Query psy17183
Match_columns 145
No_of_seqs 128 out of 1200
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 23:59:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0450 AhpC Peroxiredoxin [Po 100.0 1.5E-40 3.2E-45 252.2 13.5 138 1-145 48-185 (194)
2 PRK15000 peroxidase; Provision 100.0 1.5E-34 3.3E-39 222.4 15.0 137 1-144 49-185 (200)
3 KOG0852|consensus 100.0 1.1E-34 2.4E-39 216.4 11.8 137 1-144 48-184 (196)
4 PRK10382 alkyl hydroperoxide r 100.0 1.4E-33 2.9E-38 215.3 14.2 134 1-144 46-180 (187)
5 PRK13191 putative peroxiredoxi 100.0 2E-33 4.3E-38 218.4 14.9 136 1-144 48-188 (215)
6 PRK13190 putative peroxiredoxi 100.0 5.5E-33 1.2E-37 213.8 15.0 136 1-144 42-177 (202)
7 PTZ00137 2-Cys peroxiredoxin; 100.0 5.9E-33 1.3E-37 221.1 15.1 136 1-144 113-248 (261)
8 PRK13189 peroxiredoxin; Provis 100.0 2.4E-32 5.1E-37 213.2 15.1 136 1-144 50-190 (222)
9 cd03016 PRX_1cys Peroxiredoxin 100.0 3.3E-32 7.2E-37 209.4 14.7 136 1-144 40-177 (203)
10 PRK13599 putative peroxiredoxi 100.0 8E-32 1.7E-36 209.4 14.8 136 1-144 43-183 (215)
11 PTZ00253 tryparedoxin peroxida 100.0 5E-31 1.1E-35 202.1 14.5 137 1-144 51-187 (199)
12 TIGR03137 AhpC peroxiredoxin. 100.0 2.1E-29 4.6E-34 191.5 14.4 135 1-145 46-181 (187)
13 KOG0854|consensus 100.0 3.8E-28 8.2E-33 181.9 12.3 139 1-144 47-191 (224)
14 cd03015 PRX_Typ2cys Peroxiredo 100.0 1.7E-27 3.7E-32 178.3 14.5 130 1-137 44-173 (173)
15 COG1225 Bcp Peroxiredoxin [Pos 99.9 1.7E-25 3.6E-30 166.0 12.7 105 2-121 46-156 (157)
16 cd03013 PRX5_like Peroxiredoxi 99.8 1.3E-18 2.7E-23 128.9 11.0 95 1-108 44-145 (155)
17 PRK00522 tpx lipid hydroperoxi 99.8 2.7E-18 5.9E-23 128.3 12.9 102 2-119 60-167 (167)
18 cd03018 PRX_AhpE_like Peroxire 99.8 1.7E-17 3.8E-22 120.0 12.3 105 1-119 43-149 (149)
19 cd03014 PRX_Atyp2cys Peroxired 99.7 6.4E-17 1.4E-21 116.8 12.0 100 1-115 41-142 (143)
20 cd03017 PRX_BCP Peroxiredoxin 99.7 1.4E-16 3.1E-21 114.0 11.1 99 1-114 38-139 (140)
21 PRK09437 bcp thioredoxin-depen 99.7 3.8E-16 8.2E-21 114.3 11.8 103 1-118 45-153 (154)
22 cd02970 PRX_like2 Peroxiredoxi 99.7 2.9E-16 6.3E-21 113.0 10.4 88 1-102 38-148 (149)
23 KOG0855|consensus 99.7 1.7E-16 3.8E-21 118.4 8.6 104 2-119 106-210 (211)
24 cd02969 PRX_like1 Peroxiredoxi 99.7 1.4E-15 3.1E-20 113.2 13.0 113 2-134 40-171 (171)
25 cd02971 PRX_family Peroxiredox 99.7 1.1E-15 2.4E-20 109.2 11.6 96 1-110 37-136 (140)
26 PF00578 AhpC-TSA: AhpC/TSA fa 99.7 8.2E-16 1.8E-20 107.6 10.3 85 1-99 40-124 (124)
27 cd03012 TlpA_like_DipZ_like Tl 99.6 3.1E-15 6.7E-20 106.2 10.5 83 1-103 37-125 (126)
28 PF08534 Redoxin: Redoxin; In 99.6 2.1E-14 4.6E-19 103.7 9.9 91 1-105 43-136 (146)
29 cd00340 GSH_Peroxidase Glutath 99.5 1.3E-13 2.7E-18 101.2 8.0 91 2-105 36-144 (152)
30 PLN02412 probable glutathione 99.5 3.5E-13 7.6E-18 100.7 10.0 101 2-120 44-163 (167)
31 PRK15412 thiol:disulfide inter 99.5 1.2E-12 2.6E-17 99.2 11.7 91 2-120 83-175 (185)
32 TIGR02540 gpx7 putative glutat 99.4 4.8E-13 1E-17 98.1 8.6 101 2-120 37-152 (153)
33 PRK03147 thiol-disulfide oxido 99.4 2.4E-12 5.2E-17 95.2 12.4 97 1-121 75-172 (173)
34 PTZ00256 glutathione peroxidas 99.4 7.1E-13 1.5E-17 100.3 8.8 103 1-120 55-180 (183)
35 PTZ00056 glutathione peroxidas 99.4 5E-12 1.1E-16 97.2 10.4 102 2-121 54-178 (199)
36 PLN02399 phospholipid hydroper 99.4 6.1E-12 1.3E-16 99.3 10.3 103 2-121 114-234 (236)
37 TIGR00385 dsbE periplasmic pro 99.3 1.5E-11 3.3E-16 92.1 11.4 90 2-119 78-169 (173)
38 cd02968 SCO SCO (an acronym fo 99.3 1.5E-11 3.2E-16 88.0 9.1 87 1-101 37-141 (142)
39 cd03010 TlpA_like_DsbE TlpA-li 99.3 3.7E-11 8.1E-16 84.9 10.6 81 2-105 40-122 (127)
40 cd02966 TlpA_like_family TlpA- 99.3 7.7E-11 1.7E-15 79.5 10.1 82 1-102 33-116 (116)
41 cd03008 TryX_like_RdCVF Trypar 99.2 6.7E-11 1.4E-15 87.2 8.9 79 1-99 39-128 (146)
42 TIGR02661 MauD methylamine deh 99.2 9.1E-11 2E-15 89.3 9.6 92 1-118 88-179 (189)
43 TIGR01626 ytfJ_HI0045 conserve 99.2 1E-10 2.2E-15 89.2 8.7 97 2-120 74-182 (184)
44 cd02967 mauD Methylamine utili 99.1 5.3E-10 1.2E-14 77.2 9.4 78 1-100 35-112 (114)
45 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 7.6E-10 1.6E-14 77.4 10.1 85 1-115 34-120 (123)
46 COG2077 Tpx Peroxiredoxin [Pos 99.1 8.1E-10 1.7E-14 81.3 8.6 88 1-103 59-150 (158)
47 PRK14018 trifunctional thiored 99.1 1.8E-09 3.8E-14 93.7 11.8 94 2-118 71-170 (521)
48 PLN02919 haloacid dehalogenase 99.0 2.7E-09 5.7E-14 99.2 11.2 95 2-120 435-535 (1057)
49 cd03009 TryX_like_TryX_NRX Try 98.9 3.2E-09 6.9E-14 75.4 6.8 82 2-101 33-117 (131)
50 PRK13728 conjugal transfer pro 98.9 8.7E-09 1.9E-13 78.4 9.2 89 1-123 83-173 (181)
51 PF13905 Thioredoxin_8: Thiore 98.9 1.2E-08 2.6E-13 68.4 8.0 75 2-96 16-95 (95)
52 COG0678 AHP1 Peroxiredoxin [Po 98.9 1.1E-08 2.5E-13 75.3 7.9 90 2-104 53-149 (165)
53 cd02964 TryX_like_family Trypa 98.8 2.9E-08 6.3E-13 70.8 9.0 82 1-101 31-117 (132)
54 KOG0541|consensus 98.7 2E-08 4.4E-13 74.4 5.7 94 2-108 60-159 (171)
55 PRK10606 btuE putative glutath 98.7 1E-07 2.2E-12 72.6 9.6 104 2-120 39-180 (183)
56 PF13911 AhpC-TSA_2: AhpC/TSA 98.7 1.4E-07 2.9E-12 66.0 9.3 80 9-102 2-113 (115)
57 TIGR02738 TrbB type-F conjugat 98.7 1.4E-07 3.1E-12 69.9 8.4 84 1-120 64-152 (153)
58 PF10417 1-cysPrx_C: C-termina 98.6 5.4E-09 1.2E-13 60.9 -0.0 26 119-144 1-26 (40)
59 TIGR02740 TraF-like TraF-like 97.8 0.00022 4.8E-09 57.4 9.6 84 1-121 180-264 (271)
60 cd02950 TxlA TRX-like protein 97.6 0.00092 2E-08 48.6 9.8 46 68-123 67-112 (142)
61 COG0386 BtuE Glutathione perox 97.5 0.0011 2.3E-08 49.4 9.2 101 3-120 40-159 (162)
62 PF02630 SCO1-SenC: SCO1/SenC; 97.4 0.00035 7.5E-09 52.5 5.9 86 2-101 68-172 (174)
63 PF09695 YtfJ_HI0045: Bacteria 97.3 0.0036 7.8E-08 46.7 9.9 93 7-118 56-155 (160)
64 PF13098 Thioredoxin_2: Thiore 97.3 0.001 2.2E-08 45.3 6.5 74 20-117 38-112 (112)
65 PF05988 DUF899: Bacterial pro 97.2 0.0068 1.5E-07 47.2 11.0 119 1-137 87-207 (211)
66 cd02951 SoxW SoxW family; SoxW 97.1 0.0019 4.2E-08 45.2 6.2 47 65-121 72-119 (125)
67 COG1999 Uncharacterized protei 97.1 0.011 2.4E-07 45.8 10.7 102 2-121 83-204 (207)
68 cd02985 TRX_CDSP32 TRX family, 97.0 0.012 2.6E-07 40.0 9.1 40 68-119 62-101 (103)
69 PF13728 TraF: F plasmid trans 96.8 0.013 2.9E-07 45.6 8.9 79 1-116 134-213 (215)
70 cd02963 TRX_DnaJ TRX domain, D 96.4 0.037 7.9E-07 38.2 8.5 49 61-120 63-111 (111)
71 TIGR02739 TraF type-F conjugat 96.0 0.065 1.4E-06 43.0 8.8 82 1-119 164-246 (256)
72 cd02948 TRX_NDPK TRX domain, T 95.8 0.098 2.1E-06 35.3 8.1 43 66-120 60-102 (102)
73 cd02956 ybbN ybbN protein fami 95.7 0.15 3.2E-06 33.6 8.3 46 61-117 50-95 (96)
74 COG3054 Predicted transcriptio 95.5 0.048 1E-06 40.7 6.0 52 61-119 129-181 (184)
75 PF00837 T4_deiodinase: Iodoth 95.3 0.14 3.1E-06 40.6 8.4 55 58-121 182-237 (237)
76 PRK13703 conjugal pilus assemb 95.3 0.18 3.8E-06 40.4 9.0 83 1-120 157-240 (248)
77 PRK09381 trxA thioredoxin; Pro 95.3 0.25 5.5E-06 33.3 8.8 48 61-119 59-106 (109)
78 cd03005 PDI_a_ERp46 PDIa famil 95.2 0.19 4E-06 33.2 7.6 35 63-104 59-93 (102)
79 PF05176 ATP-synt_10: ATP10 pr 94.9 0.33 7.2E-06 38.8 9.5 44 58-105 193-238 (252)
80 cd02994 PDI_a_TMX PDIa family, 94.8 0.47 1E-05 31.4 8.9 44 63-118 57-100 (101)
81 KOG4498|consensus 94.8 0.14 3.1E-06 39.3 6.7 104 1-118 65-195 (197)
82 KOG2501|consensus 94.4 0.21 4.6E-06 37.3 6.9 82 2-100 48-132 (157)
83 cd02953 DsbDgamma DsbD gamma f 94.1 0.072 1.6E-06 35.8 3.5 42 66-117 61-103 (104)
84 KOG1651|consensus 93.7 0.58 1.3E-05 35.3 8.0 84 5-101 52-153 (171)
85 cd03065 PDI_b_Calsequestrin_N 93.7 0.18 3.9E-06 35.8 5.1 48 61-120 71-118 (120)
86 cd02958 UAS UAS family; UAS is 93.5 0.25 5.5E-06 33.9 5.5 45 66-120 65-110 (114)
87 COG4312 Uncharacterized protei 93.3 0.41 8.8E-06 37.8 6.8 62 1-76 93-154 (247)
88 cd02999 PDI_a_ERp44_like PDIa 93.1 0.75 1.6E-05 31.0 7.2 40 65-116 60-99 (100)
89 PRK11509 hydrogenase-1 operon 92.8 0.34 7.4E-06 35.1 5.4 86 17-121 30-124 (132)
90 PF13778 DUF4174: Domain of un 92.6 0.97 2.1E-05 31.8 7.5 45 68-121 68-112 (118)
91 KOG2792|consensus 91.7 0.34 7.4E-06 39.1 4.7 102 1-117 154-271 (280)
92 cd02962 TMX2 TMX2 family; comp 91.6 1.9 4.1E-05 31.8 8.3 40 63-103 88-127 (152)
93 cd03000 PDI_a_TMX3 PDIa family 91.4 1.8 3.8E-05 29.0 7.5 45 63-119 58-102 (104)
94 cd03002 PDI_a_MPD1_like PDI fa 91.4 1.5 3.2E-05 29.3 7.0 42 66-117 63-108 (109)
95 PF04592 SelP_N: Selenoprotein 91.4 2 4.4E-05 34.1 8.6 100 1-119 40-144 (238)
96 PRK10996 thioredoxin 2; Provis 90.3 0.93 2E-05 32.5 5.5 47 63-120 92-138 (139)
97 cd02993 PDI_a_APS_reductase PD 90.2 2.3 5.1E-05 28.8 7.3 45 63-116 62-108 (109)
98 TIGR01126 pdi_dom protein disu 90.1 0.9 1.9E-05 29.6 5.0 46 63-119 55-100 (102)
99 TIGR01068 thioredoxin thioredo 89.8 1.2 2.6E-05 28.8 5.4 48 61-119 52-99 (101)
100 cd02949 TRX_NTR TRX domain, no 89.7 1 2.2E-05 29.9 5.0 44 63-117 53-96 (97)
101 cd02998 PDI_a_ERp38 PDIa famil 89.2 2.3 5E-05 27.8 6.5 43 63-115 60-103 (105)
102 cd03003 PDI_a_ERdj5_N PDIa fam 89.2 2.9 6.2E-05 27.6 7.0 43 61-114 56-98 (101)
103 PRK00293 dipZ thiol:disulfide 88.7 0.6 1.3E-05 41.4 4.1 46 66-121 523-570 (571)
104 cd02961 PDI_a_family Protein D 88.4 0.61 1.3E-05 29.9 3.1 44 63-116 57-100 (101)
105 PF00085 Thioredoxin: Thioredo 88.3 5.1 0.00011 25.9 9.5 46 63-119 57-102 (103)
106 PF00255 GSHPx: Glutathione pe 87.3 1.5 3.2E-05 30.6 4.7 48 3-63 36-91 (108)
107 cd02965 HyaE HyaE family; HyaE 87.0 2 4.4E-05 30.2 5.2 39 60-105 66-104 (111)
108 cd02955 SSP411 TRX domain, SSP 86.5 3.8 8.2E-05 29.1 6.5 37 84-120 81-121 (124)
109 KOG0910|consensus 84.5 2 4.3E-05 31.9 4.3 51 59-120 97-147 (150)
110 cd03004 PDI_a_ERdj5_C PDIa fam 83.8 2.1 4.5E-05 28.4 4.0 46 61-115 57-102 (104)
111 cd02984 TRX_PICOT TRX domain, 83.8 2.8 6.2E-05 27.2 4.6 43 63-117 54-96 (97)
112 cd02996 PDI_a_ERp44 PDIa famil 83.7 2.3 5E-05 28.5 4.2 45 61-116 62-107 (108)
113 cd02954 DIM1 Dim1 family; Dim1 81.6 2.7 5.8E-05 29.6 3.9 54 59-119 50-109 (114)
114 TIGR03765 ICE_PFL_4695 integra 81.4 15 0.00033 25.6 7.5 67 5-94 36-102 (105)
115 KOG0907|consensus 81.1 15 0.00033 25.3 7.5 45 63-119 58-104 (106)
116 PHA02278 thioredoxin-like prot 81.1 5.1 0.00011 27.4 5.1 31 67-104 62-92 (103)
117 TIGR01295 PedC_BrcD bacterioci 80.5 12 0.00025 26.3 7.0 30 83-116 90-119 (122)
118 smart00594 UAS UAS domain. 78.8 6.7 0.00015 27.3 5.3 47 65-117 74-121 (122)
119 cd02997 PDI_a_PDIR PDIa family 78.6 5.7 0.00012 25.8 4.7 39 66-115 64-102 (104)
120 TIGR01352 tonB_Cterm TonB fami 78.6 7.1 0.00015 24.1 4.9 40 84-123 12-52 (74)
121 cd02947 TRX_family TRX family; 78.0 9.2 0.0002 23.5 5.4 44 63-117 49-92 (93)
122 PF11072 DUF2859: Protein of u 77.5 23 0.00049 26.0 7.8 67 5-94 74-140 (142)
123 PLN00410 U5 snRNP protein, DIM 76.3 7.8 0.00017 28.4 5.1 70 61-136 61-138 (142)
124 COG2179 Predicted hydrolase of 76.0 8.8 0.00019 29.1 5.4 51 7-73 49-99 (175)
125 PTZ00051 thioredoxin; Provisio 76.0 5.1 0.00011 26.0 3.8 34 63-103 57-90 (98)
126 PTZ00443 Thioredoxin domain-co 75.6 7.4 0.00016 30.5 5.2 47 63-120 92-138 (224)
127 cd03001 PDI_a_P5 PDIa family, 75.1 7.9 0.00017 25.2 4.6 44 63-116 58-101 (103)
128 TIGR00424 APS_reduc 5'-adenyly 74.5 24 0.00051 30.8 8.4 43 70-121 421-463 (463)
129 PF03544 TonB_C: Gram-negative 73.8 7.9 0.00017 24.2 4.2 40 84-123 18-58 (79)
130 cd02989 Phd_like_TxnDC9 Phosdu 73.2 16 0.00036 25.0 6.0 40 60-106 58-97 (113)
131 COG2143 Thioredoxin-related pr 72.7 11 0.00023 28.6 5.1 43 66-118 104-146 (182)
132 COG0821 gcpE 1-hydroxy-2-methy 72.5 9.3 0.0002 32.1 5.2 39 17-66 44-82 (361)
133 cd02975 PfPDO_like_N Pyrococcu 72.5 28 0.0006 23.8 9.9 29 58-92 55-84 (113)
134 cd02991 UAS_ETEA UAS family, E 72.4 14 0.00031 25.7 5.6 45 66-120 65-112 (116)
135 PF13192 Thioredoxin_3: Thiore 71.6 23 0.00049 22.4 6.6 47 58-118 30-76 (76)
136 cd02959 ERp19 Endoplasmic reti 71.0 4.3 9.4E-05 28.2 2.6 32 68-103 65-96 (117)
137 TIGR00411 redox_disulf_1 small 70.6 16 0.00035 22.7 5.1 40 65-119 41-80 (82)
138 cd08343 ED_TypeI_classII_C C-t 70.4 31 0.00068 23.5 8.3 19 85-103 100-118 (131)
139 PF03190 Thioredox_DsbH: Prote 70.0 19 0.00041 27.0 6.0 62 59-121 74-144 (163)
140 cd02952 TRP14_like Human TRX-r 69.4 17 0.00038 25.6 5.4 28 65-97 77-104 (119)
141 PTZ00102 disulphide isomerase; 68.7 38 0.00082 28.6 8.4 49 64-122 418-466 (477)
142 cd03006 PDI_a_EFP1_N PDIa fami 67.8 37 0.00081 23.4 7.7 44 61-115 67-111 (113)
143 cd08361 PpCmtC_N N-terminal do 67.3 36 0.00079 23.1 7.7 60 25-104 62-121 (124)
144 COG3118 Thioredoxin domain-con 66.6 9.4 0.0002 31.5 4.0 52 58-120 75-129 (304)
145 TIGR01130 ER_PDI_fam protein d 66.5 49 0.0011 27.5 8.5 48 63-121 61-109 (462)
146 cd08351 ChaP_like ChaP, an enz 66.5 28 0.0006 23.4 6.0 18 84-101 103-120 (123)
147 PTZ00102 disulphide isomerase; 65.9 33 0.00071 29.0 7.4 47 63-121 92-138 (477)
148 KOG4614|consensus 65.8 6.9 0.00015 31.4 3.0 35 85-120 249-283 (287)
149 PF05228 CHASE4: CHASE4 domain 64.0 8.7 0.00019 27.3 3.1 17 85-101 51-67 (161)
150 TIGR00412 redox_disulf_2 small 63.7 34 0.00075 21.5 7.6 31 58-97 30-60 (76)
151 cd02960 AGR Anterior Gradient 62.8 5.8 0.00013 28.6 1.9 23 81-103 77-99 (130)
152 PF02563 Poly_export: Polysacc 61.8 4.3 9.4E-05 26.4 1.1 34 86-119 31-65 (82)
153 cd07252 BphC1-RGP6_N_like N-te 61.5 46 0.001 22.2 8.3 19 85-103 100-118 (120)
154 COG0810 TonB Periplasmic prote 61.5 25 0.00054 27.6 5.5 54 69-127 172-226 (244)
155 PRK10819 transport protein Ton 61.2 16 0.00035 29.0 4.4 42 83-124 182-224 (246)
156 cd02957 Phd_like Phosducin (Ph 60.7 12 0.00027 25.3 3.3 34 63-104 63-96 (113)
157 PF13103 TonB_2: TonB C termin 60.6 27 0.0006 22.2 4.8 45 83-127 27-72 (85)
158 PF14595 Thioredoxin_9: Thiore 60.1 9.3 0.0002 27.2 2.6 72 20-102 40-116 (129)
159 PF08235 LNS2: LNS2 (Lipin/Ned 60.1 69 0.0015 23.8 8.0 38 7-46 30-70 (157)
160 cd08347 PcpA_C_like C-terminal 60.0 61 0.0013 23.3 7.1 57 22-103 65-121 (157)
161 COG4448 AnsA L-asparaginase II 59.5 22 0.00047 29.2 4.8 37 86-123 29-65 (339)
162 TIGR02187 GlrX_arch Glutaredox 59.4 31 0.00067 26.3 5.6 33 65-104 65-98 (215)
163 PLN02309 5'-adenylylsulfate re 59.3 72 0.0016 27.8 8.3 48 65-121 409-457 (457)
164 PF01217 Clat_adaptor_s: Clath 59.2 16 0.00034 26.0 3.7 38 85-122 3-40 (141)
165 PF11211 DUF2997: Protein of u 58.3 28 0.00061 20.7 4.1 29 87-117 2-30 (48)
166 cd07266 HPCD_N_class_II N-term 58.2 51 0.0011 21.7 6.4 18 85-102 101-118 (121)
167 PRK00366 ispG 4-hydroxy-3-meth 57.3 29 0.00063 29.3 5.4 40 16-66 49-88 (360)
168 PF11009 DUF2847: Protein of u 57.2 14 0.0003 25.7 3.0 30 66-101 66-95 (105)
169 PHA02125 thioredoxin-like prot 56.2 43 0.00093 20.9 5.1 42 63-117 32-73 (75)
170 PF04551 GcpE: GcpE protein; 55.0 25 0.00054 29.7 4.6 41 17-66 39-82 (359)
171 cd09013 BphC-JF8_N_like N-term 54.3 62 0.0013 21.5 7.8 57 22-102 62-118 (121)
172 TIGR00612 ispG_gcpE 1-hydroxy- 53.0 36 0.00077 28.6 5.2 45 10-67 37-81 (346)
173 cd02973 TRX_GRX_like Thioredox 52.6 22 0.00048 21.3 3.2 33 58-99 32-65 (67)
174 PRK06184 hypothetical protein; 50.3 45 0.00097 28.6 5.7 53 61-125 447-499 (502)
175 cd08364 FosX FosX, a fosfomyci 50.0 66 0.0014 22.0 5.7 19 85-103 105-123 (131)
176 cd08363 FosB FosB, a fosfomyci 49.9 82 0.0018 21.6 6.6 30 84-119 97-126 (131)
177 COG3322 Predicted periplasmic 49.4 26 0.00056 28.8 3.8 35 84-118 104-141 (295)
178 PRK11657 dsbG disulfide isomer 49.3 34 0.00073 27.1 4.4 42 66-118 208-249 (251)
179 cd08362 BphC5-RrK37_N_like N-t 48.6 75 0.0016 20.8 6.4 19 84-102 99-117 (120)
180 PRK08132 FAD-dependent oxidore 48.0 45 0.00098 29.0 5.4 46 62-119 498-543 (547)
181 cd07241 Glo_EDI_BRP_like_3 Thi 48.0 76 0.0016 20.7 6.7 14 85-98 110-123 (125)
182 cd07265 2_3_CTD_N N-terminal d 47.7 80 0.0017 20.9 7.8 17 85-101 102-118 (122)
183 cd07239 BphC5-RK37_C_like C-te 47.7 97 0.0021 21.8 7.3 58 22-101 59-116 (144)
184 PHA02762 hypothetical protein; 47.6 54 0.0012 20.2 4.1 20 85-104 29-48 (62)
185 cd07254 Glo_EDI_BRP_like_20 Th 47.6 79 0.0017 20.8 7.5 59 22-101 58-116 (120)
186 KOG2116|consensus 47.2 78 0.0017 29.1 6.7 60 7-74 561-623 (738)
187 PF12681 Glyoxalase_2: Glyoxal 47.2 58 0.0013 20.8 4.8 15 84-98 92-106 (108)
188 cd02987 Phd_like_Phd Phosducin 47.2 77 0.0017 23.6 5.9 50 61-118 120-172 (175)
189 cd02992 PDI_a_QSOX PDIa family 46.5 35 0.00077 23.2 3.7 24 65-94 66-89 (114)
190 PRK14894 glycyl-tRNA synthetas 45.8 1.3E+02 0.0027 27.0 7.7 89 18-119 432-535 (539)
191 TIGR02295 HpaD 3,4-dihydroxyph 45.7 1.4E+02 0.0031 23.2 7.6 55 22-101 60-114 (294)
192 cd07255 Glo_EDI_BRP_like_12 Th 45.4 87 0.0019 20.6 7.5 56 22-102 64-119 (125)
193 cd03026 AhpF_NTD_C TRX-GRX-lik 45.4 28 0.00061 22.9 3.0 33 58-99 45-78 (89)
194 cd07240 ED_TypeI_classII_N N-t 44.0 87 0.0019 20.2 7.6 18 85-102 97-114 (117)
195 PF08448 PAS_4: PAS fold; Int 43.5 24 0.00052 22.4 2.4 16 86-101 7-22 (110)
196 cd08357 Glo_EDI_BRP_like_18 Th 43.3 63 0.0014 21.2 4.6 17 84-100 107-123 (125)
197 PF15632 ATPgrasp_Ter: ATP-gra 42.5 1.7E+02 0.0037 24.4 7.7 102 9-121 79-195 (329)
198 cd03073 PDI_b'_ERp72_ERp57 PDI 42.5 1.1E+02 0.0024 21.0 7.5 90 17-119 11-109 (111)
199 PF00989 PAS: PAS fold; Inter 42.4 25 0.00055 22.4 2.4 17 85-101 12-28 (113)
200 TIGR03027 pepcterm_export puta 41.4 31 0.00067 25.3 2.9 36 85-120 20-56 (165)
201 PF06491 Disulph_isomer: Disul 40.7 95 0.0021 22.6 5.2 60 59-119 71-130 (136)
202 cd08360 MhqB_like_C C-terminal 39.2 1.2E+02 0.0027 20.6 7.9 61 21-103 61-121 (134)
203 PF11720 Inhibitor_I78: Peptid 38.9 42 0.00091 20.6 2.8 19 83-101 41-59 (60)
204 TIGR00339 sopT ATP sulphurylas 38.7 1.5E+02 0.0032 25.2 6.9 43 49-103 71-113 (383)
205 PF13426 PAS_9: PAS domain; PD 38.6 32 0.0007 21.4 2.4 16 86-101 3-18 (104)
206 smart00775 LNS2 LNS2 domain. T 37.8 65 0.0014 23.5 4.2 36 58-97 120-155 (157)
207 cd07256 HPCD_C_class_II C-term 36.6 1.6E+02 0.0034 21.0 7.5 19 85-103 106-124 (161)
208 PTZ00007 (NAP-L) nucleosome as 35.7 15 0.00032 30.8 0.5 16 126-141 180-195 (337)
209 cd02066 GRX_family Glutaredoxi 34.8 62 0.0014 18.8 3.2 16 17-32 19-34 (72)
210 cd07237 BphC1-RGP6_C_like C-te 34.8 1.6E+02 0.0036 20.8 7.0 61 21-103 72-132 (154)
211 TIGR01370 cysRS possible cyste 34.3 1E+02 0.0022 25.5 5.2 51 6-68 250-308 (315)
212 cd08348 BphC2-C3-RGP6_C_like T 33.8 1.5E+02 0.0032 19.9 7.9 19 85-103 103-121 (134)
213 PRK08671 methionine aminopepti 33.7 18 0.00038 29.2 0.6 29 58-97 260-288 (291)
214 cd02983 P5_C P5 family, C-term 33.6 93 0.002 22.0 4.3 50 66-124 68-118 (130)
215 PRK02048 4-hydroxy-3-methylbut 33.5 1E+02 0.0022 28.0 5.3 40 17-65 49-91 (611)
216 PF11453 DUF2950: Protein of u 32.9 49 0.0011 26.9 3.0 34 84-122 231-264 (271)
217 PRK00694 4-hydroxy-3-methylbut 32.9 1.1E+02 0.0023 27.7 5.3 40 17-65 53-95 (606)
218 PF02743 Cache_1: Cache domain 32.4 25 0.00055 22.1 1.1 16 85-100 54-69 (81)
219 PF10622 Ehbp: Energy-converti 32.3 21 0.00046 23.3 0.7 29 5-34 36-64 (78)
220 cd02430 PTH2 Peptidyl-tRNA hyd 32.3 1.7E+02 0.0037 20.5 5.4 41 17-66 43-83 (115)
221 KOG2507|consensus 32.3 91 0.002 27.2 4.6 23 83-105 77-99 (506)
222 cd09012 Glo_EDI_BRP_like_24 Th 32.3 1.5E+02 0.0033 19.6 8.1 16 85-100 107-122 (124)
223 TIGR01485 SPP_plant-cyano sucr 32.1 1.4E+02 0.003 23.0 5.4 36 5-42 22-57 (249)
224 PLN02734 glycyl-tRNA synthetas 32.0 2.5E+02 0.0054 25.9 7.6 87 22-122 572-662 (684)
225 PF14306 PUA_2: PUA-like domai 31.8 83 0.0018 23.3 3.9 41 49-101 73-113 (160)
226 cd08344 MhqB_like_N N-terminal 31.8 64 0.0014 21.2 3.1 19 85-103 92-110 (112)
227 PF00956 NAP: Nucleosome assem 31.7 16 0.00035 28.6 0.1 16 125-140 148-163 (244)
228 COG5030 APS2 Clathrin adaptor 31.3 1.3E+02 0.0027 22.3 4.6 52 85-136 3-54 (152)
229 cd02986 DLP Dim1 family, Dim1- 31.0 75 0.0016 22.4 3.4 36 61-103 52-87 (114)
230 TIGR03213 23dbph12diox 2,3-dih 31.0 2.6E+02 0.0056 21.8 8.0 19 84-102 100-118 (286)
231 PTZ00008 (NAP-S) nucleosome as 30.8 22 0.00048 27.1 0.7 14 127-140 112-125 (185)
232 PF02575 YbaB_DNA_bd: YbaB/Ebf 30.4 1.2E+02 0.0026 19.7 4.3 33 85-117 31-64 (93)
233 cd07244 FosA FosA, a Fosfomyci 30.3 1.1E+02 0.0024 20.3 4.2 19 85-103 93-111 (121)
234 PHA01548 hypothetical protein 30.1 72 0.0016 23.4 3.2 41 83-137 103-143 (167)
235 PRK10200 putative racemase; Pr 30.0 1.1E+02 0.0024 23.7 4.6 44 5-63 60-103 (230)
236 PF01323 DSBA: DSBA-like thior 29.9 1.4E+02 0.0031 21.5 5.0 38 66-118 156-193 (193)
237 PF09048 Cro: Cro; InterPro: 29.5 1.1E+02 0.0025 19.0 3.6 38 67-104 16-57 (59)
238 PF01981 PTH2: Peptidyl-tRNA h 29.1 1.9E+02 0.0042 19.8 5.4 41 17-66 44-84 (116)
239 cd02988 Phd_like_VIAF Phosduci 28.2 1.5E+02 0.0032 22.5 4.9 42 70-118 145-189 (192)
240 PF00462 Glutaredoxin: Glutare 28.2 87 0.0019 18.3 3.0 31 7-38 9-39 (60)
241 cd09014 BphC-JF8_C_like C-term 28.2 2.3E+02 0.005 20.4 7.0 59 22-102 69-127 (166)
242 PLN02925 4-hydroxy-3-methylbut 28.1 1.4E+02 0.0031 27.6 5.4 41 17-66 118-161 (733)
243 TIGR00099 Cof-subfamily Cof su 28.0 2.7E+02 0.006 21.2 8.2 27 16-42 26-52 (256)
244 cd03007 PDI_a_ERp29_N PDIa fam 28.0 1.3E+02 0.0029 21.0 4.3 47 66-119 67-114 (116)
245 COG0151 PurD Phosphoribosylami 27.9 1E+02 0.0022 26.7 4.3 53 5-65 72-127 (428)
246 PRK04322 peptidyl-tRNA hydrola 27.8 2E+02 0.0044 20.0 5.1 40 18-66 42-81 (113)
247 cd07262 Glo_EDI_BRP_like_19 Th 27.4 1.8E+02 0.004 19.0 7.7 16 84-99 106-121 (123)
248 cd07257 THT_oxygenase_C The C- 27.4 2.3E+02 0.0049 20.0 7.8 60 21-102 66-125 (153)
249 cd01427 HAD_like Haloacid deha 27.2 1.1E+02 0.0024 19.8 3.7 34 7-42 27-60 (139)
250 PRK00413 thrS threonyl-tRNA sy 27.1 4.1E+02 0.0088 23.7 8.1 90 23-126 542-637 (638)
251 PF13419 HAD_2: Haloacid dehal 27.0 2.1E+02 0.0046 19.5 5.9 33 8-42 81-113 (176)
252 TIGR03028 EpsE polysaccharide 26.7 98 0.0021 24.1 3.8 35 85-119 21-56 (239)
253 PRK06183 mhpA 3-(3-hydroxyphen 26.7 1.3E+02 0.0028 26.2 4.8 49 59-119 482-530 (538)
254 PF13344 Hydrolase_6: Haloacid 26.2 85 0.0018 21.0 2.9 37 9-47 19-55 (101)
255 COG0552 FtsY Signal recognitio 25.4 1.9E+02 0.0041 24.4 5.3 72 9-97 156-234 (340)
256 TIGR00389 glyS_dimeric glycyl- 25.1 3.4E+02 0.0074 24.4 7.1 59 58-119 486-549 (551)
257 cd01088 MetAP2 Methionine Amin 25.1 30 0.00065 27.9 0.6 13 85-97 276-288 (291)
258 COG5420 Uncharacterized conser 25.1 22 0.00047 22.7 -0.2 28 109-136 7-42 (71)
259 PRK05537 bifunctional sulfate 24.5 3.1E+02 0.0066 24.5 6.8 38 58-103 78-115 (568)
260 cd09011 Glo_EDI_BRP_like_23 Th 24.5 94 0.002 20.5 2.9 17 84-100 101-117 (120)
261 cd07267 THT_Oxygenase_N N-term 24.3 2.1E+02 0.0046 18.6 7.0 20 84-103 92-111 (113)
262 TIGR00067 glut_race glutamate 24.2 1.9E+02 0.0041 22.8 5.0 42 8-63 48-90 (251)
263 KOG2741|consensus 24.1 2.1E+02 0.0045 24.2 5.3 39 2-42 14-52 (351)
264 PRK10877 protein disulfide iso 23.9 1.4E+02 0.0031 23.2 4.2 43 64-121 189-231 (232)
265 PRK06724 hypothetical protein; 23.8 2.5E+02 0.0054 19.3 8.1 19 84-102 105-123 (128)
266 cd07235 MRD Mitomycin C resist 23.6 2.2E+02 0.0048 18.6 7.2 17 84-100 105-121 (122)
267 KOG2583|consensus 23.5 2.6E+02 0.0056 24.3 5.8 36 2-42 185-220 (429)
268 PF13462 Thioredoxin_4: Thiore 23.5 2.2E+02 0.0047 19.7 4.8 27 83-119 136-162 (162)
269 PLN02367 lactoylglutathione ly 22.9 3.9E+02 0.0084 21.2 7.7 53 21-100 168-220 (233)
270 cd07242 Glo_EDI_BRP_like_6 Thi 22.8 2.3E+02 0.005 18.6 7.8 58 22-99 68-125 (128)
271 PRK15175 Vi polysaccharide exp 22.5 94 0.002 26.1 3.1 34 87-120 104-138 (355)
272 cd02407 PTH2_family Peptidyl-t 22.1 2.8E+02 0.006 19.3 5.0 40 17-65 43-82 (115)
273 cd07243 2_3_CTD_C C-terminal d 22.1 2.8E+02 0.0061 19.3 6.4 18 84-101 107-124 (143)
274 PRK13738 conjugal transfer pil 22.0 3.9E+02 0.0084 20.8 9.0 40 58-103 164-203 (209)
275 cd02979 PHOX_C FAD-dependent P 21.8 3.3E+02 0.0072 20.0 5.7 48 61-118 112-165 (167)
276 PRK14317 glmM phosphoglucosami 21.7 4.1E+02 0.0089 22.7 6.9 7 90-96 264-270 (465)
277 cd07258 PpCmtC_C C-terminal do 21.5 3E+02 0.0064 19.3 7.7 59 22-102 56-114 (141)
278 cd07238 Glo_EDI_BRP_like_5 Thi 21.3 2.4E+02 0.0051 18.1 5.8 16 85-100 94-109 (112)
279 COG0526 TrxA Thiol-disulfide i 21.2 88 0.0019 19.2 2.2 27 2-31 47-73 (127)
280 TIGR02463 MPGP_rel mannosyl-3- 21.1 2.4E+02 0.0053 20.9 4.9 34 7-42 19-52 (221)
281 TIGR00501 met_pdase_II methion 21.1 38 0.00082 27.4 0.4 13 85-97 280-292 (295)
282 TIGR01492 CPW_WPC Plasmodium f 20.8 44 0.00095 20.7 0.6 15 127-141 7-21 (62)
283 PF00585 Thr_dehydrat_C: C-ter 20.2 1E+02 0.0022 20.4 2.3 27 20-46 48-74 (91)
No 1
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-40 Score=252.15 Aligned_cols=138 Identities=30% Similarity=0.528 Sum_probs=132.5
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|++|+-+|+++| ++|+++|++|||||+|+.++|.+|.+.+++.. |+.++ +|||++|.++++++.||+..++.
