Query psy17179
Match_columns 533
No_of_seqs 162 out of 635
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 23:53:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17179.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17179hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 12.7 89 0.0064 21.9 3.7 25 223-247 5-29 (64)
2 d2uubm1 a.156.1.1 (M:2-126) Ri 12.6 49 0.0036 26.8 2.5 21 23-43 46-66 (125)
3 d2brfa1 b.26.1.2 (A:8-108) Pol 10.9 79 0.0057 24.3 3.1 18 96-113 79-101 (101)
4 d1v74a_ d.243.1.1 (A:) Colicin 9.7 2.5E+02 0.018 22.0 5.7 85 2-95 11-97 (107)
5 d1r7ma2 d.95.2.1 (A:121-225) D 7.6 1E+02 0.0076 23.8 2.6 30 16-45 39-68 (105)
6 d1sdia_ a.198.1.1 (A:) Hypothe 7.4 54 0.0039 29.2 0.7 19 167-185 173-191 (213)
7 d1q90d_ f.32.1.1 (D:) Subunit 7.2 5.2E+02 0.038 21.1 7.3 30 378-408 69-104 (156)
8 d2i4ra1 c.149.1.1 (A:4-79) V-t 6.7 29 0.0021 25.9 -1.4 7 31-37 33-39 (76)
9 d2cqna1 a.159.2.1 (A:743-806) 6.4 49 0.0035 24.2 -0.2 15 1-15 1-16 (64)
10 d1k8ib2 d.19.1.1 (B:1-94) Clas 6.0 74 0.0054 24.8 0.7 28 89-116 4-32 (94)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=12.70 E-value=89 Score=21.92 Aligned_cols=25 Identities=32% Similarity=0.584 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhccchhhhhhcccc
Q psy17179 223 MVAVACICLFIILPLTLVGAVLGRN 247 (533)
Q Consensus 223 ~~~l~~lw~~i~~PL~~~G~~~g~~ 247 (533)
.+..+..+-.+-+|++++.|++|-.
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN 29 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMN 29 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3456677778889999999999975
No 2
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}
Probab=12.58 E-value=49 Score=26.83 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=18.4
Q ss_pred ccCHHHHHHHHHHHHcccEEE
Q psy17179 23 RLDEEKLKAFIYAVKNHYWYQ 43 (533)
Q Consensus 23 ~lt~~~~k~l~~~I~~~Y~~~ 43 (533)
.++++|++.+++.|+++|.++
T Consensus 46 ~Lt~~qi~~I~~~i~~~~~i~ 66 (125)
T d2uubm1 46 DLTEAEVVRLREYVENTWKLE 66 (125)
T ss_dssp GCCHHHHHHHHHHHHHHSCCT
T ss_pred cccHHHHHHHHHHHhhhhhhH
Confidence 799999999999999987553
No 3
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.93 E-value=79 Score=24.29 Aligned_cols=18 Identities=11% Similarity=0.294 Sum_probs=11.8
Q ss_pred cccCCceEE-----EEEEEEEee
Q psy17179 96 LLENNAQIK-----FTYEVNWRP 113 (533)
Q Consensus 96 ~l~~~~~I~-----FTYSV~W~~ 113 (533)
++.++..|. |.|.|+|||
T Consensus 79 ~L~~GD~i~l~~~~~~y~v~fee 101 (101)
T d2brfa1 79 SLGVGDTLYLVNGLHPLTLRWEE 101 (101)
T ss_dssp EEETTCEEEEETTEEEEEEEEEC
T ss_pred ECCCCCEEEEcCCeEEEEEEEEC
Confidence 344444444 589999986
No 4
>d1v74a_ d.243.1.1 (A:) Colicin D nuclease domain {Escherichia coli [TaxId: 562]}
Probab=9.73 E-value=2.5e+02 Score=22.04 Aligned_cols=85 Identities=19% Similarity=0.142 Sum_probs=52.0
Q ss_pred cchhhhHhhccccccccccccccCHHHHHHHHHHHHcccEEEEEEeCccceeeecccccccCCceeEeec--ceEEEEEE
Q psy17179 2 RRKQTFKSELNNIAKTTYCGTRLDEEKLKAFIYAVKNHYWYQMYIDDLPIWGIVGEVEELSDHTNYYLWT--HKKFDIGY 79 (533)
Q Consensus 2 ~~~~~~~~m~~n~~C~~LC~~~lt~~~~k~l~~~I~~~Y~~~~iIDnLPv~~~iG~~~~~~~~~k~yL~N--Hl~F~I~Y 79 (533)
-|||.=|+++.-..- -+-+++-+++.+.+++++|++.- ++=|- -.-|.+... ++-+.|.|- |.-..+.-
T Consensus 11 trkqL~kkfkHa~DF-Gi~~t~~N~~Tl~~fedaI~~Hl------~~~~t-vekGTY~~~-kdskV~fN~~T~~~Viid~ 81 (107)
T d1v74a_ 11 SRKQLDKKYKHAGDF-GISDTKKNRETLTKFRDAIEEHL------SDKDT-VEKGTYRRE-KGSKVYFNPNTMNVVIIKS 81 (107)
T ss_dssp CHHHHHHHGGGGGGG-TCCCCCCSHHHHHHHHHHHHHHH------HCTTC-EECCBCTTS-TTCEEEECTTTCEEEEECT
T ss_pred hHHHHhHhhcccccc-cccccccChhhHHHHHHHHHHHh------cCccc-eecceeecc-cccEEEEcCCCceEEEECC
Confidence 478888888544333 33456788999999999999973 44332 222333222 234555543 34444444
Q ss_pred eCCeEEEEEeecCccc
Q psy17179 80 NGDRIVDVNLTSENKI 95 (533)
Q Consensus 80 n~~rIVgf~V~p~s~~ 95 (533)
+++-+-|..+.|.+.+
T Consensus 82 ~G~fvsGwkl~p~t~q 97 (107)
T d1v74a_ 82 NGEFLSGWKINPDADN 97 (107)
T ss_dssp TSCEEEEEECCTTSHH
T ss_pred CCCeeeeeEecCCcHH
Confidence 4568899999987643
No 5
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.63 E-value=1e+02 Score=23.75 Aligned_cols=30 Identities=10% Similarity=0.252 Sum_probs=25.0
Q ss_pred cccccccccCHHHHHHHHHHHHcccEEEEE
Q psy17179 16 KTTYCGTRLDEEKLKAFIYAVKNHYWYQMY 45 (533)
Q Consensus 16 C~~LC~~~lt~~~~k~l~~~I~~~Y~~~~i 45 (533)
.-.+|+..+|++|.+.+.+.+++.|-.+-.
