Query psy17181
Match_columns 75
No_of_seqs 100 out of 410
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 23:57:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17181.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17181hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2erla_ a.10.1.1 (A:) ER-1 {Eu 17.1 11 0.00082 18.3 -0.3 11 5-15 24-34 (40)
2 d1rh5b_ f.23.28.1 (B:) Preprot 13.0 95 0.0069 15.9 3.3 22 43-64 27-48 (56)
3 d1jfla1 c.78.2.1 (A:1-115) Asp 6.2 1.3E+02 0.0096 16.4 1.8 20 53-72 7-26 (115)
4 d2axtm1 f.23.35.1 (M:1-36) Pho 4.5 2E+02 0.014 13.3 1.5 10 56-65 6-15 (36)
5 d1cmxa_ d.3.1.6 (A:) Ubiquitin 4.4 1.2E+02 0.0088 19.0 0.9 11 52-62 84-94 (229)
6 d1xmeb2 f.17.2.1 (B:3-36) Bact 3.5 2.5E+02 0.018 12.5 1.4 12 54-65 15-26 (34)
7 d2etla1 d.3.1.6 (A:1-223) Ubiq 3.4 1.7E+02 0.012 18.3 0.9 11 52-62 89-99 (223)
8 d1xd3a_ d.3.1.6 (A:) Ubiquitin 2.9 2E+02 0.015 17.8 0.9 11 52-62 93-103 (229)
9 d1eq2a_ c.2.1.2 (A:) ADP-L-gly 2.6 1.8E+02 0.013 16.8 0.4 16 52-68 4-19 (307)
10 d3cx5c1 f.32.1.1 (C:262-385) M 2.5 2.7E+02 0.019 15.6 1.0 16 30-45 90-105 (124)
No 1
>d2erla_ a.10.1.1 (A:) ER-1 {Euplotes raikovi [TaxId: 5938]}
Probab=17.08 E-value=11 Score=18.25 Aligned_cols=11 Identities=18% Similarity=0.135 Sum_probs=8.2
Q ss_pred cccchhhhhhh
Q psy17181 5 DSNHSLLGLPS 15 (75)
Q Consensus 5 ~~~~~~~flYS 15 (75)
|.+|+|+.+||
T Consensus 24 drtgcymyiys 34 (40)
T d2erla_ 24 DRTGCYMYIYS 34 (40)
T ss_dssp HHHHHHHHHHH
T ss_pred cccceEEEeec
Confidence 45788888876
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=12.99 E-value=95 Score=15.86 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhchhHHHHHHHH
Q psy17181 43 ALFSLGLGIMCGTVGYVGTSLF 64 (75)
Q Consensus 43 ~l~sl~~~l~~GtiGflas~~F 64 (75)
+..+.+=++..|.|||+.-..+
T Consensus 27 a~v~~iG~~i~G~IGf~I~li~ 48 (56)
T d1rh5b_ 27 AKVTALGISLLGIIGYIIHVPA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677899999866554
No 3
>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=6.17 E-value=1.3e+02 Score=16.37 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=16.6
Q ss_pred hchhHHHHHHHHHHHHhhcc
Q psy17181 53 CGTVGYVGTSLFVRKIYATV 72 (75)
Q Consensus 53 ~GtiGflas~~FVr~IY~~i 72 (75)
.|-+|..|+..|.|+|....
T Consensus 7 IGGmgp~at~~yy~~i~~~~ 26 (115)
T d1jfla1 7 LGGMGPLATAELFRRIVIKT 26 (115)
T ss_dssp EECSSHHHHHHHHHHHHHTC
T ss_pred ccCcCHHHHHHHHHHHHHHH
Confidence 37788999999999997654
No 4
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.51 E-value=2e+02 Score=13.35 Aligned_cols=10 Identities=50% Similarity=0.999 Sum_probs=5.8
Q ss_pred hHHHHHHHHH
Q psy17181 56 VGYVGTSLFV 65 (75)
Q Consensus 56 iGflas~~FV 65 (75)
.|++++..|+
T Consensus 6 Lg~iAt~LFi 15 (36)
T d2axtm1 6 LGLIATALFV 15 (36)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566666554
No 5
>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=4.41 E-value=1.2e+02 Score=18.95 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=7.0
Q ss_pred hhchhHHHHHH
Q psy17181 52 MCGTVGYVGTS 62 (75)
Q Consensus 52 ~~GtiGflas~ 62 (75)
+|||++.+-+.
T Consensus 84 ACgTiAlLh~l 94 (229)
T d1cmxa_ 84 ACGLYAILHSL 94 (229)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 56777766554
No 6
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=3.45 E-value=2.5e+02 Score=12.52 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=6.6
Q ss_pred chhHHHHHHHHH
Q psy17181 54 GTVGYVGTSLFV 65 (75)
Q Consensus 54 GtiGflas~~FV 65 (75)
|+..|...+.||
T Consensus 15 gwlafslamlfv 26 (34)
T d1xmeb2 15 GWLAFSLAMLFV 26 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 455555555554
No 7
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.40 E-value=1.7e+02 Score=18.26 Aligned_cols=11 Identities=36% Similarity=0.915 Sum_probs=6.6
Q ss_pred hhchhHHHHHH
Q psy17181 52 MCGTVGYVGTS 62 (75)
Q Consensus 52 ~~GtiGflas~ 62 (75)
+|||++.+-+.
T Consensus 89 ACgT~AlLh~l 99 (223)
T d2etla1 89 SCGTIGLIHAV 99 (223)
T ss_dssp CHHHHHHHHHH
T ss_pred hhhHHHHHHHH
Confidence 56676666543
No 8
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.87 E-value=2e+02 Score=17.84 Aligned_cols=11 Identities=36% Similarity=0.912 Sum_probs=7.2
Q ss_pred hhchhHHHHHH
Q psy17181 52 MCGTVGYVGTS 62 (75)
Q Consensus 52 ~~GtiGflas~ 62 (75)
+|||++.+-+.
T Consensus 93 ACgT~Allh~l 103 (229)
T d1xd3a_ 93 ACGTIGLIHAI 103 (229)
T ss_dssp CHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 57777776553
No 9
>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}
Probab=2.65 E-value=1.8e+02 Score=16.80 Aligned_cols=16 Identities=25% Similarity=0.752 Sum_probs=8.6
Q ss_pred hhchhHHHHHHHHHHHH
Q psy17181 52 MCGTVGYVGTSLFVRKI 68 (75)
Q Consensus 52 ~~GtiGflas~~FVr~I 68 (75)
.+|.-||+.+ .+++++
T Consensus 4 ITGgsGfIGs-~lv~~L 19 (307)
T d1eq2a_ 4 VTGGAGFIGS-NIVKAL 19 (307)
T ss_dssp EETTTSHHHH-HHHHHH
T ss_pred EecCccHHHH-HHHHHH
Confidence 4566676643 344444
No 10
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.52 E-value=2.7e+02 Score=15.62 Aligned_cols=16 Identities=31% Similarity=0.712 Sum_probs=10.2
Q ss_pred ccchhhhHHHHHHHHH
Q psy17181 30 YGLFQTTFYFGYMALF 45 (75)
Q Consensus 30 ~g~~s~vlYfgY~~l~ 45 (75)
-|...+++||+|..++
T Consensus 90 ~gqi~s~~YF~~Fli~ 105 (124)
T d3cx5c1 90 MGQIATFIYFAYFLII 105 (124)
T ss_dssp HHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556677788776544
Done!