNSfmmVifLvGlvamILMRtLrn 253 (593)
T KOG1277|consen 176 VNLTTHGLVDLRPDKKLTFTYSVKWKETEVEFEKRFDKYLDPSFFPHRI--HWFSIFNSFMMVIFLVGLVAMILMRTLRN 253 (593)
T ss_pred EEeeecccccCCCCCCCceEEEEEeeeccCcHHHHhHhhccccccccee--ehhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 9999
Q ss_pred ----------------------------------------HHhhh------------------------cccchHHHHHH
Q psy17179 142 ----------------------------------------YFSVL------------------------MGRGSLLSTAI 157 (533)
Q Consensus 142 ----------------------------------------llsaL------------------------~~rG~llt~~i 157 (533)
+|||+ .+||+++|++|
T Consensus 254 DyarY~~dee~~d~~d~d~~~E~GWK~vHgDVFR~p~~~~Lfsa~lGsG~Qlf~l~~~ii~~Alvg~fy~~rGal~saaI 333 (593)
T KOG1277|consen 254 DYARYAKDEEALDDMDRDDQEEYGWKQVHGDVFRFPSHPLLFSAVLGSGAQLFTLVLIIIMLALVGVFYTERGALLSAAI 333 (593)
T ss_pred HHHHhccchhhhccccccccccccceeeecccccCCCccHHHHHHhccccchHHHHHHHHHHHHHhhhhccchHHHHHHH
Confidence 44443 67999999999
Q ss_pred HHHHhhcCcchhhHHHHHHhhCCccceeecccccchhhHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHhhccc
Q psy17179 158 FVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIPFGTMVAVACICLFIILPL 237 (533)
Q Consensus 158 ~ly~~~g~~aGYvS~rlYk~~~g~~W~~~~~~t~~~~p~~~~~~~~~~n~~~~~~~ss~a~pf~t~~~l~~lw~~i~~PL 237 (533)
++|++||.++||+||.+|.++||++|.|++++|++++|+++++.++++|+++++++|++|+||+|+++++++|+++..||
T Consensus 334 ~vYAlTs~i~GY~~gs~Y~r~gG~~Wik~m~lta~Lfp~~~~~t~~~~N~vai~y~at~AlPfgt~v~v~~iw~fv~~PL 413 (593)
T KOG1277|consen 334 VVYALTSPINGYVSGSFYARLGGRRWIKNMLLTASLFPVPVFGTAFLLNTVAIAYGATAALPFGTIVVVLLIWLFVISPL 413 (593)
T ss_pred HHHHhcccccccccceeeehhccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccccCccchHHHHHHHHHHhchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888888888888
Q ss_pred hhhhhhcccccCCCCCCCcccCCCCCCCCCCcccchhhHHhhhccccCceeeeeeeeeeehhhhhhhhhhhhhHHHHHHH
Q psy17179 238 TLVGAVLGRNLSGQQDNPCRVNAVPRPIPEKKWFMEPLVIILLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFL 317 (533)
Q Consensus 238 ~~~G~~~g~~~~~~~e~Pv~~n~ipr~Ip~~~wy~~~~~~~ll~g~Lpf~~~fi~l~~~~~~~~~~~~~~~~g~~~~~~~ 317 (533)
+++
T Consensus 414 ~~~----------------------------------------------------------------------------- 416 (593)
T KOG1277|consen 414 TVL----------------------------------------------------------------------------- 416 (593)
T ss_pred HHc-----------------------------------------------------------------------------
Confidence 887
Q ss_pred HHHHHhccccccccccccccchhhhhhhhhhhcccccccceEEeeecCCCCCCCcccCCCCCCCCCCCCchhhHHHHHhc
Q psy17179 318 ILMIVTFAPTSYSTLKTTDGTMVAVACICLFIILPLTLVGAVLGRNLSGQQDNPCRVNAVPRPIPEKKWFMEPLVIILLG 397 (533)
Q Consensus 318 il~i~~~~~~s~~~~~~~~~t~~~~~~lw~~i~~Pl~~~G~~~g~~~~~~~~~P~r~n~ipR~IP~q~wy~~~~~~~l~~ 397 (533)
|++.|+|++++++.|||++++||+||++|||+++..++++|
T Consensus 417 ---------------------------------------G~i~GkN~~~~~~~PCR~~~~pR~Ip~~kWy~~~~~~~~~g 457 (593)
