Query psy17180
Match_columns 130
No_of_seqs 110 out of 480
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 23:56:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 74.2 1.1 3.9E-05 29.6 1.2 37 4-40 7-45 (79)
2 2jln_A MHP1; hydantoin, transp 39.3 21 0.00072 30.0 3.2 31 13-43 429-459 (501)
3 2knc_A Integrin alpha-IIB; tra 33.3 85 0.0029 19.2 4.6 27 5-31 10-36 (54)
4 3soy_A NTF2-like superfamily p 25.6 23 0.00079 24.4 1.1 18 54-71 122-139 (145)
5 2l8s_A Integrin alpha-1; trans 23.2 1.4E+02 0.0047 18.3 4.8 28 4-31 6-33 (54)
6 3b9w_A Ammonium transporter fa 18.2 1.3E+02 0.0045 25.2 4.4 22 13-34 325-346 (407)
7 2k9j_B Integrin beta-3; transm 17.9 1.6E+02 0.0054 16.9 5.0 29 4-32 6-34 (43)
8 4gmj_A CCR4-NOT transcription 17.2 41 0.0014 26.3 1.0 15 62-77 160-174 (229)
9 3bbo_Z Ribosomal protein L29; 17.2 56 0.0019 24.7 1.7 41 28-71 106-153 (173)
10 4b89_A General negative regula 16.1 44 0.0015 26.5 0.9 15 62-77 183-197 (249)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=74.23 E-value=1.1 Score=29.65 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=21.7
Q ss_pred eehhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhc
Q psy17180 4 KIHWFSIFNSFMMVIFLVGLVSMILMRTL--RKDYARYS 40 (130)
Q Consensus 4 ~iHW~SiiNS~iivllLs~iv~~IL~R~l--~~D~~~y~ 40 (130)
..+...++-.++..++|.+++.+.+.|.+ -+|-+.|.
T Consensus 7 ~~n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~ 45 (79)
T 2knc_B 7 GPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFA 45 (79)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666667777666666644 24444443
No 2
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=39.31 E-value=21 Score=29.97 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q psy17180 13 SFMMVIFLVGLVSMILMRTLRKDYARYSKDE 43 (130)
Q Consensus 13 S~iivllLs~iv~~IL~R~l~~D~~~y~~~~ 43 (130)
+..+.+.+++++..++.|..++...+|.+.+
T Consensus 429 ~~~~g~~va~v~Y~~l~~~~~~~~~~~~~~~ 459 (501)
T 2jln_A 429 MFVTGLIAALLLHIPAMRWVAKTFPLFSEAE 459 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCchhhhhccccc
Confidence 3455566777888888777665567776544
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.34 E-value=85 Score=19.25 Aligned_cols=27 Identities=7% Similarity=0.253 Sum_probs=14.1
Q ss_pred ehhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy17180 5 IHWFSIFNSFMMVIFLVGLVSMILMRT 31 (130)
Q Consensus 5 iHW~SiiNS~iivllLs~iv~~IL~R~ 31 (130)
+-|--++-|++.-+++-+++..+|.|.
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444555555555555555555544
No 4
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=25.56 E-value=23 Score=24.44 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=13.4
Q ss_pred cccCceeeeccccCCCCC
Q psy17180 54 DEYGWKQVHGDVFRPSPH 71 (130)
Q Consensus 54 e~~GWKlih~DVFR~P~~ 71 (130)
++.|||.+|.-.-.||..
T Consensus 122 ~~ggWkIvh~H~S~~~~~ 139 (145)
T 3soy_A 122 PNTGWRIVHVHYSGPAKT 139 (145)
T ss_dssp TTTEEEEEEEEEECCCCC
T ss_pred CCCCEEEEEEecCCCCCC
Confidence 358999999887666643
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=23.20 E-value=1.4e+02 Score=18.35 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=15.7
Q ss_pred eehhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy17180 4 KIHWFSIFNSFMMVIFLVGLVSMILMRT 31 (130)
Q Consensus 4 ~iHW~SiiNS~iivllLs~iv~~IL~R~ 31 (130)
++-|--++-|++.-+++-+++..+|.|.
T Consensus 6 ~vp~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445556665555555566666654
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=18.22 E-value=1.3e+02 Score=25.18 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17180 13 SFMMVIFLVGLVSMILMRTLRK 34 (130)
Q Consensus 13 S~iivllLs~iv~~IL~R~l~~ 34 (130)
.+++++..++++..++...+|+
T Consensus 325 g~~~~~~~s~v~~~i~~~il~~ 346 (407)
T 3b9w_A 325 GIGITLALALIGGVIAGALIKL 346 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3445566777788888888877
No 7
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=17.87 E-value=1.6e+02 Score=16.92 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=18.8
Q ss_pred eehhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17180 4 KIHWFSIFNSFMMVIFLVGLVSMILMRTL 32 (130)
Q Consensus 4 ~iHW~SiiNS~iivllLs~iv~~IL~R~l 32 (130)
..+...++-..+..+++.+++...+.|.+
T Consensus 6 ~~n~~~Iv~gvi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 6 GPDILVVLLSVMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666777666666665
No 8
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=17.18 E-value=41 Score=26.28 Aligned_cols=15 Identities=33% Similarity=0.658 Sum_probs=10.7
Q ss_pred eccccCCCCCchhhhh
Q psy17180 62 HGDVFRPSPHPMLFSA 77 (130)
Q Consensus 62 h~DVFR~P~~~~LLs~ 77 (130)
...||||| +|++.++
T Consensus 160 ~S~iFkPP-NPW~~~I 174 (229)
T 4gmj_A 160 RSVVFRPP-NPWTMAI 174 (229)
T ss_dssp TCTTTSTT-CHHHHHH
T ss_pred cCCcCCCC-ChhHHHH
Confidence 35689976 8887644
No 9
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=17.17 E-value=56 Score=24.66 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhc----cCccc---chhhhhcccccCceeeeccccCCCCC
Q psy17180 28 LMRTLRKDYARYS----KDEEV---DDMERDLGDEYGWKQVHGDVFRPSPH 71 (130)
Q Consensus 28 L~R~l~~D~~~y~----~~~~~---~~~e~~~~e~~GWKlih~DVFR~P~~ 71 (130)
-+|.+||||+|-. +.+.. +.-+.. .-+.-||. .-|-|||+-
T Consensus 106 rIR~VRRdIARIkTVLrErel~~~~~kr~SR-k~~~~~k~--s~~~~ppp~ 153 (173)
T 3bbo_Z 106 DFRRMKKQVARMLTVKREREIKEGIKKRLSR-KLDRQWKK--SIVPRPPPS 153 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHH-HHHHHhhh--cccccCCCc
Confidence 3689999999962 11110 000111 13457984 557888863
No 10
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=16.09 E-value=44 Score=26.55 Aligned_cols=15 Identities=20% Similarity=0.629 Sum_probs=11.3
Q ss_pred eccccCCCCCchhhhh
Q psy17180 62 HGDVFRPSPHPMLFSA 77 (130)
Q Consensus 62 h~DVFR~P~~~~LLs~ 77 (130)
+..||||| ||++.++
T Consensus 183 ~SkiFkPP-NPWt~~I 197 (249)
T 4b89_A 183 ESKIFKPP-NPWTVGI 197 (249)
T ss_dssp TCSSSSTT-CHHHHHH
T ss_pred cCCccCCC-CchHHHH
Confidence 35789999 8887544
Done!