Query psy1718
Match_columns 142
No_of_seqs 101 out of 188
Neff 2.3
Searched_HMMs 13730
Date Fri Aug 16 23:54:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1718.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1718hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oywa2 c.37.1.19 (A:1-206) Re 39.6 7.6 0.00055 25.7 2.2 56 16-73 12-79 (206)
2 d1bqua1 b.1.2.1 (A:5-99) Cytok 20.6 25 0.0019 20.3 2.0 20 96-115 6-25 (95)
3 d1g47a1 g.39.1.3 (A:1-35) Pinc 20.6 11 0.00082 21.7 0.2 8 25-32 15-22 (35)
4 d2h26a1 b.1.1.2 (A:184-279) CD 15.1 32 0.0023 21.2 1.5 33 103-135 26-58 (96)
5 d1hdmb1 b.1.1.2 (B:88-185) Cla 14.1 45 0.0033 20.7 2.1 33 103-135 27-60 (98)
6 d1te7a_ b.122.1.7 (A:) Hypothe 13.4 26 0.0019 24.1 0.7 30 67-96 3-40 (103)
7 d1x5ja1 b.1.2.1 (A:8-107) Neog 13.3 56 0.0041 18.3 2.2 20 96-115 4-23 (100)
8 d1tuaa1 d.51.1.1 (A:1-84) Hypo 13.2 40 0.0029 21.1 1.6 23 14-38 59-82 (84)
9 d2hzaa1 a.43.1.3 (A:1-48) Nick 13.2 40 0.0029 19.8 1.5 18 8-25 23-40 (48)
10 d1sfxa_ a.4.5.50 (A:) Hypothet 13.2 76 0.0056 19.4 3.0 15 25-39 16-30 (109)
No 1
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=39.65 E-value=7.6 Score=25.72 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=32.8
Q ss_pred HHHHHhhhhccc---cchhHhHHHHhhccch---------hhHHHHHHhhhhceeecceEEEeecCCcch
Q psy1718 16 FTRDLVREVCGH---APYEKRAMELLKVSKD---------KRALKFLKRRVSLYVLRSAVVLCPTKSRKF 73 (142)
Q Consensus 16 fVRdiIREV~GF---APYERRaMELLKVSKD---------KRALKFaKKRLGTHiRr~~~~~~~~~~~~~ 73 (142)
-++++++|..|| .||-..+++.+-.++| .+.+=|.=--+- ....+++++||+.-.-
T Consensus 12 ~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~--~~~~~~~v~P~~~L~~ 79 (206)
T d1oywa2 12 GAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL--LNGLTVVVSPLISLMK 79 (206)
T ss_dssp HHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH--SSSEEEEECSCHHHHH
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhh--ccCceEEeccchhhhh
Confidence 478999999865 5888888887764332 122222111111 1235678888876443
No 2
>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.62 E-value=25 Score=20.32 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=16.8
Q ss_pred CceeeeeccccccceeEeee
Q psy1718 96 PTTFVKCESFYHNSIMLTWY 115 (142)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ 115 (142)
|..-+.|.+.-..+|++.|=
T Consensus 6 ~P~n~~~~~~~~~si~~~W~ 25 (95)
T d1bqua1 6 KPKNLSCIVNEGKKMRCEWD 25 (95)
T ss_dssp CCEEEEEEEETTSCCEEEEE
T ss_pred CCeeeEEEEccCCEEEEEEe
Confidence 44568999999999999994
No 3
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.56 E-value=11 Score=21.73 Aligned_cols=8 Identities=63% Similarity=0.796 Sum_probs=7.0
Q ss_pred ccccchhH
Q psy1718 25 CGHAPYEK 32 (142)
Q Consensus 25 ~GFAPYER 32 (142)
.||+|.||
T Consensus 15 ~gF~p~Ek 22 (35)
T d1g47a1 15 GGFAPAEK 22 (35)
T ss_dssp CBCCSTTT
T ss_pred cCCCchHH
Confidence 59999997
No 4
>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}
Probab=15.09 E-value=32 Score=21.15 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=20.4
Q ss_pred ccccccceeEeeeeccCCCccccCCCCCCcccc
Q psy1718 103 ESFYHNSIMLTWYKLSTKPQRLFTPTPRPRVSG 135 (142)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (142)
..||-..|.++|++-...-+.-.+..+.|.-.|
T Consensus 26 ~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dg 58 (96)
T d2h26a1 26 SGFYPKPVWVMWMRGEQEQQGTQLGDILPNANW 58 (96)
T ss_dssp EEEBSSCEEEEEEETTEECTTCEECCCEECTTS
