RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17180
         (130 letters)



>1h6w_A Bacteriophage T4 short tail fibre; structural protein, gene product
           12, adhesin, fibrous protein; 1.9A {Bacteriophage T4}
           SCOP: b.108.1.1 d.231.1.1
          Length = 312

 Score = 30.9 bits (68), Expect = 0.086
 Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 57  GWKQVHGDVFRPSPHPMLFSALIGTGY 83
            W+  HG     S  P+  S  IGT Y
Sbjct: 274 AWRFCHGGTVSASDCPLYASR-IGTRY 299


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 2.5
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 36   YARYSKDEEV-DDMERDLGDEYGWKQVHGDVFRPSPHPM--LFSALIGTGYQITTVTLSV 92
            Y      ++V +  +    D YG+  +  D+   +P  +   F    G   +      S 
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSIL--DIVINNPVNLTIHFG---GEKGKRIRENYSA 1690

Query: 93   ILFAIVGD 100
            ++F  + D
Sbjct: 1691 MIFETIVD 1698



 Score = 26.6 bits (58), Expect = 3.4
 Identities = 5/14 (35%), Positives = 10/14 (71%)

Query: 47  DMERDLGDEYGWKQ 60
            ++ +  D+YG+KQ
Sbjct: 532 TLDINPDDDYGFKQ 545


>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
           eukaryotic initiation factor 60S, translation, large
           ribosomal subunit; 3.52A {Tetrahymena thermophila}
          Length = 185

 Score = 25.8 bits (56), Expect = 4.0
 Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 6/49 (12%)

Query: 26  MILMRTLRKDYARYSKDEEVDDME-RDLGDEYGWKQVHGDVFRPSPHPM 73
           M   R LR+   +Y   +++D  +  +    Y      G++++     +
Sbjct: 96  MRRQRVLRRLLRKYRAAKKIDKHQYHEF---Y--LGSKGNLYKNKTVLI 139


>2cov_D Beta-1,3-xylanase; carbohydrate-binding module, family 31 CBM,
          beta-1,3-xylanas binding protein; 1.25A {Alcaligenes
          SP}
          Length = 104

 Score = 25.2 bits (54), Expect = 5.6
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 16/60 (26%)

Query: 38 RYSKDEEVDDMERDLGDEYGWKQV-----------HGDVFRPSPHPMLFSALIGTGYQIT 86
           Y  D+E++    D G   GW  V               FR +     F+A++G  Y++T
Sbjct: 16 NYVSDQEIEVYHVDKGWSAGWNYVCLNDYCLPGNKSNGAFRKT-----FNAVLGQDYKLT 70


>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins,
           structural genomics, J center for structural genomics,
           JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
          Length = 454

 Score = 25.1 bits (55), Expect = 9.1
 Identities = 6/43 (13%), Positives = 14/43 (32%)

Query: 80  GTGYQITTVTLSVILFAIVGDLYTEYFIFTSFWAYKIYYVYGF 122
           G      T   +  + A  GD+         +    ++++Y  
Sbjct: 273 GYQKGFVTQKYAEQMLADPGDVRGHLLEENKYAGKTVWWLYKL 315


>2xut_A Proton/peptide symporter family protein; transport protein,
           membrane protein, major facilitator super transporter;
           3.62A {Shewanella oneidensis}
          Length = 524

 Score = 25.0 bits (55), Expect = 9.4
 Identities = 2/28 (7%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 7   WFSIFNSFMMVIFLVGLVSMILMRTLRK 34
                N  ++++  +   + +L   + +
Sbjct: 339 MMQALNPLLVMLL-IPFNNFVLYPAIER 365


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.333    0.147    0.464 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,104,739
Number of extensions: 115562
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 19
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 52 (23.9 bits)