RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17180
         (130 letters)



>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces
          pombe) [TaxId: 4896]}
          Length = 101

 Score = 24.8 bits (54), Expect = 2.5
 Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 2/19 (10%)

Query: 57 GWKQVHGDVFRPSPHPMLF 75
          GW     +V  P PH +LF
Sbjct: 80 GW--EMYEVHVPEPHILLF 96


>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 113

 Score = 24.8 bits (54), Expect = 2.7
 Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 2/19 (10%)

Query: 57 GWKQVHGDVFRPSPHPMLF 75
          GW   H +   P PH +LF
Sbjct: 79 GW--EHYECHAPEPHILLF 95


>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 143

 Score = 24.3 bits (53), Expect = 3.7
 Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 26  MILMRTLRKDYARYSKDEEVD-DMERDLGDEYGWKQVHGDVFR 67
              +R  R        +  +     RDL     + +  G  F 
Sbjct: 95  ESRIRAQRTKLRELRDEGTLSSSQYRDL-----YDKAGGGEFD 132


>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 74

 Score = 23.1 bits (50), Expect = 6.6
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 2/19 (10%)

Query: 57 GWKQVHGDVFRPSPHPMLF 75
          GW  VH  +  P PH +LF
Sbjct: 52 GW--VHYMIHEPEPHILLF 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.147    0.464 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 524,307
Number of extensions: 23115
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 12
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 48 (22.6 bits)