RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17179
(533 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 3e-07
Identities = 43/225 (19%), Positives = 75/225 (33%), Gaps = 61/225 (27%)
Query: 50 PIWGIVG----EVEELSDHTNYYLWTHKKFDIG-YNGDRIVDV-----NLTSENKILLE- 98
P+ I +V++ + TN +L K+ +I NG + + V +L N L +
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 99 ------NNAQIKFTYEVNWRPSNIKFEHRFDKYLDPTF--FQHRGLQHLFGYFSVLMGRG 150
+ ++I F+ R +KF +RF P F H L ++
Sbjct: 397 KAPSGLDQSRIPFSE----RK--LKFSNRF----LPVASPF-HS--HLLVPASDLINKDL 443
Query: 151 SLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLV-CATALVVNF-I 208
+ + + PV Y G +LS + +V C L V +
Sbjct: 444 VKNNVSFNAKDIQIPV--------YDTFDGSDL---RVLSGSISERIVDCIIRLPVKWET 492
Query: 209 AMYYHASRAIPFGTMVAVACICLFIILPLTL--VGAVLGRNLSGQ 251
+ A+ + FG P +G + RN G
Sbjct: 493 TTQFKATHILDFG--------------PGGASGLGVLTHRNKDGT 523
Score = 35.8 bits (82), Expect = 0.047
Identities = 38/204 (18%), Positives = 57/204 (27%), Gaps = 58/204 (28%)
Query: 78 GYNGDRIVD--VNLTSENKILLENNAQIKFTYEVNWRPSNIKFEHRFDKYLDPTFFQHRG 135
G G RI + + E + + + F E+N ++ F L T F
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFK-EINEHSTSYTFRSEKGL-LSATQFTQPA 1735
Query: 136 LQHLFGY--FSVLMGRGSLLSTAIFV------Y-ALTSPVNGYAGGAL---------YSR 177
L L F L +G + + A F Y AL S + + R
Sbjct: 1736 LT-LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALAS-----LADVMSIESLVEVVFYR 1789
Query: 178 LGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIPFGTMVAVAC--ICLFIIL 235
G VP + M AI G + A +++
Sbjct: 1790 --GMT-------MQVAVPRDELGRSNY----GMI-----AINPGRVAASFSQEALQYVV- 1830
Query: 236 PLTLVGAVLGR-------NLSGQQ 252
VG G N+ QQ
Sbjct: 1831 --ERVGKRTGWLVEIVNYNVENQQ 1852
Score = 33.9 bits (77), Expect = 0.19
Identities = 48/245 (19%), Positives = 67/245 (27%), Gaps = 101/245 (41%)
Query: 30 KAFIYAV------KNHYW------YQMY---IDDLPIWGIVGEVEELSDHTNYYLWTHKK 74
A + A+ + Y+ YQ Y + DL I + EL T K
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL-IKFSAETLSELIRTTLD---AEKV 208
Query: 75 FDIGYNGDRIVDVNLTSENKILLENNAQIKFTYEVNWRPSNIKFEHRFDKYLD--PTFFQ 132
F G N I++ LEN + P YL P
Sbjct: 209 FTQGLN---ILE---------WLENPSN---------TPD--------KDYLLSIP---- 235
Query: 133 HRGLQHLFGYFSV-LMGRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSA 191
S L+G ++ A Y +T+ + G+ G L S L G
Sbjct: 236 ----------ISCPLIG---VIQLA--HYVVTAKLLGFTPGELRSYLKG----------- 269
Query: 192 CLVPVLVCATALVV-NFIAMYYHASRAIPFGTMVAVACICLFIILPLTLVGAVLGRNLSG 250
+ LV IA F V A LF I G +
Sbjct: 270 ----ATGHSQGLVTAVAIAE---TDSWESFFVSVRKAITVLFFI------G------VRC 310
Query: 251 QQDNP 255
+ P
Sbjct: 311 YEAYP 315
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.003
Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 34/154 (22%)
Query: 4 KQTFKSELNNIAKTTYCGTRLDEEKLKAFIYAVKNHYWYQMYI--DDLPI--------WG 53
K +L I +++ L+ + + + ++ + I W
Sbjct: 348 KHVNCDKLTTIIESSL--NVLEPAEYR--------KMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 54 --IVGEVEELSDH-TNYYL---WTHKKFDIGYNGDRIVDVNLTSENKILLENNAQIKFTY 107
I +V + + Y L K+ I +++ + EN+ L + I Y
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQP-KESTISIP-SIYLELKVKLENEYAL--HRSIVDHY 453
Query: 108 EVNWRPSNIKFEHRFDKYLDPTFFQHRGLQHLFG 141
+ P + YLD F+ H G HL
Sbjct: 454 NI---PKTFDSDDLIPPYLDQYFYSHIG-HHLKN 483
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal
transduction, photocycle ST membrane protein; HET: BOG
RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Length = 122
Score = 31.3 bits (70), Expect = 0.24
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 190 SACLVPVLVCATALVVNF-IAMYYHASRAIPFGT--------MVAVACICLFIILPLTLV 240
+ + V + AL V F Y + A G + A+ + + + + L LV
Sbjct: 18 TGKMGAVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLV 77
Query: 241 GAVLGRNLSG 250
A LG + +
Sbjct: 78 AATLGGDTAA 87
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 30.0 bits (68), Expect = 2.3
Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 33/142 (23%)
Query: 375 NAVPRPIPEKKWFMEPL--VIILLGGILPFGSI--FIEMYFIFTSFWAYKIYYVYGFMLL 430
NA P K W + L + +LLG +L G+ MY + + + +L
Sbjct: 740 NAPYSQTPVK-WNLPKLWGMSVLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLF 798
Query: 431 VFLIL----------------------------MIVTVCVTIVCTYFLLNAEDYRWQWTS 462
+ + L +V + T + D
Sbjct: 799 LQISLTENWLIFITRANGPFWSSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVV 858
Query: 463 FLAAYSTSFYVYMYSFYYFFFK 484
+ +S + M YY
Sbjct: 859 RIWIFSFGIFCIMGGVYYILQD 880
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT;
1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A*
3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A*
3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A*
3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ...
Length = 903
Score = 28.7 bits (63), Expect = 5.5
Identities = 8/87 (9%), Positives = 22/87 (25%), Gaps = 17/87 (19%)
Query: 25 DEEKLKAFIYAVKNHYWYQMYIDDLPIWGIVGEVEELSDHT----------------NYY 68
EE L+ + + + Q+ + + + N
Sbjct: 756 GEESLQEYFKEFEKEF-RQLNYISIASVSSANNIAKYDVGGFPGPKCPFHIRGILTYNRA 814
Query: 69 LWTHKKFDIGYNGDRIVDVNLTSENKI 95
+ + G+++ + L N
Sbjct: 815 IKGNIDAPQVVEGEKVYVLPLREGNPF 841
>1hn0_A Chondroitin ABC lyase I; chondroitinase ABC I, chonroitin
digestion, mechanism; 1.90A {Proteus vulgaris} SCOP:
a.102.3.2 b.18.1.17 b.24.1.1 b.30.5.2
Length = 1021
Score = 28.3 bits (62), Expect = 7.7
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 22/135 (16%)
Query: 38 NHYWYQ----------MYIDDLPIWGIVGEVEELSDHTNYYLWTHKKFDIGYNGDRIVDV 87
+H+ Y M D L + +V + + + + + +
Sbjct: 388 HHWGYSSRWWYISTLLMS-DALKEANLQTQVYDSLLWYSREFKSSFDMKVSADSSDLDYF 446
Query: 88 NLTSENKI---LLENNAQIK------FTYEVNWRPSNIKFEHRFDKYLDPTFFQHRGLQH 138
N S + LLE + Q + F++ + + + + D T ++H G +
Sbjct: 447 NTLSRQHLALLLLEPDDQKRINLVNTFSHYITGALTQVPPGGKDGLRPDGTAWRHEG--N 504
Query: 139 LFGYFSVLMGRGSLL 153
GY S L
Sbjct: 505 YPGYSFPAFKNASQL 519
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell
membrane, MEM protein transport, translocation,
transmembrane, transport; 3.30A {Thermus thermophilus}
PDB: 2rrn_A
Length = 741
Score = 28.2 bits (63), Expect = 7.8
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 200 ATALVVNFIAMYYHASRAIPFGTMVAVACIC--LFIILPLTLVGAVL 244
T + I YY G + ++ + I+ L+ +GA L
Sbjct: 281 GTLAIFLLIFAYYG----PHLGLVASLGLLYTSALILGLLSGLGATL 323
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.145 0.470
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,469,053
Number of extensions: 521120
Number of successful extensions: 1661
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1655
Number of HSP's successfully gapped: 54
Length of query: 533
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 435
Effective length of database: 3,965,535
Effective search space: 1725007725
Effective search space used: 1725007725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.1 bits)