T Consensus 48 VCpTEi~af~~~y--~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~--gi~~i---~~PmiaD~~~~vs~~ygvl~~~~ 120 (194)
T COG0450 48 VCPTEIIAFAKRY--EEFQKRGVEVIGVSTDSVFSHKAWKATIREAG--GIGKI---KFPMIADPKGEIARAYGVLHPEE 120 (194)
T ss_pred cCcchHHHHHhhh--HHHHHcCCEEEEEecCcHHHHHHHHhcHHhcC--Cccce---ecceEEcCchhHHHHcCCcccCC
Confidence 4999999999999 79999999999999999999999999988776 88778 99999999999999999999888
Q ss_pred CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccCC
Q psy17183 81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVAL 145 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~~ 145 (145)
|.+.|++|||||+|+|++..+++.++||+.+|+++.|++||++++|+++||+||++|+++|+|++
T Consensus 121 g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq~~~~hg~vcPanW~~G~~~i~p~~ 185 (194)
T COG0450 121 GLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQFVAKHGEVCPANWKPGDKTIKPSP 185 (194)
T ss_pred CcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHHHHHHhCCCccCCCCCCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999874
No 2
>PRK15000 peroxidase; Provisional
Probab=100.00 E-value=1.5e-34 Score=222.37 Aligned_cols=137 Identities=27% Similarity=0.469 Sum_probs=125.3
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
-|+.|++.|++++ ++|+++|++|||||.|+++++++|.+...+.. |+..+ +||+++|+++++++.||+..+..
T Consensus 49 vC~~El~~l~~~~--~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~--g~~~i---~fpllsD~~~~ia~~ygv~~~~~ 121 (200)
T PRK15000 49 VCPSELIAFDKRY--EEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKG--GIGPV---KYAMVADVKREIQKAYGIEHPDE 121 (200)
T ss_pred CCHHHHHHHHHHH--HHHHHCCCEEEEEECCCHHHHHHHHhhHHHhC--Ccccc---CceEEECCCcHHHHHcCCccCCC
Confidence 3999999999999 69999999999999999999999987543433 44347 89999999999999999987667
Q ss_pred CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183 81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA 144 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~ 144 (145)
|.+.|++||||++|+|++.++++.+.+|+++|++++|+++|++++|+++||+||++|+++|+|.
T Consensus 122 g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~~~~~~~~~~p~~w~~g~~~~~~~ 185 (200)
T PRK15000 122 GVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFHEEHGDVCPAQWEKGKEGMNAS 185 (200)
T ss_pred CcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhHHhcCCCcCCCCCCCCceeccC
Confidence 8889999999999999999999999999999999999999999999999999999999999985
No 3
>KOG0852|consensus
Probab=100.00 E-value=1.1e-34 Score=216.38 Aligned_cols=137 Identities=32% Similarity=0.547 Sum_probs=131.5
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|-.|.-+|.+.+ ++|++.|.+|||+|+|++++|.+|+..-++.+ |++.+ .+|||+|.++++++.||+..++.
T Consensus 48 VcPteIiafSd~~--~eF~~~n~eVig~S~DS~fshlAW~ntprk~g--Glg~~---~iPllsD~~~~IsrdyGvL~~~~ 120 (196)
T KOG0852|consen 48 VCPTEIIAFSDRA--PEFRKLNTEVLGISTDSVFSHLAWINTPRKQG--GLGPL---NIPLLSDLNHEISRDYGVLKEDE 120 (196)
T ss_pred ECchhhhhhhhhH--HHHHhcCCeEEEEeccchhhhhhHhcCchhhC--CcCcc---ccceeeccchhhHHhcCceecCC
Confidence 3889999999999 69999999999999999999999999888887 88778 89999999999999999999999
Q ss_pred CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183 81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA 144 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~ 144 (145)
|.+.|+.||||++|.+|...+++.++||+++|+++.|+++|++++|+++||++|++|+++|+|.
T Consensus 121 G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ~td~~geVcPagW~pgs~tikp~ 184 (196)
T KOG0852|consen 121 GIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQFTDEHGEVCPAGWKPGSDTIKPD 184 (196)
T ss_pred CcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHhhhhccCccccCCCCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 4
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=100.00 E-value=1.4e-33 Score=215.25 Aligned_cols=134 Identities=25% Similarity=0.456 Sum_probs=121.8
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|+.|++.|++++ ++|+++|++|||||.|+++.+++|++..+.. .++ +||+|+|++++++++||+..+..
T Consensus 46 ~C~~el~~l~~~~--~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~-----~~l---~fpllsD~~~~ia~~ygv~~~~~ 115 (187)
T PRK10382 46 VCPTELGDVADHY--EELQKLGVDVYSVSTDTHFTHKAWHSSSETI-----AKI---KYAMIGDPTGALTRNFDNMREDE 115 (187)
T ss_pred cCHHHHHHHHHHH--HHHHhCCCEEEEEeCCCHHHHHHHHHhhccc-----cCC---ceeEEEcCchHHHHHcCCCcccC
Confidence 4999999999999 6999999999999999999999999863221 128 99999999999999999986555
Q ss_pred CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccC-CcccCCCCCCCCCccccC
Q psy17183 81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDST-DTQCPVNWTTGQPSVKVA 144 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~-~~~~p~~w~~~~~~~~~~ 144 (145)
|.+.|++||||++|+|++.++.+...+++.+|+++.|+++|++++| ++.||+||++|+++|.|.
T Consensus 116 g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~~~~~~g~~~p~~w~~~~~~~~~~ 180 (187)
T PRK10382 116 GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAPS 180 (187)
T ss_pred CceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhhHhhcCCeEeCCCCCcCCcceecC
Confidence 7778999999999999999999888899999999999999999999 699999999999999875
No 5
>PRK13191 putative peroxiredoxin; Provisional
Probab=100.00 E-value=2e-33 Score=218.39 Aligned_cols=136 Identities=27% Similarity=0.471 Sum_probs=122.5
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|+.|++.|++++ ++|+++|++|||||+|+.++|++|.+.+++.. +. .+ +||+++|++++++++||+.....
T Consensus 48 vC~tEl~~l~~~~--~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~--~~-~i---~fPllsD~~~~ia~~ygv~~~~~ 119 (215)
T PRK13191 48 VCTTEFYSFAKKY--EEFKKLNTELIGLSVDSNISHIEWVMWIEKNL--KV-EV---PFPIIADPMGNVAKRLGMIHAES 119 (215)
T ss_pred cCHHHHHHHHHHH--HHHHHCCCEEEEEECCCHHHHHHHHhhHHHhc--CC-CC---ceEEEECCchHHHHHcCCccccc
Confidence 4999999999999 79999999999999999999999988765422 22 27 89999999999999999976432
Q ss_pred -CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCC----CCCccccC
Q psy17183 81 -GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTT----GQPSVKVA 144 (145)
Q Consensus 81 -g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~----~~~~~~~~ 144 (145)
+.+.|++||||++|+|++.++++.+.+|+++|+|+.|++||.+++|+++||+||++ |+++|+|+
T Consensus 120 ~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~~~~~~~~P~~w~~~~~~g~~~~~~~ 188 (215)
T PRK13191 120 STATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQLVDKAGVVTPANWPNNELIGDKVINPA 188 (215)
T ss_pred CCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCCCCCCCCCceecCC
Confidence 55789999999999999999999999999999999999999999999999999997 99999975
No 6
>PRK13190 putative peroxiredoxin; Provisional
Probab=100.00 E-value=5.5e-33 Score=213.77 Aligned_cols=136 Identities=24% Similarity=0.375 Sum_probs=123.2
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|+.|++.|++++ ++|+++|++|||||.|+.+++++|++.+.+.. |+ .+ +||+++|++++++++||+.....
T Consensus 42 ~C~~El~~l~~~~--~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~--g~-~~---~fPll~D~~~~ia~~ygv~~~~~ 113 (202)
T PRK13190 42 VCTTEFIAFSRRY--EDFKKLGVELVGLSVDSIYSHIAWLRDIEERF--GI-KI---PFPVIADIDKELAREYNLIDENS 113 (202)
T ss_pred CCHHHHHHHHHHH--HHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhc--CC-Cc---eEEEEECCChHHHHHcCCccccC
Confidence 4999999999999 69999999999999999999999987654332 32 27 89999999999999999976556
Q ss_pred CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183 81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA 144 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~ 144 (145)
|.+.|++||||++|+|++...++...+|+.+|+++.|+++|.+++|+++||+||++|+++|+|+
T Consensus 114 g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~~~~~~~~p~~w~~g~~~~~~~ 177 (202)
T PRK13190 114 GATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNWKRKVATPANWQPGQEGIVPA 177 (202)
T ss_pred CcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhcCCCcCCCCCcCCceecCC
Confidence 7678999999999999999999988899999999999999999999999999999999999964
No 7
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=100.00 E-value=5.9e-33 Score=221.09 Aligned_cols=136 Identities=29% Similarity=0.476 Sum_probs=121.9
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|+.|++.|++++ ++|+++|++|+|||.|+++++++|++...+.+ |...+ +||+++|++++++++||+... .
T Consensus 113 vCt~El~~l~~~~--~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~--g~~~l---~fPlLsD~~~~iakayGv~~~-~ 184 (261)
T PTZ00137 113 VCPSELLGFSERL--KEFEERGVKVLGVSVDSPFSHKAWKELDVRQG--GVSPL---KFPLFSDISREVSKSFGLLRD-E 184 (261)
T ss_pred CCHHHHHHHHHHH--HHHHHCCCEEEEEECCCHHHHHHHHhhhhhhc--cccCc---ceEEEEcCChHHHHHcCCCCc-C
Confidence 3999999999999 69999999999999999999999987422221 22238 899999999999999999753 4
Q ss_pred CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183 81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA 144 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~ 144 (145)
|.+.|++||||++|+|++.++++.+.+|+++|++++|++||++++|+++||+||++|+++|+|.
T Consensus 185 g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~~~~~g~~cPanW~~g~~~~~~~ 248 (261)
T PTZ00137 185 GFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFAEKTGNVCPVNWKQGDQAMKPD 248 (261)
T ss_pred CceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhchhhhcCCCcCCCCCcCCceecCC
Confidence 7789999999999999999999989999999999999999999999999999999999999974
No 8
>PRK13189 peroxiredoxin; Provisional
Probab=100.00 E-value=2.4e-32 Score=213.23 Aligned_cols=136 Identities=25% Similarity=0.402 Sum_probs=122.3
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|+.|++.|++++ ++|+++|++|||||+|+.+++++|.+.+.+.. |. .+ +||+++|.+++++++||+.....
T Consensus 50 vC~tEl~~l~~~~--~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~--g~-~i---~fPllsD~~~~ia~~ygv~~~~~ 121 (222)
T PRK13189 50 VCTTEFVAFQKRY--DEFRELNTELIGLSIDQVFSHIKWVEWIKEKL--GV-EI---EFPIIADDRGEIAKKLGMISPGK 121 (222)
T ss_pred CCHHHHHHHHHHH--HHHHHcCCEEEEEECCCHHHHHHHHHhHHHhc--Cc-Cc---ceeEEEcCccHHHHHhCCCcccc
Confidence 4999999999999 69999999999999999999999998765432 22 27 89999999999999999975432
Q ss_pred -CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCC----CccccC
Q psy17183 81 -GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQ----PSVKVA 144 (145)
Q Consensus 81 -g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~----~~~~~~ 144 (145)
+.+.|++||||++|+|++.++++.+.+|+.+|+++.|+++|..++|+++||+||++|+ ++|+|+
T Consensus 122 ~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~~~~~~~~p~~w~~g~~~~~~~~~~~ 190 (222)
T PRK13189 122 GTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQTSDEKGVATPANWPPNDLIKDKVIVPP 190 (222)
T ss_pred CCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhHhhcCcCcCCCCCCCCCCCCceeeCC
Confidence 3478999999999999999999998999999999999999999999999999999999 999975
No 9
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=100.00 E-value=3.3e-32 Score=209.42 Aligned_cols=136 Identities=26% Similarity=0.406 Sum_probs=122.4
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC-
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS- 79 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~- 79 (145)
.|+.|++.|++++ ++|+++|++|||||.|+.+++++|.+.+++.. + ..+ +||+++|++++++++||+....
T Consensus 40 ~C~~el~~l~~~~--~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~--~-~~~---~fpil~D~~~~ia~~yg~~~~~~ 111 (203)
T cd03016 40 VCTTELGAFAKLA--PEFKKRNVKLIGLSVDSVESHIKWIEDIEEYT--G-VEI---PFPIIADPDREVAKLLGMIDPDA 111 (203)
T ss_pred cCHHHHHHHHHHH--HHHHHcCCEEEEEECCCHHHHHHHHhhHHHhc--C-CCC---ceeEEECchHHHHHHcCCccccC
Confidence 4999999999999 69999999999999999999999998776542 1 128 9999999999999999998643
Q ss_pred -CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183 80 -AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA 144 (145)
Q Consensus 80 -~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~ 144 (145)
.+.+.|++||||++|+|++.++++.+.+|+.+|++++|+++|..++++.+||+||.+|+++|+|+
T Consensus 112 ~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~~~~~~~~~p~~w~~g~~~~~~~ 177 (203)
T cd03016 112 GSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQLTDKHKVATPANWKPGDDVIVPP 177 (203)
T ss_pred CCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhHhhcCcCcCCCCCCCCceecCC
Confidence 23467999999999999999999988899999999999999999999999999999999999964
No 10
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.98 E-value=8e-32 Score=209.43 Aligned_cols=136 Identities=23% Similarity=0.394 Sum_probs=121.5
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
-||.|++.|++++ ++|+++|++|||||.|+.+++++|.+.+++.. +. ++ +||+++|.+++++++||+..+..
T Consensus 43 vCt~El~~l~~~~--~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~--~~-~i---~fPil~D~~~~va~~yg~~~~~~ 114 (215)
T PRK13599 43 VCTTEFVEFARKA--NDFKELNTELIGLSVDQVFSHIKWVEWIKDNT--NI-AI---PFPVIADDLGKVSNQLGMIHPGK 114 (215)
T ss_pred cCHHHHHHHHHHH--HHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhc--CC-CC---ceeEEECCCchHHHHcCCCccCC
Confidence 3999999999999 79999999999999999999999988765431 11 28 89999999999999999976543
Q ss_pred CC-cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCC----CCCccccC
Q psy17183 81 GH-SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTT----GQPSVKVA 144 (145)
Q Consensus 81 g~-~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~----~~~~~~~~ 144 (145)
|. +.|++||||++|+|+++++++...+|+.+|++++|++||.+++++.+||+||.+ |+++|+|+
T Consensus 115 ~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~~~~~~~~p~~w~~~~~~g~~~~~~~ 183 (215)
T PRK13599 115 GTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTADQYGVALPEKWPNNYLIKDHVIVPP 183 (215)
T ss_pred CCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCCCCCCCCCcEEEcC
Confidence 32 689999999999999999988888999999999999999999999999999999 99999964
No 11
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.97 E-value=5e-31 Score=202.08 Aligned_cols=137 Identities=34% Similarity=0.609 Sum_probs=122.4
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
-|+.|++.|++++ ++|+++|++|||||.|+.+++.+|....+..+ |...+ +||+++|+++++++.||+.....
T Consensus 51 ~C~~e~~~l~~~~--~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~--~~~~~---~fpll~D~~~~ia~~ygv~~~~~ 123 (199)
T PTZ00253 51 VCPTEIIQFSDSV--KRFNELNCEVLACSMDSEYAHLQWTLQERKKG--GLGTM---AIPMLADKTKSIARSYGVLEEEQ 123 (199)
T ss_pred cCHHHHHHHHHHH--HHHHHcCCEEEEEeCCCHHHHHHHHhChHhhC--Ccccc---ccceEECcHhHHHHHcCCcccCC
Confidence 3999999999999 69999999999999999999999965432222 22237 89999999999999999987656
Q ss_pred CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183 81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA 144 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~ 144 (145)
|.+.|++||||++|+|++.++++.+.+|+.+|+++.|+++|..++++++||+||++|+++|+|.
T Consensus 124 g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~~~~~~~~~cp~~w~~g~~~~~~~ 187 (199)
T PTZ00253 124 GVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEKHGEVCPANWKKGDPTMKPD 187 (199)
T ss_pred CceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhhhHHhcCCEeCCCCCcCCccccCC
Confidence 7778999999999999999999888999999999999999999999999999999999999974
No 12
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.97 E-value=2.1e-29 Score=191.51 Aligned_cols=135 Identities=27% Similarity=0.512 Sum_probs=121.1
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|+.|++.|++++ ++|++.|++||+||.|+++.+++|++..+... .+ +||+++|+++++++.||+.....
T Consensus 46 ~C~~el~~l~~~~--~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~-----~l---~fpllsD~~~~~a~~~gv~~~~~ 115 (187)
T TIGR03137 46 VCPTELEDLADKY--AELKKLGVEVYSVSTDTHFVHKAWHDTSEAIG-----KI---TYPMLGDPTGVLTRNFGVLIEEA 115 (187)
T ss_pred cCHHHHHHHHHHH--HHHHhcCCcEEEEeCCCHHHHHHHHhhhhhcc-----Cc---ceeEEECCccHHHHHhCCcccCC
Confidence 4999999999999 69999999999999999999999988632221 28 89999999999999999986555
Q ss_pred CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccC-CcccCCCCCCCCCccccCC
Q psy17183 81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDST-DTQCPVNWTTGQPSVKVAL 145 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~-~~~~p~~w~~~~~~~~~~~ 145 (145)
|...|++||||++|+|++.+++..+.+++.+++++.|+++|++++| ++.||+||.+|.+++.|.+
T Consensus 116 g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (187)
T TIGR03137 116 GLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQYVAAHPGEVCPAKWKEGAETLKPSL 181 (187)
T ss_pred CceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhcCCeeeCCCCCcCCccccCCh
Confidence 6678999999999999999998877788999999999999999999 7999999999999998764
No 13
>KOG0854|consensus
Probab=99.96 E-value=3.8e-28 Score=181.95 Aligned_cols=139 Identities=24% Similarity=0.387 Sum_probs=124.2
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC-
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS- 79 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~- 79 (145)
.||.|+..++++. .+|..+|+..||+|+|+.++|+.|.+.|..++..--..+ +||++.|++.++|-.|||.+++
T Consensus 47 VCTTElgr~Akl~--pEF~KRnvKlialS~d~vesH~~Wi~DIks~~~~~~~~~---~yPIIaD~~rela~~l~MlD~~e 121 (224)
T KOG0854|consen 47 VCTTELGRFAKLA--PEFDKRNVKLIALSVDDVESHKDWIKDIKSYAKVKNHSV---PYPIIADPNRELAFLLNMLDPEE 121 (224)
T ss_pred chhHHHHHHHhhC--hhhhhcCceEEEeehhhHHHHHHHHHHHHHHHhccCCCC---CCCeecCCchhhhhhhcccCHhH
Confidence 4999999999998 799999999999999999999999999855431110117 8999999999999999998754
Q ss_pred -----CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCCCCccccC
Q psy17183 80 -----AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVKVA 144 (145)
Q Consensus 80 -----~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~~~~~~~~ 144 (145)
-|.+.|+.||||++.+|+.++.++.++||+++|+|++|.+||.++++..++|+||++|+++++++
T Consensus 122 ~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiLRvidsLqlt~~k~VaTP~nWkpg~~vmilP 191 (224)
T KOG0854|consen 122 KKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEILRVIDSLQLTDKKGVATPVNWKPGDKVMILP 191 (224)
T ss_pred cCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHHHHHHHHHHhhhcccccccccccCCCCceEEcC
Confidence 25689999999999999999999999999999999999999999999999999999999999853
No 14
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.95 E-value=1.7e-27 Score=178.30 Aligned_cols=130 Identities=33% Similarity=0.561 Sum_probs=114.2
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|+.|++.|++++ ++|.+.|++|++||.|+.+.+.+|.+...+.. +...+ +||+++|..++++++||+.....
T Consensus 44 ~C~~~l~~l~~~~--~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~--~~~~~---~f~~l~D~~~~~~~~~gv~~~~~ 116 (173)
T cd03015 44 VCPTEIIAFSDRY--EEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEG--GLGKI---NFPLLADPKKKISRDYGVLDEEE 116 (173)
T ss_pred cCHHHHHHHHHHH--HHHHHCCCEEEEEecCCHHHHHHHHHhhhhhC--CccCc---ceeEEECCchhHHHHhCCccccC
Confidence 4999999999999 69999999999999999888888987643210 11127 89999999999999999986655
Q ss_pred CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCC
Q psy17183 81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~ 137 (145)
|.+.|++||||++|+|++.+++..+.+++.+++++.|+.++...+|+++||+||++|
T Consensus 117 ~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~ 173 (173)
T cd03015 117 GVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVEEHGEVCPANWKPG 173 (173)
T ss_pred CceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCCCC
Confidence 667899999999999999999887778899999999999999999999999999987
No 15
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.7e-25 Score=166.04 Aligned_cols=105 Identities=24% Similarity=0.352 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC-
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA- 80 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~- 80 (145)
||.|+|+|++++ ++|+..|++|||||+|+++++++|+++ ++ + +||||||.+++|+++||+.....
T Consensus 46 CT~Ea~~Frd~~--~ef~~~~a~V~GIS~Ds~~~~~~F~~k---~~------L---~f~LLSD~~~~v~~~ygv~~~k~~ 111 (157)
T COG1225 46 CTTEACDFRDLL--EEFEKLGAVVLGISPDSPKSHKKFAEK---HG------L---TFPLLSDEDGEVAEAYGVWGEKKM 111 (157)
T ss_pred chHHHHHHHHHH--HHHHhCCCEEEEEeCCCHHHHHHHHHH---hC------C---CceeeECCcHHHHHHhCccccccc
Confidence 999999999999 699999999999999999999999997 87 9 99999999999999999987532
Q ss_pred -----CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 81 -----GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 81 -----g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
..+.|+|||||++|+|++.| .......|.+++++.|+++.
T Consensus 112 ~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~~l~~l~ 156 (157)
T COG1225 112 YGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLAALKKLA 156 (157)
T ss_pred CccccccccceEEEECCCCeEEEEe-cCCCCcccHHHHHHHHHHhc
Confidence 13799999999999999999 34455668999999998875
No 16
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.79 E-value=1.3e-18 Score=128.87 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=81.3
Q ss_pred ChhHH-HHHHHHHhhhhhhhcCCc-EEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183 1 MDTKI-ACDVLKLVRKEILIVSPF-QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS 78 (145)
Q Consensus 1 ~~t~e-~~~~~~~~~~~~f~~~gv-~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~ 78 (145)
.||.| ++.|++.+ ++|+++|+ .|+|||.|+++++++|+++ ++ +. . +||+|||++++++++||+...
T Consensus 44 ~Ct~e~~~~~~~~~--~~f~~~g~~~V~~iS~D~~~~~~~~~~~---~~---~~-~---~f~lLsD~~~~~~~~ygv~~~ 111 (155)
T cd03013 44 TCSAQHLPGYVENA--DELKAKGVDEVICVSVNDPFVMKAWGKA---LG---AK-D---KIRFLADGNGEFTKALGLTLD 111 (155)
T ss_pred CCchhHHHHHHHhH--HHHHHCCCCEEEEEECCCHHHHHHHHHh---hC---CC-C---cEEEEECCCHHHHHHcCCCcc
Confidence 49999 99999999 79999999 6999999999999999997 43 10 3 699999999999999999765
Q ss_pred CC--CC---cceEEEEECCCCcEEEEEeecCCCCC
Q psy17183 79 SA--GH---SLRAYYIIDKRGYLRSMNVSDIQVGR 108 (145)
Q Consensus 79 ~~--g~---~~p~tfIID~dG~I~~~~~~~~~~~~ 108 (145)
.. |+ +.|++|||| +|+|+++++...+.+.
T Consensus 112 ~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~~~~ 145 (155)
T cd03013 112 LSAAGGGIRSKRYALIVD-DGKVKYLFVEEDPGDV 145 (155)
T ss_pred ccccCCcceeeeEEEEEC-CCEEEEEEEecCCCCc
Confidence 42 33 689999999 7999999998876443
No 17
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.79 E-value=2.7e-18 Score=128.27 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCC-ccEEec-CchHHHHHhCCCccC
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKI-VPLLSD-STHAISKTYGCYLSS 79 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-fpllsD-~~~~va~~yg~~~~~ 79 (145)
|+.|+|.|++++ ++|. |++|+|||.|+++++++|+++ ++ + + ||+++| ..+++++.||+....
T Consensus 60 C~~e~~~l~~~~--~~~~--~~~vv~vs~D~~~~~~~f~~~---~~------~---~~~~~lsD~~~~~~~~~~gv~~~~ 123 (167)
T PRK00522 60 CATSVRKFNQEA--AELD--NTVVLCISADLPFAQKRFCGA---EG------L---ENVITLSDFRDHSFGKAYGVAIAE 123 (167)
T ss_pred cHHHHHHHHHHH--HHcC--CcEEEEEeCCCHHHHHHHHHh---CC------C---CCceEeecCCccHHHHHhCCeecc
Confidence 999999999999 5773 899999999999999999986 65 6 5 799999 466999999997532
Q ss_pred ---CCCcceEEEEECCCCcEEEEEeecC-CCCCCHHHHHHHHHh
Q psy17183 80 ---AGHSLRAYYIIDKRGYLRSMNVSDI-QVGRNLKEILRQVEA 119 (145)
Q Consensus 80 ---~g~~~p~tfIID~dG~I~~~~~~~~-~~~~~~~ell~~i~~ 119 (145)
.|...|++||||++|+|++.++++. ....+.++++++|++
T Consensus 124 ~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~~ 167 (167)
T PRK00522 124 GPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALKA 167 (167)
T ss_pred cccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhhC
Confidence 5778899999999999999998653 445689999988763
No 18
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.76 E-value=1.7e-17 Score=120.04 Aligned_cols=105 Identities=30% Similarity=0.449 Sum_probs=91.5
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc--hHHHHHhCCCcc
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST--HAISKTYGCYLS 78 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~--~~va~~yg~~~~ 78 (145)
.|+.+++.|++++ ++|++.|+++|+||.|+++.+++|+++ ++ + +||+++|.+ +++++.||+...
T Consensus 43 ~C~~~~~~l~~~~--~~~~~~~v~vi~vs~d~~~~~~~~~~~---~~------~---~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 43 VCTKELCALRDSL--ELFEAAGAEVLGISVDSPFSLRAWAEE---NG------L---TFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred cHHHHHHHHHHHH--HHHHhCCCEEEEecCCCHHHHHHHHHh---cC------C---CceEecCCCchhHHHHHhCCccc
Confidence 3999999999999 699999999999999999999999886 66 8 999999988 999999999854
Q ss_pred CCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 79 SAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 79 ~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
..|...|++||||++|+|++.+.++....++..++.+.|++
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALDA 149 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhhC
Confidence 33556789999999999999999987666777888877753
No 19
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.73 E-value=6.4e-17 Score=116.76 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc-hHHHHHhCCCccC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST-HAISKTYGCYLSS 79 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~-~~va~~yg~~~~~ 79 (145)
.|+.|++.|++++ ++|+ |+.||+||.|+.+++++|.++ ++ .. +||+++|.. ++++++||+..+.
T Consensus 41 ~C~~e~~~l~~~~--~~~~--~~~vi~Is~d~~~~~~~~~~~---~~-----~~---~~~~l~D~~~~~~~~~~gv~~~~ 105 (143)
T cd03014 41 VCATQTKRFNKEA--AKLD--NTVVLTISADLPFAQKRWCGA---EG-----VD---NVTTLSDFRDHSFGKAYGVLIKD 105 (143)
T ss_pred cCHHHHHHHHHHH--HhcC--CCEEEEEECCCHHHHHHHHHh---cC-----CC---CceEeecCcccHHHHHhCCeecc
Confidence 3999999999999 5674 899999999999999999886 43 13 699999996 9999999998766
Q ss_pred CCCcceEEEEECCCCcEEEEEeecCC-CCCCHHHHHH
Q psy17183 80 AGHSLRAYYIIDKRGYLRSMNVSDIQ-VGRNLKEILR 115 (145)
Q Consensus 80 ~g~~~p~tfIID~dG~I~~~~~~~~~-~~~~~~ell~ 115 (145)
.|.+.|++||||++|+|++.+++... ..++++++++
T Consensus 106 ~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~ 142 (143)
T cd03014 106 LGLLARAVFVIDENGKVIYVELVPEITDEPDYEAALA 142 (143)
T ss_pred CCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence 67778999999999999999997643 3456777664
No 20
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.71 E-value=1.4e-16 Score=113.98 Aligned_cols=99 Identities=27% Similarity=0.277 Sum_probs=85.7
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC-
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS- 79 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~- 79 (145)
.|+.+++.|++++ ++|++.|++||+||.|+++..++|+++ ++ + +||+++|.++++++.||+....
T Consensus 38 ~C~~~~~~l~~~~--~~~~~~~~~vv~is~d~~~~~~~~~~~---~~------~---~~~~l~D~~~~~~~~~gv~~~~~ 103 (140)
T cd03017 38 GCTKEACDFRDLY--EEFKALGAVVIGVSPDSVESHAKFAEK---YG------L---PFPLLSDPDGKLAKAYGVWGEKK 103 (140)
T ss_pred chHHHHHHHHHHH--HHHHHCCCEEEEEcCCCHHHHHHHHHH---hC------C---CceEEECCccHHHHHhCCccccc
Confidence 4999999999999 689999999999999999999999886 66 8 9999999999999999987531
Q ss_pred --CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHH
Q psy17183 80 --AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEIL 114 (145)
Q Consensus 80 --~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell 114 (145)
.+...|++||||++|+|++.+.|.. .+++++|++
T Consensus 104 ~~~~~~~p~~~lid~~G~v~~~~~g~~-~~~~~~~~~ 139 (140)
T cd03017 104 KKYMGIERSTFLIDPDGKIVKVWRKVK-PKGHAEEVL 139 (140)
T ss_pred cccCCcceeEEEECCCCEEEEEEecCC-ccchHHHHh
Confidence 2234599999999999999998876 567777765
No 21
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.69 E-value=3.8e-16 Score=114.26 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|+.+++.|++++ ++|++.|+++|+||.|+.+.+++|+++ ++ + +||+++|.++.++++||+.....
T Consensus 45 ~C~~~~~~l~~~~--~~~~~~~v~vi~Is~d~~~~~~~~~~~---~~------~---~~~~l~D~~~~~~~~~gv~~~~~ 110 (154)
T PRK09437 45 GCTVQACGLRDNM--DELKKAGVVVLGISTDKPEKLSRFAEK---EL------L---NFTLLSDEDHQVAEQFGVWGEKK 110 (154)
T ss_pred chHHHHHHHHHHH--HHHHHCCCEEEEEcCCCHHHHHHHHHH---hC------C---CCeEEECCCchHHHHhCCCcccc
Confidence 3999999999999 689999999999999999999999886 66 8 99999999999999999864211
Q ss_pred --C----CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183 81 --G----HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118 (145)
Q Consensus 81 --g----~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~ 118 (145)
| ...|++||||++|+|++.+.+..+ .++.++++++++
T Consensus 111 ~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~-~~~~~~~~~~~~ 153 (154)
T PRK09437 111 FMGKTYDGIHRISFLIDADGKIEHVFDKFKT-SNHHDVVLDYLK 153 (154)
T ss_pred cccccccCcceEEEEECCCCEEEEEEcCCCc-chhHHHHHHHHh
Confidence 1 124889999999999999987643 456777877764
No 22
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.69 E-value=2.9e-16 Score=112.97 Aligned_cols=88 Identities=19% Similarity=0.196 Sum_probs=77.3
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC-
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS- 79 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~- 79 (145)
.|+.|++.|++++ ++|+..|++||+||.|+.+.+.+|.+. ++ + +||+++|++++++++||+....
