Query psy17179
Match_columns 533
No_of_seqs 162 out of 635
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:53:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 33.3 49 0.0017 33.2 5.5 28 221-248 276-303 (339)
2 2iub_A CORA, divalent cation t 26.4 38 0.0013 34.4 3.3 28 220-247 299-326 (363)
3 3jsl_A DNA ligase; NAD+-depend 20.0 1.5E+02 0.0051 30.1 6.2 31 22-52 84-119 (318)
4 2vqe_M 30S ribosomal protein S 18.5 56 0.0019 28.9 2.3 22 23-44 47-68 (126)
5 1ta8_A DNA ligase, NAD-depende 17.5 1.7E+02 0.0059 29.8 6.0 31 22-52 91-127 (332)
6 1b04_A Protein (DNA ligase); D 16.5 1.5E+02 0.0053 29.9 5.3 31 22-52 86-121 (318)
7 4ev6_A Magnesium transport pro 14.4 42 0.0014 33.8 0.4 25 341-365 280-304 (339)
8 3uq8_A DNA ligase; adenylated 14.4 2.4E+02 0.0082 28.6 6.1 31 22-52 82-121 (322)
9 2pv9_C Proteinase-activated re 12.9 56 0.0019 21.2 0.5 14 260-273 6-19 (26)
10 2iub_A CORA, divalent cation t 10.3 43 0.0015 34.0 -1.0 25 340-364 303-327 (363)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=33.29 E-value=49 Score=33.22 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHhhccchhhhhhccccc
Q psy17179 221 GTMVAVACICLFIILPLTLVGAVLGRNL 248 (533)
Q Consensus 221 ~t~~~l~~lw~~i~~PL~~~G~~~g~~~ 248 (533)
..++..+.+|-.|-+|+|++.|++|-.-
T Consensus 276 N~~mk~LTiit~IflP~T~IaGiyGMNf 303 (339)
T 4ev6_A 276 NQIMKILTMVTTIFAVPMWITGIYGMNF 303 (339)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 4567789999999999999999999763
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=26.43 E-value=38 Score=34.44 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHhhccchhhhhhcccc
Q psy17179 220 FGTMVAVACICLFIILPLTLVGAVLGRN 247 (533)
Q Consensus 220 f~t~~~l~~lw~~i~~PL~~~G~~~g~~ 247 (533)
-..++..+.+|-.|-+|+|++.|++|-.
T Consensus 299 ~N~imk~LTiit~IflP~T~IaGiyGMN 326 (363)
T 2iub_A 299 TNEVMKVLTIIATIFMPLTFIAGIYGMN 326 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3456788999999999999999999975
No 3
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=19.99 E-value=1.5e+02 Score=30.05 Aligned_cols=31 Identities=23% Similarity=0.504 Sum_probs=27.5
Q ss_pred cccCHHHHHHHHHHHHc-----ccEEEEEEeCccce
Q psy17179 22 TRLDEEKLKAFIYAVKN-----HYWYQMYIDDLPIW 52 (533)
Q Consensus 22 ~~lt~~~~k~l~~~I~~-----~Y~~~~iIDnLPv~ 52 (533)
+..+++|+..+.+++++ +|.++.-+|||-+.
T Consensus 84 n~f~~eel~~f~~r~~~~l~~~~~~~EpKiDGlais 119 (318)
T 3jsl_A 84 NAFNEDDLRKFDQRIREQIGNVEYMCELKIDGLAVS 119 (318)
T ss_dssp EECSHHHHHHHHHHHHHHTCSCCEEEEEEECSEEEE
T ss_pred ccCCHHHHHHHHHHHHhhcCCceEEEEEeecceEEE
Confidence 45789999999999976 89999999999984
No 4
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=18.49 E-value=56 Score=28.88 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=19.2
Q ss_pred ccCHHHHHHHHHHHHcccEEEE
Q psy17179 23 RLDEEKLKAFIYAVKNHYWYQM 44 (533)
Q Consensus 23 ~lt~~~~k~l~~~I~~~Y~~~~ 44 (533)
.++++|++++++.|+++|.++-
T Consensus 47 ~Lt~~ei~~l~~~i~~~~~ve~ 68 (126)
T 2vqe_M 47 DLTEAEVVRLREYVENTWKLEG 68 (126)
T ss_dssp GCCHHHHHHHHHHHHTTSCCHH
T ss_pred cCCHHHHHHHHHHHHHhCcchh
Confidence 7999999999999999886553
No 5
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=17.46 E-value=1.7e+02 Score=29.75 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=27.1
Q ss_pred cccCHHHHHHHHHHHHcc------cEEEEEEeCccce
Q psy17179 22 TRLDEEKLKAFIYAVKNH------YWYQMYIDDLPIW 52 (533)
Q Consensus 22 ~~lt~~~~k~l~~~I~~~------Y~~~~iIDnLPv~ 52 (533)
+..+++|+..+.+++++. |.++.-+|||-+.
