Query psy17180
Match_columns 130
No_of_seqs 110 out of 480
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 23:55:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1277|consensus 100.0 1.7E-45 3.8E-50 318.3 10.0 104 1-104 220-324 (593)
2 KOG1278|consensus 100.0 1.7E-40 3.8E-45 291.4 7.3 113 4-120 263-390 (628)
3 PF02990 EMP70: Endomembrane p 100.0 8.2E-37 1.8E-41 266.3 6.5 116 2-121 195-325 (521)
4 KOG1278|consensus 95.7 0.0036 7.7E-08 56.8 0.8 26 105-130 505-530 (628)
5 PF02990 EMP70: Endomembrane p 91.3 0.033 7.1E-07 49.4 -1.6 28 103-130 438-465 (521)
6 PF11676 DUF3272: Protein of u 69.7 3.5 7.5E-05 27.3 1.7 31 84-114 4-36 (61)
7 PF13038 DUF3899: Domain of un 69.6 10 0.00022 25.7 4.2 6 55-60 58-63 (92)
8 PF06679 DUF1180: Protein of u 58.3 12 0.00026 29.0 3.2 20 15-34 100-119 (163)
9 PF12270 Cyt_c_ox_IV: Cytochro 54.1 94 0.002 23.5 7.5 29 6-35 34-62 (137)
10 PF14093 DUF4271: Domain of un 54.1 72 0.0016 24.4 6.9 10 116-125 84-93 (208)
11 PF14851 FAM176: FAM176 family 53.7 8.6 0.00019 29.6 1.6 23 13-36 31-53 (153)
12 PF11368 DUF3169: Protein of u 45.7 90 0.002 24.9 6.5 17 77-93 102-118 (248)
13 PRK11246 hypothetical protein; 39.5 48 0.001 27.0 3.9 27 11-37 162-188 (218)
14 PF04191 PEMT: Phospholipid me 38.3 1.2E+02 0.0026 20.2 5.6 19 59-77 41-59 (106)
15 COG4115 Uncharacterized protei 37.1 9.8 0.00021 26.7 -0.3 15 102-116 46-60 (84)
16 PF12133 Sars6: Open reading f 36.6 60 0.0013 21.3 3.3 35 10-44 18-54 (62)
17 PF12669 P12: Virus attachment 35.9 45 0.00098 21.4 2.7 22 16-37 4-25 (58)
18 PF10104 Brr6_like_C_C: Di-sul 31.7 93 0.002 23.0 4.2 28 10-39 8-35 (135)
19 COG5500 Predicted integral mem 30.6 57 0.0012 25.0 2.9 32 71-106 55-86 (159)
20 PF01484 Col_cuticle_N: Nemato 28.7 50 0.0011 19.7 1.9 26 15-40 7-32 (53)
21 KOG2131|consensus 27.9 22 0.00048 31.4 0.3 21 55-75 207-227 (427)
22 COG3290 CitA Signal transducti 27.2 93 0.002 28.6 4.1 35 6-40 172-206 (537)
23 PF11368 DUF3169: Protein of u 26.1 1E+02 0.0023 24.5 3.9 14 28-41 68-81 (248)
24 PF00558 Vpu: Vpu protein; In 25.4 1E+02 0.0022 21.4 3.2 17 13-29 11-27 (81)
25 PLN00010 cyclin-dependent kina 22.5 42 0.00091 23.7 0.8 23 51-75 45-67 (86)
26 PF07698 7TM-7TMR_HD: 7TM rece 22.4 1.4E+02 0.0031 22.3 3.8 89 7-98 1-99 (194)
27 PF06196 DUF997: Protein of un 21.9 1.7E+02 0.0037 20.0 3.7 30 6-37 44-73 (80)
28 PF07219 HemY_N: HemY protein 21.3 1.8E+02 0.0039 20.2 3.9 23 12-34 17-39 (108)
No 1
>KOG1277|consensus
Probab=100.00 E-value=1.7e-45 Score=318.27 Aligned_cols=104 Identities=70% Similarity=1.200 Sum_probs=99.2
Q ss_pred CCceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc-cchhhhhcccccCceeeeccccCCCCCchhhhhhh
Q psy17180 1 MLYKIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKDEE-VDDMERDLGDEYGWKQVHGDVFRPSPHPMLFSALI 79 (130)
Q Consensus 1 ~~~~iHW~SiiNS~iivllLs~iv~~IL~R~l~~D~~~y~~~~~-~~~~e~~~~e~~GWKlih~DVFR~P~~~~LLs~lv 79 (130)
+||+|||+||+||++.|++|+++|++||+|+||||.+||++++| .++.|+|++||.|||++||||||||+|+.|||+++
T Consensus 220 f~h~IHWfSIfNSfmmVifLvGlvamILMRtLrnDyarY~~dee~~d~~d~d~~~E~GWK~vHgDVFR~p~~~~Lfsa~l 299 (593)
T KOG1277|consen 220 FPHRIHWFSIFNSFMMVIFLVGLVAMILMRTLRNDYARYAKDEEALDDMDRDDQEEYGWKQVHGDVFRFPSHPLLFSAVL 299 (593)
T ss_pred ccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhccccccccccccceeeecccccCCCccHHHHHHh
Confidence 57899999999999999999999999999999999999999887 67778899999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhhccccc
Q psy17180 80 GTGYQITTVTLSVILFAIVGDLYTE 104 (130)
Q Consensus 80 G~GvQll~m~~~~l~~a~lG~~~p~ 104 (130)
|+|+|++..+++++++|.+|.++|.
