Query psy17181
Match_columns 75
No_of_seqs 100 out of 410
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:57:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ww9_B Protein transport prote 15.0 2E+02 0.0069 16.9 3.8 24 42-65 50-73 (80)
2 1rh5_B Preprotein translocase 13.9 2.1E+02 0.0071 16.5 3.8 22 43-64 38-59 (74)
3 3mp7_B Preprotein translocase 9.7 2.7E+02 0.0093 15.3 3.8 21 44-64 35-55 (61)
4 2wwb_B SEC61gamma, protein tra 7.6 2.5E+02 0.0084 15.9 2.0 21 44-64 38-58 (68)
5 1vf5_E Protein PET L; photosyn 5.0 4.1E+02 0.014 13.1 2.1 9 45-53 12-20 (32)
6 2f95_B Sensory rhodopsin II tr 4.4 4.2E+02 0.014 15.1 1.8 17 56-72 71-87 (163)
7 2zt9_E Cytochrome B6-F complex 4.2 4.8E+02 0.016 12.7 2.1 14 41-54 7-20 (31)
8 3rii_A Ubiquitin carboxyl-term 4.1 3.2E+02 0.011 18.7 1.2 11 52-62 92-102 (233)
9 3b9w_A Ammonium transporter fa 3.9 7.1E+02 0.024 18.4 3.0 31 45-75 261-291 (407)
10 1xd3_A Ubiquitin carboxyl-term 3.8 3.1E+02 0.01 18.7 0.9 11 52-62 94-104 (230)
No 1
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=15.02 E-value=2e+02 Score=16.88 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHH
Q psy17181 42 MALFSLGLGIMCGTVGYVGTSLFV 65 (75)
Q Consensus 42 ~~l~sl~~~l~~GtiGflas~~FV 65 (75)
.+-++.+=++..|.+||..-+.++
T Consensus 50 iak~t~iG~~imG~IGfiIkLI~i 73 (80)
T 2ww9_B 50 IVKAVGIGFIAVGIIGYAIKLIHI 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667788999998766653
No 2
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=13.86 E-value=2.1e+02 Score=16.47 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhchhHHHHHHHH
Q psy17181 43 ALFSLGLGIMCGTVGYVGTSLF 64 (75)
Q Consensus 43 ~l~sl~~~l~~GtiGflas~~F 64 (75)
+-++.+-++..|.+||..-+.+
T Consensus 38 ak~~~iG~~imG~IGfiIkli~ 59 (74)
T 1rh5_B 38 AKVTALGISLLGIIGYIIHVPA 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677799999876665
No 3
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=9.74 E-value=2.7e+02 Score=15.31 Aligned_cols=21 Identities=14% Similarity=-0.075 Sum_probs=14.4
Q ss_pred HHHHHHHHhhchhHHHHHHHH
Q psy17181 44 LFSLGLGIMCGTVGYVGTSLF 64 (75)
Q Consensus 44 l~sl~~~l~~GtiGflas~~F 64 (75)
-++.+-++..|.+||..-..+
T Consensus 35 k~~~iG~~i~G~iGf~Ikli~ 55 (61)
T 3mp7_B 35 KITGLGIILIGLIGMLIRIVG 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556677799999766554
No 4
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=7.58 E-value=2.5e+02 Score=15.88 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=13.7
Q ss_pred HHHHHHHHhhchhHHHHHHHH
Q psy17181 44 LFSLGLGIMCGTVGYVGTSLF 64 (75)
Q Consensus 44 l~sl~~~l~~GtiGflas~~F 64 (75)
-++.+=++..|.+||..-+.+
T Consensus 38 k~~~iG~~i~G~IGf~IklI~ 58 (68)
T 2wwb_B 38 MATAIGFAIMGFIGFFVKLIH 58 (68)
T ss_dssp HHSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555677799999755544
No 5
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=5.03 E-value=4.1e+02 Score=13.05 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=3.7
Q ss_pred HHHHHHHhh
Q psy17181 45 FSLGLGIMC 53 (75)
Q Consensus 45 ~sl~~~l~~ 53 (75)
+...++++.
T Consensus 12 l~~~f~iA~ 20 (32)
T 1vf5_E 12 IALFFGIAV 20 (32)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344433
No 6
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=4.44 E-value=4.2e+02 Score=15.13 Aligned_cols=17 Identities=6% Similarity=-0.205 Sum_probs=2.7
Q ss_pred hHHHHHHHHHHHHhhcc
Q psy17181 56 VGYVGTSLFVRKIYATV 72 (75)
Q Consensus 56 iGflas~~FVr~IY~~i 72 (75)
++.+.++++.|++.+.+
T Consensus 71 ~~~~~~~~~~~~i~~pl 87 (163)
T 2f95_B 71 NLGLVAATLGGDTAASL 87 (163)
T ss_dssp HHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555666665443
No 7
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=4.16 E-value=4.8e+02 Score=12.67 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhhc
Q psy17181 41 YMALFSLGLGIMCG 54 (75)
Q Consensus 41 Y~~l~sl~~~l~~G 54 (75)
|...+...++++.|
T Consensus 7 y~~~l~~~~~iA~G 20 (31)
T 2zt9_E 7 YIGFLALFTGIAAG 20 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 8
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=4.10 E-value=3.2e+02 Score=18.66 Aligned_cols=11 Identities=18% Similarity=0.075 Sum_probs=7.0
Q ss_pred hhchhHHHHHH
Q psy17181 52 MCGTVGYVGTS 62 (75)
Q Consensus 52 ~~GtiGflas~ 62 (75)
+|||++.+.+.
T Consensus 92 ACgT~ALLh~l 102 (233)
T 3rii_A 92 ASATQAIVSVL 102 (233)
T ss_dssp GHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 56777766544
No 9
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=3.89 E-value=7.1e+02 Score=18.44 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=15.7
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHhhcccCC
Q psy17181 45 FSLGLGIMCGTVGYVGTSLFVRKIYATVKID 75 (75)
Q Consensus 45 ~sl~~~l~~GtiGflas~~FVr~IY~~iK~D 75 (75)
.++++++..|.+...+..+.-+++=+..|+|
T Consensus 261 ~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iD 291 (407)
T 3b9w_A 261 GAFVIGLLGGAISVVGFVFIQPMLESKAKTI 291 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455666666666554443333333345655
No 10
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=3.82 E-value=3.1e+02 Score=18.70 Aligned_cols=11 Identities=36% Similarity=0.912 Sum_probs=7.1
Q ss_pred hhchhHHHHHH
Q psy17181 52 MCGTVGYVGTS 62 (75)
Q Consensus 52 ~~GtiGflas~ 62 (75)
+|||++.+.+.
T Consensus 94 ACgT~AlLh~l 104 (230)
T 1xd3_A 94 ACGTIGLIHAI 104 (230)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 56777776554
Done!