RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17179
(533 letters)
>gnl|CDD|217309 pfam02990, EMP70, Endomembrane protein 70.
Length = 518
Score = 238 bits (610), Expect = 4e-72
Identities = 88/176 (50%), Positives = 123/176 (69%), Gaps = 2/176 (1%)
Query: 149 RGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFI 208
RGSLL+ AI +YALT V GY LY G+ W R+ +L+A L P +V V+NF+
Sbjct: 292 RGSLLTAAIVLYALTGFVAGYVSARLYKTFKGKKWKRNLILTAFLFPGIVFVIFFVLNFV 351
Query: 209 AMYYHASRAIPFGTMVAVACICLFIILPLTLVGAVLG-RNLSGQQDNPCRVNAVPRPIPE 267
Y +S AIPFGT+VA+ + + +PLT +G ++G RN +G+Q P R N +PR IPE
Sbjct: 352 LWAYGSSGAIPFGTIVALLLLWFLVSVPLTFLGGIVGFRNRAGEQH-PVRTNQIPRQIPE 410
Query: 268 KKWFMEPLVIILLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVT 323
+ W++ PL IL+GGILPFG+IFIE++FIFTS W +KIYY++GF+ LVF+IL++V
Sbjct: 411 QPWYLSPLPGILMGGILPFGAIFIELFFIFTSLWLHKIYYMFGFLFLVFIILVVVC 466
Score = 236 bits (604), Expect = 2e-71
Identities = 90/180 (50%), Positives = 125/180 (69%), Gaps = 3/180 (1%)
Query: 314 LVFLILMIV-TFAPTSYSTLKTTDGTMVAVACICLFIILPLTLVGAVLG-RNLSGQQDNP 371
+VF+I ++ S+ GT+VA+ + + +PLT +G ++G RN +G+Q P
Sbjct: 340 IVFVIFFVLNFVLWAYGSSGAIPFGTIVALLLLWFLVSVPLTFLGGIVGFRNRAGEQH-P 398
Query: 372 CRVNAVPRPIPEKKWFMEPLVIILLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLV 431
R N +PR IPE+ W++ PL IL+GGILPFG+IFIE++FIFTS W +KIYY++GF+ LV
Sbjct: 399 VRTNQIPRQIPEQPWYLSPLPGILMGGILPFGAIFIELFFIFTSLWLHKIYYMFGFLFLV 458
Query: 432 FLILMIVTVCVTIVCTYFLLNAEDYRWQWTSFLAAYSTSFYVYMYSFYYFFFKTKMYGLF 491
F+IL++V VTIV TYF L AEDYRW W SFL + ST+ YV++YS YYFF K K+ G
Sbjct: 459 FIILVVVCSEVTIVLTYFQLCAEDYRWWWRSFLTSGSTAVYVFLYSIYYFFTKLKISGFV 518
Score = 102 bits (256), Expect = 4e-23
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 30/141 (21%)
Query: 18 TYCGTRLDEEKLKAFIYAVKNHYWYQMYIDDLPIWGIVGEVEE------------LSDHT 65
C +L E +K F A++ Y+ Q ID+LP+ G VG+V+
Sbjct: 49 VLCAVKLTSEDVKFFRKAIEEGYYVQWLIDNLPVAGFVGKVDNKGVGFESGFPLGFQTEE 108
Query: 66 NYYLWTHKKFDIGYNGD-----RIVDVNLT-----------SENKILLE--NNAQIKFTY 107
YYL+ H F I Y+ RIV + +T + + L+ ++ FTY
Sbjct: 109 KYYLFNHLDFVIEYHDRDNDDYRIVGIEVTPRSVKPSGCSTTSSPQELDEGKENELTFTY 168
Query: 108 EVNWRPSNIKFEHRFDKYLDP 128
V W+ S++K+ R+DKYLD
Sbjct: 169 SVKWKESDVKWASRWDKYLDA 189
>gnl|CDD|233812 TIGR02290, M3_fam_3, oligoendopeptidase, pepF/M3 family. The M3
family of metallopeptidases contains several distinct
clades. Oligoendopeptidase F as characterized in
Lactococcus, the functionally equivalent
oligoendopeptidase B of group B Streptococcus, and
closely related sequences are described by TIGR00181.
