Query psy17180
Match_columns 130
No_of_seqs 110 out of 480
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 23:56:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17180.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17180hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gy7a_ d.17.4.2 (A:) Nuclear 31.7 4.6 0.00034 26.0 0.0 14 54-68 105-118 (121)
2 d1zo2a1 d.17.4.2 (A:10-126) Nu 24.8 10 0.00073 24.0 0.7 13 54-67 103-115 (117)
3 d2oara1 f.16.1.1 (A:10-118) Ga 23.4 50 0.0037 21.1 4.2 31 4-34 57-87 (109)
4 d3cnxa1 d.17.4.17 (A:5-157) Un 23.3 14 0.00099 23.9 1.2 10 54-63 137-146 (153)
5 d1cksa_ d.97.1.1 (A:) CksHs2 { 22.6 16 0.0011 22.5 1.3 23 51-75 46-68 (74)
6 d2f86b1 d.17.4.7 (B:343-471) A 20.8 12 0.00086 22.3 0.4 10 54-63 116-125 (129)
7 d2ux0a1 d.17.4.7 (A:387-521) A 20.3 12 0.00088 22.5 0.4 10 54-63 121-130 (135)
8 d1puca_ d.97.1.1 (A:) suc1 {Fi 19.5 19 0.0014 23.3 1.3 23 51-75 74-96 (101)
9 d2r4ia1 d.17.4.15 (A:1-122) Un 15.5 18 0.0013 21.5 0.4 10 54-63 107-116 (122)
10 d2owpa1 d.17.4.18 (A:1-128) Hy 15.3 25 0.0018 21.6 1.1 12 54-65 111-122 (128)
No 1
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.70 E-value=4.6 Score=26.04 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=11.5
Q ss_pred cccCceeeeccccCC
Q psy17180 54 DEYGWKQVHGDVFRP 68 (130)
Q Consensus 54 e~~GWKlih~DVFR~ 68 (130)
++.+|+ |++|+||-
T Consensus 105 ~~~~y~-I~nD~FRl 118 (121)
T d1gy7a_ 105 DGNSYY-VFNDIFRL 118 (121)
T ss_dssp ETTEEE-EEEEEEEE
T ss_pred eCCEEE-EEEEEEEE
Confidence 467898 89999993
No 2
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]}
Probab=24.85 E-value=10 Score=24.04 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=10.4
Q ss_pred cccCceeeeccccC
Q psy17180 54 DEYGWKQVHGDVFR 67 (130)
Q Consensus 54 e~~GWKlih~DVFR 67 (130)
.+.+|+ |++|+||
T Consensus 103 ~~~~~~-I~nD~FR 115 (117)
T d1zo2a1 103 GNGGFM-IFNDLFR 115 (117)
T ss_dssp SSSCEE-EEEEEEE
T ss_pred CCCCEE-EEeEEee
Confidence 455796 8999999
No 3
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.40 E-value=50 Score=21.08 Aligned_cols=31 Identities=6% Similarity=0.128 Sum_probs=19.2
Q ss_pred eehhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17180 4 KIHWFSIFNSFMMVIFLVGLVSMILMRTLRK 34 (130)
Q Consensus 4 ~iHW~SiiNS~iivllLs~iv~~IL~R~l~~ 34 (130)
.++|=+++|+++--+.+++++..++.+..+|
T Consensus 57 ~i~~G~fi~a~InFlIiA~vv~F~vvk~~n~ 87 (109)
T d2oara1 57 TIDLNVLLSAAINFFLIAFAVYFLVVLPYNT 87 (109)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778877665554555565555666554
No 4
>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]}
Probab=23.32 E-value=14 Score=23.85 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=8.1
Q ss_pred cccCceeeec
Q psy17180 54 DEYGWKQVHG 63 (130)
Q Consensus 54 e~~GWKlih~ 63 (130)
++.|||.+|-
T Consensus 137 ~dg~Wkivh~ 146 (153)