T Consensus 300 GsG~Qlf~l~~~ii~~Alvg~fy~~ 324 (593)
T KOG1277|consen 300 GSGAQLFTLVLIIIMLALVGVFYTE 324 (593)
T ss_pred ccccchHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999888876
No 2
>KOG1278|consensus
Probab=100.00 E-value=1.7e-40 Score=291.37 Aligned_cols=113 Identities=44% Similarity=0.830 Sum_probs=106.7
Q ss_pred eehhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhhhcccccCceeeeccccCCCCCchhhhhhhchhH
Q psy17180 4 KIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKDEEVDDMERDLGDEYGWKQVHGDVFRPSPHPMLFSALIGTGY 83 (130)
Q Consensus 4 ~iHW~SiiNS~iivllLs~iv~~IL~R~l~~D~~~y~~~~~~~~~e~~~~e~~GWKlih~DVFR~P~~~~LLs~lvG~Gv 83 (130)
|||||||+||+++|++|+++|++|++||+|||++|||++|.+ ||.+||+|||++||||||||+++++||+++|+|+
T Consensus 263 qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~~----~d~~Ee~GWKLVhGDVFR~P~~~~lLsv~vGsGv 338 (628)
T KOG1278|consen 263 QIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDLD----DDAQEESGWKLVHGDVFRPPRNSMLLSVLVGSGV 338 (628)
T ss_pred ceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccch----hhhhhhcceEEeecccccCCCCCeEEEEEeccCh
Confidence 999999999999999999999999999999999999987653 3558999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccc-----------e----eeehhhhhHHHHHH
Q psy17180 84 QITTVTLSVILFAIVGDLYTEY-----------F----IFTSFWAYKIYYVY 120 (130)
Q Consensus 84 Qll~m~~~~l~~a~lG~~~p~~-----------~----i~~~~~~~~~~~~~ 120 (130)
|+++|+++++++||+|+++|+. | +.|||=|.|.||.+
T Consensus 339 Q~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~ 390 (628)
T KOG1278|consen 339 QLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTF 390 (628)
T ss_pred hhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhh
Confidence 9999999999999999999994 2 78999999999986
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=8.2e-37 Score=266.35 Aligned_cols=116 Identities=47% Similarity=0.915 Sum_probs=107.0
Q ss_pred CceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhhhcccccCceeeeccccCCCCCchhhhhhhch
Q psy17180 2 LYKIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKDEEVDDMERDLGDEYGWKQVHGDVFRPSPHPMLFSALIGT 81 (130)
Q Consensus 2 ~~~iHW~SiiNS~iivllLs~iv~~IL~R~l~~D~~~y~~~~~~~~~e~~~~e~~GWKlih~DVFR~P~~~~LLs~lvG~ 81 (130)
++++||+|++||+++|++|+++|++|++|++|||++|||+.++++ |.+||+|||++||||||||+++++||+++|+
T Consensus 195 ~~~ihw~SiiNS~iivl~L~~~v~~Il~R~l~~D~~~y~~~~~~~----~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~ 270 (521)
T PF02990_consen 195 DSQIHWFSIINSFIIVLFLSGLVAIILLRTLRRDISRYNDEDSEE----DDQEESGWKLVHGDVFRPPKHPMLLSALVGT 270 (521)
T ss_pred CCceEEEeHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc----ccccccchhhhhHHHhcCcCCchHHHhHhcc
Confidence 358999999999999999999999999999999999999876532 4578999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcccccc-----------e----eeehhhhhHHHHHHH
Q psy17180 82 GYQITTVTLSVILFAIVGDLYTEY-----------F----IFTSFWAYKIYYVYG 121 (130)
Q Consensus 82 GvQll~m~~~~l~~a~lG~~~p~~-----------~----i~~~~~~~~~~~~~~ 121 (130)
|+|+++|+++++++|++|+++|+. | +.|||-|.|+|+.+|
T Consensus 271 G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~ 325 (521)
T PF02990_consen 271 GIQLLFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFG 325 (521)