T Consensus 91 n~f~~eel~~w~~rv~~~l~~~~~~~~EpKiDGlais 127 (332)
T 1ta8_A 91 DGFSKEDIFAFDERVRKAIGKPVAYCCELKIDGLAIS 127 (332)
T ss_dssp EECSHHHHHHHHHHHHHHHSSCCCEEEEEEECSEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCceEEEeeeecceEEE
Confidence 467889999999998864 9999999999985
No 6
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=16.50 E-value=1.5e+02 Score=29.95 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=27.1
Q ss_pred cccCHHHHHHHHHHHHcc-----cEEEEEEeCccce
Q psy17179 22 TRLDEEKLKAFIYAVKNH-----YWYQMYIDDLPIW 52 (533)
Q Consensus 22 ~~lt~~~~k~l~~~I~~~-----Y~~~~iIDnLPv~ 52 (533)
+..+++|+..+.+++++. |.++.-+|||-+.
T Consensus 86 n~f~~eel~~f~~rv~~~l~~~~~~~EpKiDGlais 121 (318)
T 1b04_A 86 NAFGEGDLRDFDRRVRQEVGEAAYVCELAIDGLAVS 121 (318)
T ss_dssp EECSTTHHHHHHHHHHHHHSSCCEEEEEEESSEEEE
T ss_pred ccCCHHHHHHHHHHHHHhccCceEEEEEecccEEEE
Confidence 457889999999999875 9999999999985
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=14.41 E-value=42 Score=33.75 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.1
Q ss_pred hhhhhhhhhcccccccceEEeeecC
Q psy17179 341 AVACICLFIILPLTLVGAVLGRNLS 365 (533)
Q Consensus 341 ~~~~lw~~i~~Pl~~~G~~~g~~~~ 365 (533)
-++-+|..|-+|+|++.|++|.|++
T Consensus 280 k~LTiit~IflP~T~IaGiyGMNf~ 304 (339)
T 4ev6_A 280 KILTMVTTIFAVPMWITGIYGMNFS 304 (339)
T ss_dssp HHHHHHHHHSSHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHhhccCcCC
Confidence 4566788888999999999999963
No 8
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=14.38 E-value=2.4e+02 Score=28.59 Aligned_cols=31 Identities=13% Similarity=0.404 Sum_probs=26.8
Q ss_pred cccCHHHHHHHHHHHHc---------ccEEEEEEeCccce
Q psy17179 22 TRLDEEKLKAFIYAVKN---------HYWYQMYIDDLPIW 52 (533)
Q Consensus 22 ~~lt~~~~k~l~~~I~~---------~Y~~~~iIDnLPv~ 52 (533)
+..+++|+..+.+++++ +|.++.-+|||-+.
T Consensus 82 n~~~~eel~~f~~rv~~~l~~~~~~~~~~~EpKiDGlais 121 (322)
T 3uq8_A 82 NAFSDAEFNAFVARIEDRLILLPAPLTFCCEPKLDGLAVS 121 (322)
T ss_dssp EECSHHHHHHHHHHHHHHCSSCCSSCEEEEEEEESSEEEE
T ss_pred ccCCHHHHHHHHHHHHHhccCCCcCceEEEEEeeceEEEE
Confidence 45799999999999875 49999999999985
No 9
>2pv9_C Proteinase-activated receptor 4; serine protease, hydrolase; HET: NAG; 3.50A {Mus musculus}
Probab=12.86 E-value=56 Score=21.16 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=11.4
Q ss_pred CCCCCCCCCcccch
Q psy17179 260 AVPRPIPEKKWFME 273 (533)
Q Consensus 260 ~ipr~Ip~~~wy~~ 273 (533)
..||-+|+|+|-.+
T Consensus 6 ~~P~~~Pg~~~an~ 19 (26)
T 2pv9_C 6 PNPRGYPGKFCAND 19 (26)
T ss_dssp CEECSCTTTTCSCC
T ss_pred CCCccCCCCccCCC
Confidence 35899999999865
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=10.28 E-value=43 Score=34.00 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=18.8
Q ss_pred hhhhhhhhhhcccccccceEEeeec
Q psy17179 340 VAVACICLFIILPLTLVGAVLGRNL 364 (533)
Q Consensus 340 ~~~~~lw~~i~~Pl~~~G~~~g~~~ 364 (533)
.-.+-+|..|-+|+|++.|++|.|+
T Consensus 303 mk~LTiit~IflP~T~IaGiyGMNf 327 (363)
T 2iub_A 303 MKVLTIIATIFMPLTFIAGIYGMNF 327 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccC
Confidence 3456778888899999999999995
Done!