T Consensus 38 ~C~~~~~~l~~~~--~~~~~~~v~vv~V~~~~~~~~~~~~~~---~~------~---~~p~~~D~~~~~~~~~g~~~~~~ 103 (149)
T cd02970 38 FCREYLRALSKLL--PELDALGVELVAVGPESPEKLEAFDKG---KF------L---PFPVYADPDRKLYRALGLVRSLP 103 (149)
T ss_pred hHHHHHHHHHHHH--HHHHhcCeEEEEEeCCCHHHHHHHHHh---cC------C---CCeEEECCchhHHHHcCceecCc
Confidence 4999999999999 699999999999999999888888875 66 8 9999999999999999996322
Q ss_pred ----------------------CCCcceEEEEECCCCcEEEEEee
Q psy17183 80 ----------------------AGHSLRAYYIIDKRGYLRSMNVS 102 (145)
Q Consensus 80 ----------------------~g~~~p~tfIID~dG~I~~~~~~ 102 (145)
.+...|++||||++|+|++.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 104 WSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 12468999999999999999875
No 23
>KOG0855|consensus
Probab=99.68 E-value=1.7e-16 Score=118.41 Aligned_cols=104 Identities=25% Similarity=0.273 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCc-cCC
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYL-SSA 80 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~-~~~ 80 (145)
||+|.|.|+++| ++|+..|++|+|+|.|+..++++|+.+ .+ + ||.||||+.+++.+.+|+.. +..
T Consensus 106 CTkQaCgFRDnY--~k~kka~aeV~GlS~D~s~sqKaF~sK---qn------l---PYhLLSDpk~e~ik~lGa~k~p~g 171 (211)
T KOG0855|consen 106 CTKQACGFRDNY--EKFKKAGAEVIGLSGDDSASQKAFASK---QN------L---PYHLLSDPKNEVIKDLGAPKDPFG 171 (211)
T ss_pred cccccccccccH--HHHhhcCceEEeeccCchHHHHHhhhh---cc------C---CeeeecCcchhHHHHhCCCCCCCC
Confidence 999999999999 799999999999999999999999987 66 9 99999999999999999986 345
Q ss_pred CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
|.+.|++||+|+.|..............++++.++.|.+
T Consensus 172 g~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~~ 210 (211)
T KOG0855|consen 172 GLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLKA 210 (211)
T ss_pred CcccceEEEEecCCeEEEEEecccCccccHHHHHHHHhc
Confidence 678999999999887776665556666678888887754
No 24
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.67 E-value=1.4e-15 Score=113.21 Aligned_cols=113 Identities=17% Similarity=0.237 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCC--------HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHh
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDS--------HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTY 73 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~--------~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~y 73 (145)
|..+++.|.+++ ++|++.++++|+||.|+ ++..++|+++ ++ + +||+++|.++.+++.|
T Consensus 40 c~~~~~~l~~l~--~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~---~~------~---~~~~l~D~~~~~~~~~ 105 (171)
T cd02969 40 VKAIEDRLNRLA--KEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKE---HG------Y---PFPYLLDETQEVAKAY 105 (171)
T ss_pred HHHHHHHHHHHH--HHHhhCCeEEEEEecCccccccccCHHHHHHHHHH---CC------C---CceEEECCchHHHHHc
Confidence 788999999999 68988999999999865 5666777775 66 8 8999999999999999
Q ss_pred CCCccCCCCcceEEEEECCCCcEEEEEeecCCC-----CCCHHHHHHHHHhccccccCC------cccCCCC
Q psy17183 74 GCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQV-----GRNLKEILRQVEAFQLVDSTD------TQCPVNW 134 (145)
Q Consensus 74 g~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~-----~~~~~ell~~i~~l~~~~~~~------~~~p~~w 134 (145)
|+.. .|++||||++|+|++........ ..+..++.++|+++.....-+ .+|+++|
T Consensus 106 ~v~~------~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 171 (171)
T cd02969 106 GAAC------TPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSIKW 171 (171)
T ss_pred CCCc------CCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCCCCcccCC
Confidence 9973 69999999999999886433221 124678888888887654442 6799998
No 25
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.67 E-value=1.1e-15 Score=109.19 Aligned_cols=96 Identities=33% Similarity=0.537 Sum_probs=82.4
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhc-CCCCCCCCCCCCccEEecCchHHHHHhCCCccC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTAT-SSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS 79 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~ 79 (145)
.|..+++.|++++ ++|+..|+++|+||.|+++.+++|+++ + . . +||+++|+++.++++||+....
T Consensus 37 ~C~~~~~~l~~~~--~~~~~~~~~~i~is~d~~~~~~~~~~~---~~~------~---~~~~l~D~~~~~~~~~g~~~~~ 102 (140)
T cd02971 37 VCTTELCAFRDLA--EEFAKGGAEVLGVSVDSPFSHKAWAEK---EGG------L---NFPLLSDPDGEFAKAYGVLIEK 102 (140)
T ss_pred cCHHHHHHHHHHH--HHHHHCCCEEEEEeCCCHHHHHHHHhc---ccC------C---CceEEECCChHHHHHcCCcccc
Confidence 4999999999999 689888999999999999999999886 6 4 7 8999999999999999988532
Q ss_pred C---CCcceEEEEECCCCcEEEEEeecCCCCCCH
Q psy17183 80 A---GHSLRAYYIIDKRGYLRSMNVSDIQVGRNL 110 (145)
Q Consensus 80 ~---g~~~p~tfIID~dG~I~~~~~~~~~~~~~~ 110 (145)
. +...|++||||++|+|++.+.+..+.....
T Consensus 103 ~~~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~ 136 (140)
T cd02971 103 SAGGGLAARATFIIDPDGKIRYVEVEPLPTGRNA 136 (140)
T ss_pred ccccCceeEEEEEECCCCcEEEEEecCCCCCcCh
Confidence 1 345789999999999999999987633333
No 26
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.66 E-value=8.2e-16 Score=107.60 Aligned_cols=85 Identities=20% Similarity=0.220 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|+.+++.|++++ ++|+.+|+++++||.|+.+.+++|.+. ++ + +||+++|.++++++.||+.....
T Consensus 40 ~c~~~l~~l~~~~--~~~~~~~~~vi~is~d~~~~~~~~~~~---~~------~---~~~~~~D~~~~~~~~~~~~~~~~ 105 (124)
T PF00578_consen 40 FCQAELPELNELY--KKYKDKGVQVIGISTDDPEEIKQFLEE---YG------L---PFPVLSDPDGELAKAFGIEDEKD 105 (124)
T ss_dssp HHHHHHHHHHHHH--HHHHTTTEEEEEEESSSHHHHHHHHHH---HT------C---SSEEEEETTSHHHHHTTCEETTT
T ss_pred ccccchhHHHHHh--hhhccceEEeeecccccccchhhhhhh---hc------c---ccccccCcchHHHHHcCCccccC
Confidence 3999999999999 699999999999999999999999997 65 8 99999999999999999985433
Q ss_pred CCcceEEEEECCCCcEEEE
Q psy17183 81 GHSLRAYYIIDKRGYLRSM 99 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~ 99 (145)
....|++||||++|+|+|.
T Consensus 106 ~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 106 TLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp SEESEEEEEEETTSBEEEE
T ss_pred CceEeEEEEECCCCEEEeC
Confidence 3468999999999999985
No 27
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.63 E-value=3.1e-15 Score=106.24 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeC------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSV------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYG 74 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg 74 (145)
.|..++|.|++++ ++|+..|+.||+|+. ++++..++|+++ ++ + +||+++|+++++++.||
T Consensus 37 ~C~~~~p~l~~l~--~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~---~~------~---~~p~~~D~~~~~~~~~~ 102 (126)
T cd03012 37 NCLHTLPYLTDLE--QKYKDDGLVVIGVHSPEFAFERDLANVKSAVLR---YG------I---TYPVANDNDYATWRAYG 102 (126)
T ss_pred cHHHHHHHHHHHH--HHcCcCCeEEEEeccCccccccCHHHHHHHHHH---cC------C---CCCEEECCchHHHHHhC
Confidence 4899999999999 699999999999986 457788888886 76 8 99999999999999999
Q ss_pred CCccCCCCcceEEEEECCCCcEEEEEeec
Q psy17183 75 CYLSSAGHSLRAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 75 ~~~~~~g~~~p~tfIID~dG~I~~~~~~~ 103 (145)
+. ..|++||||++|+|++++.|+
T Consensus 103 v~------~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 103 NQ------YWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CC------cCCeEEEECCCCcEEEEEecC
Confidence 86 369999999999999999875
No 28
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.57 E-value=2.1e-14 Score=103.73 Aligned_cols=91 Identities=22% Similarity=0.214 Sum_probs=77.8
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC-
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS- 79 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~- 79 (145)
.|..|+|.+.+++ +.|+..|+.+++|+.++.....+|.++ ++ + +||++.|.+++++++||+....
T Consensus 43 ~C~~~~p~l~~l~--~~~~~~~v~~v~v~~~~~~~~~~~~~~---~~------~---~~~~~~D~~~~~~~~~~~~~~~~ 108 (146)
T PF08534_consen 43 PCRKELPYLNELQ--EKYKDKGVDVVGVSSDDDPPVREFLKK---YG------I---NFPVLSDPDGALAKALGVTIMED 108 (146)
T ss_dssp HHHHHHHHHHHHH--HHHHTTTCEEEEEEESSSHHHHHHHHH---TT------T---TSEEEEETTSHHHHHTTCEEECC
T ss_pred cchhhhhhHHhhh--hhhccCceEEEEecccCCHHHHHHHHh---hC------C---CceEEechHHHHHHHhCCccccc
Confidence 3999999999998 588999999999998766668888886 65 7 9999999999999999986321
Q ss_pred --CCCcceEEEEECCCCcEEEEEeecCC
Q psy17183 80 --AGHSLRAYYIIDKRGYLRSMNVSDIQ 105 (145)
Q Consensus 80 --~g~~~p~tfIID~dG~I~~~~~~~~~ 105 (145)
.|...|++||||++|+|++.+.+..+
T Consensus 109 ~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 109 PGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp TTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 23468999999999999999999865
No 29
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.48 E-value=1.3e-13 Score=101.17 Aligned_cols=91 Identities=12% Similarity=0.081 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC--chH-HH
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS--THA-IS 70 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~--~~~-va 70 (145)
|+.|+|.|++++ ++|+.+|++|||||. ++++.+++|+++ +++ + +||+++|. ++. .+
T Consensus 36 C~~e~p~l~~l~--~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~--~~~------~---~fp~~~d~d~~~~~~~ 102 (152)
T cd00340 36 FTPQYEGLEALY--EKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCET--NYG------V---TFPMFAKIDVNGENAH 102 (152)
T ss_pred chHHHHHHHHHH--HHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHH--hcC------C---CceeeeeEeccCCCCC
Confidence 899999999999 689999999999986 346788999874 145 8 89999874 444 56
Q ss_pred HHhCCCccCC-C------CcceEEEEECCCCcEEEEEeecCC
Q psy17183 71 KTYGCYLSSA-G------HSLRAYYIIDKRGYLRSMNVSDIQ 105 (145)
Q Consensus 71 ~~yg~~~~~~-g------~~~p~tfIID~dG~I~~~~~~~~~ 105 (145)
+.|+...... + ...|++||||++|+|++.+.|..+
T Consensus 103 ~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~ 144 (152)
T cd00340 103 PLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTD 144 (152)
T ss_pred hHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCC
Confidence 6676421100 0 013489999999999999998753
No 30
>PLN02412 probable glutathione peroxidase
Probab=99.48 E-value=3.5e-13 Score=100.69 Aligned_cols=101 Identities=11% Similarity=0.094 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHH-HHHHHHHhhcCCCCCCCCCCCCccEEec--Cch-HH
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAH-LAWTKTLTATSSNRSAIDPSKIVPLLSD--STH-AI 69 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~fpllsD--~~~-~v 69 (145)
|..|+|.|++++ ++|+.+|+.|||||.| +.+.. +.|+++ ++ + +||+++| .++ ..
T Consensus 44 c~~e~~~l~~l~--~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~---~~------~---~fpvl~~~d~~g~~~ 109 (167)
T PLN02412 44 TDSNYKELNVLY--EKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTR---FK------A---EFPIFDKVDVNGKNT 109 (167)
T ss_pred hHHHHHHHHHHH--HHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHc---cC------C---CCceEeEEeeCCCCC
Confidence 777999999999 6999999999999964 44443 444554 66 8 9999984 554 77
Q ss_pred HHHhCCCccCC------CC-cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 70 SKTYGCYLSSA------GH-SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 70 a~~yg~~~~~~------g~-~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
+..|+...... +. ..|++||||++|+|++.+.|..+ .+++.+.|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~----~~~l~~~i~~~ 163 (167)
T PLN02412 110 APLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTS----PLKIEKDIQNL 163 (167)
T ss_pred CHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCC----HHHHHHHHHHH
Confidence 88787432110 11 26999999999999999988753 56677777665
No 31
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.45 E-value=1.2e-12 Score=99.17 Aligned_cols=91 Identities=14% Similarity=0.267 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeC-CCHHHHHHHHHHHhhcCCCCCCCCCCCCcc-EEecCchHHHHHhCCCccC
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSV-DSHLAHLAWTKTLTATSSNRSAIDPSKIVP-LLSDSTHAISKTYGCYLSS 79 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~fp-llsD~~~~va~~yg~~~~~ 79 (145)
|..|+|.+.++. ++|++||+||. |+.+.+++|.++ ++ + +|| +++|.++.+++.||+.
T Consensus 83 C~~e~p~l~~l~------~~~~~vi~v~~~~~~~~~~~~~~~---~~------~---~~~~~~~D~~~~~~~~~gv~--- 141 (185)
T PRK15412 83 CRAEHQYLNQLS------AQGIRVVGMNYKDDRQKAISWLKE---LG------N---PYALSLFDGDGMLGLDLGVY--- 141 (185)
T ss_pred HHHHHHHHHHHH------HcCCEEEEEECCCCHHHHHHHHHH---cC------C---CCceEEEcCCccHHHhcCCC---
Confidence 899999987765 34899999997 467778899886 66 7 899 4889999999999987
Q ss_pred CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
..|++||||++|+|++.+.|+.+ .+++.+.|+.+
T Consensus 142 ---~~P~t~vid~~G~i~~~~~G~~~----~~~l~~~i~~~ 175 (185)
T PRK15412 142 ---GAPETFLIDGNGIIRYRHAGDLN----PRVWESEIKPL 175 (185)
T ss_pred ---cCCeEEEECCCceEEEEEecCCC----HHHHHHHHHHH
Confidence 37999999999999999999864 34444444443
No 32
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.44 E-value=4.8e-13 Score=98.06 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC-----chH
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-----THA 68 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~-----~~~ 68 (145)
|..|+|.+++++ ++|+.+|+.|+|||. |+++.+++|+++ +++ + +||+++|. ...
T Consensus 37 c~~~~~~l~~l~--~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~--~~~------~---~fp~~~d~~~~~~~~~ 103 (153)
T TIGR02540 37 TDQNYRALQELH--RELGPSHFNVLAFPCNQFGESEPDSSKEIESFARR--NYG------V---TFPMFSKIKILGSEAE 103 (153)
T ss_pred hhhhHHHHHHHH--HHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHH--hcC------C---CCCccceEecCCCCCC
Confidence 889999999999 699999999999984 678889999874 155 8 99999872 333
Q ss_pred HHHHhCCCccCCCC--cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 69 ISKTYGCYLSSAGH--SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 69 va~~yg~~~~~~g~--~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
.+..|.+... .+. -.+++||||++|+|++.+.+.. +.+++.+.|++|
T Consensus 104 ~~~~~~~~~~-~~~p~~~~~tflID~~G~v~~~~~g~~----~~~~l~~~i~~l 152 (153)
T TIGR02540 104 PAFRFLVDSS-KKEPRWNFWKYLVNPEGQVVKFWRPEE----PVEEIRPEITAL 152 (153)
T ss_pred cHHHHHHhcC-CCCCCCccEEEEEcCCCcEEEEECCCC----CHHHHHHHHHHh
Confidence 3444543211 111 1345999999999999998874 357777777664
No 33
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.44 E-value=2.4e-12 Score=95.16 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=82.3
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS 79 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~ 79 (145)
.|+.+++.|.+++ ++|...++++++|+.| +.+..++|.++ ++ + +||++.|.++++++.||+.
T Consensus 75 ~C~~~~~~l~~~~--~~~~~~~~~vi~i~~d~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~v~--- 137 (173)
T PRK03147 75 PCEKEMPYMNELY--PKYKEKGVEIIAVNVDETELAVKNFVNR---YG------L---TFPVAIDKGRQVIDAYGVG--- 137 (173)
T ss_pred HHHHHHHHHHHHH--HHhhcCCeEEEEEEcCCCHHHHHHHHHH---hC------C---CceEEECCcchHHHHcCCC---
Confidence 4899999999999 6899889999999987 45667888875 76 8 9999999999999999987
Q ss_pred CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
..|++||||++|+|++.+.|..+ .+++.+.+++++
T Consensus 138 ---~~P~~~lid~~g~i~~~~~g~~~----~~~l~~~l~~~~ 172 (173)
T PRK03147 138 ---PLPTTFLIDKDGKVVKVITGEMT----EEQLEEYLEKIK 172 (173)
T ss_pred ---CcCeEEEECCCCcEEEEEeCCCC----HHHHHHHHHHhc
Confidence 37999999999999998877643 567777777665
No 34
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.43 E-value=7.1e-13 Score=100.30 Aligned_cols=103 Identities=12% Similarity=0.171 Sum_probs=71.2
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec--CchHH-
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD--STHAI- 69 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD--~~~~v- 69 (145)
.|..|+|.|++++ ++|+.+|+.|||||.| +.+...+|..+ +++ + +||+++| .++..
T Consensus 55 ~C~~e~p~l~~l~--~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~--~~~------~---~fpv~~d~d~~g~~~ 121 (183)
T PTZ00256 55 LTSDHYTQLVELY--KQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQK--KFN------V---DFPLFQKIEVNGENT 121 (183)
T ss_pred chHHHHHHHHHHH--HHHhhCCcEEEEEecccccccCCCCHHHHHHHHHH--hcC------C---CCCCceEEecCCCCC
Confidence 4999999999999 6999999999999964 34566777542 255 8 9999976 55544
Q ss_pred HHHhCCCccC-----------CCC-cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 70 SKTYGCYLSS-----------AGH-SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 70 a~~yg~~~~~-----------~g~-~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
++.|+..... .++ ..+++||||++|+|++.+.+... .+++.+.|+++
T Consensus 122 ~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~----~~~l~~~I~~l 180 (183)
T PTZ00256 122 HEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVN----PNEMIQDIEKL 180 (183)
T ss_pred CHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCC----HHHHHHHHHHH
Confidence 3444211100 011 13468999999999999988653 44555555544
No 35
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.37 E-value=5e-12 Score=97.19 Aligned_cols=102 Identities=9% Similarity=0.047 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC------ch
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS------TH 67 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~------~~ 67 (145)
|..|+|.|++++ ++|+.+|++|||||. |+++.+++|+++ ++ + +||+++|. .+
T Consensus 54 C~~e~p~L~~l~--~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~---~~------~---~fpvl~d~~v~g~~~~ 119 (199)
T PTZ00056 54 TKKHVDQMNRLH--SVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDK---NK------I---KYNFFEPIEVNGENTH 119 (199)
T ss_pred hHHHHHHHHHHH--HHHhcCceEEEEecchhccCCCCCCHHHHHHHHHH---cC------C---CceeeeeeeccCCccC
Confidence 899999999999 689999999999986 577889999886 76 8 99999872 23
Q ss_pred HHH--------HHhCCCccCCCC-cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 68 AIS--------KTYGCYLSSAGH-SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 68 ~va--------~~yg~~~~~~g~-~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
.+. ..|+......+. ..|++||||++|+|++.+.+... .+++.+.|+.+.
T Consensus 120 ~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~----~~~l~~~I~~ll 178 (199)
T PTZ00056 120 ELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTE----PLELEKKIAELL 178 (199)
T ss_pred HHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCC----HHHHHHHHHHHH
Confidence 333 234332110111 13589999999999998877542 455555555543
No 36
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.36 E-value=6.1e-12 Score=99.26 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe--cCch-HHH
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS--DSTH-AIS 70 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls--D~~~-~va 70 (145)
|..|++.|++++ ++|+.+|++||||+. ++.+.+++|+.+ +++ + +||++. |.+| .++
T Consensus 114 c~~e~p~L~~L~--~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~--~~g------~---~fPvl~~~D~~G~~~~ 180 (236)
T PLN02399 114 TSSNYSELSHLY--EKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACT--RFK------A---EFPIFDKVDVNGPSTA 180 (236)
T ss_pred hHHHHHHHHHHH--HHHhcCCcEEEEEecccccccCCCCHHHHHHHHHH--hcC------C---CCccccccCCCcchhh
Confidence 889999999999 699999999999996 456678888732 265 8 999996 4555 555
Q ss_pred HHhCCCccCC----C---CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 71 KTYGCYLSSA----G---HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 71 ~~yg~~~~~~----g---~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
..|+...... | ...|++||||++|+|++.+.|.. +.+++.+.|+++.
T Consensus 181 ~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~----~~~~le~~I~~lL 234 (236)
T PLN02399 181 PVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTT----SPFQIEKDIQKLL 234 (236)
T ss_pred HHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCC----CHHHHHHHHHHHh
Confidence 6665321000 1 12589999999999999998764 3567777776653
No 37
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.35 E-value=1.5e-11 Score=92.07 Aligned_cols=90 Identities=12% Similarity=0.140 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC-CHHHHHHHHHHHhhcCCCCCCCCCCCCcc-EEecCchHHHHHhCCCccC
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD-SHLAHLAWTKTLTATSSNRSAIDPSKIVP-LLSDSTHAISKTYGCYLSS 79 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~fp-llsD~~~~va~~yg~~~~~ 79 (145)
|..++|.+.+++ +.|++||+||.+ +.+.+++|.++ ++ + +|| ++.|+.+++++.|++.
T Consensus 78 C~~~~p~l~~l~------~~~~~vi~V~~~~~~~~~~~~~~~---~~------~---~f~~v~~D~~~~~~~~~~v~--- 136 (173)
T TIGR00385 78 CRAEHPYLNELA------KDGLPIVGVDYKDQSQNALKFLKE---LG------N---PYQAILIDPNGKLGLDLGVY--- 136 (173)
T ss_pred HHHHHHHHHHHH------HcCCEEEEEECCCChHHHHHHHHH---cC------C---CCceEEECCCCchHHhcCCe---
Confidence 888888887765 347999999975 55667788876 66 7 898 6789999999999987
Q ss_pred CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
..|++|+||++|+|++.+.|..+ .+++.+.|++
T Consensus 137 ---~~P~~~~id~~G~i~~~~~G~~~----~~~l~~~l~~ 169 (173)
T TIGR00385 137 ---GAPETFLVDGNGVILYRHAGPLN----NEVWTEGFLP 169 (173)
T ss_pred ---eCCeEEEEcCCceEEEEEeccCC----HHHHHHHHHH
Confidence 36999999999999999998753 4555555543
No 38
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.31 E-value=1.5e-11 Score=88.02 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=70.5
Q ss_pred ChhHHHHHHHHHhhhhhhhcCC---cEEEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc---hHHH
Q psy17183 1 MDTKIACDVLKLVRKEILIVSP---FQIIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST---HAIS 70 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~g---v~vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~---~~va 70 (145)
.|..+++.|++++ ++|.+++ +++++||.| +++.+++|+++ ++ . +||+++|.. +.++
T Consensus 37 ~C~~~l~~l~~~~--~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~---~~------~---~~~~l~~~~~~~~~~~ 102 (142)
T cd02968 37 VCPTTLANLAQAL--KQLGADGGDDVQVVFISVDPERDTPEVLKAYAKA---FG------P---GWIGLTGTPEEIEALA 102 (142)
T ss_pred cCHHHHHHHHHHH--HHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHH---hC------C---CcEEEECCHHHHHHHH
Confidence 4999999999999 6898875 999999975 46778888886 65 6 899999975 8999
Q ss_pred HHhCCCccCC-------CC-cceEEEEECCCCcEEEEEe
Q psy17183 71 KTYGCYLSSA-------GH-SLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 71 ~~yg~~~~~~-------g~-~~p~tfIID~dG~I~~~~~ 101 (145)
+.||+..... ++ ..|++||||++|+|++.+.
T Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 103 KAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 9999874311 11 2578999999999998764
No 39
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.30 E-value=3.7e-11 Score=84.86 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeC-CCHHHHHHHHHHHhhcCCCCCCCCCCCCcc-EEecCchHHHHHhCCCccC
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSV-DSHLAHLAWTKTLTATSSNRSAIDPSKIVP-LLSDSTHAISKTYGCYLSS 79 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~fp-llsD~~~~va~~yg~~~~~ 79 (145)
|..+++.+.++. +++ +++||+|+. ++.+.+++|+++ ++ + +|+ +++|.++++++.||+.
T Consensus 40 C~~~~~~l~~l~--~~~---~~~vv~v~~~~~~~~~~~~~~~---~~------~---~~~~~~~D~~~~~~~~~~v~--- 99 (127)
T cd03010 40 CREEHPVLMALA--RQG---RVPIYGINYKDNPENALAWLAR---HG------N---PYAAVGFDPDGRVGIDLGVY--- 99 (127)
T ss_pred HHHHHHHHHHHH--Hhc---CcEEEEEECCCCHHHHHHHHHh---cC------C---CCceEEECCcchHHHhcCCC---
Confidence 889999999876 343 599999996 678888999886 65 7 786 6799999999999998
Q ss_pred CCCcceEEEEECCCCcEEEEEeecCC
Q psy17183 80 AGHSLRAYYIIDKRGYLRSMNVSDIQ 105 (145)
Q Consensus 80 ~g~~~p~tfIID~dG~I~~~~~~~~~ 105 (145)
..|++||||++|+|++.+.|..+
T Consensus 100 ---~~P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 100 ---GVPETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred ---CCCeEEEECCCceEEEEEeccCC
Confidence 37999999999999999998754
No 40
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.26 E-value=7.7e-11 Score=79.47 Aligned_cols=82 Identities=23% Similarity=0.318 Sum_probs=71.7
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCC--HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDS--HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS 78 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~--~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~ 78 (145)
.|...++.|.++. ++|...++.+++|+.|+ ++..++|.+. ++ . +|+++.|...++++.||+.
T Consensus 33 ~C~~~~~~l~~~~--~~~~~~~~~~~~v~~d~~~~~~~~~~~~~---~~------~---~~~~~~~~~~~~~~~~~~~-- 96 (116)
T cd02966 33 PCRAEMPELEALA--KEYKDDGVEVVGVNVDDDDPAAVKAFLKK---YG------I---TFPVLLDPDGELAKAYGVR-- 96 (116)
T ss_pred hHHHHhHHHHHHH--HHhCCCCeEEEEEECCCCCHHHHHHHHHH---cC------C---CcceEEcCcchHHHhcCcC--
Confidence 3888999999988 57877899999999997 7888888886 65 7 9999999999999999987
Q ss_pred CCCCcceEEEEECCCCcEEEEEee
Q psy17183 79 SAGHSLRAYYIIDKRGYLRSMNVS 102 (145)
Q Consensus 79 ~~g~~~p~tfIID~dG~I~~~~~~ 102 (145)
..|++||+|++|+|++.+.|
T Consensus 97 ----~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 97 ----GLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ----ccceEEEECCCCcEEEEecC
Confidence 37999999999999987653
No 41
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.23 E-value=6.7e-11 Score=87.16 Aligned_cols=79 Identities=11% Similarity=0.148 Sum_probs=62.4
Q ss_pred ChhHHHHHHHHHhhhhhhhc-------CCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCc---cEEecCchHH
Q psy17183 1 MDTKIACDVLKLVRKEILIV-------SPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIV---PLLSDSTHAI 69 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~-------~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~f---pllsD~~~~v 69 (145)
.|..|+|.|.++| +++++ ++++||+||.|. .+..++|.++ .+ + +| |+..+..+.+
T Consensus 39 pCr~e~P~L~~ly--~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~---~~------~---~~~~~p~~~~~~~~l 104 (146)
T cd03008 39 QCQLFAPKLKDFF--VRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKD---MP------K---KWLFLPFEDEFRREL 104 (146)
T ss_pred hHHHHHHHHHHHH--HHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHH---CC------C---CceeecccchHHHHH
Confidence 4999999999998 46654 379999999984 4557788776 54 4 45 4445556799
Q ss_pred HHHhCCCccCCCCcceEEEEECCCCcEEEE
Q psy17183 70 SKTYGCYLSSAGHSLRAYYIIDKRGYLRSM 99 (145)
Q Consensus 70 a~~yg~~~~~~g~~~p~tfIID~dG~I~~~ 99 (145)
++.||+. .+|++||||++|+|+..
T Consensus 105 ~~~y~v~------~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 105 EAQFSVE------ELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHcCCC------CCCEEEEECCCCcEEee
Confidence 9999987 47999999999999866
No 42
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.22 E-value=9.1e-11 Score=89.25 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=70.5
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|..++|.+++.++ ..++.+++||.|+++.+++|+++ ++ + +|+.+. .++++++.||+.
T Consensus 88 ~C~~~lp~l~~~~~-----~~~~~vv~Is~~~~~~~~~~~~~---~~------~---~~~~~~-~~~~i~~~y~v~---- 145 (189)
T TIGR02661 88 VCDKLFPIIKSIAR-----AEETDVVMISDGTPAEHRRFLKD---HE------L---GGERYV-VSAEIGMAFQVG---- 145 (189)
T ss_pred hHHHHHHHHHHHHH-----hcCCcEEEEeCCCHHHHHHHHHh---cC------C---Ccceee-chhHHHHhccCC----
Confidence 38999999999872 24788999999999999999986 66 7 777654 578999999987
Q ss_pred CCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183 81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~ 118 (145)
..|++||||++|+|++.. ..+..+++++++++++
T Consensus 146 --~~P~~~lID~~G~I~~~g--~~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 146 --KIPYGVLLDQDGKIRAKG--LTNTREHLESLLEADR 179 (189)
T ss_pred --ccceEEEECCCCeEEEcc--CCCCHHHHHHHHHHHH
Confidence 379999999999999863 3233334555555543
No 43
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.19 E-value=1e-10 Score=89.18 Aligned_cols=97 Identities=12% Similarity=0.204 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEE------EEEeCCC-HHHHHHHHHH-HhhcCCCCCCCCCCCCcc---EEecCchHHH
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQI------IAVSVDS-HLAHLAWTKT-LTATSSNRSAIDPSKIVP---LLSDSTHAIS 70 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~v------i~VS~D~-~~~~~~~~~~-~~~~~~~~~~~~~~~~fp---llsD~~~~va 70 (145)
|..|+|.+.++ +++|+.+ ++||.|+ ......|.+. +++.+ . .|| ++.|.++.++
T Consensus 74 c~~e~P~l~~l------~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~------~---~~P~~~vllD~~g~v~ 138 (184)
T TIGR01626 74 KEXNASLIDAI------KAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGK------K---ENPWSQVVLDDKGAVK 138 (184)
T ss_pred hhccchHHHHH------HHcCCCcccccceEEEECccchhhHHHHHHHHHHHhc------c---cCCcceEEECCcchHH
Confidence 78888888776 3456666 9999985 3344444332 12244 6 788 9999999999
Q ss_pred HHhCCCccCCCCcceEE-EEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 71 KTYGCYLSSAGHSLRAY-YIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 71 ~~yg~~~~~~g~~~p~t-fIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
.+||+. ..|.+ ||||++|+|++.+.|..+. ...++++..|+++
T Consensus 139 ~~~gv~------~~P~T~fVIDk~GkVv~~~~G~l~~-ee~e~~~~li~~l 182 (184)
T TIGR01626 139 NAWQLN------SEDSAIIVLDKTGKVKFVKEGALSD-SDIQTVISLVNGL 182 (184)
T ss_pred HhcCCC------CCCceEEEECCCCcEEEEEeCCCCH-HHHHHHHHHHHHH
Confidence 999987 36787 9999999999999998642 2345556666554
No 44
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.13 E-value=5.3e-10 Score=77.20 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=63.2
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|..+++.+.+++ +++. .++.+++|+.++.+..++|+++ ++ ++ .||++.+ +++++.||+.
T Consensus 35 ~C~~~~p~l~~~~--~~~~-~~~~vi~v~~~~~~~~~~~~~~---~~------~~--~~p~~~~--~~~~~~~~~~---- 94 (114)
T cd02967 35 VCKKLLPVIRSIA--RAEA-DWLDVVLASDGEKAEHQRFLKK---HG------LE--AFPYVLS--AELGMAYQVS---- 94 (114)
T ss_pred chHhHhHHHHHHH--HHhc-CCcEEEEEeCCCHHHHHHHHHH---hC------CC--CCcEEec--HHHHhhcCCC----
Confidence 4999999999987 4553 4688999987788888899886 65 51 3898874 5689999986
Q ss_pred CCcceEEEEECCCCcEEEEE
Q psy17183 81 GHSLRAYYIIDKRGYLRSMN 100 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~~ 100 (145)
..|++||||++|+|++..
T Consensus 95 --~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 95 --KLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred --CcCeEEEECCCCeEEecc
Confidence 379999999999999864
No 45
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.13 E-value=7.6e-10 Score=77.41 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=69.3
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCC--CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVD--SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS 78 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~ 78 (145)
.|..+++.++++++ . +.+++|+.| +++.+++|+++ ++ + +||+++|.++++++.|++.