T Consensus 39 ~i~l~T~~Ft~~e~~~L~~~L~~kf~l~~~ 68 (105)
T d1r7ma2 39 SIVLNTQSFTFEEVEYLVKGLRNKFQLNCY 68 (105)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCceEE
Confidence 346899999999999999999999855443
No 6
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli [TaxId: 562]}
Probab=7.43 E-value=54 Score=29.21 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=17.4
Q ss_pred chhhHHHHHHhhCCcccee
Q psy17179 167 NGYAGGALYSRLGGRAWIR 185 (533)
Q Consensus 167 aGYvS~rlYk~~~g~~W~~ 185 (533)
||-=|+.++++.||++|+.
T Consensus 173 AGIRaavLWrQ~GG~Rwql 191 (213)
T d1sdia_ 173 AGIRAAVLWHQVGGGRLQL 191 (213)
T ss_dssp HHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHhCCchhhH
Confidence 7888999999999999985
No 7
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.18 E-value=5.2e+02 Score=21.09 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=18.5
Q ss_pred CCCCCCCCCchhhHHHHH------hccccchhhHHHH
Q psy17179 378 PRPIPEKKWFMEPLVIIL------LGGILPFGSIFIE 408 (533)
Q Consensus 378 pR~IP~q~wy~~~~~~~l------~~GilPF~~i~~e 408 (533)
|-+|- ..||--..+.++ ++|++..+.....
T Consensus 69 P~hI~-PEWYFL~~yaiLR~iP~kl~GVi~~~~~i~~ 104 (156)
T d1q90d_ 69 PLEIL-PEWYFYPVFQILRVVPNKLLGVLLMAAVPAG 104 (156)
T ss_dssp CSSCC-CCGGGHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCCCC-cchhhHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 44552 359987777776 6776665554444
No 8
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.70 E-value=29 Score=25.91 Aligned_cols=7 Identities=29% Similarity=0.102 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy17179 31 AFIYAVK 37 (533)
Q Consensus 31 ~l~~~I~ 37 (533)
.++++.+
T Consensus 33 ~i~~~~~ 39 (76)
T d2i4ra1 33 AVEDVLK 39 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 3444443
No 9
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.38 E-value=49 Score=24.16 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=10.8
Q ss_pred Ccch-hhhHhhccccc
Q psy17179 1 MRRK-QTFKSELNNIA 15 (533)
Q Consensus 1 ~~~~-~~~~~m~~n~~ 15 (533)
|||+ +.||+|++...
T Consensus 1 mrr~E~aFknmLk~~~ 16 (64)
T d2cqna1 1 MKRKESAFKSMLKQAA 16 (64)
T ss_dssp HHHHHHHHHHHHHTCS
T ss_pred CchHHHHHHHHHHHcC
Confidence 5665 56999997654
No 10
>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=5.99 E-value=74 Score=24.75 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=18.7
Q ss_pred eecCccccccCC-ceEEEEEEEEEeecCC
Q psy17179 89 LTSENKILLENN-AQIKFTYEVNWRPSNI 116 (533)
Q Consensus 89 V~p~s~~~l~~~-~~I~FTYSV~W~~S~v 116 (533)
+.-.|.++++++ +.-.|||+|.|.+..+
T Consensus 4 ~HveSsC~Ld~~Gt~~dF~ycvsFNK~~L 32 (94)
T d1k8ib2 4 AHVESTCVLNDAGTPQDFTYCVSFNKDLL 32 (94)
T ss_dssp EEEEEEEEEESTTCEEEECCEEEETTSCC
T ss_pred eEEeecceecCCCCccceeEEEEecCCce
Confidence 334455667665 4556999999987544
Done!