T ss_pred hhhhhHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 999999999999999999999983 2 678999999999775
No 4
>KOG1278|consensus
Probab=95.73 E-value=0.0036 Score=56.80 Aligned_cols=26 Identities=50% Similarity=1.316 Sum_probs=24.5
Q ss_pred ceeeehhhhhHHHHHHHHHHHHhhhC
Q psy17180 105 YFIFTSFWAYKIYYVYGFMLLVFLIL 130 (130)
Q Consensus 105 ~~i~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
.||+.++|..+.||+|||+|+||.||
T Consensus 505 fFI~~SiW~~qfYY~FGFLFlvfiiL 530 (628)
T KOG1278|consen 505 FFILSSIWLNQFYYMFGFLFLVFIIL 530 (628)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 47999999999999999999999986
No 5
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=91.26 E-value=0.033 Score=49.36 Aligned_cols=28 Identities=57% Similarity=1.350 Sum_probs=25.0
Q ss_pred ccceeeehhhhhHHHHHHHHHHHHhhhC
Q psy17180 103 TEYFIFTSFWAYKIYYVYGFMLLVFLIL 130 (130)
Q Consensus 103 p~~~i~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
.-+||++++|.++.|++||+++++|.++
T Consensus 438 El~~i~~s~W~~~~y~~fgfl~~~~~ll 465 (521)
T PF02990_consen 438 ELYFIFSSLWSNKFYYLFGFLLLVFILL 465 (521)
T ss_pred HHHHHHHHhhcCcceEEehHHHHHHHHH
Confidence 3469999999999999999999999874
No 6
>PF11676 DUF3272: Protein of unknown function (DUF3272); InterPro: IPR021690 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=69.66 E-value=3.5 Score=27.34 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhh--cccccceeeehhhhh
Q psy17180 84 QITTVTLSVILFAIVG--DLYTEYFIFTSFWAY 114 (130)
Q Consensus 84 Qll~m~~~~l~~a~lG--~~~p~~~i~~~~~~~ 114 (130)
|+++|++.+.+=.-+= .+-...|++|++||.
T Consensus 4 qFi~mal~ta~EtyfFN~ai~~g~y~~A~Fw~~ 36 (61)
T PF11676_consen 4 QFIFMALFTAFETYFFNEAIMSGDYFFAFFWGF 36 (61)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 7888887776655331 222567999999984
No 7
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=69.58 E-value=10 Score=25.74 Aligned_cols=6 Identities=17% Similarity=0.197 Sum_probs=2.3
Q ss_pred ccCcee
Q psy17180 55 EYGWKQ 60 (130)
Q Consensus 55 ~~GWKl 60 (130)
+.-+|.
T Consensus 58 ~~~~~~ 63 (92)
T PF13038_consen 58 DKKLKK 63 (92)
T ss_pred hHHHHH
Confidence 333443
No 8
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=58.28 E-value=12 Score=29.00 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17180 15 MMVIFLVGLVSMILMRTLRK 34 (130)
Q Consensus 15 iivllLs~iv~~IL~R~l~~ 34 (130)
+++.+-++++..+++|++|.
T Consensus 100 Vl~g~s~l~i~yfvir~~R~ 119 (163)
T PF06679_consen 100 VLVGLSALAILYFVIRTFRL 119 (163)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444556777888899853
No 9
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=54.14 E-value=94 Score=23.53 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17180 6 HWFSIFNSFMMVIFLVGLVSMILMRTLRKD 35 (130)
Q Consensus 6 HW~SiiNS~iivllLs~iv~~IL~R~l~~D 35 (130)
.|.... .+.+...++.++..-+..+-||-
T Consensus 34 E~~Gt~-aL~ls~~l~~mig~yl~~~~rr~ 62 (137)
T PF12270_consen 34 EWVGTV-ALVLSGGLALMIGFYLRFTARRI 62 (137)
T ss_pred CcchHH-HHHHHHHHHHHHHHHHHHHHhhC
Confidence 444443 56667778888888888887763
No 10
>PF14093 DUF4271: Domain of unknown function (DUF4271)
Probab=54.10 E-value=72 Score=24.44 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q psy17180 116 IYYVYGFMLL 125 (130)
Q Consensus 116 ~~~~~~~~~~ 125 (130)
++..||..+.