T Consensus 34 ~C~~~~~~l~~~~~--~-----~~~i~i~~~~~~~~~~~~~~~~---~~------~---~~~~~~d~~~~~~~~~~i~-- 92 (123)
T cd03011 34 VCRFTSPTVNQLAA--D-----YPVVSVALRSGDDGAVARFMQK---KG------Y---GFPVINDPDGVISARWGVS-- 92 (123)
T ss_pred hhhhhChHHHHHHh--h-----CCEEEEEccCCCHHHHHHHHHH---cC------C---CccEEECCCcHHHHhCCCC--
Confidence 48888999998873 3 678888876 46788888886 76 8 9999999999999999987
Q ss_pred CCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHH
Q psy17183 79 SAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILR 115 (145)
Q Consensus 79 ~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~ 115 (145)
..|+.||||++| |++...|..+ .+++.+
T Consensus 93 ----~~P~~~vid~~g-i~~~~~g~~~----~~~~~~ 120 (123)
T cd03011 93 ----VTPAIVIVDPGG-IVFVTTGVTS----EWGLRL 120 (123)
T ss_pred ----cccEEEEEcCCC-eEEEEeccCC----HHHHHh
Confidence 379999999999 9998887643 455544
No 46
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=8.1e-10 Score=81.33 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=74.0
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC-chHHHHHhCCCccC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THAISKTYGCYLSS 79 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~-~~~va~~yg~~~~~ 79 (145)
.|..|...|.+... ++. ++.|+.||.|-|+++++|+.. ++ +. +...+||. +.++.+.||+...+
T Consensus 59 VC~~qvr~Fn~~aa--~~~--~~~Vl~IS~DLPFAq~RfC~a---eG------i~--nv~~lSd~r~~~Fge~yGv~I~e 123 (158)
T COG2077 59 VCATQVRKFNEEAA--KLG--NTVVLCISMDLPFAQKRFCGA---EG------IE--NVITLSDFRDRAFGENYGVLINE 123 (158)
T ss_pred hhhHHHHHHHHHHh--ccC--CcEEEEEeCCChhHHhhhhhh---cC------cc--cceEhhhhhhhhhhHhhCEEecc
Confidence 38899999998773 443 699999999999999999996 64 41 68899997 77799999998765
Q ss_pred C---CCcceEEEEECCCCcEEEEEeec
Q psy17183 80 A---GHSLRAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 80 ~---g~~~p~tfIID~dG~I~~~~~~~ 103 (145)
. |+..|++||+|.+|+|.|..+-+
T Consensus 124 gpL~gLlARaV~V~De~g~V~y~elv~ 150 (158)
T COG2077 124 GPLAGLLARAVFVLDENGKVTYSELVP 150 (158)
T ss_pred ccccCeeeeEEEEEcCCCcEEEEEccc
Confidence 3 88899999999999999997643
No 47
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.07 E-value=1.8e-09 Score=93.67 Aligned_cols=94 Identities=16% Similarity=0.197 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCC
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC 75 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D------~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~ 75 (145)
|..++|.|++++ ++++..+++||+|+.+ +....++|.+. .+ ++ .||++.|.++++++.|++
T Consensus 71 Ck~emP~L~eL~--~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~---~~------y~--~~pV~~D~~~~lak~fgV 137 (521)
T PRK14018 71 CLSELGETEKWA--QDAKFSSANLITVASPGFLHEKKDGDFQKWYAG---LD------YP--KLPVLTDNGGTLAQSLNI 137 (521)
T ss_pred HHHHHHHHHHHH--HHhccCCeEEEEEecccccccccHHHHHHHHHh---CC------Cc--ccceeccccHHHHHHcCC
Confidence 899999999998 5788789999999863 23445556554 32 32 579999999999999999
Q ss_pred CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183 76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118 (145)
Q Consensus 76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~ 118 (145)
. .+|++||||++|+|++...|..+ .+++.+.|+
T Consensus 138 ~------giPTt~IIDkdGkIV~~~~G~~~----~eeL~a~Ie 170 (521)
T PRK14018 138 S------VYPSWAIIGKDGDVQRIVKGSIS----EAQALALIR 170 (521)
T ss_pred C------CcCeEEEEcCCCeEEEEEeCCCC----HHHHHHHHH
Confidence 7 47999999999999999999864 566766666
No 48
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=2.7e-09 Score=99.23 Aligned_cols=95 Identities=18% Similarity=0.143 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeC---CC---HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCC
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSV---DS---HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGC 75 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~---D~---~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~ 75 (145)
|..|+|.|++++ ++|+.+++.||+|+. |. .+..++|.. +++ + +||++.|.++++++.|++
T Consensus 435 C~~e~P~L~~l~--~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~---~~~------i---~~pvv~D~~~~~~~~~~V 500 (1057)
T PLN02919 435 CMHVLPDLEFLE--KKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVL---RYN------I---SHPVVNDGDMYLWRELGV 500 (1057)
T ss_pred HHhHhHHHHHHH--HHcCCCCeEEEEEecccccccccHHHHHHHHH---HhC------C---CccEEECCchHHHHhcCC
Confidence 999999999999 689989999999974 32 334445554 476 8 999999999999999998
Q ss_pred CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
. ..|++||||++|+|++.+.|+.. .+++.+.|+++
T Consensus 501 ~------~iPt~ilid~~G~iv~~~~G~~~----~~~l~~~l~~~ 535 (1057)
T PLN02919 501 S------SWPTFAVVSPNGKLIAQLSGEGH----RKDLDDLVEAA 535 (1057)
T ss_pred C------ccceEEEECCCCeEEEEEecccC----HHHHHHHHHHH
Confidence 7 47999999999999999888643 34555544444
No 49
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.93 E-value=3.2e-09 Score=75.39 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHhhhhhhhcC--CcEEEEEeCCCHH-HHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183 2 DTKIACDVLKLVRKEILIVS--PFQIIAVSVDSHL-AHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS 78 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~--gv~vi~VS~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~ 78 (145)
|+.++|.+++++ ++++.+ +++|++||.|... ..+++.+. .. ...+ +|+. +|....+++.||+.
T Consensus 33 C~~~~p~l~~~~--~~~~~~~~~~~vv~is~d~~~~~~~~~~~~---~~---~~~~---~~~~-~~~~~~~~~~~~v~-- 98 (131)
T cd03009 33 CRAFTPKLVEFY--EKLKESGKNFEIVFISWDRDEESFNDYFSK---MP---WLAV---PFSD-RERRSRLNRTFKIE-- 98 (131)
T ss_pred HHHHhHHHHHHH--HHHHhcCCCEEEEEEECCCCHHHHHHHHHc---CC---eeEc---ccCC-HHHHHHHHHHcCCC--
Confidence 999999999998 588764 7999999998543 33444443 32 1114 4544 56678999999997
Q ss_pred CCCCcceEEEEECCCCcEEEEEe
Q psy17183 79 SAGHSLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 79 ~~g~~~p~tfIID~dG~I~~~~~ 101 (145)
..|++||||++|+|+....
T Consensus 99 ----~~P~~~lid~~G~i~~~~~ 117 (131)
T cd03009 99 ----GIPTLIILDADGEVVTTDA 117 (131)
T ss_pred ----CCCEEEEECCCCCEEcccH
Confidence 3799999999999986643
No 50
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.92 E-value=8.7e-09 Score=78.42 Aligned_cols=89 Identities=4% Similarity=0.081 Sum_probs=67.4
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec-CchHHHHHhCCCccC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD-STHAISKTYGCYLSS 79 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD-~~~~va~~yg~~~~~ 79 (145)
.|.+|+|.|++++ ++| |+.|++||.|.. .. . .||++.| ..+.+.+.||+..
T Consensus 83 ~C~~e~P~L~~l~--~~~---g~~Vi~Vs~D~~------------~~------~---~fPv~~dd~~~~~~~~~g~~~-- 134 (181)
T PRK13728 83 YCHQFDPVLKQLA--QQY---GFSVFPYTLDGQ------------GD------T---AFPEALPAPPDVMQTFFPNIP-- 134 (181)
T ss_pred hHHHHHHHHHHHH--HHc---CCEEEEEEeCCC------------CC------C---CCceEecCchhHHHHHhCCCC--
Confidence 4999999999998 455 799999998742 11 5 8999996 6778888999521
Q ss_pred CCCcceEEEEECCCCcEEE-EEeecCCCCCCHHHHHHHHHhcccc
Q psy17183 80 AGHSLRAYYIIDKRGYLRS-MNVSDIQVGRNLKEILRQVEAFQLV 123 (145)
Q Consensus 80 ~g~~~p~tfIID~dG~I~~-~~~~~~~~~~~~~ell~~i~~l~~~ 123 (145)
...|++||||++|+|++ .+.|... .+++.+.|+.+...
T Consensus 135 --~~iPttfLId~~G~i~~~~~~G~~~----~~~L~~~I~~ll~~ 173 (181)
T PRK13728 135 --VATPTTFLVNVNTLEALPLLQGATD----AAGFMARMDTVLQM 173 (181)
T ss_pred --CCCCeEEEEeCCCcEEEEEEECCCC----HHHHHHHHHHHHhh
Confidence 14799999999999975 7888753 56666666665543
No 51
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.89 E-value=1.2e-08 Score=68.39 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHhhhhhhh-cCCcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEE---ecCchHHHHHhCCC
Q psy17183 2 DTKIACDVLKLVRKEILI-VSPFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLL---SDSTHAISKTYGCY 76 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~-~~gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpll---sD~~~~va~~yg~~ 76 (145)
|..+++.+.+++ +.|+ ..++++|+||.|. .+..+++.++ .+ . +++.+ .+....+.+.|++.
T Consensus 16 c~~~~~~l~~l~--~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~---~~------~---~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 16 CKKELPKLKELY--KKYKKKDDVEFVFVSLDEDEEEWKKFLKK---NN------F---PWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp HHHHHHHHHHHH--HHHTTTTTEEEEEEE-SSSHHHHHHHHHT---CT------T---SSEEEETTTHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHH--HHhCCCCCEEEEEEEeCCCHHHHHHHHHh---cC------C---CceEEeeCcchHHHHHHHCCCC
Confidence 899999999999 5887 7889999999984 3444555443 53 3 44443 34478899999988
Q ss_pred ccCCCCcceEEEEECCCCcE
Q psy17183 77 LSSAGHSLRAYYIIDKRGYL 96 (145)
Q Consensus 77 ~~~~g~~~p~tfIID~dG~I 96 (145)
..|+++|||++|+|
T Consensus 82 ------~iP~~~lld~~G~I 95 (95)
T PF13905_consen 82 ------GIPTLVLLDPDGKI 95 (95)
T ss_dssp ------SSSEEEEEETTSBE
T ss_pred ------cCCEEEEECCCCCC
Confidence 47999999999997
No 52
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.1e-08 Score=75.30 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=75.1
Q ss_pred hhH-HHHHHHHHhhhhhhhcCCcE-EEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC
Q psy17183 2 DTK-IACDVLKLVRKEILIVSPFQ-IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS 79 (145)
Q Consensus 2 ~t~-e~~~~~~~~~~~~f~~~gv~-vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~ 79 (145)
|+. .+|.|.+++ ++|+++|+. |+.||+++++...+|++. .+ + . - ...+++|.++++.+++|+....
T Consensus 53 CS~~hlPgY~~~~--d~f~~kGVD~I~cVSVND~FVm~AWak~---~g--~-~-~---~I~fi~Dg~geFTk~~Gm~~d~ 120 (165)
T COG0678 53 CSSSHLPGYLELA--DEFKAKGVDEIYCVSVNDAFVMNAWAKS---QG--G-E-G---NIKFIPDGNGEFTKAMGMLVDK 120 (165)
T ss_pred cccccCccHHHHH--HHHHHcCCceEEEEEeCcHHHHHHHHHh---cC--C-C-c---cEEEecCCCchhhhhcCceeec
Confidence 554 899999999 799999995 899999999999999997 43 1 1 1 5789999999999999997653
Q ss_pred --CCC---cceEEEEECCCCcEEEEEeecC
Q psy17183 80 --AGH---SLRAYYIIDKRGYLRSMNVSDI 104 (145)
Q Consensus 80 --~g~---~~p~tfIID~dG~I~~~~~~~~ 104 (145)
.|+ +.|...|| +||+|.+.++.+.
T Consensus 121 ~~~g~G~RS~RYsmvV-~nGvV~~~~iE~p 149 (165)
T COG0678 121 SDLGFGVRSWRYSMVV-ENGVVEKLFIEPP 149 (165)
T ss_pred ccCCcceeeeeEEEEE-eCCeEEEEEecCC
Confidence 232 67889999 9999999998763
No 53
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.84 E-value=2.9e-08 Score=70.84 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=60.6
Q ss_pred ChhHHHHHHHHHhhhhhhhcC--CcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEec--CchHHHHHhCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVS--PFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD--STHAISKTYGC 75 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~--gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD--~~~~va~~yg~ 75 (145)
.|..+++.+++++ ++++.. +++|++||.|. ....++|.++ ++ . .. .++ ..| ..+.+++.||+
T Consensus 31 ~C~~~~p~l~~l~--~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~---~~--~---~~--~~~-~~d~~~~~~~~~~~~v 97 (132)
T cd02964 31 PCRAFTPKLVEFY--EKLKEEGKNFEIVFVSRDRSEESFNEYFSE---MP--P---WL--AVP-FEDEELRELLEKQFKV 97 (132)
T ss_pred hHHHHHHHHHHHH--HHHhhcCCCeEEEEEecCCCHHHHHHHHhc---CC--C---eE--eec-cCcHHHHHHHHHHcCC
Confidence 4999999999998 578764 89999999974 4567777775 42 0 20 122 234 24678889998
Q ss_pred CccCCCCcceEEEEECCCCcEEEEEe
Q psy17183 76 YLSSAGHSLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 76 ~~~~~g~~~p~tfIID~dG~I~~~~~ 101 (145)
. ..|++||||++|+|++...
T Consensus 98 ~------~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 98 E------GIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred C------CCCEEEEECCCCCEEchhH
Confidence 7 3799999999999986654
No 54
>KOG0541|consensus
Probab=98.74 E-value=2e-08 Score=74.38 Aligned_cols=94 Identities=24% Similarity=0.338 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcE-EEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQ-IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~-vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
|...+|.|.+.. ++|+.+|+. ||.||+|+++...+|.+.+.+. - ...+++|++|++.+++|+..+..
T Consensus 60 s~~HvPGyi~~a--~elksKGVd~iicvSVnDpFv~~aW~k~~g~~-------~---~V~f~aD~~g~ftk~lgleld~~ 127 (171)
T KOG0541|consen 60 SSSHVPGYIEKA--DELKSKGVDEIICVSVNDPFVMKAWAKSLGAN-------D---HVKFVADPAGEFTKSLGLELDLS 127 (171)
T ss_pred ccccCchHHHHH--HHHHhcCCcEEEEEecCcHHHHHHHHhhcCcc-------c---eEEEEecCCCceeeeccceeeec
Confidence 456789999988 799999996 8889999999999999984222 2 68899999999999999876531
Q ss_pred ----C-CcceEEEEECCCCcEEEEEeecCCCCC
Q psy17183 81 ----G-HSLRAYYIIDKRGYLRSMNVSDIQVGR 108 (145)
Q Consensus 81 ----g-~~~p~tfIID~dG~I~~~~~~~~~~~~ 108 (145)
| .+.|...++ .||+|.+..+.+.+.+-
T Consensus 128 d~~~g~RS~R~a~vv-engkV~~~nvE~~g~~~ 159 (171)
T KOG0541|consen 128 DKLLGVRSRRYALVV-ENGKVTVVNVEEGGTDF 159 (171)
T ss_pred cccCccccccEEEEE-eCCeEEEEEeccCCCce
Confidence 2 256777777 89999999998765433
No 55
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.73 E-value=1e-07 Score=72.58 Aligned_cols=104 Identities=8% Similarity=0.073 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeC--------CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEE--ecCchH---
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSV--------DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLL--SDSTHA--- 68 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpll--sD~~~~--- 68 (145)
||.|++.|++++ ++|+.+|++|+||+. ++.+.+++|++. +++ + +||++ .|.+|+
T Consensus 39 ~~~q~~~L~~L~--~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~--~~g------~---~Fpv~~k~dvnG~~~~ 105 (183)
T PRK10606 39 LTPQYEQLENIQ--KAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRT--TWG------V---TFPMFSKIEVNGEGRH 105 (183)
T ss_pred CcHHHHHHHHHH--HHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHH--ccC------C---CceeEEEEccCCCCCC
Confidence 467999999999 699999999999987 467888999863 265 8 99999 444433
Q ss_pred -HHHHhCCCccC------CCC------------------cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 69 -ISKTYGCYLSS------AGH------------------SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 69 -va~~yg~~~~~------~g~------------------~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
+-+-+.-..+. .+. =+=+-|+||++|+++..+-... .+...++.+.|+++
T Consensus 106 pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~--~p~~~~i~~~i~~~ 180 (183)
T PRK10606 106 PLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDM--TPEDPIVMESIKLA 180 (183)
T ss_pred HHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCC--CCCHHHHHHHHHHH
Confidence 32222110000 000 0113799999999998875432 23344566666654
No 56
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.72 E-value=1.4e-07 Score=65.98 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=65.5
Q ss_pred HHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccC---------
Q psy17183 9 VLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS--------- 79 (145)
Q Consensus 9 ~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~--------- 79 (145)
|++.. ++|++.|+.+|+|+..+++..++|++. .. + +|||++|++.++-+++|+....
T Consensus 2 L~~~~--~~l~~~gv~lv~I~~g~~~~~~~f~~~---~~------~---p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~ 67 (115)
T PF13911_consen 2 LSRRK--PELEAAGVKLVVIGCGSPEGIEKFCEL---TG------F---PFPLYVDPERKLYKALGLKRGLKWSLLPPAL 67 (115)
T ss_pred hhHhH--HHHHHcCCeEEEEEcCCHHHHHHHHhc---cC------C---CCcEEEeCcHHHHHHhCCccccccCCCchHH
Confidence 34444 688999999999999999789999975 54 8 9999999999999999986521
Q ss_pred ---------------------CC--CcceEEEEECCCCcEEEEEee
Q psy17183 80 ---------------------AG--HSLRAYYIIDKRGYLRSMNVS 102 (145)
Q Consensus 80 ---------------------~g--~~~p~tfIID~dG~I~~~~~~ 102 (145)
.| ....++||+|++|+|+|.|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 68 WSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD 113 (115)
T ss_pred HHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence 01 246789999999999999874
No 57
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.67 E-value=1.4e-07 Score=69.89 Aligned_cols=84 Identities=10% Similarity=0.078 Sum_probs=57.9
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHH-HHh---CCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAIS-KTY---GCY 76 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va-~~y---g~~ 76 (145)
.|..|+|.+++++ +++ |+.|++||.|... . - .||...|.+.... +.| ++.
T Consensus 64 pCr~e~P~L~~l~--~~~---~~~Vi~Vs~d~~~-----------~-------~---~fp~~~~~~~~~~~~~~~~~~v~ 117 (153)
T TIGR02738 64 YCHQFAPVLKRFS--QQF---GLPVYAFSLDGQG-----------L-------T---GFPDPLPATPEVMQTFFPNPRPV 117 (153)
T ss_pred hHHHHHHHHHHHH--HHc---CCcEEEEEeCCCc-----------c-------c---ccccccCCchHHHHHHhccCCCC
Confidence 4999999999998 455 6899999988522 1 1 4666665544544 445 443
Q ss_pred ccCCCCcceEEEEECCCCcE-EEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 77 LSSAGHSLRAYYIIDKRGYL-RSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 77 ~~~~g~~~p~tfIID~dG~I-~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
..|++||||++|++ +..+.|..+ .+++.+.|+.+
T Consensus 118 ------~iPTt~LID~~G~~i~~~~~G~~s----~~~l~~~I~~l 152 (153)
T TIGR02738 118 ------VTPATFLVNVNTRKAYPVLQGAVD----EAELANRMDEI 152 (153)
T ss_pred ------CCCeEEEEeCCCCEEEEEeecccC----HHHHHHHHHHh
Confidence 47999999999886 446777643 56666666543
No 58
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=98.63 E-value=5.4e-09 Score=60.90 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=23.1
Q ss_pred hccccccCCcccCCCCCCCCCccccC
Q psy17183 119 AFQLVDSTDTQCPVNWTTGQPSVKVA 144 (145)
Q Consensus 119 ~l~~~~~~~~~~p~~w~~~~~~~~~~ 144 (145)
+||++++|+.+||+||++|+++|+|+
T Consensus 1 ALQ~~d~~~v~tPanW~pGd~~ivpp 26 (40)
T PF10417_consen 1 ALQFTDKHGVATPANWKPGDDVIVPP 26 (40)
T ss_dssp HHHHHHHHSSBBCTTTCTTSGEBE-T
T ss_pred CceehhhhCcccCcCCCCCCCeEcCC
Confidence 57899999999999999999999854
No 59
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.79 E-value=0.00022 Score=57.39 Aligned_cols=84 Identities=11% Similarity=0.108 Sum_probs=61.1
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|..++|.|+++. ++| |+.|++||.|... . - .||.+ +.+..+++.||+.
T Consensus 180 ~C~~~~P~L~~la--~~y---g~~Vi~VsvD~~~-----------~-------~---~fp~~-~~d~~la~~~gV~---- 228 (271)
T TIGR02740 180 YCHQQAPILQAFE--DRY---GIEVLPVSVDGGP-----------L-------P---GFPNA-RPDAGQAQQLKIR---- 228 (271)
T ss_pred cHHHHhHHHHHHH--HHc---CcEEEEEeCCCCc-----------c-------c---cCCcc-cCCHHHHHHcCCC----
Confidence 4899999999988 355 6999999998521 1 1 46665 4556689999997
Q ss_pred CCcceEEEEECCC-CcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 81 GHSLRAYYIIDKR-GYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 81 g~~~p~tfIID~d-G~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
..|++||+|++ |+|..+..|..+ .+++.+.|..+.
T Consensus 229 --~vPtl~Lv~~~~~~v~~v~~G~~s----~~eL~~~i~~~a 264 (271)
T TIGR02740 229 --TVPAVFLADPDPNQFTPIGFGVMS----ADELVDRILLAA 264 (271)
T ss_pred --cCCeEEEEECCCCEEEEEEeCCCC----HHHHHHHHHHHh
Confidence 47999999995 666666666543 567777666554
No 60
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.61 E-value=0.00092 Score=48.58 Aligned_cols=46 Identities=9% Similarity=0.161 Sum_probs=35.1
Q ss_pred HHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcccc
Q psy17183 68 AISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLV 123 (145)
Q Consensus 68 ~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~ 123 (145)
.+++.|++. ..|+++|+|++|+++....|..+ .+++.+.|+++...
T Consensus 67 ~~~~~~~V~------~iPt~v~~~~~G~~v~~~~G~~~----~~~l~~~l~~l~~~ 112 (142)
T cd02950 67 PEIDRYRVD------GIPHFVFLDREGNEEGQSIGLQP----KQVLAQNLDALVAG 112 (142)
T ss_pred HHHHHcCCC------CCCEEEEECCCCCEEEEEeCCCC----HHHHHHHHHHHHcC
Confidence 567888887 37999999999999999988643 45666666665543
No 61
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0011 Score=49.35 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=65.6
Q ss_pred hHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEec--CchH----
Q psy17183 3 TKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD--STHA---- 68 (145)
Q Consensus 3 t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD--~~~~---- 68 (145)
|.|...|+.+| ++|+.+|+.|+|.-.+ +.+..++|+.. .++ + +||+++= -+|+
T Consensus 40 TpQYegLe~Ly--~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~--~Yg------V---tFp~f~Ki~VnG~~a~P 106 (162)
T COG0386 40 TPQYEGLEALY--KKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQL--NYG------V---TFPMFSKIDVNGKNAHP 106 (162)
T ss_pred cHhHHHHHHHH--HHHhhCCcEEEeccccccccCCCCCHHHHHHHHHh--ccC------c---eeeeeeEEeecCCCCCc
Confidence 67888999999 6999999999999543 56778889886 455 8 9999853 2222
Q ss_pred HHHHhCCCccC--CCC---cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 69 ISKTYGCYLSS--AGH---SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 69 va~~yg~~~~~--~g~---~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
+-+.+--..+. .|- =+=+-|+||++|+|+.++.... ..+++...|+++
T Consensus 107 Ly~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t----~P~d~~~~Ie~l 159 (162)
T COG0386 107 LYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKT----KPEDIELAIEKL 159 (162)
T ss_pred HHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCC----ChhhHHHHHHHH
Confidence 22222111100 011 1235799999999998875442 234555566554
No 62
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=97.45 E-value=0.00035 Score=52.50 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhhhhhhhc--CCcEEEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe---cCchHHHHH
Q psy17183 2 DTKIACDVLKLVRKEILIV--SPFQIIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS---DSTHAISKT 72 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~--~gv~vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls---D~~~~va~~ 72 (145)
|...+..+.+.. +.+.+ ..++++.||.| +++..++|++. ++ . .|..+. +.-.++++.
T Consensus 68 Cp~~l~~l~~~~--~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~---~~------~---~~~~ltg~~~~i~~l~~~ 133 (174)
T PF02630_consen 68 CPTTLANLSQLQ--KQLGEEGKDVQFVFISVDPERDTPEVLKKYAKK---FG------P---DFIGLTGSREEIEELAKQ 133 (174)
T ss_dssp HHHHHHHHHHHH--HHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHC---HT------T---TCEEEEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--HHhhhccCceEEEEEEeCCCCCCHHHHHHHHHh---cC------C---CcceeEeCHHHHHHHHHH
Confidence 777777777766 45554 47899999976 57888999886 44 3 444333 345678888
Q ss_pred hCCCccC------C--CC--cceEEEEECCCCcEEEEEe
Q psy17183 73 YGCYLSS------A--GH--SLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 73 yg~~~~~------~--g~--~~p~tfIID~dG~I~~~~~ 101 (145)
|++.... . +. -...+|||||+|+|+..+.
T Consensus 134 ~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 134 FGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp CTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 9876421 1 11 1357899999999998764
No 63
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.33 E-value=0.0036 Score=46.74 Aligned_cols=93 Identities=11% Similarity=0.152 Sum_probs=60.0
Q ss_pred HHHHHHhhhhhhhcCCcEEEEE-eCCC-HH----HHHHHHHHHhhcCCCCCCCCCCCCcc-EEecCchHHHHHhCCCccC
Q psy17183 7 CDVLKLVRKEILIVSPFQIIAV-SVDS-HL----AHLAWTKTLTATSSNRSAIDPSKIVP-LLSDSTHAISKTYGCYLSS 79 (145)
Q Consensus 7 ~~~~~~~~~~~f~~~gv~vi~V-S~D~-~~----~~~~~~~~~~~~~~~~~~~~~~~~fp-llsD~~~~va~~yg~~~~~ 79 (145)
..|.+......|....++..+| +.|+ .. -.+..+++- +.. . |+. ++.|.+|.+.++|++...
T Consensus 56 ~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~-kk~------~---p~s~~vlD~~G~~~~aW~L~~~- 124 (160)
T PF09695_consen 56 APLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDS-KKE------F---PWSQFVLDSNGVVRKAWQLQEE- 124 (160)
T ss_pred HHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHh-hhh------C---CCcEEEEcCCCceeccccCCCC-
Confidence 3445444323476677888877 5653 11 223333321 111 4 566 789999999999999853
Q ss_pred CCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183 80 AGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118 (145)
Q Consensus 80 ~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~ 118 (145)
.-+.+|+|++|+|+|..-|..+ .+|+.+.|.
T Consensus 125 ----~SaiiVlDK~G~V~F~k~G~Ls----~~Ev~qVi~ 155 (160)
T PF09695_consen 125 ----SSAIIVLDKQGKVQFVKEGALS----PAEVQQVIA 155 (160)
T ss_pred ----CceEEEEcCCccEEEEECCCCC----HHHHHHHHH
Confidence 2468999999999999988865 355555443
No 64
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.31 E-value=0.001 Score=45.34 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=48.4
Q ss_pred cCCcEEEEEeCCCHHH-HHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEE
Q psy17183 20 VSPFQIIAVSVDSHLA-HLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRS 98 (145)
Q Consensus 20 ~~gv~vi~VS~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~ 98 (145)
..++.++.++.+.... ..+|... .+ .+-+.....++++.||+. ..|+.+++|++|++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------~~~~~~~~~~l~~~~~v~------gtPt~~~~d~~G~~v~ 97 (112)
T PF13098_consen 38 KDDFQVIFVNIDDSRDESEAVLDF---DG-----------QKNVRLSNKELAQRYGVN------GTPTIVFLDKDGKIVY 97 (112)
T ss_dssp HCECEEEECESHSHHHHHHHHHSH---TC-----------HSSCHHHHHHHHHHTT--------SSSEEEECTTTSCEEE
T ss_pred hcCeEEEEEecCCccccccccccc---cc-----------chhhhHHHHHHHHHcCCC------ccCEEEEEcCCCCEEE
Confidence 3468899998876553 3344442 21 222233456899999988 3799999999999999
Q ss_pred EEeecCCCCCCHHHHHHHH
Q psy17183 99 MNVSDIQVGRNLKEILRQV 117 (145)
Q Consensus 99 ~~~~~~~~~~~~~ell~~i 117 (145)
...|..+ .+++++.|
T Consensus 98 ~~~G~~~----~~~l~~~L 112 (112)
T PF13098_consen 98 RIPGYLS----PEELLKML 112 (112)
T ss_dssp EEESS------HHHHHHHH
T ss_pred EecCCCC----HHHHHhhC
Confidence 8888754 57776654
No 65
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.25 E-value=0.0068 Score=47.22 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=80.6
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
+||..+..+.-.+ .-+..+++.+++||-.+.+...+|++. .+ + .||.+|.....+...|++.....
T Consensus 87 gCs~~~D~~~g~l--~hL~~rd~tfa~vSraP~~~i~afk~r---mG------W---~~pw~Ss~gs~Fn~D~~~~~~~~ 152 (211)
T PF05988_consen 87 GCSFWADHIDGAL--RHLHARDTTFAVVSRAPLEKIEAFKRR---MG------W---TFPWYSSYGSDFNYDFGVSFDEG 152 (211)
T ss_pred chhhhHhhhhhhH--HHHHhCCceEEEEeCCCHHHHHHHHHh---cC------C---CceEEEcCCCcccccccceeccC
Confidence 6999999995555 368899999999999999999999997 76 9 99999999999999999855322
Q ss_pred C-CcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccC-CcccCCCCCCC
Q psy17183 81 G-HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDST-DTQCPVNWTTG 137 (145)
Q Consensus 81 g-~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~-~~~~p~~w~~~ 137 (145)
+ .+-=++|+-|. |+|...+... +|-.+.+.-...=|..+..- .+.-|.+|-..
T Consensus 153 ~~~~g~svF~Rdg-~~VfhTyst~---~RG~e~l~~~~~lLDlTP~GR~E~~~~~W~r~ 207 (211)
T PF05988_consen 153 GEMPGLSVFLRDG-GRVFHTYSTY---GRGGERLMPTWNLLDLTPLGRQEDPPMDWWRR 207 (211)
T ss_pred CCceeEEEEEEcC-CEEEEEeecC---CCCchhhhhHHHHHhcCCCCCCCCCCCCcccc
Confidence 1 12225666665 8887665443 23334444333222222111 23377888654
No 66
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.10 E-value=0.0019 Score=45.20 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=36.0
Q ss_pred CchHHHHHhCCCccCCCCcceEEEEECCC-CcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 65 STHAISKTYGCYLSSAGHSLRAYYIIDKR-GYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 65 ~~~~va~~yg~~~~~~g~~~p~tfIID~d-G~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
...+++++|++. ..|+++++|++ |+++....|..+ .+++.+.|+.+.
T Consensus 72 ~~~~l~~~~~v~------~~Pt~~~~~~~gg~~~~~~~G~~~----~~~~~~~l~~~~ 119 (125)
T cd02951 72 SEKELARKYRVR------FTPTVIFLDPEGGKEIARLPGYLP----PDEFLAYLEYVQ 119 (125)
T ss_pred cHHHHHHHcCCc------cccEEEEEcCCCCceeEEecCCCC----HHHHHHHHHHHH
Confidence 457899999987 47999999999 899998888743 455556555543
No 67
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=97.07 E-value=0.011 Score=45.78 Aligned_cols=102 Identities=16% Similarity=0.201 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHhhhhhhh---cCCcEEEEEeCCC----HHHHHHHHH-HHhhcCCCCCCCCCCCCccEEe---cCchHHH
Q psy17183 2 DTKIACDVLKLVRKEILI---VSPFQIIAVSVDS----HLAHLAWTK-TLTATSSNRSAIDPSKIVPLLS---DSTHAIS 70 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~---~~gv~vi~VS~D~----~~~~~~~~~-~~~~~~~~~~~~~~~~~fplls---D~~~~va 70 (145)
|-.++..+.++. +++. ..+++++-||.|+ ++..+++.. . .. - .|--+. +...+++
T Consensus 83 CP~~l~~l~~~~--~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~---~~------~---~~~~ltg~~~~~~~~~ 148 (207)
T COG1999 83 CPTTLAELKALL--KKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELN---FD------P---RWIGLTGTPEQIEEVA 148 (207)
T ss_pred ChHHHHHHHHHH--HHhccccCCCEEEEEEEECCCCCCHHHHHHHhccc---CC------C---CeeeeeCCHHHHHHHH
Confidence 777777787777 4555 5668899999874 556666655 2 11 1 233333 3467889
Q ss_pred HHhCCCccC---C----CC--cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 71 KTYGCYLSS---A----GH--SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 71 ~~yg~~~~~---~----g~--~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
++|++.... . .. -.-..|+||++|++.....+..+ .+++++.|+.+-
T Consensus 149 k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~----~~~i~~~l~~l~ 204 (207)
T COG1999 149 KAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP----PEEIAADLKKLL 204 (207)
T ss_pred HHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCC----hHHHHHHHHHHh
Confidence 999998411 1 11 12458999999999877655432 688888887764
No 68
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.97 E-value=0.012 Score=40.04 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=28.5
Q ss_pred HHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 68 AISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 68 ~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
++++.|++. ..|+.+++ ++|+++..+.|.. ..++.+.+.+
T Consensus 62 ~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~~-----~~~l~~~~~~ 101 (103)
T cd02985 62 ELCRREKII------EVPHFLFY-KDGEKIHEEEGIG-----PDELIGDVLY 101 (103)
T ss_pred HHHHHcCCC------cCCEEEEE-eCCeEEEEEeCCC-----HHHHHHHHHh
Confidence 567778887 36875555 9999998888764 3667666543
No 69
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.76 E-value=0.013 Score=45.60 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=53.3
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
+|..+.|-++.+. ++ .|+.|++||.|.. . ++ .||-... +..+++.+|+.
T Consensus 134 ~C~~~~pil~~~~--~~---yg~~v~~vs~DG~-------------~------~~--~fp~~~~-~~g~~~~l~v~---- 182 (215)
T PF13728_consen 134 YCQQQAPILQQFA--DK---YGFSVIPVSLDGR-------------P------IP--SFPNPRP-DPGQAKRLGVK---- 182 (215)
T ss_pred hhHHHHHHHHHHH--HH---hCCEEEEEecCCC-------------C------Cc--CCCCCCC-CHHHHHHcCCC----
Confidence 4888888888876 23 3899999998851 1 11 3332221 66788899997
Q ss_pred CCcceEEEEECCCC-cEEEEEeecCCCCCCHHHHHHH
Q psy17183 81 GHSLRAYYIIDKRG-YLRSMNVSDIQVGRNLKEILRQ 116 (145)
Q Consensus 81 g~~~p~tfIID~dG-~I~~~~~~~~~~~~~~~ell~~ 116 (145)
..|++|++++++ ++.-+..|.. +.++|++-
T Consensus 183 --~~Pal~Lv~~~~~~~~pv~~G~~----s~~~L~~r 213 (215)
T PF13728_consen 183 --VTPALFLVNPNTKKWYPVSQGFM----SLDELEDR 213 (215)
T ss_pred --cCCEEEEEECCCCeEEEEeeecC----CHHHHHHh
Confidence 479999999998 5544445554 36777654
No 70
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=96.43 E-value=0.037 Score=38.17 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=36.8
Q ss_pred EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
+=.|....++++||+. ..|+++++ ++|+++....|.. +.+++.+.|++|
T Consensus 63 vd~d~~~~l~~~~~V~------~~Pt~~i~-~~g~~~~~~~G~~----~~~~l~~~i~~~ 111 (111)
T cd02963 63 VNAGHERRLARKLGAH------SVPAIVGI-INGQVTFYHDSSF----TKQHVVDFVRKL 111 (111)
T ss_pred EeccccHHHHHHcCCc------cCCEEEEE-ECCEEEEEecCCC----CHHHHHHHHhcC
Confidence 4456678899999997 47999999 5998877766653 357777777654
No 71
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.97 E-value=0.065 Score=42.99 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
.|..+.|-++.+. +..|+.|++||.|. .. ++ .||-.- .+...++.+|+..
T Consensus 164 ~C~~~apil~~fa-----~~ygi~v~~VS~DG-------------~~------~p--~fp~~~-~d~gqa~~l~v~~--- 213 (256)
T TIGR02739 164 ISQKMAPVIQAFA-----KEYGISVIPISVDG-------------TL------IP--GLPNSR-SDSGQAQHLGVKY--- 213 (256)
T ss_pred hhHHHHHHHHHHH-----HHhCCeEEEEecCC-------------CC------CC--CCCCcc-CChHHHHhcCCcc---
Confidence 4777777777776 24479999999885 11 22 344322 2455688899873
Q ss_pred CCcceEEEEECCC-CcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 81 GHSLRAYYIIDKR-GYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 81 g~~~p~tfIID~d-G~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
.|++|+++++ +++.-+..|.+ +.+++.+.|..
