Query psy17181
Match_columns 75
No_of_seqs 100 out of 410
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:57:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278|consensus 99.9 1.8E-22 3.9E-27 159.6 6.9 68 4-75 561-628 (628)
2 KOG1277|consensus 99.8 5.9E-20 1.3E-24 143.7 6.0 69 3-75 525-593 (593)
3 PF02990 EMP70: Endomembrane p 95.7 0.004 8.6E-08 49.0 1.0 25 5-33 497-521 (521)
4 PF03302 VSP: Giardia variant- 50.2 6.7 0.00014 30.2 0.5 18 49-67 377-394 (397)
5 PF08038 Tom7: TOM7 family; I 32.6 24 0.00052 19.3 0.9 13 30-42 17-29 (42)
6 PF06196 DUF997: Protein of un 30.9 1.3E+02 0.0028 18.4 4.6 37 32-75 39-75 (80)
7 TIGR03546 conserved hypothetic 28.1 1.6E+02 0.0034 20.1 4.4 35 34-68 101-135 (154)
8 COG5102 SFT2 Membrane protein 23.7 1.4E+02 0.0031 21.4 3.7 49 4-59 76-124 (201)
9 PF14937 DUF4500: Domain of un 23.3 1.5E+02 0.0032 18.8 3.3 25 51-75 46-74 (86)
10 PF13198 DUF4014: Protein of u 21.4 78 0.0017 19.4 1.8 27 25-51 11-37 (72)
11 PF12263 DUF3611: Protein of u 20.9 1.6E+02 0.0035 20.6 3.5 26 45-70 158-183 (183)
No 1
>KOG1278|consensus
Probab=99.87 E-value=1.8e-22 Score=159.63 Aligned_cols=68 Identities=38% Similarity=0.696 Sum_probs=66.5
Q ss_pred ecccchhhhhhhhHHhhhcccceeeeccchhhhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhcccCC
Q psy17181 4 VDSNHSLLGLPSVFNFVTVRPQQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75 (75)
Q Consensus 4 ~~~~~~~~flYSi~y~~~~~~~kl~~~g~~s~vlYfgY~~l~sl~~~l~~GtiGflas~~FVr~IY~~iK~D 75 (75)
=|+.|+|+|+||++|+++ |++++|+++++||||||++++++++++||+|||++|+|||||||+++|+|
T Consensus 561 sG~~avY~fiYsi~Y~~~----kL~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a~~~Fv~kIYssvKiD 628 (628)
T KOG1278|consen 561 SGSSAVYVFIYSIFYFFT----KLEISGFVSAVLYFGYSLIISLLFFLLTGTIGFLAAFWFVRKIYSSVKID 628 (628)
T ss_pred cCcchhhHHHHHHhhhhe----eeeecccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhheecC
Confidence 378999999999999999 99999999999999999999999999999999999999999999999998
No 2
>KOG1277|consensus
Probab=99.80 E-value=5.9e-20 Score=143.75 Aligned_cols=69 Identities=57% Similarity=0.979 Sum_probs=67.4
Q ss_pred eecccchhhhhhhhHHhhhcccceeeeccchhhhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhcccCC
Q psy17181 3 VVDSNHSLLGLPSVFNFVTVRPQQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75 (75)
Q Consensus 3 ~~~~~~~~~flYSi~y~~~~~~~kl~~~g~~s~vlYfgY~~l~sl~~~l~~GtiGflas~~FVr~IY~~iK~D 75 (75)
-.+|+|.|+.+||++|++. |++|+|+.|+..|||||+++|.+++++||+||+.++..||||||+|+|.|
T Consensus 525 s~~ST~~yvy~Ys~yYy~~----ktkMsG~fQTsfyFGYm~~f~~~lgim~Gtigy~gt~~FVR~IY~nvK~d 593 (593)
T KOG1277|consen 525 SAGSTALYVYLYSFYYYFF----KTKMSGLFQTSFYFGYMAVFCYALGLMCGTIGYVGTLLFVRKIYRNVKID 593 (593)
T ss_pred ccccceeehhhhHHHHHhh----hccccchhhhhhhhHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHhhccCC
Confidence 3689999999999999999 99999999999999999999999999999999999999999999999998
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=95.73 E-value=0.004 Score=49.00 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=23.2
Q ss_pred cccchhhhhhhhHHhhhcccceeeeccch
Q psy17181 5 DSNHSLLGLPSVFNFVTVRPQQLQMYGLF 33 (75)
Q Consensus 5 ~~~~~~~flYSi~y~~~~~~~kl~~~g~~ 33 (75)
+|+|.|+|+||++|+++ |++|+|++
T Consensus 497 ~s~~~y~f~Ysi~y~~~----~~~~~g~~ 521 (521)
T PF02990_consen 497 GSSGIYVFLYSIYYYFT----KLSMSGFV 521 (521)
T ss_pred cHHHHHHHHHHHHhhhe----eEEeeecC
Confidence 68899999999999999 99999984
No 4
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=50.22 E-value=6.7 Score=30.22 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=14.0
Q ss_pred HHHhhchhHHHHHHHHHHH
Q psy17181 49 LGIMCGTVGYVGTSLFVRK 67 (75)
Q Consensus 49 ~~l~~GtiGflas~~FVr~ 67 (75)
+-+.-|.|||| ++||+.|
T Consensus 377 vvvVgglvGfL-cWwf~cr 394 (397)
T PF03302_consen 377 VVVVGGLVGFL-CWWFICR 394 (397)
T ss_pred HHHHHHHHHHH-hhheeec
Confidence 33555899999 9999865
No 5
>PF08038 Tom7: TOM7 family; InterPro: IPR012621 This family consists of TOM7 family of mitochondrial import receptors. TOM7 forms part of the translocase of the outer mitochondrial membrane (TOM) complex and it appears to function as a modulator of the dynamics of the mitochondrial protein transport machinery by promoting the dissociation of subunits of the outer membrane translocase [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=32.61 E-value=24 Score=19.34 Aligned_cols=13 Identities=31% Similarity=0.950 Sum_probs=11.4
Q ss_pred ccchhhhHHHHHH
Q psy17181 30 YGLFQTTFYFGYM 42 (75)
Q Consensus 30 ~g~~s~vlYfgY~ 42 (75)
-|+++.++|+|+.
