RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1718
         (142 letters)



>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia
          coli [TaxId: 562]}
          Length = 103

 Score = 25.8 bits (57), Expect = 1.1
 Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 8/38 (21%)

Query: 67 PTKSRKFDRATRDI--------IRDRESSHFQLSQKIP 96
          P     F R   DI        IRD   SHF+    + 
Sbjct: 3  PNDITFFQRFQDDILAGRKTITIRDESESHFKTGDVLR 40


>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
          Length = 967

 Score = 24.6 bits (53), Expect = 6.9
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 100 VKCESFYHNSIMLTW-YKLSTKPQRL----FTPTPRPRVSGWAL 138
           V C+S Y   I + W    S  PQ L    F   P+ ++   A+
Sbjct: 567 VYCDSVYRADIPIEWKLHQSVDPQDLLFGVFGIVPQYQILNEAV 610


>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda
           constant domain, CL-lambda {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 102

 Score = 23.4 bits (50), Expect = 8.8
 Identities = 10/57 (17%), Positives = 17/57 (29%)

Query: 86  SSHFQLSQKIPTTFVKCESFYHNSIMLTWYKLSTKPQRLFTPTPRPRVSGWALCVWS 142
            S  +L     T       FY  ++ + W   S+  +     T   + S       S
Sbjct: 13  PSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASS 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 502,599
Number of extensions: 19952
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 12
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.7 bits)