T Consensus 84 ~~~~~~~i~~ 93 (208)
T PF14093_consen 84 QLIIFGIIFL 93 (208)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 11
>PF14851 FAM176: FAM176 family
Probab=53.72 E-value=8.6 Score=29.59 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17180 13 SFMMVIFLVGLVSMILMRTLRKDY 36 (130)
Q Consensus 13 S~iivllLs~iv~~IL~R~l~~D~ 36 (130)
++.+++.|+++|.-|..|. ++|.
T Consensus 31 C~GLlLtLcllV~risc~~-r~~~ 53 (153)
T PF14851_consen 31 CAGLLLTLCLLVIRISCRP-RKRC 53 (153)
T ss_pred HHHHHHHHHHHHhhheeec-cccc
Confidence 5567777777777776643 4444
No 12
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=45.74 E-value=90 Score=24.87 Aligned_cols=17 Identities=29% Similarity=0.124 Sum_probs=8.5
Q ss_pred hhhchhHHHHHHHHHHH
Q psy17180 77 ALIGTGYQITTVTLSVI 93 (130)
Q Consensus 77 ~lvG~GvQll~m~~~~l 93 (130)
+.+-.+++...+.++..
T Consensus 102 ~~i~~~i~~i~~~~~l~ 118 (248)
T PF11368_consen 102 ATIFFNISIIISFLSLF 118 (248)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44446666655444333
No 13
>PRK11246 hypothetical protein; Provisional
Probab=39.54 E-value=48 Score=27.01 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17180 11 FNSFMMVIFLVGLVSMILMRTLRKDYA 37 (130)
Q Consensus 11 iNS~iivllLs~iv~~IL~R~l~~D~~ 37 (130)
.|-.=+-+++++++.++|.|++-++..
T Consensus 162 ~~~~r~Mll~al~iG~lL~~~l~~~~~ 188 (218)
T PRK11246 162 TNILRLMLLLALAIGIVLTRTLLQGKR 188 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 466667788899999999999987743
No 14
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=38.27 E-value=1.2e+02 Score=20.22 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.0
Q ss_pred eeeeccccCCCCCchhhhh
Q psy17180 59 KQVHGDVFRPSPHPMLFSA 77 (130)
Q Consensus 59 Klih~DVFR~P~~~~LLs~ 77 (130)
|++....||--+||+-++.
T Consensus 41 ~Lvt~G~Y~~vRhPmY~g~ 59 (106)
T PF04191_consen 41 RLVTTGPYRYVRHPMYLGF 59 (106)
T ss_pred cccccCCccCcCChHHHHH
Confidence 5888889999889885543
No 15
>COG4115 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.12 E-value=9.8 Score=26.69 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=11.7
Q ss_pred cccceeeehhhhhHH
Q psy17180 102 YTEYFIFTSFWAYKI 116 (130)
Q Consensus 102 ~p~~~i~~~~~~~~~ 116 (130)
-|=.+-++|+||+||
T Consensus 46 EpLk~~~~g~wSRRI 60 (84)
T COG4115 46 EPLKGDYSGYWSRRI 60 (84)
T ss_pred ccCcccccchhhhhc
Confidence 344578999999997
No 16
>PF12133 Sars6: Open reading frame 6 from SARS coronavirus; InterPro: IPR022736 This entry represents small proteins, typically between 42 to 63 amino acids in length, which are uncharacterised.