T KOG1277|consen 417 ---------------------------------------GGIAGKNRSGEFDAPCRTKAIPREIPPKKWYRSPLVIMLMG 457 (593)
T ss_pred ---------------------------------------ccccccccccCCCCCcccccCCCCCCCccccccchHHHHhh
Confidence 77777777889999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCcccchhccccchhHHHHHHhh
Q psy17179 398 GILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTVCVTIVCTYFLLNAEDYRWQWTSFLAAYSTSFYVYMYS 477 (533)
Q Consensus 398 GilPF~~i~~el~~~f~siw~~~~y~~~~~L~~~~~il~~~~~~~si~~~y~~l~~e~y~W~W~sf~~~~s~~~y~~~ys 477 (533)
|++||++|++|++|+|+|+|.++.|++||+++++++||+++++|+||++||+||++||||||||||+.+||||+|+++||
T Consensus 458 G~LPFgsIfIEmYfIFtSfW~ykiYyvYgfm~lVf~IL~iVtvcvTIv~TYFlLnaEDyrW~WtSfls~~ST~~yvy~Ys 537 (593)
T KOG1277|consen 458 GFLPFGSIFIEMYFIFTSFWGYKIYYVYGFMFLVFVILLIVTVCVTIVLTYFLLNAEDYRWWWTSFLSAGSTALYVYLYS 537 (593)
T ss_pred ccCccchhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccceeeeeeeeccccceeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeeeeeeeecccchhhhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhcccCC
Q psy17179 478 FYYFFFKTKMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 533 (533)
Q Consensus 478 ~~y~~~~~~~~~~~~~~~y~~y~~~~~~~~~l~~g~igf~~s~~fv~~iy~~~k~d 533 (533)
+||+++|++|.|++||.+|||||++++.++|+|||||||.++..||||||.++|+|
T Consensus 538 ~yYy~~ktkMsG~fQTsfyFGYm~~f~~~lgim~Gtigy~gt~~FVR~IY~nvK~d 593 (593)
T KOG1277|consen 538 FYYYFFKTKMSGLFQTSFYFGYMAVFCYALGLMCGTIGYVGTLLFVRKIYRNVKID 593 (593)
T ss_pred HHHHhhhccccchhhhhhhhHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999998
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=3.5e-99 Score=824.92 Aligned_cols=364 Identities=44% Similarity=0.892 Sum_probs=336.1
Q ss_pred hhccccccccccccccCHHHHHHHHHHHHcccEEEEEEeCccceeeecccccc------------cCCceeEeecceEEE
Q psy17179 9 SELNNIAKTTYCGTRLDEEKLKAFIYAVKNHYWYQMYIDDLPIWGIVGEVEEL------------SDHTNYYLWTHKKFD 76 (533)
Q Consensus 9 ~m~~n~~C~~LC~~~lt~~~~k~l~~~I~~~Y~~~~iIDnLPv~~~iG~~~~~------------~~~~k~yL~NHl~F~ 76 (533)
+|++|++|+++|+++++++|+++++++|||+|++||++||||+++.+|+.++. .+++++|||||++|+
T Consensus 41 ~f~~~~~c~~lC~~~l~~~~~~~l~~~I~~~Y~~~~~vD~LP~~~~~~~~~~~~~~y~~G~~~g~~~~~~~~l~NH~~f~ 120 (521)
T PF02990_consen 41 KFLQNVTCKVLCKKTLTKEDVKKLKEAIENNYRVEMYVDDLPIAGFIGSVDGCDKGYPIGFPLGFKDDNKYYLYNHLDFT 120 (521)
T ss_pred EEecCcchhhccCccCCHHHHHHHHHHHHHhheeeEEecCceEEEEecccCCcceecCCCcccCcccCCcceeEeEEEEE
Confidence 68999999999999999999999999999999999999999999998876641 146899999999999
Q ss_pred EEEe----CC-eEEEEEeecCc------------cccccCCc---eEEEEEEEEEeecCCCccchhhhhcCCCCcccchh
Q psy17179 77 IGYN----GD-RIVDVNLTSEN------------KILLENNA---QIKFTYEVNWRPSNIKFEHRFDKYLDPTFFQHRGL 136 (533)
Q Consensus 77 I~Yn----~~-rIVgf~V~p~s------------~~~l~~~~---~I~FTYSV~W~~S~v~w~sRwD~YL~~s~~~~~I~ 136 (533)
|+|| ++ |||||||+|+| ++.+++++ +|+|||||+|++++++|++|||+|+++ ..++++