T Consensus 214 ---~Pal~Lv~~~t~~~~pv~~G~i----S~deL~~Ri~~ 246 (256)
T TIGR02739 214 ---FPALYLVNPKSQKMSPLAYGFI----SQDELKERILN 246 (256)
T ss_pred ---CceEEEEECCCCcEEEEeeccC----CHHHHHHHHHH
Confidence 7999999999 55544445554 36777655543
No 72
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=95.82 E-value=0.098 Score=35.34 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=32.1
Q ss_pred chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 66 THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
..+++++|++. ..|+ |++-++|+++....|. +..++++.|++|
T Consensus 60 ~~~~~~~~~v~------~~Pt-~~~~~~g~~~~~~~G~-----~~~~~~~~i~~~ 102 (102)
T cd02948 60 TIDTLKRYRGK------CEPT-FLFYKNGELVAVIRGA-----NAPLLNKTITEL 102 (102)
T ss_pred CHHHHHHcCCC------cCcE-EEEEECCEEEEEEecC-----ChHHHHHHHhhC
Confidence 66788999988 3685 4555899999888774 357788888764
No 73
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=95.66 E-value=0.15 Score=33.58 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=34.4
Q ss_pred EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183 61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV 117 (145)
Q Consensus 61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i 117 (145)
+=.|...++++.|++. ..|++++++ +|+++..+.|.. +.+++...|
T Consensus 50 vd~~~~~~l~~~~~i~------~~Pt~~~~~-~g~~~~~~~g~~----~~~~l~~~l 95 (96)
T cd02956 50 VNCDAQPQIAQQFGVQ------ALPTVYLFA-AGQPVDGFQGAQ----PEEQLRQML 95 (96)
T ss_pred EeccCCHHHHHHcCCC------CCCEEEEEe-CCEEeeeecCCC----CHHHHHHHh
Confidence 4466788899999987 479999996 999887776653 356666554
No 74
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=95.53 E-value=0.048 Score=40.72 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=37.2
Q ss_pred EEecCchHHHH-HhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 61 LLSDSTHAISK-TYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 61 llsD~~~~va~-~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
++.|..| +++ +|++... --+.+++|++|+|.|+.-|..+. .++.+++..|..
T Consensus 129 ~vlD~~g-vak~AWqL~e~-----~SaivVlDk~G~VkfvkeGaLt~-aevQ~Vi~ll~~ 181 (184)
T COG3054 129 FVLDSNG-VAKNAWQLKEE-----SSAVVVLDKDGRVKFVKEGALTQ-AEVQQVIDLLQK 181 (184)
T ss_pred eEEccch-hhhhhhccccc-----cceEEEEcCCCcEEEEecCCccH-HHHHHHHHHHHH
Confidence 8899999 555 9998753 35789999999999999887642 223444444433
No 75
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.33 E-value=0.14 Score=40.60 Aligned_cols=55 Identities=24% Similarity=0.414 Sum_probs=42.9
Q ss_pred CccEEecC-chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 58 IVPLLSDS-THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 58 ~fpllsD~-~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
.+|++.|. +....++||..- .| .||| ++|+|+|.- |+.|.+=+.+|+.+.|++.+
T Consensus 182 ~~pi~vD~mdN~~~~~YgA~P------eR-lyIi-~~gkv~Y~G-g~GP~~y~~~e~r~~L~~~~ 237 (237)
T PF00837_consen 182 QCPIVVDTMDNNFNKAYGALP------ER-LYII-QDGKVVYKG-GPGPFGYSPEELREWLEKYK 237 (237)
T ss_pred CCCEEEEccCCHHHHHhCCCc------ce-EEEE-ECCEEEEeC-CCCCCcCCHHHHHHHHHhcC
Confidence 89999996 999999999883 23 5666 599999874 34456668899999988753
No 76
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.32 E-value=0.18 Score=40.36 Aligned_cols=83 Identities=17% Similarity=0.295 Sum_probs=54.4
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSA 80 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~ 80 (145)
+|..+.|-++.+. +..|+.|++||.|.. . +| .||--- ++...+..+|+..
T Consensus 157 ~C~~~aPil~~fa-----~~yg~~v~~VS~DG~-------------~------~p--~fp~~~-~d~gqa~~l~v~~--- 206 (248)
T PRK13703 157 IDGQLAQVINDFR-----DTYGLSVIPVSVDGV-------------I------NP--LLPDSR-TDQGQAQRLGVKY--- 206 (248)
T ss_pred hhHHHHHHHHHHH-----HHhCCeEEEEecCCC-------------C------CC--CCCCCc-cChhHHHhcCCcc---
Confidence 4778888887776 245899999998852 1 11 344321 2334457888873
Q ss_pred CCcceEEEEECCCC-cEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 81 GHSLRAYYIIDKRG-YLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 81 g~~~p~tfIID~dG-~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
.|++|+++++. ++.-+..|.++ .+++.+.|...
T Consensus 207 ---~PAl~Lv~~~t~~~~pv~~G~iS----~deL~~Ri~~v 240 (248)
T PRK13703 207 ---FPALMLVDPKSGSVRPLSYGFIT----QDDLAKRFLNV 240 (248)
T ss_pred ---cceEEEEECCCCcEEEEeeccCC----HHHHHHHHHHH
Confidence 69999999995 66555556543 67777665443
No 77
>PRK09381 trxA thioredoxin; Provisional
Probab=95.31 E-value=0.25 Score=33.31 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=35.7
Q ss_pred EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
+-.|....+++.|++. ..|+++++ ++|+++....|..+ .+++...|+.
T Consensus 59 vd~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~i~~ 106 (109)
T PRK09381 59 LNIDQNPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGALS----KGQLKEFLDA 106 (109)
T ss_pred EECCCChhHHHhCCCC------cCCEEEEE-eCCeEEEEecCCCC----HHHHHHHHHH
Confidence 4466678888999987 47998888 79999988877643 5666666554
No 78
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=95.16 E-value=0.19 Score=33.18 Aligned_cols=35 Identities=6% Similarity=0.063 Sum_probs=26.9
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecC
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDI 104 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~ 104 (145)
.|....+++.|++. ..|+.+++ ++|+++..+.|..
T Consensus 59 ~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~~ 93 (102)
T cd03005 59 CTQHRELCSEFQVR------GYPTLLLF-KDGEKVDKYKGTR 93 (102)
T ss_pred CCCChhhHhhcCCC------cCCEEEEE-eCCCeeeEeeCCC
Confidence 44566788889887 47999999 7898887777764
No 79
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=94.91 E-value=0.33 Score=38.80 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=33.9
Q ss_pred CccEEecC--chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCC
Q psy17183 58 IVPLLSDS--THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQ 105 (145)
Q Consensus 58 ~fpllsD~--~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~ 105 (145)
.|-++.+. .-.+-+.+|+.... .-.+||||++|+|||.-.|...
T Consensus 193 ~Yf~~~~~~~~~~iRe~Lgi~N~~----~GYvyLVD~~grIRWagsG~At 238 (252)
T PF05176_consen 193 RYFIVYRGQLSDDIREALGINNSY----VGYVYLVDPNGRIRWAGSGPAT 238 (252)
T ss_pred eEEEEeCCcccHHHHHHhCCCCCC----cCeEEEECCCCeEEeCccCCCC
Confidence 56555544 67889999998753 3478999999999998877643
No 80
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=94.83 E-value=0.47 Score=31.43 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=30.8
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~ 118 (145)
.|....+++.|++. ..|+++++ ++|++ ..+.|. ++.+++.+.|+
T Consensus 57 ~~~~~~~~~~~~i~------~~Pt~~~~-~~g~~-~~~~G~----~~~~~l~~~i~ 100 (101)
T cd02994 57 VTQEPGLSGRFFVT------ALPTIYHA-KDGVF-RRYQGP----RDKEDLISFIE 100 (101)
T ss_pred ccCCHhHHHHcCCc------ccCEEEEe-CCCCE-EEecCC----CCHHHHHHHHh
Confidence 45566788889887 47999887 88986 445554 45677766654
No 81
>KOG4498|consensus
Probab=94.75 E-value=0.14 Score=39.31 Aligned_cols=104 Identities=15% Similarity=0.102 Sum_probs=70.2
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc--
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS-- 78 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~-- 78 (145)
.|..++.+|.+.. +-+++.|+.+|+|-..+......|... .. . .=.+..|++..+-..++....
T Consensus 65 lCR~~aadLa~l~--~~ld~~Gv~Li~vg~g~~~~~~~f~~q---~~------f---~gevylD~~~~~Y~~le~k~~~~ 130 (197)
T KOG4498|consen 65 LCREEAADLASLK--DLLDELGVVLIAVGPGSHVQFEDFWDQ---TY------F---SGEVYLDPHRGFYKPLEFKRAEM 130 (197)
T ss_pred EeHHHHHHHHHHH--HHHHHhCCEEEEEeccceeecchhhcc---cC------c---ceeEEEcCccceechhhhhcccc
Confidence 3899999999984 688999999999976555445555442 21 2 335777776665544443221
Q ss_pred ----------------------C--CCCcceEEEEECCCCcEEEEEeecCCCC-CCHHHHHHHHH
Q psy17183 79 ----------------------S--AGHSLRAYYIIDKRGYLRSMNVSDIQVG-RNLKEILRQVE 118 (145)
Q Consensus 79 ----------------------~--~g~~~p~tfIID~dG~I~~~~~~~~~~~-~~~~ell~~i~ 118 (145)
. .+.....++++-+.|+|.+.+......+ .+.+++++++.
T Consensus 131 g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~gD~~~i~~Vl~v~~ 195 (197)
T KOG4498|consen 131 GFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETGDHVPIDSVLQVVG 195 (197)
T ss_pred cccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCCCCcCHHHHHHHhh
Confidence 0 1235788999988889999998654322 26888888764
No 82
>KOG2501|consensus
Probab=94.44 E-value=0.21 Score=37.27 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHhhhhhhhcC--CcEEEEEeCCC-HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCcc
Q psy17183 2 DTKIACDVLKLVRKEILIVS--PFQIIAVSVDS-HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLS 78 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~--gv~vi~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~ 78 (145)
|..=.|.+.+.| ++.++. .++||-||.|. .++..++... +. | ++. -.|+-.|...+..+.|++.
T Consensus 48 CR~FTP~Lk~fY--e~l~~~~~~fEVvfVS~D~~~~~~~~y~~~---~~--~--~W~--~iPf~d~~~~~l~~ky~v~-- 114 (157)
T KOG2501|consen 48 CRDFTPILKDFY--EELKDNAAPFEVVFVSSDRDEESLDEYMLE---HH--G--DWL--AIPFGDDLIQKLSEKYEVK-- 114 (157)
T ss_pred hhhCCchHHHHH--HHHHhcCCceEEEEEecCCCHHHHHHHHHh---cC--C--CeE--EecCCCHHHHHHHHhcccC--
Confidence 333345666777 455543 48899999985 4455666554 43 1 110 2344455678889999988
Q ss_pred CCCCcceEEEEECCCCcEEEEE
Q psy17183 79 SAGHSLRAYYIIDKRGYLRSMN 100 (145)
Q Consensus 79 ~~g~~~p~tfIID~dG~I~~~~ 100 (145)
.+|+-.++.++|+++...
T Consensus 115 ----~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 115 ----GIPALVILKPDGTVVTED 132 (157)
T ss_pred ----cCceeEEecCCCCEehHh
Confidence 479999999999887554
No 83
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=94.11 E-value=0.072 Score=35.82 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=32.7
Q ss_pred chHHHHHhCCCccCCCCcceEEEEECC-CCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183 66 THAISKTYGCYLSSAGHSLRAYYIIDK-RGYLRSMNVSDIQVGRNLKEILRQV 117 (145)
Q Consensus 66 ~~~va~~yg~~~~~~g~~~p~tfIID~-dG~I~~~~~~~~~~~~~~~ell~~i 117 (145)
..+++++|++. ..|+++++++ +|++.....|.. +.+++.+.|
T Consensus 61 ~~~~~~~~~i~------~~Pti~~~~~~~g~~~~~~~G~~----~~~~l~~~l 103 (104)
T cd02953 61 ITALLKRFGVF------GPPTYLFYGPGGEPEPLRLPGFL----TADEFLEAL 103 (104)
T ss_pred HHHHHHHcCCC------CCCEEEEECCCCCCCCccccccc----CHHHHHHHh
Confidence 35788889887 4799999999 999988877764 356666655
No 84
>KOG1651|consensus
Probab=93.73 E-value=0.58 Score=35.31 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe--cCchH----HH
Q psy17183 5 IACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS--DSTHA----IS 70 (145)
Q Consensus 5 e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls--D~~~~----va 70 (145)
+-..|..++ ++|+.+|++|+|.-++ +-+....|+.. +.+ . .|||.. |-+|. +-
T Consensus 52 ~Y~~l~~L~--~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~--r~~------~---~f~if~KidVNG~~~~Ply 118 (171)
T KOG1651|consen 52 QYTELNELY--EKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKV--RYG------A---EFPIFQKIDVNGDNADPLY 118 (171)
T ss_pred cchhHHHHH--HHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHh--ccC------C---CCccEeEEecCCCCCchHH
Confidence 556788888 6999999999999654 23345566653 344 5 788774 33333 22
Q ss_pred HHhCCCcc-CCCCc---ceEEEEECCCCcEEEEEe
Q psy17183 71 KTYGCYLS-SAGHS---LRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 71 ~~yg~~~~-~~g~~---~p~tfIID~dG~I~~~~~ 101 (145)
+-+.-... ..|.. +=+-|+||++|.|+.++-
T Consensus 119 kfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 119 KFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 21111100 00111 224699999999998874
No 85
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=93.73 E-value=0.18 Score=35.84 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=37.6
Q ss_pred EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
+=.|.+.++|+.||+. ..|+.+++ ++|+++. +.|. ++.+++.+.|+++
T Consensus 71 VD~d~~~~La~~~~I~------~iPTl~lf-k~G~~v~-~~G~----~~~~~l~~~l~~~ 118 (120)
T cd03065 71 VDSKKDAKVAKKLGLD------EEDSIYVF-KDDEVIE-YDGE----FAADTLVEFLLDL 118 (120)
T ss_pred EeCCCCHHHHHHcCCc------cccEEEEE-ECCEEEE-eeCC----CCHHHHHHHHHHH
Confidence 4477889999999998 47999999 7999875 6665 3467888887765
No 86
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.46 E-value=0.25 Score=33.92 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=34.8
Q ss_pred chHHHHHhCCCccCCCCcceEEEEECC-CCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 66 THAISKTYGCYLSSAGHSLRAYYIIDK-RGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 66 ~~~va~~yg~~~~~~g~~~p~tfIID~-dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
..++++.|++. ..|+.++||+ +|++++...|..+ .++++..|+..
T Consensus 65 ~~~~~~~~~~~------~~P~~~~i~~~~g~~l~~~~G~~~----~~~f~~~L~~~ 110 (114)
T cd02958 65 GQRFLQSYKVD------KYPHIAIIDPRTGEVLKVWSGNIT----PEDLLSQLIEF 110 (114)
T ss_pred HHHHHHHhCcc------CCCeEEEEeCccCcEeEEEcCCCC----HHHHHHHHHHH
Confidence 34778888876 3799999999 8999998888754 56777766543
No 87
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.30 E-value=0.41 Score=37.80 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCY 76 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~ 76 (145)
+|+.-+..+--.. .-+...++.+++||--+.+...+++.+ .+ + .||.+|...+.+-+.|.+.
T Consensus 93 gCS~laD~~dGa~--~HL~~~dv~lv~VsRAPl~~l~~~k~r---mG------W---~f~w~Ss~~s~Fn~Df~vs 154 (247)
T COG4312 93 GCSFLADHWDGAV--AHLEHHDVTLVAVSRAPLEELVAYKRR---MG------W---QFPWVSSTDSDFNRDFQVS 154 (247)
T ss_pred chhhHHhhhhhhh--hhHhhcCceEEEEecCcHHHHHHHHHh---cC------C---cceeEeccCcccccccccc
Confidence 4666666664444 257788999999999999999999886 66 9 9999999999999999764
No 88
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=93.06 E-value=0.75 Score=31.05 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=27.5
Q ss_pred CchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHH
Q psy17183 65 STHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQ 116 (145)
Q Consensus 65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~ 116 (145)
....++++|++. ..|++++++ +| .+..+.|. ++.+++.+.
T Consensus 60 ~~~~l~~~~~V~------~~PT~~lf~-~g-~~~~~~G~----~~~~~l~~f 99 (100)
T cd02999 60 IKPSLLSRYGVV------GFPTILLFN-ST-PRVRYNGT----RTLDSLAAF 99 (100)
T ss_pred CCHHHHHhcCCe------ecCEEEEEc-CC-ceeEecCC----CCHHHHHhh
Confidence 356789999987 479999996 45 55566665 445666543
No 89
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=92.79 E-value=0.34 Score=35.14 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=55.8
Q ss_pred hhhcCCcEEEEEeCCC---HHH------HHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEE
Q psy17183 17 ILIVSPFQIIAVSVDS---HLA------HLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAY 87 (145)
Q Consensus 17 ~f~~~gv~vi~VS~D~---~~~------~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~t 87 (145)
+....|..|+-++.|+ +++ ..+.++. +. +. ++ +-+-+=.|.+.+++..||+. ..|+.
T Consensus 30 ~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e---~~--~~-~v--~~akVDiD~~~~LA~~fgV~------siPTL 95 (132)
T PRK11509 30 WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLRE---FP--DY-TW--QVAIADLEQSEAIGDRFGVF------RFPAT 95 (132)
T ss_pred HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHH---hc--CC-ce--EEEEEECCCCHHHHHHcCCc------cCCEE
Confidence 3456677888887774 222 2333333 32 10 02 02334467899999999998 47998
Q ss_pred EEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 88 YIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 88 fIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
+++ ++|+++....|..+ -+++++.|+++-
T Consensus 96 l~F-kdGk~v~~i~G~~~----k~~l~~~I~~~L 124 (132)
T PRK11509 96 LVF-TGGNYRGVLNGIHP----WAELINLMRGLV 124 (132)
T ss_pred EEE-ECCEEEEEEeCcCC----HHHHHHHHHHHh
Confidence 888 99999999888643 467777766543
No 90
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=92.58 E-value=0.97 Score=31.82 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=34.3
Q ss_pred HHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 68 AISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 68 ~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
.+.+.|++.. ..-+.++|++||.|...+..+. +.+++.+.|+++.
T Consensus 68 ~lr~~l~~~~-----~~f~~vLiGKDG~vK~r~~~p~----~~~~lf~~ID~MP 112 (118)
T PF13778_consen 68 ALRKRLRIPP-----GGFTVVLIGKDGGVKLRWPEPI----DPEELFDTIDAMP 112 (118)
T ss_pred HHHHHhCCCC-----CceEEEEEeCCCcEEEecCCCC----CHHHHHHHHhCCc
Confidence 6777787763 1357899999999998765543 5899999998864
No 91
>KOG2792|consensus
Probab=91.74 E-value=0.34 Score=39.05 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHhhhhhhhc-CCcE--EEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHh
Q psy17183 1 MDTKIACDVLKLVRKEILIV-SPFQ--IIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTY 73 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~-~gv~--vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~y 73 (145)
.|-.|+-.+.+.. +++.+ .|+. -|.||+| +++..+++.+. .+ +.+ + .+.=-.+.=.+++++|
T Consensus 154 ICPdELeKm~~~V--d~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e---F~-pkl--l---GLTGT~eqvk~vak~y 222 (280)
T KOG2792|consen 154 ICPDELEKMSAVV--DEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSE---FH-PKL--L---GLTGTTEQVKQVAKKY 222 (280)
T ss_pred cChHHHHHHHHHH--HHHhccCCCCccceEEEeCcccCCHHHHHHHHHh---cC-hhh--h---cccCCHHHHHHHHHHh
Confidence 4888999998888 56654 3332 4777776 57778887765 32 111 2 2222244567899999
Q ss_pred CCCccC----CC---C--cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183 74 GCYLSS----AG---H--SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV 117 (145)
Q Consensus 74 g~~~~~----~g---~--~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i 117 (145)
.|+.+. .+ + -.-..|+|||+|..+-.+ |- .++.+++.+.|
T Consensus 223 RVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~-Gr---N~~~~~~~~~I 271 (280)
T KOG2792|consen 223 RVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYY-GR---NYDADELADSI 271 (280)
T ss_pred EEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhh-cc---cCCHHHHHHHH
Confidence 998642 01 1 123579999999876432 22 23455655544
No 92
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=91.62 E-value=1.9 Score=31.78 Aligned_cols=40 Identities=8% Similarity=0.027 Sum_probs=27.5
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeec
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~ 103 (145)
.|...+++++|++.....=...|+.++. ++|+.+....|.
T Consensus 88 vd~~~~la~~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G~ 127 (152)
T cd02962 88 IGRFPNVAEKFRVSTSPLSKQLPTIILF-QGGKEVARRPYY 127 (152)
T ss_pred CCCCHHHHHHcCceecCCcCCCCEEEEE-ECCEEEEEEecc
Confidence 5667788888887621000126988888 699999888873
No 93
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=91.44 E-value=1.8 Score=28.97 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=30.2
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
.+....+++.|++. ..|+.++++ +|. ...+.|. ++.+++.+.+++
T Consensus 58 ~~~~~~~~~~~~I~------~~Pt~~l~~-~~~-~~~~~G~----~~~~~l~~~~~~ 102 (104)
T cd03000 58 ATAYSSIASEFGVR------GYPTIKLLK-GDL-AYNYRGP----RTKDDIVEFANR 102 (104)
T ss_pred CccCHhHHhhcCCc------cccEEEEEc-CCC-ceeecCC----CCHHHHHHHHHh
Confidence 34467888999987 479999994 443 3444453 346777776665
No 94
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=91.38 E-value=1.5 Score=29.25 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=29.0
Q ss_pred chHHHHHhCCCccCCCCcceEEEEECCCCc----EEEEEeecCCCCCCHHHHHHHH
Q psy17183 66 THAISKTYGCYLSSAGHSLRAYYIIDKRGY----LRSMNVSDIQVGRNLKEILRQV 117 (145)
Q Consensus 66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~----I~~~~~~~~~~~~~~~ell~~i 117 (145)
..++++.|++. ..|+.+++++.+. +...+.|. ++.+++.+.|
T Consensus 63 ~~~~~~~~~i~------~~Pt~~~~~~~~~~~~~~~~~~~G~----~~~~~l~~fi 108 (109)
T cd03002 63 NKPLCGKYGVQ------GFPTLKVFRPPKKASKHAVEDYNGE----RSAKAIVDFV 108 (109)
T ss_pred cHHHHHHcCCC------cCCEEEEEeCCCcccccccccccCc----cCHHHHHHHh
Confidence 67889999987 3799999988873 33333333 4567776655
No 95
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=91.35 E-value=2 Score=34.09 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHhhhhhhhcCCc---EEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe-c-CchHHHHHhCC
Q psy17183 1 MDTKIACDVLKLVRKEILIVSPF---QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS-D-STHAISKTYGC 75 (145)
Q Consensus 1 ~~t~e~~~~~~~~~~~~f~~~gv---~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls-D-~~~~va~~yg~ 75 (145)
.|-.++..|..+. .+|+..|+ .++.||--...+...+.+- +++ + +..|||.. | ..-.|-..++.
T Consensus 40 ~c~~qa~~le~Lr--~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l-~~r-------~-~~~ipVyqq~~~q~dvW~~L~G 108 (238)
T PF04592_consen 40 FCLLQASRLEDLR--EKLENEGLSNISFMVVNHQGEHSRLKYWEL-KRR-------V-SEHIPVYQQDENQPDVWELLNG 108 (238)
T ss_pred HHHHHHHHHHHHH--HHHHHCCCCceEEEEEcCCCcchhHHHHHH-HHh-------C-CCCCceecCCccccCHHHHhCC
Confidence 3778888888887 57776654 6788876443333322221 112 3 00499985 3 46677777766
Q ss_pred CccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 76 ~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
.. =-.||+|+-|++.|...-+.+. -.+.-+.++|+.
T Consensus 109 ~k-------dD~~iyDRCGrL~~~i~~P~S~-l~~~~ve~Ai~~ 144 (238)
T PF04592_consen 109 SK-------DDFLIYDRCGRLTYHIPLPYSF-LQFPYVEAAIKS 144 (238)
T ss_pred Cc-------CcEEEEeccCcEEEEecCcHHH-hcCHHHHHHHHH
Confidence 53 3679999999999987654332 123455555544
No 96
>PRK10996 thioredoxin 2; Provisional
Probab=90.27 E-value=0.93 Score=32.48 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=35.3
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
.|...++++.|++. ..|+.+++ ++|+++....|.. +.+++.+.|+++
T Consensus 92 ~~~~~~l~~~~~V~------~~Ptlii~-~~G~~v~~~~G~~----~~e~l~~~l~~~ 138 (139)
T PRK10996 92 TEAERELSARFRIR------SIPTIMIF-KNGQVVDMLNGAV----PKAPFDSWLNEA 138 (139)
T ss_pred CCCCHHHHHhcCCC------ccCEEEEE-ECCEEEEEEcCCC----CHHHHHHHHHHh
Confidence 56678999999997 37988777 6999988877764 356677776653
No 97
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=90.21 E-value=2.3 Score=28.76 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=28.6
Q ss_pred ecC-chHHHH-HhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHH
Q psy17183 63 SDS-THAISK-TYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQ 116 (145)
Q Consensus 63 sD~-~~~va~-~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~ 116 (145)
+|. ...+++ .|++. ..|+.++++++++..+.+.|. .++.+.+...
T Consensus 62 ~d~~~~~~~~~~~~v~------~~Pti~~f~~~~~~~~~y~g~---~~~~~~l~~f 108 (109)
T cd02993 62 ADGEQREFAKEELQLK------SFPTILFFPKNSRQPIKYPSE---QRDVDSLLMF 108 (109)
T ss_pred CCccchhhHHhhcCCC------cCCEEEEEcCCCCCceeccCC---CCCHHHHHhh
Confidence 444 355665 47876 379999998887766555443 2566666543
No 98
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=90.09 E-value=0.9 Score=29.60 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=34.0
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
.|....+++.|++. ..|+.+++++++. ...+.|. .+.+++...|++
T Consensus 55 ~~~~~~~~~~~~i~------~~P~~~~~~~~~~-~~~~~g~----~~~~~l~~~i~~ 100 (102)
T TIGR01126 55 ATAEKDLASRFGVS------GFPTIKFFPKGKK-PVDYEGG----RDLEAIVEFVNE 100 (102)
T ss_pred ccchHHHHHhCCCC------cCCEEEEecCCCc-ceeecCC----CCHHHHHHHHHh
Confidence 56788899999987 3799999988887 4555554 346677776654
No 99
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=89.76 E-value=1.2 Score=28.79 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=35.3
Q ss_pred EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
+-.|.+..+++.||+. ..|+.+++ ++|++.....|.. +.+++.+.|++
T Consensus 52 vd~~~~~~~~~~~~v~------~~P~~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~ 99 (101)
T TIGR01068 52 LNVDENPDIAAKYGIR------SIPTLLLF-KNGKEVDRSVGAL----PKAALKQLINK 99 (101)
T ss_pred EECCCCHHHHHHcCCC------cCCEEEEE-eCCcEeeeecCCC----CHHHHHHHHHh
Confidence 3356788889999998 47999999 7888876666653 35677776654
No 100
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=89.69 E-value=1 Score=29.85 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=32.2
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV 117 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i 117 (145)
.|.+.+++..|++. ..|+.+|+ ++|+++....|..+ .+++.+.|
T Consensus 53 ~d~~~~l~~~~~v~------~vPt~~i~-~~g~~v~~~~g~~~----~~~~~~~l 96 (97)
T cd02949 53 IDEDQEIAEAAGIM------GTPTVQFF-KDKELVKEISGVKM----KSEYREFI 96 (97)
T ss_pred CCCCHHHHHHCCCe------eccEEEEE-ECCeEEEEEeCCcc----HHHHHHhh
Confidence 44577899999987 47999999 58999888777543 45555544
No 101
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=89.22 E-value=2.3 Score=27.76 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=30.2
Q ss_pred ecC-chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHH
Q psy17183 63 SDS-THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILR 115 (145)
Q Consensus 63 sD~-~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~ 115 (145)
.+. ...+++.|++. ..|+.+++++.|+....+.|. ++.+++.+
T Consensus 60 ~~~~~~~~~~~~~i~------~~P~~~~~~~~~~~~~~~~g~----~~~~~l~~ 103 (105)
T cd02998 60 ADEANKDLAKKYGVS------GFPTLKFFPKGSTEPVKYEGG----RDLEDLVK 103 (105)
T ss_pred CCCcchhhHHhCCCC------CcCEEEEEeCCCCCccccCCc----cCHHHHHh
Confidence 345 67899999987 479999998887666555443 44566554
No 102
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=89.20 E-value=2.9 Score=27.65 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=29.2
Q ss_pred EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHH
Q psy17183 61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEIL 114 (145)
Q Consensus 61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell 114 (145)
+=.|....+++.|++. ..|+.+++ ++|+....+.|. ++.+++.
T Consensus 56 vd~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~----~~~~~l~ 98 (101)
T cd03003 56 VNCGDDRMLCRSQGVN------SYPSLYVF-PSGMNPEKYYGD----RSKESLV 98 (101)
T ss_pred EeCCccHHHHHHcCCC------ccCEEEEE-cCCCCcccCCCC----CCHHHHH
Confidence 3356677888999887 37998888 789876554443 3445544
No 103
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=88.68 E-value=0.6 Score=41.39 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=35.5
Q ss_pred chHHHHHhCCCccCCCCcceEEEEECCCCcEE--EEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 66 THAISKTYGCYLSSAGHSLRAYYIIDKRGYLR--SMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~--~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
..+++++|++. ..|+++++|++|+++ ....|.. +.+++++.+++++
T Consensus 523 ~~~l~~~~~v~------g~Pt~~~~~~~G~~i~~~r~~G~~----~~~~f~~~L~~~~ 570 (571)
T PRK00293 523 DVALLKHYNVL------GLPTILFFDAQGQEIPDARVTGFM----DAAAFAAHLRQLQ 570 (571)
T ss_pred hHHHHHHcCCC------CCCEEEEECCCCCCcccccccCCC----CHHHHHHHHHHhc
Confidence 36889999987 379999999999985 4555553 4678888888765
No 104
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=88.41 E-value=0.61 Score=29.89 Aligned_cols=44 Identities=9% Similarity=0.153 Sum_probs=31.0
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHH
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQ 116 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~ 116 (145)
.|.+..+++.|++. ..|+.++++++|+....+.+. .+.+++++.
T Consensus 57 ~~~~~~~~~~~~i~------~~Pt~~~~~~~~~~~~~~~g~----~~~~~i~~~ 100 (101)
T cd02961 57 CTANNDLCSEYGVR------GYPTIKLFPNGSKEPVKYEGP----RTLESLVEF 100 (101)
T ss_pred ccchHHHHHhCCCC------CCCEEEEEcCCCcccccCCCC----cCHHHHHhh
Confidence 45578999999997 379999998887555444443 346666543
No 105
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=88.34 E-value=5.1 Score=25.89 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=34.6
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
.|....+++.|++. ..|+.+++ ++|+......|. ++.++|.+.|+.
T Consensus 57 ~~~~~~l~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~ 102 (103)
T PF00085_consen 57 CDENKELCKKYGVK------SVPTIIFF-KNGKEVKRYNGP----RNAESLIEFIEK 102 (103)
T ss_dssp TTTSHHHHHHTTCS------SSSEEEEE-ETTEEEEEEESS----SSHHHHHHHHHH
T ss_pred hhccchhhhccCCC------CCCEEEEE-ECCcEEEEEECC----CCHHHHHHHHHc
Confidence 44577899999998 37999988 778777766665 357888887763
No 106
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=87.29 E-value=1.5 Score=30.63 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhhhhhhhcCCcEEEEEeCC--------CHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe
Q psy17183 3 TKIACDVLKLVRKEILIVSPFQIIAVSVD--------SHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS 63 (145)
Q Consensus 3 t~e~~~~~~~~~~~~f~~~gv~vi~VS~D--------~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls 63 (145)
|.+...|++++ ++|+.+|++|+|.-.+ +.+..++|+.. +.+ . .|||..
T Consensus 36 t~qy~~L~~L~--~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~--~~~------~---~F~vf~ 91 (108)
T PF00255_consen 36 TKQYKQLNELY--EKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKE--KFG------V---TFPVFE 91 (108)
T ss_dssp HHHHHHHHHHH--HHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCH--CHT----------SSEEBS
T ss_pred ccccHHHHHHH--HHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHh--ccC------C---cccceE
Confidence 55888999999 6999999999999543 35556666664 133 6 898864
No 107
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=86.96 E-value=2 Score=30.16 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=32.5
Q ss_pred cEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCC
Q psy17183 60 PLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQ 105 (145)
Q Consensus 60 pllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~ 105 (145)
-+-.|...+++..|++. ++|+.+++ ++|+++....|..+
T Consensus 66 kVdid~~~~la~~f~V~------sIPTli~f-kdGk~v~~~~G~~~ 104 (111)
T cd02965 66 VVGRADEQALAARFGVL------RTPALLFF-RDGRYVGVLAGIRD 104 (111)
T ss_pred EEECCCCHHHHHHcCCC------cCCEEEEE-ECCEEEEEEeCccC
Confidence 46677888999999998 47988888 89999999888643
No 108
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=86.54 E-value=3.8 Score=29.10 Aligned_cols=37 Identities=5% Similarity=-0.117 Sum_probs=26.9
Q ss_pred ceEEEEECCCCcEEEEEeecCCC----CCCHHHHHHHHHhc
Q psy17183 84 LRAYYIIDKRGYLRSMNVSDIQV----GRNLKEILRQVEAF 120 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~~~~~~~----~~~~~ell~~i~~l 120 (145)
.|+++++|++|++++...+-.+. +..+.++++.|+.+
T Consensus 81 ~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd02955 81 WPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIREL 121 (124)
T ss_pred CCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHH
Confidence 69999999999999988654221 23567777776543
No 109
>KOG0910|consensus
Probab=84.47 E-value=2 Score=31.88 Aligned_cols=51 Identities=12% Similarity=0.209 Sum_probs=38.5
Q ss_pred ccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 59 VPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 59 fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
|.+=.|...+++..|++. +.|+++++ ++|..+-..+|..+ .+.+...|+++
T Consensus 97 ~kvdtD~~~ela~~Y~I~------avPtvlvf-knGe~~d~~vG~~~----~~~l~~~i~k~ 147 (150)
T KOG0910|consen 97 YKVDTDEHPELAEDYEIS------AVPTVLVF-KNGEKVDRFVGAVP----KEQLRSLIKKF 147 (150)
T ss_pred EEEccccccchHhhccee------eeeEEEEE-ECCEEeeeecccCC----HHHHHHHHHHH
Confidence 345578889999999998 58999999 89999888887654 45555555544
No 110
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=83.80 E-value=2.1 Score=28.40 Aligned_cols=46 Identities=4% Similarity=-0.061 Sum_probs=32.4
Q ss_pred EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHH
Q psy17183 61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILR 115 (145)
Q Consensus 61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~ 115 (145)
+=.|...++++.|++. ..|+.+++.+.|+....+.|... +.+++.+
T Consensus 57 vd~~~~~~~~~~~~i~------~~Pt~~~~~~g~~~~~~~~G~~~---~~~~l~~ 102 (104)
T cd03004 57 VDCQKYESLCQQANIR------AYPTIRLYPGNASKYHSYNGWHR---DADSILE 102 (104)
T ss_pred EECCchHHHHHHcCCC------cccEEEEEcCCCCCceEccCCCC---CHHHHHh
Confidence 3356678899999987 47999999766587777766532 2455554
No 111
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=83.79 E-value=2.8 Score=27.16 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=30.8
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV 117 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i 117 (145)
.+...++++.|++. ..|+.+++ ++|+++....|.. .+++.+.|
T Consensus 54 ~~~~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~g~~-----~~~l~~~~ 96 (97)
T cd02984 54 AEELPEISEKFEIT------AVPTFVFF-RNGTIVDRVSGAD-----PKELAKKV 96 (97)
T ss_pred cccCHHHHHhcCCc------cccEEEEE-ECCEEEEEEeCCC-----HHHHHHhh
Confidence 34567889999987 37998888 5899988877752 35555544
No 112
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=83.71 E-value=2.3 Score=28.53 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=32.2
Q ss_pred EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEE-EEEeecCCCCCCHHHHHHH
Q psy17183 61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQ 116 (145)
Q Consensus 61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~-~~~~~~~~~~~~~~ell~~ 116 (145)
+=+|...+++++||+. ..|+.++. ++|++. ..+.|. ++.+++...