T d3cnxa1 137 TPDGWKLWSH 146 (153)
T ss_dssp CTTCCEEEEE
T ss_pred ECCEEEEEEE
Confidence 4679999985
No 5
>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.65 E-value=16 Score=22.53 Aligned_cols=23 Identities=39% Similarity=0.886 Sum_probs=18.4
Q ss_pred hcccccCceeeeccccCCCCCchhh
Q psy17180 51 DLGDEYGWKQVHGDVFRPSPHPMLF 75 (130)
Q Consensus 51 ~~~e~~GWKlih~DVFR~P~~~~LL 75 (130)
+.+-..|| +|-.+++|-++-++|
T Consensus 46 GIqqS~GW--~Hym~h~pEphiLlf 68 (74)
T d1cksa_ 46 GVQQSLGW--VHYMIHEPEPHILLF 68 (74)
T ss_dssp TCCCCTTC--CCCBCCCCCCCCCCC
T ss_pred CcccCCCc--EEeeeeCCCceEEEE
Confidence 56678999 699999998876654
No 6
>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]}
Probab=20.76 E-value=12 Score=22.26 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=7.9
Q ss_pred cccCceeeec
Q psy17180 54 DEYGWKQVHG 63 (130)
Q Consensus 54 e~~GWKlih~ 63 (130)
.+.+||.+|.
T Consensus 116 ~~g~Wkivh~ 125 (129)
T d2f86b1 116 KQGRWVCVHV 125 (129)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 4678999985
No 7
>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.32 E-value=12 Score=22.53 Aligned_cols=10 Identities=30% Similarity=0.518 Sum_probs=8.0
Q ss_pred cccCceeeec
Q psy17180 54 DEYGWKQVHG 63 (130)
Q Consensus 54 e~~GWKlih~ 63 (130)
++.+||.+|.
T Consensus 121 ~~g~Wkivh~ 130 (135)
T d2ux0a1 121 RDGKWLNVHY 130 (135)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 5679999984
No 8
>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=19.52 E-value=19 Score=23.32 Aligned_cols=23 Identities=35% Similarity=0.769 Sum_probs=18.4
Q ss_pred hcccccCceeeeccccCCCCCchhh
Q psy17180 51 DLGDEYGWKQVHGDVFRPSPHPMLF 75 (130)
Q Consensus 51 ~~~e~~GWKlih~DVFR~P~~~~LL 75 (130)
+.+-..|| +|-.+++|-++-++|
T Consensus 74 GIqqS~GW--~Hymih~pEPhiLLF 96 (101)
T d1puca_ 74 GITQSLGW--EMYEVHVPEPHILLF 96 (101)
T ss_dssp TCCCCSSC--CCCCCCCCCTTCCCC
T ss_pred ccccCCCc--EeeeeeCCCceEEEE
Confidence 45678999 699999998887664
No 9
>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}
Probab=15.51 E-value=18 Score=21.53 Aligned_cols=10 Identities=30% Similarity=0.647 Sum_probs=8.1
Q ss_pred cccCceeeec
Q psy17180 54 DEYGWKQVHG 63 (130)
Q Consensus 54 e~~GWKlih~ 63 (130)
.+.|||.+|.
T Consensus 107 ~~g~Wkiv~~ 116 (122)
T d2r4ia1 107 FDGNWKVIAG 116 (122)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 5789999875
No 10
>d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374 {Burkholderia xenovorans [TaxId: 36873]}
Probab=15.32 E-value=25 Score=21.61 Aligned_cols=12 Identities=42% Similarity=0.709 Sum_probs=8.8
Q ss_pred cccCceeeeccc
Q psy17180 54 DEYGWKQVHGDV 65 (130)
Q Consensus 54 e~~GWKlih~DV 65 (130)
.+.|||.+|.-+
T Consensus 111 ~~~gWrIv~~H~ 122 (128)
T d2owpa1 111 PADGWKIVAAHV 122 (128)
T ss_dssp TTTCEEEEEEEE
T ss_pred CCCCEEEEEEee
Confidence 367899998643
Done!