T Consensus 121 I~Yn~~~~~~~~IVgf~v~p~Si~~~~C~~~~~~~~~l~~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~Yl~~-~~~~~i- 198 (521)
T PF02990_consen 121 IRYNQESNGDYRIVGFEVTPRSIDHSTCPGNESSPQELPEDKEADNITFTYSVKWEESDVPWASRWDKYLDS-MFDSQI- 198 (521)
T ss_pred EEEECCCCCceEEEEEEEEeccccCccccccCCCCeeccCCCcccEEEEEEEEEEEecCCchhhcccccccc-ccCCce-
Confidence 9999 34 99999999944 22333332 699999999999999999999999985 567899
Q ss_pred hHHHH------------------------------------------------------------HHhhh----------
Q psy17179 137 QHLFG------------------------------------------------------------YFSVL---------- 146 (533)
Q Consensus 137 ~HWfS------------------------------------------------------------llsaL---------- 146 (533)
||+| +||++
T Consensus 199 -hw~SiiNS~iivl~L~~~v~~Il~R~l~~D~~~y~~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~ 277 (521)
T PF02990_consen 199 -HWFSIINSFIIVLFLSGLVAIILLRTLRRDISRYNDEDSEEDDQEESGWKLVHGDVFRPPKHPMLLSALVGTGIQLLFM 277 (521)
T ss_pred -EEEeHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccchhhhhHHHhcCcCCchHHHhHhcchhhhhHH
Confidence 9999 33332
Q ss_pred ---------------cccchHHHHHHHHHHhhcCcchhhHHHHHHhhCCccceeecccccchhhHHHHHHHHHHHHHHHH
Q psy17179 147 ---------------MGRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMY 211 (533)
Q Consensus 147 ---------------~~rG~llt~~i~ly~~~g~~aGYvS~rlYk~~~g~~W~~~~~~t~~~~p~~~~~~~~~~n~~~~~ 211 (533)
++||+++|+++++|+++|++|||+|||+||+++|++||+++++|++++|++++++++++|+++|.
T Consensus 278 ~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~~~P~~~~~~~~~~n~i~~~ 357 (521)
T PF02990_consen 278 ALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNSILTSLLFPGILFSIFFILNFIAWS 357 (521)
T ss_pred HHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCccchhHHHHHHHHHHHhhccchhhhhhcccccCCCCCCCcccCCCCCCCCCCcccchhhHHhhhccccCceeeee
Q psy17179 212 YHASRAIPFGTMVAVACICLFIILPLTLVGAVLGRNLSGQQDNPCRVNAVPRPIPEKKWFMEPLVIILLGGILPFGSIFI 291 (533)
Q Consensus 212 ~~ss~a~pf~t~~~l~~lw~~i~~PL~~~G~~~g~~~~~~~e~Pv~~n~ipr~Ip~~~wy~~~~~~~ll~g~Lpf~~~fi 291 (533)
++||+|+||+|++.++++|++|++||+++||++|+|+.
T Consensus 358 ~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~------------------------------------------ 395 (521)
T PF02990_consen 358 YGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNP------------------------------------------ 395 (521)
T ss_pred hccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCcc------------------------------------------
Confidence 99999999999999999999999999999888887642
Q ss_pred eeeeeehhhhhhhhhhhhhHHHHHHHHHHHHhccccccccccccccchhhhhhhhhhhcccccccceEEeeecCCCCCCC
Q psy17179 292 EMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTFAPTSYSTLKTTDGTMVAVACICLFIILPLTLVGAVLGRNLSGQQDNP 371 (533)
Q Consensus 292 ~l~~~~~~~~~~~~~~~~g~~~~~~~il~i~~~~~~s~~~~~~~~~t~~~~~~lw~~i~~Pl~~~G~~~g~~~~~~~~~P 371 (533)
+..|.|