T Consensus 62 vd~d~~~~l~~~~~v~------~~Ptl~~~-~~g~~~~~~~~g~----~~~~~l~~f 107 (108)
T cd02996 62 VDCDKESDIADRYRIN------KYPTLKLF-RNGMMMKREYRGQ----RSVEALAEF 107 (108)
T ss_pred EECCCCHHHHHhCCCC------cCCEEEEE-eCCcCcceecCCC----CCHHHHHhh
Confidence 4478889999999998 47999999 789853 333333 556766654
No 113
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=81.62 E-value=2.7 Score=29.64 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=38.4
Q ss_pred ccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCC------CCCHHHHHHHHHh
Q psy17183 59 VPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQV------GRNLKEILRQVEA 119 (145)
Q Consensus 59 fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~------~~~~~ell~~i~~ 119 (145)
+-+=.|...++++.||+. ..|+.+++ ++|+++....|..+. -.+-+++++.++-
T Consensus 50 ~kVDvD~~~~la~~~~V~------~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02954 50 YLVDIDEVPDFNKMYELY------DPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIET 109 (114)
T ss_pred EEEECCCCHHHHHHcCCC------CCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHH
Confidence 445577899999999998 47998888 899999999875321 1234555555543
No 114
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=81.40 E-value=15 Score=25.60 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcc
Q psy17183 5 IACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSL 84 (145)
Q Consensus 5 e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~ 84 (145)
-...++++. +++++.+..=+.||+++.....+..+- - | ..+++-....++++.+|+.. +
T Consensus 36 S~~WL~~~~--~~L~~l~AvGlVVnV~t~~~l~~Lr~l---a--------p--gl~l~P~sgddLa~rL~l~h------Y 94 (105)
T TIGR03765 36 SRQWLQQNA--AALKSLGAVGLVVNVETAAALQRLRAL---A--------P--GLPLLPVSGDDLAERLGLRH------Y 94 (105)
T ss_pred HHHHHHHHH--HHHHHCCCeEEEEecCCHHHHHHHHHH---c--------C--CCcccCCCHHHHHHHhCCCc------c
Confidence 345677777 689999999999999998888776553 1 1 56777778889999998862 2
Q ss_pred eEEEEECCCC
Q psy17183 85 RAYYIIDKRG 94 (145)
Q Consensus 85 p~tfIID~dG 94 (145)
| ++|..+|
T Consensus 95 P--vLit~tg 102 (105)
T TIGR03765 95 P--VLITATG 102 (105)
T ss_pred c--EEEecCc
Confidence 3 6777776
No 115
>KOG0907|consensus
Probab=81.07 E-value=15 Score=25.30 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=34.0
Q ss_pred ecCc--hHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 63 SDST--HAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 63 sD~~--~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
.|-+ .++++.|++. .+|+..++ ++|..+-..+|.. .+++.+.+.+
T Consensus 58 vdvde~~~~~~~~~V~------~~PTf~f~-k~g~~~~~~vGa~-----~~~l~~~i~~ 104 (106)
T KOG0907|consen 58 VDVDELEEVAKEFNVK------AMPTFVFY-KGGEEVDEVVGAN-----KAELEKKIAK 104 (106)
T ss_pred EecccCHhHHHhcCce------EeeEEEEE-ECCEEEEEEecCC-----HHHHHHHHHh
Confidence 4444 8889999988 47998888 9999998888864 3566666654
No 116
>PHA02278 thioredoxin-like protein
Probab=81.05 E-value=5.1 Score=27.35 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=25.9
Q ss_pred hHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecC
Q psy17183 67 HAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDI 104 (145)
Q Consensus 67 ~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~ 104 (145)
.++++.|++. ..|+.+++ ++|+++....|..
T Consensus 62 ~~l~~~~~I~------~iPT~i~f-k~G~~v~~~~G~~ 92 (103)
T PHA02278 62 EKAVKLFDIM------STPVLIGY-KDGQLVKKYEDQV 92 (103)
T ss_pred HHHHHHCCCc------cccEEEEE-ECCEEEEEEeCCC
Confidence 5799999998 47988888 8899999888864
No 117
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=80.48 E-value=12 Score=26.28 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=21.3
Q ss_pred cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHH
Q psy17183 83 SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQ 116 (145)
Q Consensus 83 ~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~ 116 (145)
..|+.+++ ++|+++....|... ..+++.+.
T Consensus 90 ~~PT~v~~-k~Gk~v~~~~G~~~---~~~~l~~~ 119 (122)
T TIGR01295 90 GTPTFVHI-TDGKQVSVRCGSST---TAQELQDI 119 (122)
T ss_pred CCCEEEEE-eCCeEEEEEeCCCC---CHHHHHHH
Confidence 36999988 99999998888632 24455443
No 118
>smart00594 UAS UAS domain.
Probab=78.75 E-value=6.7 Score=27.27 Aligned_cols=47 Identities=17% Similarity=0.096 Sum_probs=30.3
Q ss_pred CchHHHHHhCCCccCCCCcceEEEEECCCC-cEEEEEeecCCCCCCHHHHHHHH
Q psy17183 65 STHAISKTYGCYLSSAGHSLRAYYIIDKRG-YLRSMNVSDIQVGRNLKEILRQV 117 (145)
Q Consensus 65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG-~I~~~~~~~~~~~~~~~ell~~i 117 (145)
...+++..|++. ..|+..|+|++| ......++......+.++++..|
T Consensus 74 eg~~l~~~~~~~------~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 74 EGQRVSQFYKLD------SFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred hHHHHHHhcCcC------CCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 356788888887 379999999997 22223333333334577777655
No 119
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=78.64 E-value=5.7 Score=25.85 Aligned_cols=39 Identities=10% Similarity=0.263 Sum_probs=26.2
Q ss_pred chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHH
Q psy17183 66 THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILR 115 (145)
Q Consensus 66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~ 115 (145)
...+++.||+. ..|+.++. ++|++.....|.. +.+++.+
T Consensus 64 ~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~ 102 (104)
T cd02997 64 HDALKEEYNVK------GFPTFKYF-ENGKFVEKYEGER----TAEDIIE 102 (104)
T ss_pred cHHHHHhCCCc------cccEEEEE-eCCCeeEEeCCCC----CHHHHHh
Confidence 66888999986 36875555 7899877666553 3455543
No 120
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=78.59 E-value=7.1 Score=24.09 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=27.6
Q ss_pred ceEEEEECCCCcEEEEEeecCCCCCC-HHHHHHHHHhcccc
Q psy17183 84 LRAYYIIDKRGYLRSMNVSDIQVGRN-LKEILRQVEAFQLV 123 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~~~~~~~~~~-~~ell~~i~~l~~~ 123 (145)
....|.||++|+|....+-..+.... -++++++++++.+.
T Consensus 12 v~v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~~~~~ 52 (74)
T TIGR01352 12 VVVRFTVDADGRVTSVSVLKSSGDEALDRAALEAVRKARFE 52 (74)
T ss_pred EEEEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHhCCCC
Confidence 56789999999998877643322222 35677888887654
No 121
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=78.01 E-value=9.2 Score=23.50 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=30.4
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV 117 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i 117 (145)
.+...++++.|++. ..|+.+++ ++|++.....+..+ .+++...|
T Consensus 49 ~~~~~~~~~~~~v~------~~P~~~~~-~~g~~~~~~~g~~~----~~~l~~~i 92 (93)
T cd02947 49 VDENPELAEEYGVR------SIPTFLFF-KNGKEVDRVVGADP----KEELEEFL 92 (93)
T ss_pred CCCChhHHHhcCcc------cccEEEEE-ECCEEEEEEecCCC----HHHHHHHh
Confidence 44568899999987 36998888 67787777766532 35555544
No 122
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=77.47 E-value=23 Score=26.02 Aligned_cols=67 Identities=18% Similarity=0.085 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcc
Q psy17183 5 IACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSL 84 (145)
Q Consensus 5 e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~ 84 (145)
-...|+++. +++++.+..=+.||+++.+...+..+- - - ..+++-....++|+.+|+.. +
T Consensus 74 S~~WL~~~~--~~L~~l~AvGlVVNV~t~~~L~~Lr~l---a-------p---gl~l~P~sgddLA~rL~l~H------Y 132 (142)
T PF11072_consen 74 SRQWLQQNA--EELKQLGAVGLVVNVATEAALQRLRQL---A-------P---GLPLLPVSGDDLARRLGLSH------Y 132 (142)
T ss_pred HHHHHHHHH--HHHHHCCCeEEEEecCCHHHHHHHHHH---c-------C---CCeecCCCHHHHHHHhCCCc------c
Confidence 345677777 689999999999999999888887663 1 2 46777778889999999872 2
Q ss_pred eEEEEECCCC
Q psy17183 85 RAYYIIDKRG 94 (145)
Q Consensus 85 p~tfIID~dG 94 (145)
| ++|...|
T Consensus 133 P--vLIt~~g 140 (142)
T PF11072_consen 133 P--VLITATG 140 (142)
T ss_pred c--EEeecCC
Confidence 3 5666665
No 123
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=76.31 E-value=7.8 Score=28.35 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=45.3
Q ss_pred EEecCchHHHHHhCCCccCCCCcceEEEEECCCCc-EEEEEeecCC----CCCCHHHHHHHHHhccccccCC---cccCC
Q psy17183 61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGY-LRSMNVSDIQ----VGRNLKEILRQVEAFQLVDSTD---TQCPV 132 (145)
Q Consensus 61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~-I~~~~~~~~~----~~~~~~ell~~i~~l~~~~~~~---~~~p~ 132 (145)
+=.|...+++..|++.. .|+++++=++|. .+....|..+ .-.+.+++.+.++.+......+ -.||.
T Consensus 61 VDVDe~~dla~~y~I~~------~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~ 134 (142)
T PLN00410 61 VDITEVPDFNTMYELYD------PCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVISPK 134 (142)
T ss_pred EECCCCHHHHHHcCccC------CCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence 33567789999999983 466664448887 6666666421 1235678888877776654444 33888
Q ss_pred CCCC
Q psy17183 133 NWTT 136 (145)
Q Consensus 133 ~w~~ 136 (145)
+...
T Consensus 135 ~~~~ 138 (142)
T PLN00410 135 DYST 138 (142)
T ss_pred cccc
Confidence 8753
No 124
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=76.03 E-value=8.8 Score=29.14 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=36.1
Q ss_pred HHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHh
Q psy17183 7 CDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTY 73 (145)
Q Consensus 7 ~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~y 73 (145)
|.+++.. ++.++.|..++.||..+..-...|++. + .+|.++-...-++++|
T Consensus 49 pe~~~W~--~e~k~~gi~v~vvSNn~e~RV~~~~~~-----------l---~v~fi~~A~KP~~~~f 99 (175)
T COG2179 49 PELRAWL--AELKEAGIKVVVVSNNKESRVARAAEK-----------L---GVPFIYRAKKPFGRAF 99 (175)
T ss_pred HHHHHHH--HHHHhcCCEEEEEeCCCHHHHHhhhhh-----------c---CCceeecccCccHHHH
Confidence 5566666 578899999999999888888888775 4 5666665544443333
No 125
>PTZ00051 thioredoxin; Provisional
Probab=76.00 E-value=5.1 Score=26.03 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=26.7
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeec
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~ 103 (145)
.|....+++.|++. ..|+.+++ ++|+++....|.
T Consensus 57 ~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~ 90 (98)
T PTZ00051 57 VDELSEVAEKENIT------SMPTFKVF-KNGSVVDTLLGA 90 (98)
T ss_pred CcchHHHHHHCCCc------eeeEEEEE-eCCeEEEEEeCC
Confidence 44567899999997 36875555 899999888886
No 126
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=75.62 E-value=7.4 Score=30.50 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=33.3
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
.|...++++.|++. ..|++++++ +|++.....|. ++.+++.+.+...
T Consensus 92 ~~~~~~l~~~~~I~------~~PTl~~f~-~G~~v~~~~G~----~s~e~L~~fi~~~ 138 (224)
T PTZ00443 92 ATRALNLAKRFAIK------GYPTLLLFD-KGKMYQYEGGD----RSTEKLAAFALGD 138 (224)
T ss_pred CcccHHHHHHcCCC------cCCEEEEEE-CCEEEEeeCCC----CCHHHHHHHHHHH
Confidence 45678899999987 379999996 78876544333 4567777665544
No 127
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=75.12 E-value=7.9 Score=25.17 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=29.2
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHH
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQ 116 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~ 116 (145)
.|...++++.|++. ..|+.+++++.......+.|+ ++.+++.+.
T Consensus 58 ~~~~~~~~~~~~i~------~~P~~~~~~~~~~~~~~~~g~----~~~~~l~~~ 101 (103)
T cd03001 58 ADVHQSLAQQYGVR------GFPTIKVFGAGKNSPQDYQGG----RTAKAIVSA 101 (103)
T ss_pred CcchHHHHHHCCCC------ccCEEEEECCCCcceeecCCC----CCHHHHHHH
Confidence 56688899999997 379999996553433333333 556666654
No 128
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=74.47 E-value=24 Score=30.81 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=27.5
Q ss_pred HHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 70 SKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 70 a~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
.+.|++. ..|+.+++. +|...... .....|+.+.++..|++|+
T Consensus 421 ~~~~~I~------~~PTii~Fk-~g~~~~~~--Y~~g~R~~e~L~~Fv~~~~ 463 (463)
T TIGR00424 421 KQELQLG------SFPTILFFP-KHSSRPIK--YPSEKRDVDSLMSFVNLLR 463 (463)
T ss_pred HHHcCCC------ccceEEEEE-CCCCCcee--CCCCCCCHHHHHHHHHhhC
Confidence 3578887 369988884 44322111 1123488999999998874
No 129
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=73.77 E-value=7.9 Score=24.21 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=27.6
Q ss_pred ceEEEEECCCCcEEEEEeecCCC-CCCHHHHHHHHHhcccc
Q psy17183 84 LRAYYIIDKRGYLRSMNVSDIQV-GRNLKEILRQVEAFQLV 123 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~~~~~~~-~~~~~ell~~i~~l~~~ 123 (145)
....|.||++|+|....+-.... +.--++++++++..++.
T Consensus 18 v~v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~~~~~ 58 (79)
T PF03544_consen 18 VVVEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKKWRFK 58 (79)
T ss_dssp EEEEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC-EE-
T ss_pred EEEEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHhCCCC
Confidence 56789999999999877654322 22457888888886554
No 130
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=73.24 E-value=16 Score=24.97 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=31.7
Q ss_pred cEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCC
Q psy17183 60 PLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQV 106 (145)
Q Consensus 60 pllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~ 106 (145)
.+=.|...++++.|++. ..|+..++ ++|+++....|....
T Consensus 58 ~Vd~~~~~~l~~~~~v~------~vPt~l~f-k~G~~v~~~~g~~~~ 97 (113)
T cd02989 58 KVNAEKAPFLVEKLNIK------VLPTVILF-KNGKTVDRIVGFEEL 97 (113)
T ss_pred EEEcccCHHHHHHCCCc------cCCEEEEE-ECCEEEEEEECcccc
Confidence 35567788899999998 47988888 799999888776543
No 131
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.68 E-value=11 Score=28.56 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=32.9
Q ss_pred chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183 66 THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118 (145)
Q Consensus 66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~ 118 (145)
..++|+.|++. +.|+.++.|++|+-....-|.++ .++.+..++
T Consensus 104 ~~ELa~kf~vr------stPtfvFfdk~Gk~Il~lPGY~p----pe~Fl~vlk 146 (182)
T COG2143 104 TEELAQKFAVR------STPTFVFFDKTGKTILELPGYMP----PEQFLAVLK 146 (182)
T ss_pred HHHHHHHhccc------cCceEEEEcCCCCEEEecCCCCC----HHHHHHHHH
Confidence 45889999998 47999999999998887777765 344544443
No 132
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=72.53 E-value=9.3 Score=32.08 Aligned_cols=39 Identities=26% Similarity=0.229 Sum_probs=32.7
Q ss_pred hhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc
Q psy17183 17 ILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST 66 (145)
Q Consensus 17 ~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~ 66 (145)
++...|.+++=|++++.++..++.+ |+++ + +.||+.|.+
T Consensus 44 ~L~~aG~dIVRvtv~~~e~A~A~~~-Ik~~-------~---~vPLVaDiH 82 (361)
T COG0821 44 ALERAGCDIVRVTVPDMEAAEALKE-IKQR-------L---NVPLVADIH 82 (361)
T ss_pred HHHHcCCCEEEEecCCHHHHHHHHH-HHHh-------C---CCCEEEEee
Confidence 6788999999999999999888866 4433 7 899999975
No 133
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=72.49 E-value=28 Score=23.78 Aligned_cols=29 Identities=10% Similarity=0.238 Sum_probs=22.2
Q ss_pred CccEE-ecCchHHHHHhCCCccCCCCcceEEEEECC
Q psy17183 58 IVPLL-SDSTHAISKTYGCYLSSAGHSLRAYYIIDK 92 (145)
Q Consensus 58 ~fpll-sD~~~~va~~yg~~~~~~g~~~p~tfIID~ 92 (145)
.|-.+ .|...+++++|++. ..|+.+|.+.
T Consensus 55 ~~~~vd~d~~~~l~~~~~v~------~vPt~~i~~~ 84 (113)
T cd02975 55 KLEIYDFDEDKEKAEKYGVE------RVPTTIFLQD 84 (113)
T ss_pred EEEEEeCCcCHHHHHHcCCC------cCCEEEEEeC
Confidence 44433 67788999999998 4799999865
No 134
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=72.45 E-value=14 Score=25.70 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=33.2
Q ss_pred chHHHHHhCCCccCCCCcceEEEEE---CCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 66 THAISKTYGCYLSSAGHSLRAYYII---DKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 66 ~~~va~~yg~~~~~~g~~~p~tfII---D~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
..+++..+++. +.|...+| +.+..|+....|.. +.++++..|+..
T Consensus 65 g~~la~~l~~~------~~P~~~~l~~~~~~~~vv~~i~G~~----~~~~ll~~L~~~ 112 (116)
T cd02991 65 GYRVSQALRER------TYPFLAMIMLKDNRMTIVGRLEGLI----QPEDLINRLTFI 112 (116)
T ss_pred HHHHHHHhCCC------CCCEEEEEEecCCceEEEEEEeCCC----CHHHHHHHHHHH
Confidence 36678888877 47999999 66677777777764 468888877654
No 135
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=71.56 E-value=23 Score=22.38 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=26.2
Q ss_pred CccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183 58 IVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118 (145)
Q Consensus 58 ~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~ 118 (145)
.+.+.--.+..-...||+. +.|+. +| ||++++ .|..+ +.+++.+.|+
T Consensus 30 ~~ei~~~~~~~~~~~ygv~------~vPal-vI--ng~~~~--~G~~p---~~~el~~~l~ 76 (76)
T PF13192_consen 30 EVEIIDIEDFEEIEKYGVM------SVPAL-VI--NGKVVF--VGRVP---SKEELKELLE 76 (76)
T ss_dssp EEEEEETTTHHHHHHTT-S------SSSEE-EE--TTEEEE--ESS-----HHHHHHHHHH
T ss_pred eEEEEEccCHHHHHHcCCC------CCCEE-EE--CCEEEE--EecCC---CHHHHHHHhC
Confidence 5554433444445889988 47888 55 488774 45322 3466666553
No 136
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=71.01 E-value=4.3 Score=28.19 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=23.3
Q ss_pred HHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeec
Q psy17183 68 AISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 68 ~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~ 103 (145)
...+.|++. |...|+++++|++|+++..+++.
T Consensus 65 ~~~~~~~~~----g~~vPt~~f~~~~Gk~~~~~~~~ 96 (117)
T cd02959 65 PKDEEFSPD----GGYIPRILFLDPSGDVHPEIINK 96 (117)
T ss_pred chhhhcccC----CCccceEEEECCCCCCchhhccC
Confidence 445667664 32479999999999998865543
No 137
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=70.59 E-value=16 Score=22.66 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=24.5
Q ss_pred CchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 65 STHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
...+.++.||+. ..|+.++ +|++ ...|. .+.+++.+.|+.
T Consensus 41 ~~~~~~~~~~v~------~vPt~~~---~g~~--~~~G~----~~~~~l~~~l~~ 80 (82)
T TIGR00411 41 ENPQKAMEYGIM------AVPAIVI---NGDV--EFIGA----PTKEELVEAIKK 80 (82)
T ss_pred cCHHHHHHcCCc------cCCEEEE---CCEE--EEecC----CCHHHHHHHHHh
Confidence 355667778877 3688775 6664 33343 235677776654
No 138
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=70.39 E-value=31 Score=23.51 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=15.1
Q ss_pred eEEEEECCCCcEEEEEeec
Q psy17183 85 RAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~ 103 (145)
+..|+.||+|.......+.
T Consensus 100 ~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 100 LFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred EEEEEECCCCCEEEEEcCC
Confidence 5679999999998766543
No 139
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=70.03 E-value=19 Score=27.01 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=34.0
Q ss_pred ccEEecC--chHHHHHhCCCcc---CCCCcceEEEEECCCCcEEEEEeecCCC---C-CCHHHHHHHHHhcc
Q psy17183 59 VPLLSDS--THAISKTYGCYLS---SAGHSLRAYYIIDKRGYLRSMNVSDIQV---G-RNLKEILRQVEAFQ 121 (145)
Q Consensus 59 fpllsD~--~~~va~~yg~~~~---~~g~~~p~tfIID~dG~I~~~~~~~~~~---~-~~~~ell~~i~~l~ 121 (145)
+|+..|. .-.+.+.|..... ..| ..|.+++++|+|+..+...+..+. + ..+.++++.|..+-
T Consensus 74 I~VkvDree~Pdid~~y~~~~~~~~~~g-GwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w 144 (163)
T PF03190_consen 74 IPVKVDREERPDIDKIYMNAVQAMSGSG-GWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELW 144 (163)
T ss_dssp EEEEEETTT-HHHHHHHHHHHHHHHS----SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHH
T ss_pred EEEEeccccCccHHHHHHHHHHHhcCCC-CCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHH
Confidence 6777775 4466666621100 011 379999999999999887654332 1 25677777665543
No 140
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=69.36 E-value=17 Score=25.58 Aligned_cols=28 Identities=4% Similarity=-0.104 Sum_probs=19.1
Q ss_pred CchHHHHHhCCCccCCCCcceEEEEECCCCcEE
Q psy17183 65 STHAISKTYGCYLSSAGHSLRAYYIIDKRGYLR 97 (145)
Q Consensus 65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~ 97 (145)
....++..|++.. .+|+.++++..++++
T Consensus 77 ~~~~~~~~~~I~~-----~iPT~~~~~~~~~l~ 104 (119)
T cd02952 77 PNNPFRTDPKLTT-----GVPTLLRWKTPQRLV 104 (119)
T ss_pred cchhhHhccCccc-----CCCEEEEEcCCceec
Confidence 3567788888761 379999996555443
No 141
>PTZ00102 disulphide isomerase; Provisional
Probab=68.70 E-value=38 Score=28.58 Aligned_cols=49 Identities=4% Similarity=0.030 Sum_probs=35.1
Q ss_pred cCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183 64 DSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL 122 (145)
Q Consensus 64 D~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~ 122 (145)
|.+...++.|++. ..|+.+++++.+++...+.|. ++.+++.+.|++...
T Consensus 418 ~~~~~~~~~~~v~------~~Pt~~~~~~~~~~~~~~~G~----~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 418 TANETPLEEFSWS------AFPTILFVKAGERTPIPYEGE----RTVEGFKEFVNKHAT 466 (477)
T ss_pred CCCccchhcCCCc------ccCeEEEEECCCcceeEecCc----CCHHHHHHHHHHcCC
Confidence 3455567778776 379999999888875555554 467888888877654
No 142
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=67.84 E-value=37 Score=23.43 Aligned_cols=44 Identities=5% Similarity=-0.157 Sum_probs=28.2
Q ss_pred EEecCchHHH-HHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHH
Q psy17183 61 LLSDSTHAIS-KTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILR 115 (145)
Q Consensus 61 llsD~~~~va-~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~ 115 (145)
+=.|.+..++ +.|++. ..|+..+. ++|+....+.|. +..++++.
T Consensus 67 Vd~d~~~~l~~~~~~I~------~~PTl~lf-~~g~~~~~y~G~----~~~~~i~~ 111 (113)
T cd03006 67 INCWWPQGKCRKQKHFF------YFPVIHLY-YRSRGPIEYKGP----MRAPYMEK 111 (113)
T ss_pred EECCCChHHHHHhcCCc------ccCEEEEE-ECCccceEEeCC----CCHHHHHh
Confidence 3345566677 578887 37988888 788876555554 34455543
No 143
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=67.28 E-value=36 Score=23.07 Aligned_cols=60 Identities=8% Similarity=-0.063 Sum_probs=33.5
Q ss_pred EEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecC
Q psy17183 25 IIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDI 104 (145)
Q Consensus 25 vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~ 104 (145)
-++..+++.....++.+.+++.+ + ++...+..... .++. .+..|+.||+|.....+.++.
T Consensus 62 ~iaf~v~~~~dv~~~~~~l~~~G------~-----~~~~~~~~~~~-~~~~--------~~~~~f~DPdG~~iE~~~~~~ 121 (124)
T cd08361 62 ASGFELRDDDALESAATELEQYG------H-----EVRRGTAEECE-LRKV--------KAFIAFRDPSGNSIELVVRPS 121 (124)
T ss_pred EEEEEECCHHHHHHHHHHHHHcC------C-----ceEEcCHHHhh-cCCc--------ceEEEEECcCCCEEEEEEeee
Confidence 35556666666666666655543 3 33332221111 1111 246799999999887776654
No 144
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.58 E-value=9.4 Score=31.45 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=39.0
Q ss_pred CccEE---ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 58 IVPLL---SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 58 ~fpll---sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
.|-+. +|..-.|+..||+. ++|++|++ +||+-+.-+.|..+ .+.|.+.|+.+
T Consensus 75 ~f~LakvN~D~~p~vAaqfgiq------sIPtV~af-~dGqpVdgF~G~qP----esqlr~~ld~~ 129 (304)
T COG3118 75 KFKLAKVNCDAEPMVAAQFGVQ------SIPTVYAF-KDGQPVDGFQGAQP----ESQLRQFLDKV 129 (304)
T ss_pred ceEEEEecCCcchhHHHHhCcC------cCCeEEEe-eCCcCccccCCCCc----HHHHHHHHHHh
Confidence 45544 78899999999998 68999999 99999988888754 33444444433
No 145
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=66.53 E-value=49 Score=27.47 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=33.4
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcE-EEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYL-RSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I-~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
+|...++++.|++. ..|+.+++ ++|+. ...+.|. ++.+++.+.+..+.
T Consensus 61 ~~~~~~l~~~~~i~------~~Pt~~~~-~~g~~~~~~~~g~----~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 61 ATEEKDLAQKYGVS------GYPTLKIF-RNGEDSVSDYNGP----RDADGIVKYMKKQS 109 (462)
T ss_pred CCCcHHHHHhCCCc------cccEEEEE-eCCccceeEecCC----CCHHHHHHHHHHhc
Confidence 66788999999998 36987777 67776 4555554 45667777665543
No 146
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=66.52 E-value=28 Score=23.42 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=14.9
Q ss_pred ceEEEEECCCCcEEEEEe
Q psy17183 84 LRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~~ 101 (145)
.+..|+.||+|.+.....
T Consensus 103 ~~~~~f~DPdG~~iEl~~ 120 (123)
T cd08351 103 GRGVYFLDPDGHLLEIIT 120 (123)
T ss_pred eeEEEEECCCCCEEEEEe
Confidence 489999999999876654
No 147
>PTZ00102 disulphide isomerase; Provisional
Probab=65.94 E-value=33 Score=28.97 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=34.4
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
++...++++.|++. ..|+.++++..+.+ .+.|. ++.+++.+.++++.
T Consensus 92 ~~~~~~l~~~~~i~------~~Pt~~~~~~g~~~--~y~g~----~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 92 ATEEMELAQEFGVR------GYPTIKFFNKGNPV--NYSGG----RTADGIVSWIKKLT 138 (477)
T ss_pred CCCCHHHHHhcCCC------cccEEEEEECCceE--EecCC----CCHHHHHHHHHHhh
Confidence 66789999999987 37999999765544 33333 56788888777654
No 148
>KOG4614|consensus
Probab=65.84 E-value=6.9 Score=31.42 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=23.7
Q ss_pred eEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhc
Q psy17183 85 RAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l 120 (145)
=-+|+||+.|+||+.-.|..+. ...+.++..++-|
T Consensus 249 GyV~L~D~s~kIRW~g~G~aTp-~Eve~L~~~~k~L 283 (287)
T KOG4614|consen 249 GYVLLLDKSGKIRWQGFGTATP-EEVEQLLSCTKLL 283 (287)
T ss_pred EEEEEEccCceEEEeecCCCCH-HHHHHHHHHHHHH
Confidence 3589999999999998887542 2244444444433
No 149
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=64.00 E-value=8.7 Score=27.35 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=13.9
Q ss_pred eEEEEECCCCcEEEEEe
Q psy17183 85 RAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~ 101 (145)
=.++|+|++|+++|...
T Consensus 51 d~~~~~d~~g~~~~~~~ 67 (161)
T PF05228_consen 51 DLIFILDPDGRVLYSSS 67 (161)
T ss_pred cEEEEEcCCCCEEEEec
Confidence 46899999999998443
No 150
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=63.72 E-value=34 Score=21.54 Aligned_cols=31 Identities=10% Similarity=-0.076 Sum_probs=19.4
Q ss_pred CccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEE
Q psy17183 58 IVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLR 97 (145)
Q Consensus 58 ~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~ 97 (145)
.+.++-=.+-..+..||+. ..|+.+| +|+++
T Consensus 30 ~~~~~~v~~~~~a~~~~v~------~vPti~i---~G~~~ 60 (76)
T TIGR00412 30 DAEFEKVTDMNEILEAGVT------ATPGVAV---DGELV 60 (76)
T ss_pred CeEEEEeCCHHHHHHcCCC------cCCEEEE---CCEEE
Confidence 4444322234447778887 4798777 88887
No 151
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=62.82 E-value=5.8 Score=28.61 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=19.5
Q ss_pred CCcceEEEEECCCCcEEEEEeec
Q psy17183 81 GHSLRAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 81 g~~~p~tfIID~dG~I~~~~~~~ 103 (145)
|...|+++++|++|+++....|.
T Consensus 77 g~~vPtivFld~~g~vi~~i~Gy 99 (130)
T cd02960 77 GQYVPRIMFVDPSLTVRADITGR 99 (130)
T ss_pred CcccCeEEEECCCCCCccccccc
Confidence 34579999999999999888775
No 152
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=61.83 E-value=4.3 Score=26.42 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=23.4
Q ss_pred EEEEECCCCcEEEEEeecCCC-CCCHHHHHHHHHh
Q psy17183 86 AYYIIDKRGYLRSMNVSDIQV-GRNLKEILRQVEA 119 (145)
Q Consensus 86 ~tfIID~dG~I~~~~~~~~~~-~~~~~ell~~i~~ 119 (145)
..|.||+||.|..-.+|.... |.+..|+.+.|++
T Consensus 31 ~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~ 65 (82)
T PF02563_consen 31 GEYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQ 65 (82)
T ss_dssp CSEE--TTSEEEETTTEEEE-TT--HHHHHHHHHH
T ss_pred cceEECCCCcEeecccceEEECCCCHHHHHHHHHH
Confidence 379999999999888887654 7788888877754
No 153
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=61.49 E-value=46 Score=22.25 Aligned_cols=19 Identities=11% Similarity=0.001 Sum_probs=15.7
Q ss_pred eEEEEECCCCcEEEEEeec
Q psy17183 85 RAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~ 103 (145)
+..|+.||+|.......+.
T Consensus 100 ~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 100 GLIRFADPDGNRHELFWGP 118 (120)
T ss_pred EEEEEECCCCCEEEEEecc
Confidence 5789999999998776654
No 154
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=61.47 E-value=25 Score=27.56 Aligned_cols=54 Identities=15% Similarity=0.309 Sum_probs=36.8
Q ss_pred HHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCH-HHHHHHHHhccccccCC
Q psy17183 69 ISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNL-KEILRQVEAFQLVDSTD 127 (145)
Q Consensus 69 va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~-~ell~~i~~l~~~~~~~ 127 (145)
.|++.|.. | .....|.||++|+|.-..+...+..+.+ .+++++|+.+.+.-..+
T Consensus 172 ~A~~~g~~----G-~V~V~f~i~~~G~v~~v~v~~SSg~~~lD~aal~air~~~~~p~~p 226 (244)
T COG0810 172 QARARGIE----G-TVKVKFTIDPDGNVTNVRVLKSSGSPALDRAALEAIRKWRFKPPKP 226 (244)
T ss_pred HHHhcCCC----c-eEEEEEEECCCCCEeeeEEeecCCcHHHHHHHHHHHHHhccCCCCC
Confidence 34555553 4 4688999999999998887654433333 56788888887754443
No 155
>PRK10819 transport protein TonB; Provisional
Probab=61.17 E-value=16 Score=29.03 Aligned_cols=42 Identities=7% Similarity=0.276 Sum_probs=29.3
Q ss_pred cceEEEEECCCCcEEEEEeecCCCCCCH-HHHHHHHHhccccc
Q psy17183 83 SLRAYYIIDKRGYLRSMNVSDIQVGRNL-KEILRQVEAFQLVD 124 (145)
Q Consensus 83 ~~p~tfIID~dG~I~~~~~~~~~~~~~~-~ell~~i~~l~~~~ 124 (145)
.....|.||.+|+|....+-.......+ ++++++++++++..
T Consensus 182 ~V~V~f~I~~~G~V~~v~V~~Ssg~~~fD~aal~Avr~wr~~p 224 (246)
T PRK10819 182 QVKVKFDVDEDGRVDNVRILSAEPRNMFEREVKQAMRKWRYEA 224 (246)
T ss_pred EEEEEEEECCCCCEEEEEEeccCChHHHHHHHHHHHHhcCCCC
Confidence 3567899999999998876443221123 46788888887654
No 156
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=60.71 E-value=12 Score=25.34 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=26.8
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecC
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDI 104 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~ 104 (145)
.|.. .+++.|++. ..|+.+++ ++|+++....|..