Probab=36.60 E-value=60 Score=21.26 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhccCcc
Q psy17180 10 IFNSFMMVIFLVGLVSMILMRTLRK--DYARYSKDEE 44 (130)
Q Consensus 10 iiNS~iivllLs~iv~~IL~R~l~~--D~~~y~~~~~ 44 (130)
|+.|+-+++-=.-+....++|.+-+ |-+||++.|+
T Consensus 18 im~sf~~a~~~~~i~i~s~~~~l~~~l~k~~ys~ld~ 54 (62)
T PF12133_consen 18 IMRSFRIAIWNIQIIISSIVRQLFNPLDKKNYSELDD 54 (62)
T ss_pred HHHHHHHHHHhHHhHHHHHHHHHhcccccccccccCc
Confidence 3344444433222333345666643 4467877665
No 17
>PF12669 P12: Virus attachment protein p12 family
Probab=35.88 E-value=45 Score=21.36 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy17180 16 MVIFLVGLVSMILMRTLRKDYA 37 (130)
Q Consensus 16 ivllLs~iv~~IL~R~l~~D~~ 37 (130)
|.+++.++++.+++|.+.||.+
T Consensus 4 I~~Ii~~~~~~v~~r~~~k~~K 25 (58)
T PF12669_consen 4 IGIIILAAVAYVAIRKFIKDKK 25 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444555566666654
No 18
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=31.75 E-value=93 Score=22.96 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17180 10 IFNSFMMVIFLVGLVSMILMRTLRKDYARY 39 (130)
Q Consensus 10 iiNS~iivllLs~iv~~IL~R~l~~D~~~y 39 (130)
++|.+++.+++..+. .+.+++|+|+..-
T Consensus 8 ~~N~~~~~~~ly~~~--~~~~tI~~DI~~k 35 (135)
T PF10104_consen 8 FFNIILVSIFLYLVY--SFISTIRSDINHK 35 (135)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 346666555444443 3689999999754
No 19
>COG5500 Predicted integral membrane protein [Function unknown]
Probab=30.56 E-value=57 Score=25.00 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=25.3
Q ss_pred CchhhhhhhchhHHHHHHHHHHHHHHHhhcccccce
Q psy17180 71 HPMLFSALIGTGYQITTVTLSVILFAIVGDLYTEYF 106 (130)
Q Consensus 71 ~~~LLs~lvG~GvQll~m~~~~l~~a~lG~~~p~~~ 106 (130)
+|....++.|+|.-.+ +.++.+.+|.-.|+.|
T Consensus 55 nPlFmtAf~GTgllcl----iLl~~a~~gW~~pgsy 86 (159)
T COG5500 55 NPLFMTAFLGTGLLCL----ILLISALLGWHQPGSY 86 (159)
T ss_pred ChHHHHHHHhhhHHHH----HHHHHHHhccCCCCch
Confidence 6788999999997654 3566788999888754
No 20
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=28.67 E-value=50 Score=19.72 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy17180 15 MMVIFLVGLVSMILMRTLRKDYARYS 40 (130)
Q Consensus 15 iivllLs~iv~~IL~R~l~~D~~~y~ 40 (130)
+.+..++.+.+++..-.+.+|+.+..
T Consensus 7 ~~~s~~ai~~~l~~~p~i~~~i~~~~ 32 (53)
T PF01484_consen 7 IVVSTVAILSCLITVPSIYNDIQNFQ 32 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666677777776553
No 21
>KOG2131|consensus
Probab=27.89 E-value=22 Score=31.44 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=16.8
Q ss_pred ccCceeeeccccCCCCCchhh
Q psy17180 55 EYGWKQVHGDVFRPSPHPMLF 75 (130)
Q Consensus 55 ~~GWKlih~DVFR~P~~~~LL 75 (130)
...|--.|+||||+|+...-+
T Consensus 207 ~gSwtp~HaDVf~s~swS~ni 227 (427)
T KOG2131|consen 207 AGSWTPFHADVFHSPSWSVNI 227 (427)
T ss_pred CCCCCccchhhhcCCcceeee
Confidence 456999999999999875443
No 22
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=27.17 E-value=93 Score=28.59 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=31.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy17180 6 HWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYS 40 (130)
Q Consensus 6 HW~SiiNS~iivllLs~iv~~IL~R~l~~D~~~y~ 40 (130)
+|.++.-++++.++++.+.+.++.|.+||..-.-+
T Consensus 172 ~~~~l~~~~vl~lligl~ga~~la~~ikr~~~glE 206 (537)
T COG3290 172 FLRPLALIVVLGLLIGLLGAWILARHIKRQMLGLE 206 (537)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 67888999999999999999999999999976554
No 23
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=26.07 E-value=1e+02 Score=24.49 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhhcc
Q psy17180 28 LMRTLRKDYARYSK 41 (130)
Q Consensus 28 L~R~l~~D~~~y~~ 41 (130)
..+-.+|-.+++++
T Consensus 68 ~~~~~~k~~~~~~~ 81 (248)
T PF11368_consen 68 FIYKSRKYKKLYEE 81 (248)
T ss_pred HHHHHHHHHHHhcc
Confidence 34444444445554
No 24
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=25.36 E-value=1e+02 Score=21.42 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17180 13 SFMMVIFLVGLVSMILM 29 (130)
Q Consensus 13 S~iivllLs~iv~~IL~ 29 (130)
.+++++.++.+|..+..