T Consensus 396 --------------------------------------------------------------------------~~~~~p 401 (521)
T PF02990_consen 396 --------------------------------------------------------------------------PIDEFP 401 (521)
T ss_pred --------------------------------------------------------------------------ccccCC
Confidence 122789
Q ss_pred cccCCCCCCCCCCCCchhhHHHHHhccccchhhHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy17179 372 CRVNAVPRPIPEKKWFMEPLVIILLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTVCVTIVCTYFLL 451 (533)
Q Consensus 372 ~r~n~ipR~IP~q~wy~~~~~~~l~~GilPF~~i~~el~~~f~siw~~~~y~~~~~L~~~~~il~~~~~~~si~~~y~~l 451 (533)
||+|+||||||+||||+++++.++++|++||+++++|++++++|+|.+++|++||+|++++++++++|+|+||++||+||
T Consensus 402 ~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~~~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L 481 (521)
T PF02990_consen 402 CRTNQIPRQIPPQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLWSNKFYYLFGFLLLVFILLIITCAEVSIILTYFQL 481 (521)
T ss_pred cCCCCCCCcCCCCccccCCccceeecchHHHHHHHHHHHHHHHHhhcCcceEEehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccchhccccchhHHHHHHhhheeeeeeeeecccc
Q psy17179 452 NAEDYRWQWTSFLAAYSTSFYVYMYSFYYFFFKTKMYGLF 491 (533)
Q Consensus 452 ~~e~y~W~W~sf~~~~s~~~y~~~ys~~y~~~~~~~~~~~ 491 (533)
|+||||||||||++|||+|+|+|+||+||+++|++|+|++
T Consensus 482 ~~Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~~~~~~~g~~ 521 (521)
T PF02990_consen 482 CAEDYRWWWRSFLTGGSSGIYVFLYSIYYYFTKLSMSGFV 521 (521)
T ss_pred hccccceeeeeehhCcHHHHHHHHHHHHhhheeEEeeecC
Confidence 9999999999999999999999999999999999999974
No 4
>KOG1278|consensus
Probab=99.73 E-value=7.1e-19 Score=188.64 Aligned_cols=74 Identities=47% Similarity=1.136 Sum_probs=71.5
Q ss_pred CCCcccCCCCCCCCCCcccchhhHHhhhccccCceeeeeeeeeeehhhhhhhhhhhhhHHHHHHHHHHHHhccc
Q psy17179 253 DNPCRVNAVPRPIPEKKWFMEPLVIILLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTFAP 326 (533)
Q Consensus 253 e~Pv~~n~ipr~Ip~~~wy~~~~~~~ll~g~Lpf~~~fi~l~~~~~~~~~~~~~~~~g~~~~~~~il~i~~~~~ 326 (533)
|+||||||||||||+|+||+|+++.+++||+||||++||||+||++|+|..|+||+||++++++.||.+.+-..
T Consensus 464 e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaei 537 (628)
T KOG1278|consen 464 EHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEI 537 (628)
T ss_pred CCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999998877665
No 5
>KOG1277|consensus
Probab=99.66 E-value=3.4e-17 Score=172.27 Aligned_cols=79 Identities=75% Similarity=1.449 Sum_probs=75.9
Q ss_pred ccccCCCCCCCcccCCCCCCCCCCcccchhhHHhhhccccCceeeeeeeeeeehhhhhhhhhhhhhHHHHHHHHHHHHh
Q psy17179 245 GRNLSGQQDNPCRVNAVPRPIPEKKWFMEPLVIILLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVT 323 (533)
Q Consensus 245 g~~~~~~~e~Pv~~n~ipr~Ip~~~wy~~~~~~~ll~g~Lpf~~~fi~l~~~~~~~~~~~~~~~~g~~~~~~~il~i~~ 323 (533)
|+.++.+.+.|||++++||+||++|||++|.+.+.+||+||||+||||+.||++|.|+++.||+||++++|+.||.++.