T Consensus 17 yGfIP~IlylG~~ 29 (42)
T PF08038_consen 17 YGFIPLILYLGFR 29 (42)
T ss_pred eeehHHHHHHhhc
Confidence 3999999999985
No 6
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=30.95 E-value=1.3e+02 Score=18.37 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=27.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhcccCC
Q psy17181 32 LFQTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75 (75)
Q Consensus 32 ~~s~vlYfgY~~l~sl~~~l~~GtiGflas~~FVr~IY~~iK~D 75 (75)
....-++|-|+.+...++++ ..+.+.||++|+.+-.|
T Consensus 39 i~GlPlWF~~SCi~~~il~~-------~l~~~~vk~~Fkd~~Ld 75 (80)
T PF06196_consen 39 IFGLPLWFFYSCIGGPILFI-------ILVWLMVKFFFKDIPLD 75 (80)
T ss_pred ccCCcHHHHHHHHHHHHHHH-------HHHHHHHHHHhhcCCCC
Confidence 56678899998877666653 45778899999887655
No 7
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=28.07 E-value=1.6e+02 Score=20.14 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q psy17181 34 QTTFYFGYMALFSLGLGIMCGTVGYVGTSLFVRKI 68 (75)
Q Consensus 34 s~vlYfgY~~l~sl~~~l~~GtiGflas~~FVr~I 68 (75)
+..-+.-+..+-+++.++.+|.+.+..|.+.+++-
T Consensus 101 ~l~~f~~tl~~Gg~l~Gli~~~~~Y~ls~~lI~~Y 135 (154)
T TIGR03546 101 PLARFNNTIVMGSFVVGLILLPPAFAISKVIIAKY 135 (154)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556788899999999999999999998654
No 8
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=23.68 E-value=1.4e+02 Score=21.44 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=35.9
Q ss_pred ecccchhhhhhhhHHhhhcccceeeeccchhhhHHHHHHHHHHHHHHHhhchhHHH
Q psy17181 4 VDSNHSLLGLPSVFNFVTVRPQQLQMYGLFQTTFYFGYMALFSLGLGIMCGTVGYV 59 (75)
Q Consensus 4 ~~~~~~~~flYSi~y~~~~~~~kl~~~g~~s~vlYfgY~~l~sl~~~l~~GtiGfl 59 (75)
.|+.+++.++|..+=.....|+|.- ++|-.=+.+..+.++...|...++
T Consensus 76 LGa~ac~a~~~fmfpVl~lkPrkFi-------LlwTmgslLfvl~Fg~l~Gf~ayl 124 (201)
T COG5102 76 LGAGACSAFLYFMFPVLRLKPRKFI-------LLWTMGSLLFVLMFGFLLGFRAYL 124 (201)
T ss_pred hhhHHHHHHHHHHHHHHhcCcccee-------eehhHHHHHHHHHHHHHHhHHHHH
Confidence 5778888888888877665555443 556666777778888888888876
No 9
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=23.32 E-value=1.5e+02 Score=18.79 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=12.0
Q ss_pred HhhchhHHHHHHHH---HHH-HhhcccCC
Q psy17181 51 IMCGTVGYVGTSLF---VRK-IYATVKID 75 (75)
Q Consensus 51 l~~GtiGflas~~F---Vr~-IY~~iK~D 75 (75)
-++|.+|+++-+-- ..+ .|.+++.|
T Consensus 46 a~~~c~gYi~Ym~~~~en~~~~Y~av~sd 74 (86)
T PF14937_consen 46 AITLCVGYIAYMHATYENKKDYYEAVDSD 74 (86)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhhccC
Confidence 33444444444333 333 66666655
No 10
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=21.38 E-value=78 Score=19.42 Aligned_cols=27 Identities=11% Similarity=0.018 Sum_probs=20.3
Q ss_pred ceeeeccchhhhHHHHHHHHHHHHHHH
Q psy17181 25 QQLQMYGLFQTTFYFGYMALFSLGLGI 51 (75)
Q Consensus 25 ~kl~~~g~~s~vlYfgY~~l~sl~~~l 51 (75)
+|.+.+.+.=.++|.-||..+|-++++
T Consensus 11 rrSr~~efLF~ilfIvlmipI~pll~~ 37 (72)
T PF13198_consen 11 RRSRKTEFLFFILFIVLMIPISPLLFV 37 (72)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777788888899888877664
No 11
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=20.93 E-value=1.6e+02 Score=20.64 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=20.8
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHhh
Q psy17181 45 FSLGLGIMCGTVGYVGTSLFVRKIYA 70 (75)
Q Consensus 45 ~sl~~~l~~GtiGflas~~FVr~IY~ 70 (75)
.+-.-.++.+.+|...|.|..++|++
T Consensus 158 qAn~n~i~AHfvGlv~sLwLL~rv~r 183 (183)
T PF12263_consen 158 QANTNTILAHFVGLVFSLWLLRRVTR 183 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445577799999999999999974
Done!