The present family is quite similar but forms a distinct
clade, and a number of species have one member of each.
A greater sequence difference separates members of
TIGR02289, probable oligoendopeptidases of the M3 family
that probably should not be designated PepF.
Length = 587
Score = 35.8 bits (83), Expect = 0.053
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 454 EDYRWQWTSFLAAYSTSFYVYMYSFYYFFFKTKMYGLFQ---TTFYFGYMALFSLG 506
E + + W Y FY Y Y+F Y F +Y ++ +F Y+AL
Sbjct: 494 ELHPYMWAYKPHFYHAPFYNYPYTFGYLFVLG-LYAKYREEGESFVPKYIALLRDT 548
>gnl|CDD|189017 cd09610, M3B_PepF_5, Peptidase family M3B Oligopeptidase F (PepF).
Peptidase family M3B Oligopeptidase F (PepF;
Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and
includes oligoendopeptidase F from Lactococcus lactis.
This enzyme hydrolyzes peptides containing between 7 and
17 amino acids with fairly broad specificity. The PepF
gene is duplicated in L. lactis on the plasmid that
bears it, while a shortened second copy is found in
Bacillus subtilis. Most bacterial PepFs are cytoplasmic
endopeptidases; however, the PepF Bacillus
amyloliquefaciens oligopeptidase is a secreted protein
and may facilitate the process of sporulation.
Specifically, the yjbG gene encoding the homolog of the
PepF1 and PepF2 oligoendopeptidases of Lactococcus
lactis has been identified in Bacillus subtilis as an
inhibitor of sporulation initiation when over expressed
from a multicopy plasmid.
Length = 472
Score = 31.8 bits (73), Expect = 0.88
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 454 EDYRWQWTSFLAAYSTSFYVYMYSF 478
E+YRW W+ T FYVY Y+F
Sbjct: 388 ENYRWWWSYIPHFIHTPFYVYAYAF 412
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 31.6 bits (72), Expect = 1.5
Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 13/99 (13%)
Query: 407 IEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTVCVTIVCTYFLLNAEDYRWQWTSFLA- 465
+ +F ++ + +++ T V IV L RW W S +
Sbjct: 929 VIFFFPMFAYILGDFVSSGSVDDFSSVGVIVFTALVVIVNLKIALEI--NRWNWISLITI 986
Query: 466 -----AYSTSFYVYMYSF--YYFFFKTKMYGLFQTTFYF 497
+ VY F F+ TF F
Sbjct: 987 WGSILVWLIFVIVYSSIFPSPAFYKAAPRVM---GTFGF 1022
>gnl|CDD|224828 COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone
shutdown protein) [Function unknown].
Length = 388
Score = 30.0 bits (68), Expect = 3.3
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 300 FWAYKIYYVYGFMLLVFLILMIVTFAPTSYSTLKT-----TDGTMVAVACICLFIILPLT 354
K+ L+ +++I +G + A+ + PL+
Sbjct: 245 SSLGKVLLGILLAALLIFLIVICFGLGGDLLLDALLQWFLFNGVLSALGALLA-GGHPLS 303
Query: 355 LVGAVLG 361
++ A L
Sbjct: 304 ILVAFLV 310
>gnl|CDD|226404 COG3887, COG3887, Predicted signaling protein consisting of a
modified GGDEF domain and a DHH domain [Signal
transduction mechanisms].
Length = 655
Score = 30.0 bits (68), Expect = 3.6
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 268 KKWFMEPLVIILLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTF 324
K + L I LG I F I I + F F W I +L+VFLI +++ F
Sbjct: 3 KFYHKRLLSYIFLGLIA-FSIILIIVSFSFNW-WLSAIAV---LLLVVFLIFLLLAF 54
Score = 29.2 bits (66), Expect = 7.0
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 384 KKWFMEPLVIILLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIV 438
K + L I LG I F I I + F F W I +L+VFLI +++
Sbjct: 3 KFYHKRLLSYIFLGLIA-FSIILIIVSFSFNW-WLSAIAV---LLLVVFLIFLLL 52
>gnl|CDD|226619 COG4135, COG4135, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 551
Score = 29.9 bits (67), Expect = 3.8
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 218 IPFGTMVAVACICLFIILPLTLVGAVLGRNLSGQQDNPCRVNAVPRPIPEKKWFMEPLVI 277
I TMV +A + L L ++ L Q+ +P +P V+
Sbjct: 348 INSLTMVLLALSASSLALLLLIL--WLEWGGIPQRRQAYLWLWLPILLPALSLVFGQQVL 405
Query: 278 ILLGGILPFGSIFIEMYFIFTSFWAY 303
L G+ + + + +F W
Sbjct: 406 ALWLGLDGSWTAVVWGHLLFVMPWVL 431
>gnl|CDD|177239 MTH00191, CYTB, cytochrome b; Provisional.
