RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17180
(130 letters)
>gnl|CDD|217309 pfam02990, EMP70, Endomembrane protein 70.
Length = 518
Score = 136 bits (345), Expect = 5e-39
Identities = 54/101 (53%), Positives = 73/101 (72%), Gaps = 4/101 (3%)
Query: 4 KIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKDEEVDDMERDLGDEYGWKQVHG 63
+IHWFSI NS ++V+FL G+VSMILMRTLR+D ARY++ +E + D +E GWK VHG
Sbjct: 194 QIHWFSIINSLVIVLFLSGIVSMILMRTLRRDIARYNELDEDE----DAQEESGWKLVHG 249
Query: 64 DVFRPSPHPMLFSALIGTGYQITTVTLSVILFAIVGDLYTE 104
DVFRP +PML SAL+G+G Q+ + + I+FA +G L
Sbjct: 250 DVFRPPRNPMLLSALVGSGVQLLLMVIGTIVFACLGFLSPS 290
Score = 51.9 bits (125), Expect = 7e-09
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 105 YFIFTSFWAYKIYYVYGFMLLVFLIL 130
+FIFTS W +KIYY++GF+ LVF+IL
Sbjct: 437 FFIFTSLWLHKIYYMFGFLFLVFIIL 462
>gnl|CDD|217447 pfam03239, FTR1, Iron permease FTR1 family.
Length = 284
Score = 31.2 bits (71), Expect = 0.12
Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Query: 7 WFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKDEEVDDMERDLGDEYGWKQVHGDVF 66
F I SF+++ GL + L K A D L D +H
Sbjct: 185 SFFILTSFLLLFVAAGLFAYGTHELLEKAEACNGLDYIEFGKSASLLDGSLIGLLHHAFL 244
Query: 67 RPSPHPMLFSALIGTGYQITTVTLSVILF 95
+ AL+ GY T L V +
Sbjct: 245 AVQREGEILLALL--GYFNTAYWLRVAIQ 271
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes
the Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 30.0 bits (68), Expect = 0.12
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 33 RKDYARYSKDEEVDDMERDLGD 54
RK YA D++ DDME D
Sbjct: 49 RKRYAYRDDDDDDDDMEAGGAD 70
>gnl|CDD|215027 PLN00010, PLN00010, cyclin-dependent kinases regulatory subunit;
Provisional.
Length = 86
Score = 28.8 bits (64), Expect = 0.28
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 57 GWKQVHGDVFRPSPHPMLFSALIGTGYQ 84
GW VH + RP PH MLF + Q
Sbjct: 51 GW--VHYAIHRPEPHIMLFRRPLNYQQQ 76
>gnl|CDD|235295 PRK04405, prsA, peptidylprolyl isomerase; Provisional.
Length = 298
Score = 29.4 bits (66), Expect = 0.46
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 23 LVSMILMRTLRKDYARYSKDEEVDDMERDLGDEYG 57
L +MI+ R L K Y + ++VD +YG
Sbjct: 58 LANMIIYRALEKQYGKKVSTKKVDKQYNSYKKQYG 92
>gnl|CDD|234400 TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa. This
model represents the N-terminal domain or EccCa subunit
of the type VII secretion protein EccC as found in the
Actinobacteria. Type VII secretion is defined more
broadly as including secretion systems for ESAT-6-like
proteins in the Firmicutes as well as in the
Actinobacteria, but this family does not show close
homologs in the Firmicutes [Protein fate, Protein and
peptide secretion and trafficking].
Length = 661
Score = 28.8 bits (65), Expect = 0.83
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 26/88 (29%)
Query: 11 FNSFMMVIFLVGLVSMILM---------------RTLRKDYARY--SKDEEVDDMERDLG 53
N ++ L+ LVSM+ M R+DY RY EV +
Sbjct: 31 RNPMFLIFPLMMLVSMLGMLAGGRGGAGKSTPELDEDRRDYLRYLDQLRREVRETAAAQR 90
Query: 54 DEYGWKQVHGDVFRPSPHPMLFSALIGT 81
W H P P AL+GT
Sbjct: 91 AALLW--RH-------PDPDTLWALVGT 109
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which
are homologues of floricaula (FLO) and Leafy (LFY)
proteins which are floral meristem identity proteins.
Mutations in the sequences of these proteins affect
flower and leaf development.
Length = 382
Score = 28.4 bits (64), Expect = 1.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 41 KDEEVDDMERDLGDEYGW 58
KDEE+DDM L + W
Sbjct: 80 KDEELDDMMNSLSHIFRW 97
>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182). This
family contains uncharacterized integral membrane
proteins.