T Consensus 63 ~~~~-~l~~~~~i~------~~Pt~~~f-~~G~~v~~~~G~~ 96 (113)
T cd02957 63 AEKA-FLVNYLDIK------VLPTLLVY-KNGELIDNIVGFE 96 (113)
T ss_pred chhh-HHHHhcCCC------cCCEEEEE-ECCEEEEEEecHH
Confidence 3334 899999997 47987777 8999999988754
No 157
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=60.63 E-value=27 Score=22.19 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=24.4
Q ss_pred cceEEEEECCCCcEEEEEeecCCCCCCH-HHHHHHHHhccccccCC
Q psy17183 83 SLRAYYIIDKRGYLRSMNVSDIQVGRNL-KEILRQVEAFQLVDSTD 127 (145)
Q Consensus 83 ~~p~tfIID~dG~I~~~~~~~~~~~~~~-~ell~~i~~l~~~~~~~ 127 (145)
..-..|-||++|+|....+-..+....+ +.++++|++......-+
T Consensus 27 ~~~V~i~i~~dG~v~~~~i~~sSG~~~~D~av~~ai~~~~p~p~pP 72 (85)
T PF13103_consen 27 SVTVRITIDPDGRVISVRIVKSSGNPAFDAAVRRAIRRASPFPPPP 72 (85)
T ss_dssp -EEEEEEE-TTSBEEEEEEEE--S-HHHHHHHHHHHHHH-B-GGGG
T ss_pred EEEEEEEECCCCCEEEEEEecCCCCHHHHHHHHHHHHHcCCCCcCC
Confidence 4567899999999975555443322223 45567777666554444
No 158
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=60.13 E-value=9.3 Score=27.23 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=36.2
Q ss_pred cCCcEEEEEeCC----CHHHHHHHHHHHhhcCCCCCCCCCCCCcc-EEecCchHHHHHhCCCccCCCCcceEEEEECCCC
Q psy17183 20 VSPFQIIAVSVD----SHLAHLAWTKTLTATSSNRSAIDPSKIVP-LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRG 94 (145)
Q Consensus 20 ~~gv~vi~VS~D----~~~~~~~~~~~~~~~~~~~~~~~~~~~fp-llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG 94 (145)
..+..++++..+ .....-.+.+-++... + + .+. ++-|.+.++..+|--. .+.+.|+.+++|.+|
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~---i---~~~~i~rd~~~el~~~~lt~---g~~~IP~~I~~d~~~ 108 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP--N---I---EVRIILRDENKELMDQYLTN---GGRSIPTFIFLDKDG 108 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--T---E---EEEEE-HHHHHHHTTTTTT----SS--SSEEEEE-TT-
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--C---C---eEEEEEecCChhHHHHHHhC---CCeecCEEEEEcCCC
Confidence 456788888644 2222233333222232 1 4 555 4456677777666441 245799999999999
Q ss_pred cEEEEEee
Q psy17183 95 YLRSMNVS 102 (145)
Q Consensus 95 ~I~~~~~~ 102 (145)
.+..++..
T Consensus 109 ~~lg~wge 116 (129)
T PF14595_consen 109 KELGRWGE 116 (129)
T ss_dssp -EEEEEES
T ss_pred CEeEEEcC
Confidence 99988753
No 159
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=60.06 E-value=69 Score=23.82 Aligned_cols=38 Identities=8% Similarity=0.142 Sum_probs=27.9
Q ss_pred HHHHHHhhhhhhhcCCcEEEEEeCCC---HHHHHHHHHHHhhc
Q psy17183 7 CDVLKLVRKEILIVSPFQIIAVSVDS---HLAHLAWTKTLTAT 46 (145)
Q Consensus 7 ~~~~~~~~~~~f~~~gv~vi~VS~D~---~~~~~~~~~~~~~~ 46 (145)
+...+++ ..+.++|+.++=+|.-+ ....++|...+.+.
T Consensus 30 ~g~~~l~--~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~ 70 (157)
T PF08235_consen 30 PGAAELY--RKIADNGYKILYLTARPIGQANRTRSWLAQHQQQ 70 (157)
T ss_pred hcHHHHH--HHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhC
Confidence 5566788 47899999999998754 44567888875443
No 160
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=59.97 E-value=61 Score=23.33 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=36.2
Q ss_pred CcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEe
Q psy17183 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 22 gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~ 101 (145)
++.-|++.+++.....++.+++++.+ + .+. .. .. .+ ..++.|+-|++|.......
T Consensus 65 ~l~Hiaf~v~d~~dvd~~~~~L~~~G------v---~~~---~~----------~~--~~-~~~s~yf~DPdG~~iEl~~ 119 (157)
T cd08347 65 TVHHVAFRVPDDEELEAWKERLEALG------L---PVS---GI----------VD--RF-YFKSLYFREPGGILFEIAT 119 (157)
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHCC------C---Ccc---cc----------cc--cc-cEEEEEEECCCCcEEEEEE
Confidence 45567888888777777777766654 4 321 00 00 01 1367899999999887765
Q ss_pred ec
Q psy17183 102 SD 103 (145)
Q Consensus 102 ~~ 103 (145)
..
T Consensus 120 ~~ 121 (157)
T cd08347 120 DG 121 (157)
T ss_pred CC
Confidence 43
No 161
>COG4448 AnsA L-asparaginase II [Amino acid transport and metabolism]
Probab=59.49 E-value=22 Score=29.22 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=22.9
Q ss_pred EEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcccc
Q psy17183 86 AYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLV 123 (145)
Q Consensus 86 ~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~ 123 (145)
...++|.||++++. .|+.....-....++.+++|..+
T Consensus 29 ~a~V~D~dGr~l~~-~Gd~e~~~FpRSA~K~~QALplv 65 (339)
T COG4448 29 AAVVVDGDGRVLFS-AGDSERPTFPRSALKAFQALPLV 65 (339)
T ss_pred eEEEEcCCCcEEEe-cccccCCccchhhhhhhhhcccc
Confidence 46889999999876 34432222345556666666553
No 162
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=59.45 E-value=31 Score=26.28 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=25.1
Q ss_pred CchHHHHHhCCCccCCCCcceEEEEECCCCcEE-EEEeecC
Q psy17183 65 STHAISKTYGCYLSSAGHSLRAYYIIDKRGYLR-SMNVSDI 104 (145)
Q Consensus 65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~-~~~~~~~ 104 (145)
...++++.|++. ..|+.++++ +|+.. ..+.|..
T Consensus 65 ~~~~l~~~~~V~------~~Pt~~~f~-~g~~~~~~~~G~~ 98 (215)
T TIGR02187 65 EDKEEAEKYGVE------RVPTTIILE-EGKDGGIRYTGIP 98 (215)
T ss_pred ccHHHHHHcCCC------ccCEEEEEe-CCeeeEEEEeecC
Confidence 688999999998 479888884 67665 4667753
No 163
>PLN02309 5'-adenylylsulfate reductase
Probab=59.28 E-value=72 Score=27.80 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=30.3
Q ss_pred CchHHHH-HhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 65 STHAISK-TYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 65 ~~~~va~-~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
.+..+++ .|++. ..|+.+++.+... ..+. .....|+.+.++..|++|+
T Consensus 409 ~~~~la~~~~~I~------~~PTil~f~~g~~-~~v~--Y~~~~R~~~~L~~fv~~~~ 457 (457)
T PLN02309 409 DQKEFAKQELQLG------SFPTILLFPKNSS-RPIK--YPSEKRDVDSLLSFVNSLR 457 (457)
T ss_pred cchHHHHhhCCCc------eeeEEEEEeCCCC-Ceee--cCCCCcCHHHHHHHHHHhC
Confidence 3456665 58877 3799998844332 2221 2223478999999998874
No 164
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=59.18 E-value=16 Score=26.02 Aligned_cols=38 Identities=8% Similarity=0.032 Sum_probs=23.4
Q ss_pred eEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183 85 RAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL 122 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~ 122 (145)
.+.+|+|.+|+++....+..........+.+.+.....
T Consensus 3 ~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~ 40 (141)
T PF01217_consen 3 KAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKS 40 (141)
T ss_dssp EEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHH
Confidence 57899999999888877643222233455555443333
No 165
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=58.34 E-value=28 Score=20.67 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=19.5
Q ss_pred EEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183 87 YYIIDKRGYLRSMNVSDIQVGRNLKEILRQV 117 (145)
Q Consensus 87 tfIID~dG~I~~~~~~~~~~~~~~~ell~~i 117 (145)
.|.|++||+|.....|.. |.+=.++-+.|
T Consensus 2 ~~~I~~dG~V~~~v~G~~--G~~C~~~t~~l 30 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFK--GSSCLEATAAL 30 (48)
T ss_pred EEEECCCcEEEEEEEecc--ChhHHHHHHHH
Confidence 488999999998887753 33334444444
No 166
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=58.15 E-value=51 Score=21.73 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.5
Q ss_pred eEEEEECCCCcEEEEEee
Q psy17183 85 RAYYIIDKRGYLRSMNVS 102 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~ 102 (145)
+..|+.||+|.......+
T Consensus 101 ~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 101 RALRVEDPLGFPIEFYAE 118 (121)
T ss_pred cEEEEECCCCCEEEEEec
Confidence 678999999998866543
No 167
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=57.35 E-value=29 Score=29.30 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=32.3
Q ss_pred hhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc
Q psy17183 16 EILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST 66 (145)
Q Consensus 16 ~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~ 66 (145)
.++.+.|.+++=|++.+.++.+++.+ |++. + +.|+++|.+
T Consensus 49 ~~L~~aGceiVRvav~~~~~a~al~~-I~~~-------~---~iPlvADIH 88 (360)
T PRK00366 49 KRLARAGCEIVRVAVPDMEAAAALPE-IKKQ-------L---PVPLVADIH 88 (360)
T ss_pred HHHHHcCCCEEEEccCCHHHHHhHHH-HHHc-------C---CCCEEEecC
Confidence 36889999999999999888888755 4333 6 899999974
No 168
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=57.23 E-value=14 Score=25.70 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=22.7
Q ss_pred chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEe
Q psy17183 66 THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~ 101 (145)
...||..||+.-. -|..+|| ++|+++|.-.
T Consensus 66 Sn~IAe~~~V~He-----SPQ~ili-~~g~~v~~aS 95 (105)
T PF11009_consen 66 SNAIAEDFGVKHE-----SPQVILI-KNGKVVWHAS 95 (105)
T ss_dssp HHHHHHHHT---------SSEEEEE-ETTEEEEEEE
T ss_pred HHHHHHHhCCCcC-----CCcEEEE-ECCEEEEECc
Confidence 7789999999853 5999999 9999998754
No 169
>PHA02125 thioredoxin-like protein
Probab=56.23 E-value=43 Score=20.91 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=27.2
Q ss_pred ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHH
Q psy17183 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV 117 (145)
Q Consensus 63 sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i 117 (145)
.|...++++.|++. ..|+.+ +|..+....|.. ++..++.+.|
T Consensus 32 ~~~~~~l~~~~~v~------~~PT~~----~g~~~~~~~G~~---~~~~~l~~~~ 73 (75)
T PHA02125 32 TDEGVELTAKHHIR------SLPTLV----NTSTLDRFTGVP---RNVAELKEKL 73 (75)
T ss_pred CCCCHHHHHHcCCc------eeCeEE----CCEEEEEEeCCC---CcHHHHHHHh
Confidence 45677889999987 368754 576666666642 3456666544
No 170
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=55.03 E-value=25 Score=29.71 Aligned_cols=41 Identities=29% Similarity=0.282 Sum_probs=27.6
Q ss_pred hhhcCCcEEEEEeCCCHHHHHHH---HHHHhhcCCCCCCCCCCCCccEEecCc
Q psy17183 17 ILIVSPFQIIAVSVDSHLAHLAW---TKTLTATSSNRSAIDPSKIVPLLSDST 66 (145)
Q Consensus 17 ~f~~~gv~vi~VS~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~fpllsD~~ 66 (145)
++.+.|.+++=|++.+.++.+++ ++.+++.+ . +.|+++|.+
T Consensus 39 ~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g------~---~iPlVADIH 82 (359)
T PF04551_consen 39 RLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALG------S---PIPLVADIH 82 (359)
T ss_dssp HHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT----------SS-EEEEES
T ss_pred HHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCC------C---CCCeeeecC
Confidence 68899999999998887777665 34444444 6 899999963
No 171
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=54.26 E-value=62 Score=21.48 Aligned_cols=57 Identities=19% Similarity=0.100 Sum_probs=34.9
Q ss_pred CcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEe
Q psy17183 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 22 gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~ 101 (145)
++.-++..+++.+...+|.+.+.+.+ + ++.-.. .. .+. ..+.|+.||+|.......
T Consensus 62 ~~~h~af~v~~~~~v~~~~~~l~~~G------~---~~~~~~-~~-------------~~~-~~~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 62 GLGHIAWRASSPEALERRVAALEASG------L---GIGWIE-GD-------------PGH-GKAYRFRSPDGHPMELYW 117 (121)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHHHcC------C---cccccc-CC-------------CCC-cceEEEECCCCCEEEEEE
Confidence 45557777777777888877766554 4 331100 00 011 246799999998887765
Q ss_pred e
Q psy17183 102 S 102 (145)
Q Consensus 102 ~ 102 (145)
+
T Consensus 118 ~ 118 (121)
T cd09013 118 E 118 (121)
T ss_pred e
Confidence 4
No 172
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=52.96 E-value=36 Score=28.63 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=34.7
Q ss_pred HHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCch
Q psy17183 10 LKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTH 67 (145)
Q Consensus 10 ~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~ 67 (145)
.++. .++.+.|.+++=|++.+.++.+++.+ +++. . +.|+++|.+-
T Consensus 37 v~QI--~~L~~aGceiVRvavp~~~~A~al~~-I~~~-------~---~iPlVADIHF 81 (346)
T TIGR00612 37 VAQI--RALEEAGCDIVRVTVPDRESAAAFEA-IKEG-------T---NVPLVADIHF 81 (346)
T ss_pred HHHH--HHHHHcCCCEEEEcCCCHHHHHhHHH-HHhC-------C---CCCEEEeeCC
Confidence 3444 36889999999999999888888765 3332 6 8999999753
No 173
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=52.59 E-value=22 Score=21.33 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=20.0
Q ss_pred CccEE-ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEE
Q psy17183 58 IVPLL-SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSM 99 (145)
Q Consensus 58 ~fpll-sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~ 99 (145)
.|-.+ .|...++++.||+. +.|+.+| +|++++.
T Consensus 32 ~~~~id~~~~~~l~~~~~i~------~vPti~i---~~~~~~~ 65 (67)
T cd02973 32 SAEMIDAAEFPDLADEYGVM------SVPAIVI---NGKVEFV 65 (67)
T ss_pred EEEEEEcccCHhHHHHcCCc------ccCEEEE---CCEEEEe
Confidence 44433 33456778888886 3688655 4566654
No 174
>PRK06184 hypothetical protein; Provisional
Probab=50.33 E-value=45 Score=28.63 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=39.2
Q ss_pred EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcccccc
Q psy17183 61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDS 125 (145)
Q Consensus 61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~ 125 (145)
.+.|..+.+.+.|++.. .+.+||-|||.|.+.... ...+.+.+.++++-..++
T Consensus 447 ~~~d~~g~~~~~~~~~~-------~~~~lvRPDg~v~~~~~~-----~~~~~~~~~l~~~~~~~~ 499 (502)
T PRK06184 447 DLVDDAGHFRDAYGLTG-------GTLVLVRPDGYVGLIAAG-----DDAAALEAYLARVGLGRK 499 (502)
T ss_pred ceeCCCccHHHHhcCCC-------CcEEEECCCcceEEEecC-----CCHHHHHHHHHHhcCCCc
Confidence 35688999999998863 467999999999876322 246778888887755443
No 175
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=49.99 E-value=66 Score=22.02 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=16.1
Q ss_pred eEEEEECCCCcEEEEEeec
Q psy17183 85 RAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~ 103 (145)
++.|+.||+|.......+.
T Consensus 105 ~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 105 RSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred eEEEEECCCCCEEEEecCC
Confidence 6899999999998877654
No 176
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=49.87 E-value=82 Score=21.58 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=21.4
Q ss_pred ceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
.++.|+.||+|.......+. ..|-+...+.
T Consensus 97 ~~~~~f~DPdG~~iEl~~~~------~~~~~~~~~~ 126 (131)
T cd08363 97 RKSIYFTDPDGHKLEVHTGT------LAERLAYYKK 126 (131)
T ss_pred ceEEEEECCCCCEEEEecCc------HHHHHHHHhc
Confidence 37899999999998777654 3455555543
No 177
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=49.37 E-value=26 Score=28.81 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=25.3
Q ss_pred ceEEEEECCCCcEEEEEeecCCCCCC---HHHHHHHHH
Q psy17183 84 LRAYYIIDKRGYLRSMNVSDIQVGRN---LKEILRQVE 118 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~~~~~~~~~~---~~ell~~i~ 118 (145)
.=..|+||++|+++|....+..++.+ .+++++.+.
T Consensus 104 ~d~vf~vd~~G~~vy~~~~d~~t~~~~~~~~~L~~~i~ 141 (295)
T COG3322 104 LDGVFVVDPSGKLVYSKLVDQETATELPLPESLLEDIR 141 (295)
T ss_pred ccEEEEECCCCCEEEEeeeccccccccCCcHHHHHHHh
Confidence 35789999999999999876544332 356666665
No 178
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=49.26 E-value=34 Score=27.08 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=28.4
Q ss_pred chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183 66 THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118 (145)
Q Consensus 66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~ 118 (145)
+.++++.+|+. | .|+.|+.|.+|++..+ .|.. ..+++.+.|.
T Consensus 208 n~~l~~~lGv~----G--TPaiv~~d~~G~~~~v-~G~~----~~~~L~~~l~ 249 (251)
T PRK11657 208 NQKLMDDLGAN----A--TPAIYYMDKDGTLQQV-VGLP----DPAQLAEIMG 249 (251)
T ss_pred HHHHHHHcCCC----C--CCEEEEECCCCCEEEe-cCCC----CHHHHHHHhC
Confidence 55677778876 3 6999999999976533 3543 2466666553
No 179
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=48.61 E-value=75 Score=20.76 Aligned_cols=19 Identities=16% Similarity=0.231 Sum_probs=15.1
Q ss_pred ceEEEEECCCCcEEEEEee
Q psy17183 84 LRAYYIIDKRGYLRSMNVS 102 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~~~ 102 (145)
.+..++.||+|.......+
T Consensus 99 ~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 99 GYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred ceEEEEECCCCCEEEEEec
Confidence 3578999999998877654
No 180
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=48.02 E-value=45 Score=28.98 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=34.8
Q ss_pred EecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 62 LSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 62 lsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
+.|.++.+++.||+.. ...+||-|||.|.+.+... ..+.+.+.+++
T Consensus 498 ~~d~~~~~~~~~~~~~-------~~~~LvRPDg~va~~~~~~-----~~~~~~~~l~~ 543 (547)
T PRK08132 498 LEDADGLAAERYDARP-------GTVYLIRPDQHVAARWRTP-----DAAAVRAALAR 543 (547)
T ss_pred ccCcccHHHHHhCCCC-------CeEEEECCCceEEEEecCC-----CHHHHHHHHHH
Confidence 5588899999998863 5689999999999875432 35667776665
No 181
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=47.98 E-value=76 Score=20.67 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=11.1
Q ss_pred eEEEEECCCCcEEE
Q psy17183 85 RAYYIIDKRGYLRS 98 (145)
Q Consensus 85 p~tfIID~dG~I~~ 98 (145)
+..|+.||+|.+..
T Consensus 110 ~~~~~~DPdG~~iE 123 (125)
T cd07241 110 YESVILDPEGNRIE 123 (125)
T ss_pred EEEEEECCCCCEEE
Confidence 46789999998764
No 182
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=47.71 E-value=80 Score=20.88 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=14.1
Q ss_pred eEEEEECCCCcEEEEEe
Q psy17183 85 RAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~ 101 (145)
+..|+-||+|.+...+.
T Consensus 102 ~~~~~~DPdG~~iE~~~ 118 (122)
T cd07265 102 RRVRFQLPSGHTMELYA 118 (122)
T ss_pred eEEEEECCCCCEEEEEE
Confidence 57899999999887654
No 183
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=47.65 E-value=97 Score=21.80 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=33.1
Q ss_pred CcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEe
Q psy17183 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 22 gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~ 101 (145)
++.-+++.+++.+...++.+.+++.+ ++++.++... +. | ..+..|+.||+|.......
T Consensus 59 ~~~hiaf~v~d~~~l~~~~~~l~~~G-----------i~~~~~~~~~-----~~-----~-~~~~~yf~DPdG~~iE~~~ 116 (144)
T cd07239 59 SLNHVAFEMPSIDEVMRGIGRMIDKG-----------IDILWGPGRH-----GP-----G-DNTFAYFLDPGGFVIEYTS 116 (144)
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHcC-----------CceeeCCccc-----CC-----C-CCEEEEEECCCCcEEEecc
Confidence 34457777777777766666655443 3444433110 00 1 1345789999998875443
No 184
>PHA02762 hypothetical protein; Provisional
Probab=47.64 E-value=54 Score=20.18 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=16.4
Q ss_pred eEEEEECCCCcEEEEEeecC
Q psy17183 85 RAYYIIDKRGYLRSMNVSDI 104 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~~ 104 (145)
=.|+=||.+|+|.|..+.+.
T Consensus 29 fvtigide~g~iayisiep~ 48 (62)
T PHA02762 29 FVTIGIDENDKISYISIEPL 48 (62)
T ss_pred EEEEeECCCCcEEEEEeccc
Confidence 35778999999999988764
No 185
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=47.63 E-value=79 Score=20.79 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=34.3
Q ss_pred CcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEe
Q psy17183 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 22 gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~ 101 (145)
+..-+++.+++.+...++.+.+.+.+ +++...+... ..++ ..+..|+.||+|.....+.
T Consensus 58 ~~~h~~f~v~~~~dl~~~~~~l~~~G-----------~~~~~~~~~~--~~~~--------~~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 58 GLNHLGVQVDSAEEVAEAKARAEAAG-----------LPTFKEEDTT--CCYA--------VQDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred CeeEEEEEeCCHHHHHHHHHHHHHcC-----------CeEEccCCcc--cccC--------CcceEEEECCCCCEEEEEE
Confidence 44556777777666777777665543 3333322110 0011 1367899999999886654
No 186
>KOG2116|consensus
Probab=47.23 E-value=78 Score=29.10 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=42.6
Q ss_pred HHHHHHhhhhhhhcCCcEEEEEeC---CCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhC
Q psy17183 7 CDVLKLVRKEILIVSPFQIIAVSV---DSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYG 74 (145)
Q Consensus 7 ~~~~~~~~~~~f~~~gv~vi~VS~---D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg 74 (145)
..++++| .+.+++|++++=+|. ......+.|...+.+.+ ..|| .=|++.=+++-++..|.
T Consensus 561 ~GVAkLy--t~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG----~~LP--dGPViLSPd~lf~Al~R 623 (738)
T KOG2116|consen 561 TGVAKLY--TKIKENGYKILYLSARAIGQADSTRQYLKNVEQDG----KKLP--DGPVILSPDSLFAALHR 623 (738)
T ss_pred hhHHHHH--HHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcC----ccCC--CCCEEeCCCcchHHHHH
Confidence 3567888 589999999999975 35666788877765554 2365 55777778877776653
No 187
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=47.22 E-value=58 Score=20.81 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=10.8
Q ss_pred ceEEEEECCCCcEEE
Q psy17183 84 LRAYYIIDKRGYLRS 98 (145)
Q Consensus 84 ~p~tfIID~dG~I~~ 98 (145)
.+..+|.||+|.+..
T Consensus 92 ~~~~~~~DPdG~~ie 106 (108)
T PF12681_consen 92 QRSFYFIDPDGNRIE 106 (108)
T ss_dssp EEEEEEE-TTS-EEE
T ss_pred eEEEEEECCCCCEEE
Confidence 478999999998764
No 188
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=47.22 E-value=77 Score=23.57 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=33.8
Q ss_pred EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCC-CC--CCHHHHHHHHH
Q psy17183 61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQ-VG--RNLKEILRQVE 118 (145)
Q Consensus 61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~-~~--~~~~ell~~i~ 118 (145)
+-+|.. .++..|++. ..|+.+|+ ++|+++...+|... .+ -+.+.|...|.
T Consensus 120 Vd~d~~-~l~~~f~v~------~vPTllly-k~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 120 IRASAT-GASDEFDTD------ALPALLVY-KGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred Eeccch-hhHHhCCCC------CCCEEEEE-ECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 334444 788899887 47998888 89999998887643 22 24455555443
No 189
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=46.50 E-value=35 Score=23.23 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=18.5
Q ss_pred CchHHHHHhCCCccCCCCcceEEEEECCCC
Q psy17183 65 STHAISKTYGCYLSSAGHSLRAYYIIDKRG 94 (145)
Q Consensus 65 ~~~~va~~yg~~~~~~g~~~p~tfIID~dG 94 (145)
...++++.|++. ..|+.+++.+.+
T Consensus 66 ~~~~~~~~~~i~------~~Pt~~lf~~~~ 89 (114)
T cd02992 66 ENVALCRDFGVT------GYPTLRYFPPFS 89 (114)
T ss_pred hhHHHHHhCCCC------CCCEEEEECCCC
Confidence 456789999987 379999995554
No 190
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=45.82 E-value=1.3e+02 Score=26.98 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=53.7
Q ss_pred hhcCCcEEEEEeCCCH---HHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEEC---
Q psy17183 18 LIVSPFQIIAVSVDSH---LAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIID--- 91 (145)
Q Consensus 18 f~~~gv~vi~VS~D~~---~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID--- 91 (145)
+..-.+.|+-|+.+.. +..++..+.+++.+ + |.+..|.++++.++|.-.+ ..| .|-.++||
T Consensus 432 LAPvQVaVLPLs~~~~~l~eyAkeI~~~L~~~G------i----~rv~~DdsesIGKKyRraD-eiG--iPy~ITVD~~T 498 (539)
T PRK14894 432 LAPIKVAVFPLKRNHEGLVATAKAVRRQLQVGG------R----MRTVYDDTGAIGKLYRRQD-EIG--TPFCITVDFDT 498 (539)
T ss_pred CCCceEEEEeccccccchHHHHHHHHHHHHHCC------C----ceEEEcCCCCHhHHHHhhh-ccC--CCEEEEEeccc
Confidence 3344566777765332 33444444443332 2 5888998999999996433 234 69999996
Q ss_pred -CC-------CcEEEEEeecCCC-CCCHHHHHHHHHh
Q psy17183 92 -KR-------GYLRSMNVSDIQV-GRNLKEILRQVEA 119 (145)
Q Consensus 92 -~d-------G~I~~~~~~~~~~-~~~~~ell~~i~~ 119 (145)
.| |.|--........ .-+.+++++.|..
T Consensus 499 l~dGdkE~e~gTVTVR~RDs~eQ~rV~ideli~~L~~ 535 (539)
T PRK14894 499 IGQGKDPALAGTVTVRDRDTMAQERVPISELEAYLRD 535 (539)
T ss_pred cccccchhhcCeEEEEEeCCCeEEEEEHHHHHHHHHH
Confidence 22 6776555554332 2368888887764
No 191
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=45.68 E-value=1.4e+02 Score=23.25 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=32.3
Q ss_pred CcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEe
Q psy17183 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 22 gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~ 101 (145)
++.-++..+++.+...++.+++++.+ + .+....+. + ..++.|+-||+|.+.....
T Consensus 60 ~~~hiaf~v~~~~dl~~~~~~l~~~G------v---~v~~~~~~---------------~-~~~~~~~~DPdG~~iEl~~ 114 (294)
T TIGR02295 60 ALSYIGFRVSKEEDLDKAADFFQKLG------H---PVRLVRDG---------------G-QPEALRVEDPFGYPIEFYF 114 (294)
T ss_pred CccEEEEEeCCHHHHHHHHHHHHhcC------C---cEEeecCC---------------C-CceEEEEECCCCCEEEEEE
Confidence 34456667777777777777665554 3 32221110 1 1367788888888876654
No 192
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=45.43 E-value=87 Score=20.60 Aligned_cols=56 Identities=14% Similarity=0.024 Sum_probs=33.3
Q ss_pred CcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEe
Q psy17183 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 22 gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~ 101 (145)
|..-+++.+++.+...++.+++.+.+ + .+ .. + .. .+ ..++.|+.||+|.......
T Consensus 64 ~~~hi~f~v~~~~~v~~~~~~l~~~g------~---~~--~~-~----------~~--~~-~~~~~~~~DPdG~~iEi~~ 118 (125)
T cd07255 64 GLYHFAILLPSRADLAAALRRLIELG------I---PL--VG-A----------SD--HL-VSEALYLSDPEGNGIEIYA 118 (125)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHcC------C---ce--ec-c----------cc--cc-ceeEEEEECCCCCEEEEEE
Confidence 45566777777777777777665543 3 22 10 1 00 11 1267899999999887654
Q ss_pred e
Q psy17183 102 S 102 (145)
Q Consensus 102 ~ 102 (145)
.
T Consensus 119 ~ 119 (125)
T cd07255 119 D 119 (125)
T ss_pred e
Confidence 3
No 193
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=45.35 E-value=28 Score=22.91 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=23.3
Q ss_pred CccEE-ecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEE
Q psy17183 58 IVPLL-SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSM 99 (145)
Q Consensus 58 ~fpll-sD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~ 99 (145)
.|-++ .|...++++.||+. ..|++++ +|++++.
T Consensus 45 ~~~~vd~~~~~e~a~~~~V~------~vPt~vi---dG~~~~~ 78 (89)
T cd03026 45 EHEMIDGALFQDEVEERGIM------SVPAIFL---NGELFGF 78 (89)
T ss_pred eEEEEEhHhCHHHHHHcCCc------cCCEEEE---CCEEEEe
Confidence 55554 23466799999998 4788865 6887764
No 194
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=44.00 E-value=87 Score=20.21 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.1
Q ss_pred eEEEEECCCCcEEEEEee
Q psy17183 85 RAYYIIDKRGYLRSMNVS 102 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~ 102 (145)
+..|+.||+|.+.....+
T Consensus 97 ~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 97 RGLRFQDPDGHLLELFVE 114 (117)
T ss_pred eEEEEECCCCCEEEEEEc
Confidence 688999999999877654
No 195
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=43.48 E-value=24 Score=22.36 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=12.8
Q ss_pred EEEEECCCCcEEEEEe
Q psy17183 86 AYYIIDKRGYLRSMNV 101 (145)
Q Consensus 86 ~tfIID~dG~I~~~~~ 101 (145)
..+++|++|+|++...
T Consensus 7 ~i~v~D~~~~i~~~N~ 22 (110)
T PF08448_consen 7 GIFVIDPDGRIVYANQ 22 (110)
T ss_dssp EEEEEETTSBEEEE-H
T ss_pred eeEEECCCCEEEEEHH
Confidence 4688999999998765
No 196
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=43.29 E-value=63 Score=21.22 Aligned_cols=17 Identities=12% Similarity=0.366 Sum_probs=13.7
Q ss_pred ceEEEEECCCCcEEEEE
Q psy17183 84 LRAYYIIDKRGYLRSMN 100 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~ 100 (145)
.+..|+.||||.+....
T Consensus 107 ~~~~~~~DPdG~~iE~~ 123 (125)
T cd08357 107 QETFFLKDPSGNALEFK 123 (125)
T ss_pred eeEEEEECCCCCEEEEe
Confidence 37899999999887553
No 197
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=42.51 E-value=1.7e+02 Score=24.35 Aligned_cols=102 Identities=12% Similarity=0.117 Sum_probs=57.0
Q ss_pred HHHHhhhhhhhcCCcEEEEEe-CCCHH---HHHHHHHHHhhcCCCCCCCCCCCCcc--EEecCchHHHHHhCCCc-----
Q psy17183 9 VLKLVRKEILIVSPFQIIAVS-VDSHL---AHLAWTKTLTATSSNRSAIDPSKIVP--LLSDSTHAISKTYGCYL----- 77 (145)
Q Consensus 9 ~~~~~~~~~f~~~gv~vi~VS-~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~fp--llsD~~~~va~~yg~~~----- 77 (145)
|.+.- ++|.+.|++|+..+ .+..+ ...+|.+.+++++ + +.| .+.+.--++-.+|.-..
T Consensus 79 l~~~r--~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~------i---pvp~~~~v~t~~el~~a~~~l~~~~~~ 147 (329)
T PF15632_consen 79 LAAHR--DEFEALGVKLLTASSAETLELADDKAAFYEFMEANG------I---PVPPYWRVRTADELKAAYEELRFPGQP 147 (329)
T ss_pred HHHHH--HHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCC------C---CCCCEEEeCCHHHHHHHHHhcCCCCce
Confidence 55554 68999999999832 22211 2234455544454 5 444 44555455544454321
Q ss_pred ----cCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 78 ----SSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 78 ----~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
+..|..-++..+||.+..-...+..+....-+.++++++++...
T Consensus 148 ~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~ 195 (329)
T PF15632_consen 148 LCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSE 195 (329)
T ss_pred EEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccC
Confidence 12354568999999765444344443333336788888887553
No 198
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=42.51 E-value=1.1e+02 Score=20.96 Aligned_cols=90 Identities=12% Similarity=0.160 Sum_probs=47.7
Q ss_pred hhhcCCcEEEEEeCC---CHHHHHHHHHHHh----hcCCCCCCCCCCCCccEEecCc--hHHHHHhCCCccCCCCcceEE
Q psy17183 17 ILIVSPFQIIAVSVD---SHLAHLAWTKTLT----ATSSNRSAIDPSKIVPLLSDST--HAISKTYGCYLSSAGHSLRAY 87 (145)
Q Consensus 17 ~f~~~gv~vi~VS~D---~~~~~~~~~~~~~----~~~~~~~~~~~~~~fpllsD~~--~~va~~yg~~~~~~g~~~p~t 87 (145)
.+...+..++-+|.| +++....|...++ ++. | .++ .| ++.|.+ +.+++.||+..+ .+ -.|+.
T Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk--~-gki---~F-v~~D~~~~~~~l~~fgl~~~-~~-~~P~~ 81 (111)
T cd03073 11 QFTKKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFP--D-RKL---NF-AVADKEDFSHELEEFGLDFS-GG-EKPVV 81 (111)
T ss_pred HhccCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCc--C-CeE---EE-EEEcHHHHHHHHHHcCCCcc-cC-CCCEE
Confidence 455666666666552 3343344433332 222 1 124 34 345553 348888998853 11 26999
Q ss_pred EEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 88 YIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 88 fIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
.|++.++ -+|...++.. +.+.|.+.++.
T Consensus 82 ~i~~~~~-~KY~~~~~~~---t~e~i~~F~~~ 109 (111)
T cd03073 82 AIRTAKG-KKYVMEEEFS---DVDALEEFLED 109 (111)
T ss_pred EEEeCCC-CccCCCcccC---CHHHHHHHHHH
Confidence 9999877 4555222210 45677766654
No 199
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=42.37 E-value=25 Score=22.36 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=14.4
Q ss_pred eEEEEECCCCcEEEEEe
Q psy17183 85 RAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~ 101 (145)
-..+++|++|+|.+..-
T Consensus 12 ~~i~~~d~~g~I~~~N~ 28 (113)
T PF00989_consen 12 DGIFVIDEDGRILYVNQ 28 (113)
T ss_dssp SEEEEEETTSBEEEECH
T ss_pred ceEEEEeCcCeEEEECH
Confidence 46899999999998865
No 200
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=41.39 E-value=31 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=28.4
Q ss_pred eEEEEECCCCcEEEEEeecCC-CCCCHHHHHHHHHhc
Q psy17183 85 RAYYIIDKRGYLRSMNVSDIQ-VGRNLKEILRQVEAF 120 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~~~-~~~~~~ell~~i~~l 120 (145)
...|.||+||.|-.=.+|... .|.+.+|+.+.|++.
T Consensus 20 ~~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~ 56 (165)
T TIGR03027 20 SGSVPVRPDGKITTPLVGDLVASGKTPTQLARDIEEK 56 (165)
T ss_pred ccceEECCCCeEeecccCeEEECCCCHHHHHHHHHHH
Confidence 346899999999999998864 378888888776543
No 201
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=40.74 E-value=95 Score=22.63 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=35.7
Q ss_pred ccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 59 VPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 59 fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
+.+.+..+.+-..+..-+.....-+-|+.-|+ +||.+++..--..-.|++.++|.+.|..