T Consensus 421 GkN~~~~~~~PCR~~~~pR~Ip~~kWy~~~~~~~~~gG~LPFgsIfIEmYfIFtSfW~ykiYyvYgfm~lVf~IL~iVt 499 (593)
T KOG1277|consen 421 GKNRSGEFDAPCRTKAIPREIPPKKWYRSPLVIMLMGGFLPFGSIFIEMYFIFTSFWGYKIYYVYGFMFLVFVILLIVT 499 (593)
T ss_pred ccccccCCCCCcccccCCCCCCCccccccchHHHHhhccCccchhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999999999999999999999999999999999999999999999999999988864
No 6
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=99.53 E-value=1.2e-15 Score=167.98 Aligned_cols=72 Identities=56% Similarity=1.296 Sum_probs=67.5
Q ss_pred CCCcccCCCCCCCCCCcccchhhHHhhhccccCceeeeeeeeeeehhhhhhhhhhhhhHHHHHHHHHHHHhc
Q psy17179 253 DNPCRVNAVPRPIPEKKWFMEPLVIILLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTF 324 (533)
Q Consensus 253 e~Pv~~n~ipr~Ip~~~wy~~~~~~~ll~g~Lpf~~~fi~l~~~~~~~~~~~~~~~~g~~~~~~~il~i~~~ 324 (533)
|+|||+|||||+||+||||+++++.++++|++||+++++|++|+++|+|..++||+||+++.++.++.++.-
T Consensus 399 ~~p~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~~~y~~fgfl~~~~~ll~i~~a 470 (521)
T PF02990_consen 399 EFPCRTNQIPRQIPPQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLWSNKFYYLFGFLLLVFILLIITCA 470 (521)
T ss_pred cCCcCCCCCCCcCCCCccccCCccceeecchHHHHHHHHHHHHHHHHhhcCcceEEehHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999988777666544
No 7
>PRK09546 zntB zinc transporter; Reviewed
Probab=29.49 E-value=27 Score=36.47 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=18.2
Q ss_pred hhhhhhhcccccccceEEeeecC
Q psy17179 343 ACICLFIILPLTLVGAVLGRNLS 365 (533)
Q Consensus 343 ~~lw~~i~~Pl~~~G~~~g~~~~ 365 (533)
+-++..|.+|+|++.|++|.|++
T Consensus 267 Ltilt~IflPlT~IaGiyGMNf~ 289 (324)
T PRK09546 267 MSLMAMVFLPTTFLTGLFGVNLG 289 (324)
T ss_pred HHHHHHHHHHHHHHHhhhccccC
Confidence 44555677799999999999953
No 8
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=28.97 E-value=85 Score=32.38 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHhhccchhhhhhcccc
Q psy17179 221 GTMVAVACICLFIILPLTLVGAVLGRN 247 (533)
Q Consensus 221 ~t~~~l~~lw~~i~~PL~~~G~~~g~~ 247 (533)
...+-.+.+|-.|-+|+++++|++|-.
T Consensus 255 N~~mk~LTvvt~IflP~t~IaGiyGMN 281 (318)
T TIGR00383 255 NEIMKILTVVSTIFIPLTFIAGIYGMN 281 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999975
No 9
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=25.18 E-value=36 Score=25.65 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=28.8
Q ss_pred CccceeecccccchhhHHHHHHHHHHHHHHHHhcc
Q psy17179 180 GRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHA 214 (533)
Q Consensus 180 g~~W~~~~~~t~~~~p~~~~~~~~~~n~~~~~~~s 214 (533)
.+.|+...+++.+++|.+..+....-.++.|..+-
T Consensus 2 ~~El~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 2 RMELNTFLFLAAVIWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999998888887777777653
No 10
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=25.03 E-value=21 Score=31.05 Aligned_cols=25 Identities=28% Similarity=0.857 Sum_probs=22.2
Q ss_pred CcccchhhHHhhhccccCceeeeee
Q psy17179 268 KKWFMEPLVIILLGGILPFGSIFIE 292 (533)
Q Consensus 268 ~~wy~~~~~~~ll~g~Lpf~~~fi~ 292 (533)
++|-.+.....+++|++||+++..|
T Consensus 62 ~rW~~~~~~~~llas~iPfg~f~~e 86 (92)
T PF12823_consen 62 YRWSLKRTLLALLASVIPFGTFWFE 86 (92)
T ss_pred cCCChHHHHHHHHHHcccccHHHHH
Confidence 5788899999999999999998765
No 11
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=23.87 E-value=50 Score=28.67 Aligned_cols=25 Identities=28% Similarity=0.857 Sum_probs=22.4
Q ss_pred CCCchhhHHHHHhccccchhhHHHH
Q psy17179 384 KKWFMEPLVIILLGGILPFGSIFIE 408 (533)
Q Consensus 384 q~wy~~~~~~~l~~GilPF~~i~~e 408 (533)
+.|-.+.....+++|++||+....|
T Consensus 62 ~rW~~~~~~~~llas~iPfg~f~~e 86 (92)
T PF12823_consen 62 YRWSLKRTLLALLASVIPFGTFWFE 86 (92)
T ss_pred cCCChHHHHHHHHHHcccccHHHHH
Confidence 5677888888999999999999988
No 12
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=22.88 E-value=28 Score=21.30 Aligned_cols=8 Identities=38% Similarity=1.004 Sum_probs=5.8
Q ss_pred CCcccchh
Q psy17179 455 DYRWQWTS 462 (533)
Q Consensus 455 ~y~W~W~s 462 (533)
--||||..