Length = 365
Score = 29.5 bits (67), Expect = 4.4
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 299 SFWAYKIYY-VYGFMLLVFLILMIVTFAP 326
F Y Y + GF +L+FL+L +V F+P
Sbjct: 216 PFHPYFSYKDILGFFILLFLLLFLVLFSP 244
>gnl|CDD|219921 pfam08592, DUF1772, Domain of unknown function (DUF1772). This
domain is of unknown function.
Length = 137
Score = 28.4 bits (64), Expect = 5.0
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 305 IYYVYGFMLLVFLILMIVTFAPTSYSTLKTTDGT----MVAVACICLFIILPLTLVGAV 359
I + +F + FA + L+ G ++A A + L ++P+TL+ V
Sbjct: 29 INRRGPAFMPLFAGTSALLFAYLAVLALRGRGGPGSRLLLAAAALYLLGVVPVTLLFNV 87
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 29.6 bits (67), Expect = 5.2
Identities = 27/145 (18%), Positives = 46/145 (31%), Gaps = 22/145 (15%)
Query: 378 PRPIPEKKWFM-EPLVIILLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILM 436
PR E + IL+ G+L +I FI T + L +F L+
Sbjct: 766 PRGPEEGLFNRKIFWRFILIIGLL--SAIL----FILTFLLYLLGFIANTLGLDLFQALL 819
Query: 437 IVTVCVTIVCTYFLLNAEDYRWQWTSFL-----------AAYSTSFYVYMYSFYYFFFKT 485
T +V LL R + FL A + + +
Sbjct: 820 QTTAFTVLVLI-QLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNL 878
Query: 486 KMYGLFQTTFYFGYMALFSLGLGIM 510
K+ FQ T + L ++ + ++
Sbjct: 879 KI---FQPTPLSLFEWLIAIAVALL 900
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 28.7 bits (65), Expect = 5.5
Identities = 14/85 (16%), Positives = 26/85 (30%)
Query: 427 FMLLVFLILMIVTVCVTIVCTYFLLNAEDYRWQWTSFLAAYSTSFYVYMYSFYYFFFKTK 486
F+ V+ +L + + V L + + F + ++ F F K
Sbjct: 3 FLRKVYGLLALGLLLTAAVAYLVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRIKK 62
Query: 487 MYGLFQTTFYFGYMALFSLGLGIMC 511
F + L L LG +
Sbjct: 63 KSSSAALALLFLFTLLEGLTLGPIL 87
>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein
[Function unknown].
Length = 827
Score = 29.3 bits (66), Expect = 6.3
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 423 YVYGFMLLVFLILMIVTVCVTIVCTYFLLNAEDYRWQWTSFLAAYSTSFYVYMYSFYY 480
+ +G +L ++L +T+C +I+ LL + ++ Y Y+ Y
Sbjct: 603 FQFGTVLPQPILLFTITICYSIISPLILLFG----------AVYFILNYLAYKYNLIY 650
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 29.3 bits (67), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 96 LLENNAQIKFTYEVNWRPSNIKFEHRFDKYLD 127
+LE N +I NW P +IK + RF K+L+
Sbjct: 417 MLELNQKI------NWYPEHIK-DGRFGKWLE 441
>gnl|CDD|224190 COG1271, CydA, Cytochrome bd-type quinol oxidase, subunit 1 [Energy
production and conversion].
