BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17181
(75 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HD45|TM9S3_HUMAN Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1
SV=2
Length = 589
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 43/50 (86%)
Query: 26 QLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
+ +MYGLFQT+FYFGYMA+FS LGIMCG +GY+GTS FVRKIY VKID
Sbjct: 540 KTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589
>sp|Q9ET30|TM9S3_MOUSE Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1
SV=1
Length = 587
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 43/50 (86%)
Query: 26 QLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
+ +MYGLFQT+FYFGYMA+FS LGIMCG +GY+GTS FVRKIY VKID
Sbjct: 538 KTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587
>sp|Q5RDY2|TM9S4_PONAB Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2
SV=1
Length = 642
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 15 SVFNFVTVRPQQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKI 74
++F FV +L + + YFGY AL L ++ GT+G+ +FVRKIYA VKI
Sbjct: 586 AIFYFVN----KLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKI 641
Query: 75 D 75
D
Sbjct: 642 D 642
>sp|Q92544|TM9S4_HUMAN Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1
SV=2
Length = 642
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 15 SVFNFVTVRPQQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKI 74
++F FV +L + + YFGY AL L ++ GT+G+ +FVRKIYA VKI
Sbjct: 586 AIFYFVN----KLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKI 641
Query: 75 D 75
D
Sbjct: 642 D 642
>sp|A5D7E2|TM9S4_BOVIN Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2
SV=2
Length = 642
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 15 SVFNFVTVRPQQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKI 74
++F FV +L + + YFGY AL L ++ GT+G+ +FVRKIYA VKI
Sbjct: 586 AIFYFVN----KLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKI 641
Query: 75 D 75
D
Sbjct: 642 D 642
>sp|Q8BH24|TM9S4_MOUSE Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2
SV=1
Length = 643
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 15 SVFNFVTVRPQQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKI 74
++F FV +L + + YFGY L L ++ GT+G+ +FVRKIYA VKI
Sbjct: 587 AIFYFVN----KLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKI 642
Query: 75 D 75
D
Sbjct: 643 D 643
>sp|Q4KLL4|TM9S4_RAT Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4
PE=2 SV=1
Length = 643
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 15 SVFNFVTVRPQQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKI 74
++F FV +L + + YFGY L L ++ GT+G+ +FVRKIYA VKI
Sbjct: 587 AIFYFVN----KLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKI 642
Query: 75 D 75
D
Sbjct: 643 D 643
>sp|Q9Y819|YON8_SCHPO Transmembrane 9 superfamily protein C1105.08 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC1105.08 PE=3 SV=1
Length = 629
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 26 QLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
++ L YFGY L S+ + +CG+VG+ G LFV KIYA++KID
Sbjct: 580 KISSSSLATAVLYFGYSLLISVLVFFLCGSVGFFGAFLFVNKIYASIKID 629
>sp|Q54ZW0|PHG1B_DICDI Putative phagocytic receptor 1b OS=Dictyostelium discoideum
GN=phg1b PE=2 SV=1
Length = 587
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 31 GLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
GL Q TFYF YM + I+ GTVG+ + +FV++IY +K D
Sbjct: 543 GLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYRNLKSD 587
>sp|Q66HG5|TM9S2_RAT Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2
PE=2 SV=1
Length = 663
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 26 QLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
+LQ+ G T YFGY + L + GT+G+ FV KIY+ VK+D
Sbjct: 614 KLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>sp|Q5R8Y6|TM9S2_PONAB Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2
SV=1
Length = 663
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 26 QLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
+LQ+ G T YFGY + L + GT+G+ FV KIY+ VK+D
Sbjct: 614 KLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>sp|Q99805|TM9S2_HUMAN Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1
SV=1
Length = 663
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 26 QLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
+LQ+ G T YFGY + L + GT+G+ FV KIY+ VK+D
Sbjct: 614 KLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>sp|P58021|TM9S2_MOUSE Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2
SV=1
Length = 662
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 26 QLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
+LQ+ G T YFGY + L + GT+G+ FV KIY+ VK+D
Sbjct: 613 KLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
>sp|P32802|TMN1_YEAST Transmembrane 9 superfamily member 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=EMP70 PE=1 SV=2
Length = 667
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 33/50 (66%)
Query: 26 QLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
+ ++ G Y GY ++ SL ++ G++G++ + LFVRKIY+++K+D
Sbjct: 618 KFKLGGFTTIVLYVGYSSVISLLCCLVTGSIGFISSMLFVRKIYSSIKVD 667
>sp|Q7YTA6|PHG1C_DICDI Putative phagocytic receptor 1c OS=Dictyostelium discoideum
GN=phg1c PE=2 SV=1
Length = 655
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 37 FYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
+YF + +FS+ + + C ++G++G F +KIY+T+ D
Sbjct: 617 YYFMFSLVFSILVSLFCSSIGFLGNLWFTKKIYSTLHFD 655
>sp|Q04562|TMN2_YEAST Transmembrane 9 superfamily member 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TMN2 PE=1 SV=1
Length = 672
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 15 SVFNFV-TVRPQQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVK 73
S++ F+ ++ + ++ G+ Y GY + S ++ G +G+ + F+RKIY+ +K
Sbjct: 611 SIYTFIHSILFTKFKLGGVITVVLYLGYSLIISALCCVVTGAIGFFSSMFFIRKIYSAIK 670
Query: 74 ID 75
++
Sbjct: 671 VE 672
>sp|A4IFE9|TM9S1_BOVIN Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2
SV=1
Length = 606
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 25 QQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
++ M G QT +FGY L +M GT+ + + F+R IY +K+D
Sbjct: 556 RRSNMSGTVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>sp|Q66HF2|TM9S1_RAT Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1
PE=2 SV=1
Length = 589
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 25 QQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
++ M G QT +FGY L +M GT+ + + F+R IY +K+D
Sbjct: 539 RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 589
>sp|Q9DBU0|TM9S1_MOUSE Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2
SV=2
Length = 606
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 25 QQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
++ M G QT +FGY L +M GT+ + + F+R IY +K+D
Sbjct: 556 RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>sp|O15321|TM9S1_HUMAN Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2
SV=2
Length = 606
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 25 QQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
++ M G QT +FGY L +M GT+ + + F+R IY +K+D
Sbjct: 556 RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>sp|Q5R8F1|TM9S1_PONAB Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2
SV=1
Length = 606
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 25 QQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
++ M G QT +FGY L +M GT+ + + F+R IY +K+D
Sbjct: 556 RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>sp|Q55FP0|PHG1A_DICDI Putative phagocytic receptor 1a OS=Dictyostelium discoideum
GN=phg1a PE=2 SV=1
Length = 641
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 39 FGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75
F Y + SL + GT+G+ VRKIY+++ I+
Sbjct: 605 FSYSFIMSLAFAALTGTIGFYSCYFLVRKIYSSIHIN 641
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.145 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,335,771
Number of Sequences: 539616
Number of extensions: 825325
Number of successful extensions: 2640
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2613
Number of HSP's gapped (non-prelim): 27
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)