RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17181
         (75 letters)



>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score = 25.2 bits (55), Expect = 0.63
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 50 GIMCGTVGYVGTSLFVRKIYATVKID 75
           +  G + + G + F +  +A V++D
Sbjct: 35 NVQPGILRFKGETSFAKGFWAGVELD 60


>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 160

 Score = 24.3 bits (52), Expect = 1.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 50 GIMCGTVGYVGTSLFVRKIYATVKID 75
          G   G V ++G + F +  +  V++D
Sbjct: 42 GTKAGVVRFLGETDFAKGEWCGVELD 67


>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
           chain {Azotobacter vinelandii [TaxId: 354]}
          Length = 477

 Score = 23.5 bits (50), Expect = 3.1
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 56  VGYVGTSLFVRKIYATV 72
            G+ G ++F R +  T+
Sbjct: 448 HGFDGFAIFARDMDMTL 464


>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59
          (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 102

 Score = 23.2 bits (50), Expect = 3.4
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 50 GIMCGTVGYVGTSLFVRKIYATVKID 75
          G   G V + G + F    +  +++D
Sbjct: 36 GQKQGIVRFYGKTDFAPGYWYGIELD 61


>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
           chain {Clostridium pasteurianum [TaxId: 1501]}
          Length = 525

 Score = 23.2 bits (49), Expect = 4.5
 Identities = 3/17 (17%), Positives = 7/17 (41%)

Query: 56  VGYVGTSLFVRKIYATV 72
            G+ G   F  ++   +
Sbjct: 490 AGFRGVVNFGHELVNGI 506


>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 88

 Score = 22.4 bits (48), Expect = 4.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 50 GIMCGTVGYVGTSLFVRKIYATVKID 75
              G V YVG + F    +  V++D
Sbjct: 28 AHKTGVVRYVGPADFQEGTWVGVELD 53


>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 102

 Score = 22.9 bits (49), Expect = 4.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 50 GIMCGTVGYVGTSLFVRKIYATVKID 75
          G   GT+ + GT+ F    +A +++D
Sbjct: 35 GQKVGTLRFCGTTEFASGQWAGIELD 60


>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 71

 Score = 22.0 bits (47), Expect = 5.8
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 50 GIMCGTVGYVGTSLFVRKIYATVKID 75
          G   G V ++G + F +  +  V++D
Sbjct: 11 GTKAGVVRFLGETDFAKGEWCGVELD 36


>d2hlja1 d.38.1.1 (A:1-156) Hypothetical protein PP0301
          {Pseudomonas putida [TaxId: 303]}
          Length = 156

 Score = 22.6 bits (47), Expect = 7.1
 Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 13 LPSVFNF-VTVRPQQLQMYGLFQTTFYFGYM 42
          +P++  +  TV+   +   G  +  FY    
Sbjct: 1  MPALITYRTTVQEDWVDYNGHLRDAFYLLIF 31


>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59
          (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 83

 Score = 22.0 bits (47), Expect = 7.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 50 GIMCGTVGYVGTSLFVRKIYATVKID 75
          G   GT+ + GT+ F    +  V++D
Sbjct: 21 GQKTGTLRFCGTTEFASGQWVGVELD 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.145    0.434 

Gapped
Lambda     K      H
   0.267   0.0443    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 270,225
Number of extensions: 9712
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 10
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.6 bits)