Length = 457
Score = 29.1 bits (66), Expect = 6.8
Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 39/128 (30%)
Query: 339 MVAVACICLFIILPLTLVGAVLGRNLSGQQDNPCRVNAVPRPIPEKKWFMEPLVIILLGG 398
+ V L I L L+ L I + KW L ++L
Sbjct: 330 RIMVGLGFLMI--LLALLALWLTL---------------RGRIDQSKWL---LKALILAI 369
Query: 399 ILPFGSIFIEMYFIFTSF----WAYKIYYV-----------YGFMLLVFLILMIVTVCVT 443
LP+ I IE +I T W +Y V G +L ++ M++ +
Sbjct: 370 PLPW--IAIEAGWIVTEVGRQPWV--VYGVLKTDVVSSAVTAGSVLFSLILFMVLYTVLL 425
Query: 444 IVCTYFLL 451
I Y LL
Sbjct: 426 IAEVYLLL 433
>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 573
Score = 29.0 bits (66), Expect = 7.3
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 2/114 (1%)
Query: 390 PLVIILLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTVCVTIVCTYF 449
L +ILLGG L + + + + S YK+ G M + + +
Sbjct: 458 TLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSL 517
Query: 450 LLNAEDYRWQWTSFLAAYSTSFYVYMYSFYYFFFKTKMYGLFQTTFYFGYMALF 503
L + D W+ + ++ S + + ++ +F + L
Sbjct: 518 SLKSFD--QGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLLWMIILL 569
>gnl|CDD|233993 TIGR02745, ccoG_rdxA_fixG, cytochrome c oxidase accessory protein
FixG. Member of this ferredoxin-like protein family are
found exclusively in species with an operon encoding the
cbb3 type of cytochrome c oxidase (cco-cbb3), and near
the cco-cbb3 operon in about half the cases. The
cco-cbb3 is found in a variety of proteobacteria and
almost nowhere else, and is associated with oxygen use
under microaerobic conditions. Some (but not all) of
these proteobacteria are also nitrogen-fixing, hence the
gene symbol fixG. FixG was shown essential for
functional cco-cbb3 expression in Bradyrhizobium
japonicum.
Length = 434
Score = 28.8 bits (65), Expect = 7.8
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 408 EMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTV 440
+ +F +FW + Y + G +++ L L +T
Sbjct: 38 QFHFFGITFWPQEFYLLAGLLIIAALGLFFITT 70
>gnl|CDD|236882 PRK11204, PRK11204, N-glycosyltransferase; Provisional.
Length = 420
Score = 28.7 bits (65), Expect = 9.0
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 289 IFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTFAPTSYST---LKTTDGTMVAVACI 345
+F E +I + WA Y +LL++LI +V P L G ++ C+
Sbjct: 301 LFFE--YILSILWA----YTMLLILLLWLIGQLVPLPPNIEVYSFSLPHWSGILLTFTCL 354
Query: 346 CLFII 350
FI+
Sbjct: 355 LQFIV 359
>gnl|CDD|238507 cd01036, ClC_euk, Chloride channel, ClC. These domains are found
in the eukaryotic halogen ion (Cl-, Br- and I-) channel
proteins that perform a variety of functions including
cell volume regulation, membrane potential
stabilization, charge compensation necessary for the
acidification of intracellular organelles, signal
transduction and transepithelial transport. They are
also involved in many pathophysiological processes and
are responsible for a number of human diseases. These
proteins belong to the ClC superfamily of chloride ion
channels, which share the unique double-barreled
architecture and voltage-dependent gating mechanism.
The gating is conferred by the permeating anion itself,
acting as the gating charge. Some proteins possess long
C-terminal cytoplasmic regions containing two CBS
(cystathionine beta synthase) domains of putative
regulatory function.
Length = 416
Score = 28.5 bits (64), Expect = 9.8
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 20/91 (21%)
Query: 170 AGGALYSRLGGRA--WIRHCLLSAC-----LVPVLV-CATALV------VNFIAMYYHAS 215
AL+ RL W R L L PVL + + + F+ +Y+ S
Sbjct: 248 LLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHYAPTLLLFLLIYFWMS 307
Query: 216 RAIPFGTMVAVACICLFIILPLTLVGAVLGR 246
A+ FG V +P ++GA +GR
Sbjct: 308 -ALAFGIAV-----PGGTFIPSLVIGAAIGR 332
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.145 0.470
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,360,085
Number of extensions: 2933779
Number of successful extensions: 6830
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6356
Number of HSP's successfully gapped: 585
Length of query: 533
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 432
Effective length of database: 6,457,848
Effective search space: 2789790336
Effective search space used: 2789790336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 61 (27.2 bits)