T ss_pred EEEECCCcEEEEEECcccCCCceeCccEeCCCC
Confidence 579999999999985433333333344444333
No 5
>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=14.07 E-value=45 Score=20.65 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=21.1
Q ss_pred ccccccceeEeeeeccC-CCccccCCCCCCcccc
Q psy1718 103 ESFYHNSIMLTWYKLST-KPQRLFTPTPRPRVSG 135 (142)
Q Consensus 103 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 135 (142)
..||-..|.++|.+-.. .++...+..++|...|
T Consensus 27 ~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dg 60 (98)
T d1hdmb1 27 WGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDW 60 (98)
T ss_dssp EEEBSSCCEEEEEETTEECCCCCSBCCCEECSSS
T ss_pred EEEECCCCEEEEEECCEeccCCeEeCceEECCCC
Confidence 58999999999997443 2333444445554443
No 6
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=13.42 E-value=26 Score=24.07 Aligned_cols=30 Identities=37% Similarity=0.591 Sum_probs=24.9
Q ss_pred ecCCcchhhhhhhh--------hhcccccceeeccccC
Q psy1718 67 PTKSRKFDRATRDI--------IRDRESSHFQLSQKIP 96 (142)
Q Consensus 67 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 96 (142)
||+---|.|-..|| |||...|||+-.|-++
T Consensus 3 p~~ITFFeRfe~dIlsGkKTITIRD~SEshy~pG~~v~ 40 (103)
T d1te7a_ 3 PNDITFFQRFQDDILAGRKTITIRDESESHFKTGDVLR 40 (103)
T ss_dssp CCSCCCCHHHHHHHHTCCCEEEEECGGGCCCCTTSEEE
T ss_pred CceeehhHhhhHHHhcCCceEEeccchhcccCCCCEEE
Confidence 78888899999998 6888889998776554
No 7
>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.30 E-value=56 Score=18.32 Aligned_cols=20 Identities=30% Similarity=0.595 Sum_probs=17.2
Q ss_pred CceeeeeccccccceeEeee
Q psy1718 96 PTTFVKCESFYHNSIMLTWY 115 (142)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ 115 (142)
|.+-|.|+.-=+++|.++|=
T Consensus 4 pP~~v~~~~~s~tsi~v~W~ 23 (100)
T d1x5ja1 4 PPVGVQASILSHDTIRITWA 23 (100)
T ss_dssp CCEEEEEEEEETTEEEEEEE
T ss_pred CCcCeEEEEecCCEEEEEEc
Confidence 55678999999999999995
No 8
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=13.23 E-value=40 Score=21.14 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=17.5
Q ss_pred hHHHHHHhhhh-ccccchhHhHHHHh
Q psy1718 14 TKFTRDLVREV-CGHAPYEKRAMELL 38 (142)
Q Consensus 14 tKfVRdiIREV-~GFAPYERRaMELL 38 (142)
..-++++|+++ -||+|=. +|+||
T Consensus 59 ~~~a~~iI~aI~rGf~Pe~--a~~ll 82 (84)
T d1tuaa1 59 LMKAAEVVKAISLGFPPEK--AFRLL 82 (84)
T ss_dssp HHHHHHHHHHHHHTCCHHH--HGGGG
T ss_pred HHHHHHHHHHHhCCCChHH--HHHhc
Confidence 34589999999 5999963 77776
No 9
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.21 E-value=40 Score=19.75 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=14.1
Q ss_pred CCCCcchHHHHHHhhhhc
Q psy1718 8 GIQTKNTKFTRDLVREVC 25 (142)
Q Consensus 8 G~lTKrtKfVRdiIREV~ 25 (142)
+.-+-|..+|||+||+..
T Consensus 23 ~gy~nRSEaIRdliR~~l 40 (48)
T d2hzaa1 23 RGYNNRSEAIRDILRSAL 40 (48)
T ss_dssp TTCCSHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHH
Confidence 446678899999999853
No 10
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=13.17 E-value=76 Score=19.42 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=13.4
Q ss_pred ccccchhHhHHHHhh
Q psy1718 25 CGHAPYEKRAMELLK 39 (142)
Q Consensus 25 ~GFAPYERRaMELLK 39 (142)
.||.|+|-+++..|-
T Consensus 16 lGlt~~e~~v~~~L~ 30 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLLL 30 (109)
T ss_dssp TCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 999999999988775
Done!