T Consensus 11 aliv~~iiaIvvW~iv~ 27 (81)
T PF00558_consen 11 ALIVALIIAIVVWTIVY 27 (81)
T ss_dssp HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444555554443
No 25
>PLN00010 cyclin-dependent kinases regulatory subunit; Provisional
Probab=22.53 E-value=42 Score=23.65 Aligned_cols=23 Identities=48% Similarity=0.983 Sum_probs=17.7
Q ss_pred hcccccCceeeeccccCCCCCchhh
Q psy17180 51 DLGDEYGWKQVHGDVFRPSPHPMLF 75 (130)
Q Consensus 51 ~~~e~~GWKlih~DVFR~P~~~~LL 75 (130)
+.+-..|| +|.++++|-++-+||
T Consensus 45 GIqqS~GW--~Hy~~h~pEphILlF 67 (86)
T PLN00010 45 GVQQSRGW--VHYAIHRPEPHIMLF 67 (86)
T ss_pred ccccCCCc--EEeeecCCCceEEEE
Confidence 45567899 799998887776665
No 26
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=22.37 E-value=1.4e+02 Score=22.29 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccc-------c-hhhhhcccccCceeeeccccCCCC--Cchhhh
Q psy17180 7 WFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKDEEV-------D-DMERDLGDEYGWKQVHGDVFRPSP--HPMLFS 76 (130)
Q Consensus 7 W~SiiNS~iivllLs~iv~~IL~R~l~~D~~~y~~~~~~-------~-~~e~~~~e~~GWKlih~DVFR~P~--~~~LLs 76 (130)
|.++....++++++..+....+.|. ++|..+-++.--. . -.-.-...-.+| .....+=.|- -+++.+
T Consensus 1 w~~~~g~~ll~~l~~~~~~~~~~~~-~~~~~~~~~~l~l~~~l~~l~l~l~~~~~~~~~~--~~~~~~~~P~a~~~~l~~ 77 (194)
T PF07698_consen 1 WLSFIGLFLLVLLLLLILYLYLRRF-RPRILRSNKYLLLLSLLLLLSLLLAKIILFFISD--ISYFPYLIPVAAAAMLLT 77 (194)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-CcHhhhchhHHHHHHHHHHHHHHHHHHHHHhccc--chhhhhhhHHHHHHHHHH
Confidence 7777877777777777766666665 6665433211000 0 000000000010 1122233332 467788
Q ss_pred hhhchhHHHHHHHHHHHHHHHh
Q psy17180 77 ALIGTGYQITTVTLSVILFAIV 98 (130)
Q Consensus 77 ~lvG~GvQll~m~~~~l~~a~l 98 (130)
.+.|.-.=+...+..+++.+..
T Consensus 78 ~l~~~~~ai~~~~~~sl~~~~~ 99 (194)
T PF07698_consen 78 ILIDPRLAILASLFLSLLASLL 99 (194)
T ss_pred HHhcchHHHHHHHHHHHHHHHH
Confidence 8888766666655555555544
No 27
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=21.90 E-value=1.7e+02 Score=19.96 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=21.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17180 6 HWFSIFNSFMMVIFLVGLVSMILMRTLRKDYA 37 (130)
Q Consensus 6 HW~SiiNS~iivllLs~iv~~IL~R~l~~D~~ 37 (130)
+|+ ..|.+....+..+++.+++|.+-||+.
T Consensus 44 lWF--~~SCi~~~il~~~l~~~~vk~~Fkd~~ 73 (80)
T PF06196_consen 44 LWF--FYSCIGGPILFIILVWLMVKFFFKDIP 73 (80)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 454 346676777777777888888888863
No 28
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=21.32 E-value=1.8e+02 Score=20.17 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy17180 12 NSFMMVIFLVGLVSMILMRTLRK 34 (130)
Q Consensus 12 NS~iivllLs~iv~~IL~R~l~~ 34 (130)
+.+++++++..++..++.|.+++
T Consensus 17 ~~~~~~l~~~~~~l~ll~~ll~~ 39 (108)
T PF07219_consen 17 WVALILLLLLFVVLYLLLRLLRR 39 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666654
Done!