T Consensus 6 ~~nwwwta 13 (18)
T PF08055_consen 6 IQNWWWTA 13 (18)
T ss_pred ccceeeec
Confidence 35899975
No 13
>PRK09546 zntB zinc transporter; Reviewed
Probab=22.54 E-value=1.4e+02 Score=31.11 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhccchhhhhhccccc
Q psy17179 222 TMVAVACICLFIILPLTLVGAVLGRNL 248 (533)
Q Consensus 222 t~~~l~~lw~~i~~PL~~~G~~~g~~~ 248 (533)
...-++.++-.+.+|+|++.|++|-.-
T Consensus 262 ~~m~~Ltilt~IflPlT~IaGiyGMNf 288 (324)
T PRK09546 262 RRTYTMSLMAMVFLPTTFLTGLFGVNL 288 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 334455556667779999999999763
No 14
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=21.82 E-value=1.4e+02 Score=30.79 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=28.5
Q ss_pred hhhhhcccccCCcccchhccccchhHHHHHHhhheeeeee
Q psy17179 445 VCTYFLLNAEDYRWQWTSFLAAYSTSFYVYMYSFYYFFFK 484 (533)
Q Consensus 445 ~~~y~~l~~e~y~W~W~sf~~~~s~~~y~~~ys~~y~~~~ 484 (533)
+.||-. +++|+=-+-++....-.+++++..|+||+--|
T Consensus 217 vGT~~~--A~~~~giY~~wv~~~l~a~~~~~rs~yy~~mk 254 (256)
T PF09788_consen 217 VGTWTY--AKTYGGIYVSWVGLFLIALICLIRSIYYCCMK 254 (256)
T ss_pred hhhHHH--HhhcCcEeHHHHHHHHHHHHHHHHhheeEEEe
Confidence 445444 56666677888888889999999999998543
No 15
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=21.43 E-value=70 Score=26.36 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=14.5
Q ss_pred ccCHHHHHHHHHHHHcccEEEE
Q psy17179 23 RLDEEKLKAFIYAVKNHYWYQM 44 (533)
Q Consensus 23 ~lt~~~~k~l~~~I~~~Y~~~~ 44 (533)
-++++|.+.+.+.+++.|-+++
T Consensus 4 ~LSkKe~k~~~~k~~~~ygIdi 25 (65)
T PF09183_consen 4 FLSKKEIKEIKEKIKEKYGIDI 25 (65)
T ss_dssp E--HHHHHHHHHHHHT-TT---
T ss_pred cccHHHHHHHHHHHHHHhCcCC
Confidence 3789999999999999996544
No 16
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=21.38 E-value=40 Score=26.97 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=29.2
Q ss_pred CCccceeecccccchhhHHHHHHHHHHHHHHHHhcc
Q psy17179 179 GGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHA 214 (533)
Q Consensus 179 ~g~~W~~~~~~t~~~~p~~~~~~~~~~n~~~~~~~s 214 (533)
+++.|+...+++.+++|.+..+....-.++.|..+-
T Consensus 14 k~~E~~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q~ 49 (56)
T PF06796_consen 14 KRSELKAFLFLAVVLFPILAVAFVGGYGFIVWMYQI 49 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999998888877777776553
No 17
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.26 E-value=1.9e+02 Score=28.33 Aligned_cols=26 Identities=8% Similarity=0.286 Sum_probs=14.7
Q ss_pred ccCCcccchhccccch-hHHHHHHhhh
Q psy17179 453 AEDYRWQWTSFLAAYS-TSFYVYMYSF 478 (533)
Q Consensus 453 ~e~y~W~W~sf~~~~s-~~~y~~~ys~ 478 (533)
.++..+||+.++.+.. ..+.+.++.+
T Consensus 140 ~~~r~~~~k~~~~~~~~~~~w~~~~~~ 166 (206)
T PF06570_consen 140 KKKRPSWWKYILISVLAMVLWIVIFVL 166 (206)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555678998864443 4444444443
No 18
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=20.67 E-value=40 Score=26.01 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=29.4
Q ss_pred CCccceeecccccchhhHHHHHHHHHHHHHHHHhcc
Q psy17179 179 GGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHA 214 (533)
Q Consensus 179 ~g~~W~~~~~~t~~~~p~~~~~~~~~~n~~~~~~~s 214 (533)
+.+.|+...+++.+++|.+..+....-.++.|..+.
T Consensus 6 k~~El~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q~ 41 (47)
T TIGR02972 6 RSNELKALGFIIVVLFPILSVAGIGGYGFIIWMIQA 41 (47)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999998888887777776653
Done!