Length = 771
Score = 27.9 bits (63), Expect = 1.8
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 84 QITTVTLSVILFAIVG----DLYTEYFIFTSF-----WAYKIYYVYGFMLLVFLIL 130
++ + V+L ++ DLYT++ F + ++ G LLVFLI
Sbjct: 4 KVLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIF 59
>gnl|CDD|185632 PTZ00453, PTZ00453, cyclin-dependent kinase; Provisional.
Length = 96
Score = 26.1 bits (57), Expect = 3.1
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 32 LRKDYARYSKDEEV-DDME-RDLGDEYGWKQVHGDVFRPSPHPMLF 75
L KD+AR + + E R LG + H + +P PH +LF
Sbjct: 46 LPKDFARLVPRSRLMSESEWRQLGVQQSVGWRHYMIHKPEPHVLLF 91
>gnl|CDD|238705 cd01417, Ribosomal_L19e_E, Ribosomal protein L19e, eukaryotic.
L19e is found in the large ribosomal subunit of
eukaryotes and archaea. L19e is distinct from the
ribosomal subunit L19, which is found in prokaryotes. It
consists of two small globular domains connected by an
extended segment. It is located toward the surface of
the large subunit, with one exposed end involved in
forming the intersubunit bridge with the small subunit.
The other exposed end is involved in forming the
translocon binding site, along with L22, L23, L24, L29,
and L31e subunits.
Length = 164
Score = 26.5 bits (59), Expect = 3.2
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 26 MILMRTLRKDYARYSKDEEVD-DMERDLGDEYGWKQVHGDVFR 67
M R LR+ +Y + +++D + +L + + G+VF+
Sbjct: 93 MRRQRVLRRLLKKYRESKKIDKHLYHEL-----YLKAKGNVFK 130
>gnl|CDD|118672 pfam10144, SMP_2, Bacterial virulence factor haemolysin. Members
of this family of bacterial proteins are membrane
proteins that effect the expression of haemolysin under
anaerobic conditions.
Length = 210
Score = 26.7 bits (59), Expect = 3.5
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 11 FNSFMMVIFLVGLVSMILMRTLRKDYAR 38
N +++ + + M+L RTL + R
Sbjct: 162 TNQLRLMLLIALAIGMLLARTLLQ-KRR 188
>gnl|CDD|234359 TIGR03802, Asp_Ala_antiprt, aspartate-alanine antiporter. All
members of the seed alignment for this model are
asparate-alanine anti-transporters (AspT) encoded next
to the gene for aspartate 4-decarboxylase (AspD), which
converts asparate to alanine, releasing CO2. The
exchange of Asp for Ala is electrogenic, so the
AspD/AspT system confers a proton-motive force. This
transporter contains two copies of the AspT/YidE/YbjL
antiporter duplication domain (TIGR01625).
Length = 562
Score = 26.1 bits (58), Expect = 6.5
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 10 IFNSFMMVIFLVGLVSMILMRTLRKDYARYSKDEEVDDMERDLGD 54
IF + ++I LV ++ ++ LR+ + + E+ LG
Sbjct: 166 IFGTIGVIIVLVNILPWLMGIDLREAAKKL--EAELHGGNDVLGV 208
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 26.0 bits (57), Expect = 7.6
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 85 ITTVTLSVILFAIVGDLYTE----YFIFTSFWAYKIYYVYGFM 123
I T ++I++A+V +T +F F SF+++ + YG M
Sbjct: 1305 IQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMM 1347
>gnl|CDD|222949 PHA02947, PHA02947, S-S bond formation pathway protein;
Provisional.
Length = 215
Score = 25.8 bits (57), Expect = 7.9
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 6 HWFSIFNSFMMVIFLVGLVSM 26
WF + +++IF++ + S+
Sbjct: 179 PWFIVGVVIILIIFVIAICSI 199
>gnl|CDD|233742 TIGR02135, phoU_full, phosphate transport system regulatory
protein PhoU. This model describes PhoU, a regulatory
protein of unknown mechanism for high-affinity
phosphate ABC transporter systems. The protein consists
of two copies of the domain described by pfam01895.
Deletion of PhoU activates constitutive expression of
the phosphate ABC transporter and allows phosphate
transport, but causes a growth defect and so likely has
some second function [Regulatory functions, Other,
Transport and binding proteins, Anions].
Length = 212
Score = 25.7 bits (57), Expect = 8.2
Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 17 VIFLVGLVSMILMRTLR------KDYAR--YSKDEEVDDMERDLGDEYGW 58
++ + GLV L +R ++ AR D++++ +E + ++
Sbjct: 14 LLEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINALEVKIEEKCLR 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.333 0.147 0.464
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,091,816
Number of extensions: 655429
Number of successful extensions: 1623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1612
Number of HSP's successfully gapped: 137
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (24.3 bits)