T Consensus 71 vTVFAGqDkEAt~~aR~yf~~~pPSSPS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~ 130 (136)
T PF06491_consen 71 VTVFAGQDKEATAKAREYFEPYPPSSPSIALF-KDGELVHFIERHHIEGRPAEEIAENLQD 130 (136)
T ss_dssp EEEETTTSHHHHHHHHHTSTTS---SSEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHH
T ss_pred EEeccCCCHHHHHHHHHhcCCCCCCCchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHH
Confidence 66777776665433322221111256888888 9999998765544568888888776654
No 202
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=39.22 E-value=1.2e+02 Score=20.60 Aligned_cols=61 Identities=13% Similarity=-0.004 Sum_probs=36.3
Q ss_pred CCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEE
Q psy17183 21 SPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMN 100 (145)
Q Consensus 21 ~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~ 100 (145)
.|+.=+|+++++.+...++.+.+++.+ + ++...+. + .. . + .....|+.||+|..+...
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G------~-----~~~~~~~----~-~~-~----~-~~~~~y~~DP~G~~iEl~ 118 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAG------Y-----QTGWGPG----R-HR-I----G-SNYFWYFRDPWGGEVEYG 118 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcC------C-----ccccCCC----C-cC-C----C-ccEEEEEECCCCCEEEEE
Confidence 456667888888888877777765553 3 2221110 0 00 0 1 134679999999987766
Q ss_pred eec
Q psy17183 101 VSD 103 (145)
Q Consensus 101 ~~~ 103 (145)
...
T Consensus 119 ~~~ 121 (134)
T cd08360 119 ADM 121 (134)
T ss_pred ccc
Confidence 543
No 203
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=38.88 E-value=42 Score=20.59 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=16.0
Q ss_pred cceEEEEECCCCcEEEEEe
Q psy17183 83 SLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 83 ~~p~tfIID~dG~I~~~~~ 101 (145)
+.|-+|.+|.+|+|..+.-
T Consensus 41 ~dRLnv~~D~~g~I~~v~C 59 (60)
T PF11720_consen 41 PDRLNVEVDDDGVITRVRC 59 (60)
T ss_pred CCcEEEEECCCCcEEEEec
Confidence 4699999999999987653
No 204
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=38.65 E-value=1.5e+02 Score=25.22 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=31.3
Q ss_pred CCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeec
Q psy17183 49 NRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 49 ~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~ 103 (145)
||.. + |+|++.|.+.+.++.++.- -..-++|++|.++....-+
T Consensus 71 ~G~~-w---piPi~L~v~~e~~~~l~~g--------~~v~L~~~eg~~~a~l~v~ 113 (383)
T TIGR00339 71 DGVL-F---SVPITLDIDDEDADDIKLG--------DRILLTDDKGQPLAILTIE 113 (383)
T ss_pred CCCC-c---ceeEEEeCCHHHHhhCCCC--------CeEEEECCCCCEEEEEEee
Confidence 4543 7 8999999999988877543 3556778879888776543
No 205
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=38.60 E-value=32 Score=21.42 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.1
Q ss_pred EEEEECCCCcEEEEEe
Q psy17183 86 AYYIIDKRGYLRSMNV 101 (145)
Q Consensus 86 ~tfIID~dG~I~~~~~ 101 (145)
+.+++|++|+|.+..-
T Consensus 3 ~i~i~d~~g~i~~~N~ 18 (104)
T PF13426_consen 3 GIFILDPDGRILYVNP 18 (104)
T ss_dssp EEEEEETTSBEEEE-H
T ss_pred EEEEECCcCcEEehhH
Confidence 4799999999998865
No 206
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=37.82 E-value=65 Score=23.46 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=26.0
Q ss_pred CccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEE
Q psy17183 58 IVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLR 97 (145)
Q Consensus 58 ~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~ 97 (145)
+|-...|....-..+|... |++.--+|+||+.|+|.
T Consensus 120 ~f~~~~gn~~~D~~~y~~~----gi~~~~i~~i~~~~~~~ 155 (157)
T smart00775 120 PFYAGFGNRITDVISYSAV----GIPPSRIFTINPKGEVH 155 (157)
T ss_pred CEEEEeCCCchhHHHHHHc----CCChhhEEEECCCCccc
Confidence 4545566666677777654 55667799999999985
No 207
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=36.56 E-value=1.6e+02 Score=21.04 Aligned_cols=19 Identities=21% Similarity=0.224 Sum_probs=15.0
Q ss_pred eEEEEECCCCcEEEEEeec
Q psy17183 85 RAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~ 103 (145)
...|+.||+|.+.....+.
T Consensus 106 ~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 106 FFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred eEEEEECCCCCeEEEeecC
Confidence 5689999999998766543
No 208
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=35.74 E-value=15 Score=30.79 Aligned_cols=16 Identities=13% Similarity=0.528 Sum_probs=12.6
Q ss_pred CCcccCCCCCCCCCcc
Q psy17183 126 TDTQCPVNWTTGQPSV 141 (145)
Q Consensus 126 ~~~~~p~~w~~~~~~~ 141 (145)
+-.+|+|+|++|.++.
T Consensus 180 ~~~~t~I~WK~GkdlT 195 (337)
T PTZ00007 180 NTVATEIDWKQGKDVT 195 (337)
T ss_pred cceeeeceeeCCCCch
Confidence 4468999999996653
No 209
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=34.84 E-value=62 Score=18.80 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=8.7
Q ss_pred hhhcCCcEEEEEeCCC
Q psy17183 17 ILIVSPFQIIAVSVDS 32 (145)
Q Consensus 17 ~f~~~gv~vi~VS~D~ 32 (145)
.|.+.++.+.-++.+.
T Consensus 19 ~L~~~~i~~~~~di~~ 34 (72)
T cd02066 19 LLESLGIEFEEIDILE 34 (72)
T ss_pred HHHHcCCcEEEEECCC
Confidence 4555566555555543
No 210
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=34.83 E-value=1.6e+02 Score=20.76 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=36.3
Q ss_pred CCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEE
Q psy17183 21 SPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMN 100 (145)
Q Consensus 21 ~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~ 100 (145)
.++.-+++.+++.+...++.+.+++.+ + ++...+. . .+. + ..++.|+-||+|......
T Consensus 72 ~g~~Hiaf~V~d~~~l~~~~~~L~~~G------~-----~v~~~~~-~----~~~-----~-~~~~~y~~DPdG~~iEl~ 129 (154)
T cd07237 72 KRIHHLMLEVTSLDDVGRAYDRVRARG------I-----PIAMTLG-R----HTN-----D-RMLSFYVRTPSGFAIEYG 129 (154)
T ss_pred ceeEEEEEEcCCHHHHHHHHHHHHHcC------C-----ceeccCC-c----cCC-----C-CcEEEEEECCCCcEEEec
Confidence 345557777777777767766665543 3 3332111 0 000 1 246789999999988776
Q ss_pred eec
Q psy17183 101 VSD 103 (145)
Q Consensus 101 ~~~ 103 (145)
.+.
T Consensus 130 ~~~ 132 (154)
T cd07237 130 WGG 132 (154)
T ss_pred cCc
Confidence 554
No 211
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=34.26 E-value=1e+02 Score=25.47 Aligned_cols=51 Identities=12% Similarity=-0.006 Sum_probs=33.9
Q ss_pred HHHHHHHhhhhhhhcCCcEEEEEeCCC--------HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchH
Q psy17183 6 ACDVLKLVRKEILIVSPFQIIAVSVDS--------HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHA 68 (145)
Q Consensus 6 ~~~~~~~~~~~~f~~~gv~vi~VS~D~--------~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~ 68 (145)
...+.+.+ ..+++.|+.|+.|.+-+ ....++.++.+++.+ + .|.++|.+.+
T Consensus 250 r~~~l~~L--~~~~~~G~~Vl~IDY~~~~~~~~~n~~~~~~~~~~~~~~G------f----~pYVsd~~l~ 308 (315)
T TIGR01370 250 RQRRLLAL--YRLWQQGKFVLTVDYVDDGTKTNENPARMKDAAEKARAAG------L----IPYVAESDLE 308 (315)
T ss_pred HHHHHHHH--HHHHHCCCcEEEEEecCCcccchhhHHHHHHHHHHHHHcC------C----eeeecCchhc
Confidence 33444545 36778899999997533 245577777777775 5 7788886543
No 212
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=33.80 E-value=1.5e+02 Score=19.87 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.6
Q ss_pred eEEEEECCCCcEEEEEeec
Q psy17183 85 RAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~ 103 (145)
+..|+.||+|.........
T Consensus 103 ~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 103 WSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred eEEEEECCCCCEEEEEEcC
Confidence 6789999999998776554
No 213
>PRK08671 methionine aminopeptidase; Provisional
Probab=33.66 E-value=18 Score=29.20 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=17.2
Q ss_pred CccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEE
Q psy17183 58 IVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLR 97 (145)
Q Consensus 58 ~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~ 97 (145)
+||+|.|..+++-.+ --.|++|.++|.++
T Consensus 260 ~yp~l~e~~~~~vaq-----------~~~Tv~v~~~g~~~ 288 (291)
T PRK08671 260 GYPVLKEVKGGLVSQ-----------AEHTVIVTEDGCEV 288 (291)
T ss_pred cCCccEecCCCEEEE-----------EEEEEEECCCCcEE
Confidence 566666665443221 24677777888765
No 214
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=33.65 E-value=93 Score=21.96 Aligned_cols=50 Identities=8% Similarity=-0.060 Sum_probs=34.2
Q ss_pred chHHHHHhCCCccCCCCcceEEEEECCCCcEEEE-EeecCCCCCCHHHHHHHHHhccccc
Q psy17183 66 THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSM-NVSDIQVGRNLKEILRQVEAFQLVD 124 (145)
Q Consensus 66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~-~~~~~~~~~~~~ell~~i~~l~~~~ 124 (145)
...+.+.||+... ..|+.++++.++. +|. +.++. +.+.+.+.++.....+
T Consensus 68 ~~~~~~~fgl~~~----~~P~v~i~~~~~~-KY~~~~~~~----t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 68 QLDLEEALNIGGF----GYPAMVAINFRKM-KFATLKGSF----SEDGINEFLRELSYGR 118 (130)
T ss_pred cHHHHHHcCCCcc----CCCEEEEEecccC-ccccccCcc----CHHHHHHHHHHHHcCC
Confidence 4459999998632 3699999999877 777 33443 3566777776665443
No 215
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=33.55 E-value=1e+02 Score=27.98 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=30.2
Q ss_pred hhhcCCcEEEEEeCCCHHHHHHH---HHHHhhcCCCCCCCCCCCCccEEecC
Q psy17183 17 ILIVSPFQIIAVSVDSHLAHLAW---TKTLTATSSNRSAIDPSKIVPLLSDS 65 (145)
Q Consensus 17 ~f~~~gv~vi~VS~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~fpllsD~ 65 (145)
++.+.|.++|=|++.+.+..++. ++.+++.+ . +.||++|.
T Consensus 49 ~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G------~---~iPLVADI 91 (611)
T PRK02048 49 RIIDAGGEYVRLTTQGVREAENLMNINIGLRSQG------Y---MVPLVADV 91 (611)
T ss_pred HHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcC------C---CCCEEEec
Confidence 67899999999999887766654 34433344 6 89999996
No 216
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=32.95 E-value=49 Score=26.87 Aligned_cols=34 Identities=6% Similarity=0.126 Sum_probs=25.3
Q ss_pred ceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccc
Q psy17183 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQL 122 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~ 122 (145)
-=.||+|+.+|+|-....|+. .+++-+.|+...+
T Consensus 231 GVmtF~Vn~~g~VYqkDLG~~-----t~~~A~ai~~FdP 264 (271)
T PF11453_consen 231 GVMTFMVNQDGQVYQKDLGPD-----TAAKAAAITSFDP 264 (271)
T ss_pred ceEEEEECCCCcEEecccCcc-----hHHHhhhhhccCC
Confidence 346999999999987777764 4566677776664
No 217
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=32.86 E-value=1.1e+02 Score=27.75 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=30.3
Q ss_pred hhhcCCcEEEEEeCCCHHHHHHH---HHHHhhcCCCCCCCCCCCCccEEecC
Q psy17183 17 ILIVSPFQIIAVSVDSHLAHLAW---TKTLTATSSNRSAIDPSKIVPLLSDS 65 (145)
Q Consensus 17 ~f~~~gv~vi~VS~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~fpllsD~ 65 (145)
.+.+.|.++|=|++.+.+..++. ++.+++.+ . +.||++|.
T Consensus 53 ~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g------~---~iPLVADI 95 (606)
T PRK00694 53 ALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQG------I---SIPLVADI 95 (606)
T ss_pred HHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccC------C---CCCEEeec
Confidence 67899999999999887766654 44444444 6 89999996
No 218
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=32.42 E-value=25 Score=22.10 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=12.6
Q ss_pred eEEEEECCCCcEEEEE
Q psy17183 85 RAYYIIDKRGYLRSMN 100 (145)
Q Consensus 85 p~tfIID~dG~I~~~~ 100 (145)
-..||+|++|+|+++-
T Consensus 54 g~~~ivd~~G~ii~hp 69 (81)
T PF02743_consen 54 GYAFIVDKNGTIIAHP 69 (81)
T ss_dssp BEEEEEETTSBBCE-S
T ss_pred EEEEEEECCCCEEEeC
Confidence 4689999999998663
No 219
>PF10622 Ehbp: Energy-converting hydrogenase B subunit P (EhbP); InterPro: IPR019597 Ehb (energy-converting hydrogenase B) is an methanogenic archaeal enzyme that functions in one of the metabolic pathways involved in methanol reduction to methane. This entry contains subunit P of Ehb.
Probab=32.35 E-value=21 Score=23.31 Aligned_cols=29 Identities=14% Similarity=-0.138 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhhhhcCCcEEEEEeCCCHH
Q psy17183 5 IACDVLKLVRKEILIVSPFQIIAVSVDSHL 34 (145)
Q Consensus 5 e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~ 34 (145)
+.|.|.+.|- ++.++.|..|+-|+.|+.+
T Consensus 36 dvPv~d~~WI-E~Hr~LGL~vvPv~~~ddf 64 (78)
T PF10622_consen 36 DVPVYDEEWI-EEHRKLGLIVVPVSEDDDF 64 (78)
T ss_pred eccccCHHHH-HHHHhCCeEEEeccccccH
Confidence 4566666554 6788899999999987654
No 220
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=32.34 E-value=1.7e+02 Score=20.45 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=31.6
Q ss_pred hhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc
Q psy17183 17 ILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST 66 (145)
Q Consensus 17 ~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~ 66 (145)
.+...|...|.+..++.+...+..+.+++.+ + ++.++.|..
T Consensus 43 ~W~~~G~~KiVl~~~~~~el~~l~~~a~~~~------l---~~~~v~DAG 83 (115)
T cd02430 43 AWEREGQKKIVLKVNSEEELLELKKKAKSLG------L---PTSLIQDAG 83 (115)
T ss_pred HHHhcCCcEEEEecCCHHHHHHHHHHHHHcC------C---CeEEEEeCC
Confidence 3467888889988888888888777766565 8 888888864
No 221
>KOG2507|consensus
Probab=32.32 E-value=91 Score=27.24 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.0
Q ss_pred cceEEEEECCCCcEEEEEeecCC
Q psy17183 83 SLRAYYIIDKRGYLRSMNVSDIQ 105 (145)
Q Consensus 83 ~~p~tfIID~dG~I~~~~~~~~~ 105 (145)
..|+.|+|+..|+-+.+..|...
T Consensus 77 ~vPs~ffIg~sGtpLevitg~v~ 99 (506)
T KOG2507|consen 77 SVPSIFFIGFSGTPLEVITGFVT 99 (506)
T ss_pred cccceeeecCCCceeEEeecccc
Confidence 68999999999999988877644
No 222
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=32.30 E-value=1.5e+02 Score=19.59 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=12.7
Q ss_pred eEEEEECCCCcEEEEE
Q psy17183 85 RAYYIIDKRGYLRSMN 100 (145)
Q Consensus 85 p~tfIID~dG~I~~~~ 100 (145)
+..|+.||||.+....
T Consensus 107 ~~~~~~DPdG~~ie~~ 122 (124)
T cd09012 107 YGRSFADLDGHLWEVL 122 (124)
T ss_pred EEEEEECCCCCEEEEE
Confidence 4679999999887543
No 223
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=32.06 E-value=1.4e+02 Score=22.98 Aligned_cols=36 Identities=11% Similarity=-0.119 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHH
Q psy17183 5 IACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKT 42 (145)
Q Consensus 5 e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~ 42 (145)
-.+.+.+.+ ++++++|+.++.+|.-+....+.+...
T Consensus 22 ~~~~~~~~i--~~~~~~gi~fv~aTGR~~~~~~~~~~~ 57 (249)
T TIGR01485 22 ALLRLNALL--EDHRGEDSLLVYSTGRSPHSYKELQKQ 57 (249)
T ss_pred HHHHHHHHH--HHhhccCceEEEEcCCCHHHHHHHHhc
Confidence 356777777 578899998888888888888887664
No 224
>PLN02734 glycyl-tRNA synthetase
Probab=31.98 E-value=2.5e+02 Score=25.94 Aligned_cols=87 Identities=18% Similarity=0.177 Sum_probs=49.9
Q ss_pred CcEEEEEeCCCH--HHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc-hHHHHHhCCCccCCCCcceEEEEECCCCcEEE
Q psy17183 22 PFQIIAVSVDSH--LAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST-HAISKTYGCYLSSAGHSLRAYYIIDKRGYLRS 98 (145)
Q Consensus 22 gv~vi~VS~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~-~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~ 98 (145)
.+.|+.++.+.. ....+....+++. .+.+..|.. .++.++|.-. ...| .|..++||.+|.|..
T Consensus 572 qVaIlPL~~~ee~~~~A~eLa~~LR~~-----------GIrVelDd~~~SIGKRyrrA-DeiG--IPf~ItIG~dgtVTI 637 (684)
T PLN02734 572 KCTVFPLVQNQQLNAVAKVISKELTAA-----------GISHKIDITGTSIGKRYART-DELG--VPFAVTVDSDGSVTI 637 (684)
T ss_pred EEEEEEecCChHHHHHHHHHHHHHHhC-----------CCEEEEECCCCCHhHHHHHH-HHcC--CCEEEEECCCCeEEE
Confidence 355666665431 2233334444333 355555654 4777777432 1235 599999999998877
Q ss_pred EEeecC-CCCCCHHHHHHHHHhccc
Q psy17183 99 MNVSDI-QVGRNLKEILRQVEAFQL 122 (145)
Q Consensus 99 ~~~~~~-~~~~~~~ell~~i~~l~~ 122 (145)
...... ...-..+++...|.++-.
T Consensus 638 RdRdsgeQ~rV~ldeLv~~I~~li~ 662 (684)
T PLN02734 638 RERDSKDQVRVPVEEVASVVKDLTD 662 (684)
T ss_pred EECCCCceEEeeHHHHHHHHHHHHc
Confidence 665332 112257788877766553
No 225
>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A ....
Probab=31.80 E-value=83 Score=23.34 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=26.0
Q ss_pred CCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEe
Q psy17183 49 NRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 49 ~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~ 101 (145)
||.- + ++|++.|.+.+.++....- -..-+.|++|+++....
T Consensus 73 ~G~~-w---piPI~L~v~~e~~~~l~~G--------~~v~L~~~~G~~~a~l~ 113 (160)
T PF14306_consen 73 DGTL-W---PIPIVLDVSEEEAKSLKEG--------DKVALRDPEGKPVAILE 113 (160)
T ss_dssp TSSB------S---EEECHHHHTTCTTT--------SEEEEEETTTEEEEEEE
T ss_pred CCCE-E---eEEEEEECCHHHHHhccCC--------CEEEEECCCCCEEEEEE
Confidence 4554 7 8999999998888874432 36778889898877754
No 226
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=31.79 E-value=64 Score=21.17 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=16.0
Q ss_pred eEEEEECCCCcEEEEEeec
Q psy17183 85 RAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~ 103 (145)
+..|+.||+|.....+.+.
T Consensus 92 ~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 92 DGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred CEEEEECCCCCEEEEecCC
Confidence 5789999999999887654
No 227
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=31.66 E-value=16 Score=28.61 Aligned_cols=16 Identities=19% Similarity=0.640 Sum_probs=9.6
Q ss_pred cCCcccCCCCCCCCCc
Q psy17183 125 STDTQCPVNWTTGQPS 140 (145)
Q Consensus 125 ~~~~~~p~~w~~~~~~ 140 (145)
....+|||+|++|.+.
T Consensus 148 ~~~~~t~I~Wk~gkd~ 163 (244)
T PF00956_consen 148 LKSESTPIDWKPGKDL 163 (244)
T ss_dssp EEEEE---EBSTTTCT
T ss_pred ceeeeecccccCCCCc
Confidence 3457899999999664
No 228
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=31.34 E-value=1.3e+02 Score=22.28 Aligned_cols=52 Identities=6% Similarity=0.050 Sum_probs=35.5
Q ss_pred eEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCC
Q psy17183 85 RAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTT 136 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~ 136 (145)
...+|.+++|++|-...+..-.....+.+++.|-++-..+++++.==+.|+.
T Consensus 3 ~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lIs~R~~ke~N~~e~k~ 54 (152)
T COG5030 3 KFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKN 54 (152)
T ss_pred EEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHHHcCCchhcccccccC
Confidence 4678999999999887764222223456777777777777777555555654
No 229
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=31.00 E-value=75 Score=22.37 Aligned_cols=36 Identities=6% Similarity=0.055 Sum_probs=27.6
Q ss_pred EEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeec
Q psy17183 61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 61 llsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~ 103 (145)
+=.|...++++.|++. +.|++.++ ++|+-.....|.
T Consensus 52 VDVDev~dva~~y~I~------amPtfvff-kngkh~~~d~gt 87 (114)
T cd02986 52 VDVDKVPVYTQYFDIS------YIPSTIFF-FNGQHMKVDYGS 87 (114)
T ss_pred EeccccHHHHHhcCce------eCcEEEEE-ECCcEEEEecCC
Confidence 3367788999999997 47998888 778776666653
No 230
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=31.00 E-value=2.6e+02 Score=21.84 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=14.8
Q ss_pred ceEEEEECCCCcEEEEEee
Q psy17183 84 LRAYYIIDKRGYLRSMNVS 102 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~~~ 102 (145)
.++.|+.||+|.....+.+
T Consensus 100 ~~~~~f~DPdGn~lEl~~~ 118 (286)
T TIGR03213 100 LGLIKFTDPGGNPLEIYYG 118 (286)
T ss_pred eEEEEEECCCCCEEEEEEc
Confidence 3678999999998876653
No 231
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=30.80 E-value=22 Score=27.07 Aligned_cols=14 Identities=14% Similarity=0.510 Sum_probs=11.4
Q ss_pred CcccCCCCCCCCCc
Q psy17183 127 DTQCPVNWTTGQPS 140 (145)
Q Consensus 127 ~~~~p~~w~~~~~~ 140 (145)
.+.|+|+|++|.++
T Consensus 112 ~~~t~I~Wk~gkn~ 125 (185)
T PTZ00008 112 VEVTKIKWKEGKSP 125 (185)
T ss_pred eeeeecccCCCCCc
Confidence 46799999999654
No 232
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=30.44 E-value=1.2e+02 Score=19.70 Aligned_cols=33 Identities=6% Similarity=0.121 Sum_probs=21.8
Q ss_pred eEEEEECCCCcEEEEEeecCCCC-CCHHHHHHHH
Q psy17183 85 RAYYIIDKRGYLRSMNVSDIQVG-RNLKEILRQV 117 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~~~~~-~~~~ell~~i 117 (145)
-.++.+|.+|.|+...+.+.-.. .+.++|-+.|
T Consensus 31 ~V~V~v~g~g~v~~i~i~~~~~~~~~~~~L~~~I 64 (93)
T PF02575_consen 31 LVTVTVNGNGEVVDIEIDPSALRPLDPEELEDLI 64 (93)
T ss_dssp TEEEEEETTS-EEEEEE-GGGGCTS-HHHHHHHH
T ss_pred EEEEEEecCceEEEEEEehHhhccCCHHHHHHHH
Confidence 36899999999999999876554 4555555443
No 233
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=30.32 E-value=1.1e+02 Score=20.29 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=16.4
Q ss_pred eEEEEECCCCcEEEEEeec
Q psy17183 85 RAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~ 103 (145)
...|+.||+|.....+.+.
T Consensus 93 ~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 93 DSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred cEEEEECCCCCEEEEEeCC
Confidence 5789999999999888765
No 234
>PHA01548 hypothetical protein
Probab=30.13 E-value=72 Score=23.43 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=24.1
Q ss_pred cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhccccccCCcccCCCCCCC
Q psy17183 83 SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137 (145)
Q Consensus 83 ~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~~~~~~~~~~p~~w~~~ 137 (145)
..+...+||+||+--.. ++ .-+...|+++- ++.-|+.|++.
T Consensus 103 dalrvvlidKdGkayha-~S--------QgVVssIQkii-----sIvGpapwt~E 143 (167)
T PHA01548 103 DALRVVLIDKDGKAYHA-VS--------QGVVSSIQKII-----SIVGPAPWTDE 143 (167)
T ss_pred eeeEEEEEccCCCEeee-eh--------HHHHHHHHHHH-----HHhCCCCCCCC
Confidence 56788999999986422 21 12333333332 45568888754
No 235
>PRK10200 putative racemase; Provisional
Probab=30.02 E-value=1.1e+02 Score=23.75 Aligned_cols=44 Identities=9% Similarity=0.005 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe
Q psy17183 5 IACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS 63 (145)
Q Consensus 5 e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls 63 (145)
-.+.|.+.. +.+.+.|+.+|+|..++.... .+.+++. + +.|++.
T Consensus 60 ~~~~l~~~~--~~L~~~g~~~iviaCNTah~~---~~~l~~~-------~---~iPii~ 103 (230)
T PRK10200 60 TGDILAEAA--LGLQRAGAEGIVLCTNTMHKV---ADAIESR-------C---SLPFLH 103 (230)
T ss_pred HHHHHHHHH--HHHHHcCCCEEEECCchHHHH---HHHHHHh-------C---CCCEee
Confidence 456677777 578999999999999875544 3444333 5 678776
No 236
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=29.90 E-value=1.4e+02 Score=21.47 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=23.3
Q ss_pred chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183 66 THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118 (145)
Q Consensus 66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~ 118 (145)
+.+.+..+|+. | .|+.+| +|+ +...|.. ..+++.++|+
T Consensus 156 ~~~~a~~~gv~----G--vP~~vv---~g~--~~~~G~~----~~~~l~~~l~ 193 (193)
T PF01323_consen 156 DTAEARQLGVF----G--VPTFVV---NGK--YRFFGAD----RLDELEDALQ 193 (193)
T ss_dssp HHHHHHHTTCS----S--SSEEEE---TTT--EEEESCS----SHHHHHHHH-
T ss_pred HHHHHHHcCCc----c--cCEEEE---CCE--EEEECCC----CHHHHHHHhC
Confidence 44556777776 3 588777 666 5566654 3667766653
No 237
>PF09048 Cro: Cro; InterPro: IPR000655 Bacteriophage lambda encodes two repressors: the Cro repressor that acts to turn off early gene transcription during the lytic cycle, and the lambda or cI repressor that is required to maintain lysogenic growth. Together the Cro and cI repressors form a helix-turn-helix (HTH) superfamily. The lambda Cro repressor binds to DNA as a highly flexible dimer. The crystal structure of the lambda Cro repressor [] reveals a HTH DNA-binding protein with an alpha/beta fold that differs from other Cro family members, possibly by an evolutionary fold change []. Most Cro proteins, such as Enterobacteria phage P22 Cro and Bacteriophage 434 Cro, have an all-alpha structure that is thought to be ancestral to lambda Cro, where the fourth and fifth helices are replaced by a beta-sheet, possibly as a result of secondary structure switching rather than by nonhomologous replacement []. This entry represents the lambda-type Cro repressor with an alpha/beta topology.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 5CRO_A 2ECS_A 2OVG_A 6CRO_A 1D1L_A 2ORC_A 1D1M_B 3ORC_A 1ORC_A 2A63_A ....
Probab=29.48 E-value=1.1e+02 Score=19.02 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=21.1
Q ss_pred hHHHHHhCCCccCC--C-CcceEEEEE-CCCCcEEEEEeecC
Q psy17183 67 HAISKTYGCYLSSA--G-HSLRAYYII-DKRGYLRSMNVSDI 104 (145)
Q Consensus 67 ~~va~~yg~~~~~~--g-~~~p~tfII-D~dG~I~~~~~~~~ 104 (145)
.+.|+.+|+....- . ...|-.||. .+||.+....+-+.
T Consensus 16 ~kaA~~lGV~Q~AIsKAlr~gR~I~v~~~~dGs~~A~EirpF 57 (59)
T PF09048_consen 16 AKAARALGVTQSAISKALRAGRNIFVTIMPDGSVEAEEIRPF 57 (59)
T ss_dssp HHHHHHHTS-HHHHHHHHHCT-EEEEEEETTSEEEEEEEEES
T ss_pred HHHHHHcCCcHHHHHHHHHcCCcEEEEEcCCCeEEEEEecCC
Confidence 34566666654310 0 023666665 89999988776554
No 238
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=29.15 E-value=1.9e+02 Score=19.81 Aligned_cols=41 Identities=17% Similarity=0.011 Sum_probs=30.2
Q ss_pred hhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc
Q psy17183 17 ILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST 66 (145)
Q Consensus 17 ~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~ 66 (145)
.+...|..-|++..++.+...+..+.+++.+ + ++.++.|..
T Consensus 44 ~W~~~g~~Kivlkv~~e~~L~~l~~~a~~~g------l---~~~~i~Dag 84 (116)
T PF01981_consen 44 EWENNGQKKIVLKVPSEEELLELAKKAKEAG------L---PHYLIRDAG 84 (116)
T ss_dssp HHHHTTTSEEEEEESSHHHHHHHHHHHHHTT----------SEEEEEETS
T ss_pred HHhcCCCceEEEEeCCHHHHHHHHHHHHHCC------C---CEEEEEECC
Confidence 3445788888888888888877777766666 8 898999875
No 239
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=28.19 E-value=1.5e+02 Score=22.48 Aligned_cols=42 Identities=10% Similarity=0.187 Sum_probs=29.5
Q ss_pred HHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCC---CCHHHHHHHHH
Q psy17183 70 SKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVG---RNLKEILRQVE 118 (145)
Q Consensus 70 a~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~---~~~~ell~~i~ 118 (145)
+..|++. ..|+.+|+ ++|.++...+|....| -+.+++...|.
T Consensus 145 ~~~~~i~------~lPTlliy-k~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 145 IPNYPDK------NLPTILVY-RNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred HhhCCCC------CCCEEEEE-ECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 5667765 47988888 9999999999875442 24566655553
No 240
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=28.19 E-value=87 Score=18.31 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=18.0
Q ss_pred HHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHH
Q psy17183 7 CDVLKLVRKEILIVSPFQIIAVSVDSHLAHLA 38 (145)
Q Consensus 7 ~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~ 38 (145)
|..-+..+ +.|++.|+..-.+..+..+..++
T Consensus 9 C~~C~~~~-~~L~~~~i~y~~~dv~~~~~~~~ 39 (60)
T PF00462_consen 9 CPYCKKAK-EFLDEKGIPYEEVDVDEDEEARE 39 (60)
T ss_dssp SHHHHHHH-HHHHHTTBEEEEEEGGGSHHHHH
T ss_pred CcCHHHHH-HHHHHcCCeeeEcccccchhHHH
Confidence 44444443 46778888877777665433333
No 241
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=28.16 E-value=2.3e+02 Score=20.35 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=34.8
Q ss_pred CcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEe
Q psy17183 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 22 gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~ 101 (145)
++.-+++.+++.....++++.+++.+ + . +..++.. .+.. .....|+.||+|.++....
T Consensus 69 ~~~hiaf~v~~~~~l~~~~~~l~~~G------v---~--i~~~p~~-----~~~~------~~~~~y~~DPdG~~iEl~~ 126 (166)
T cd09014 69 RLHHLAYALDTREDVLRAADIFLENG------I---F--IEAGPGK-----HGIQ------QTFFLYVYEPGGNRVELFG 126 (166)
T ss_pred CceEEEEECCCHHHHHHHHHHHHHcC------C---c--cccCCcc-----cCCC------CceEEEEECCCCCEEEEEE
Confidence 34567777777777777777765554 3 3 2222210 1111 1235789999999987655
Q ss_pred e
Q psy17183 102 S 102 (145)
Q Consensus 102 ~ 102 (145)
.
T Consensus 127 ~ 127 (166)
T cd09014 127 G 127 (166)
T ss_pred c
Confidence 4
No 242
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=28.12 E-value=1.4e+02 Score=27.63 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=30.5
Q ss_pred hhhcCCcEEEEEeCCCHHHHHHH---HHHHhhcCCCCCCCCCCCCccEEecCc
Q psy17183 17 ILIVSPFQIIAVSVDSHLAHLAW---TKTLTATSSNRSAIDPSKIVPLLSDST 66 (145)
Q Consensus 17 ~f~~~gv~vi~VS~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~fpllsD~~ 66 (145)
++.+.|.++|=|++.+....++. .+.+++.+ . +.||++|.+
T Consensus 118 ~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g------~---~iPLVADIH 161 (733)
T PLN02925 118 RIADKGADIVRITVQGKKEADACFEIKNTLVQKG------Y---NIPLVADIH 161 (733)
T ss_pred HHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcC------C---CCCEEEecC
Confidence 67899999999999887766654 33333344 7 899999963
No 243
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=28.01 E-value=2.7e+02 Score=21.20 Aligned_cols=27 Identities=7% Similarity=-0.080 Sum_probs=19.4
Q ss_pred hhhhcCCcEEEEEeCCCHHHHHHHHHH
Q psy17183 16 EILIVSPFQIIAVSVDSHLAHLAWTKT 42 (145)
Q Consensus 16 ~~f~~~gv~vi~VS~D~~~~~~~~~~~ 42 (145)
.+++++|+.++-+|-.+........+.
T Consensus 26 ~~l~~~G~~~~iaTGR~~~~~~~~~~~ 52 (256)
T TIGR00099 26 AKLREKGIKVVLATGRPYKEVKNILKE 52 (256)
T ss_pred HHHHHCCCeEEEEeCCCHHHHHHHHHH
Confidence 367788988888887777666665554
No 244
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=27.98 E-value=1.3e+02 Score=21.01 Aligned_cols=47 Identities=9% Similarity=0.125 Sum_probs=29.0
Q ss_pred chHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCC-CCCHHHHHHHHHh
Q psy17183 66 THAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQV-GRNLKEILRQVEA 119 (145)
Q Consensus 66 ~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~-~~~~~ell~~i~~ 119 (145)
+.++++.||+... | .|+.++. ++|.-.....+ .. +|+.+.|++.|.+
T Consensus 67 ~~~L~~~y~I~~~--g--yPTl~lF-~~g~~~~~~~Y--~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 67 NMELGERYKLDKE--S--YPVIYLF-HGGDFENPVPY--SGADVTVDALQRFLKG 114 (116)
T ss_pred hHHHHHHhCCCcC--C--CCEEEEE-eCCCcCCCccC--CCCcccHHHHHHHHHh
Confidence 4678999999732 2 6998888 45531100111 23 3888999888765
No 245
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=27.90 E-value=1e+02 Score=26.72 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhhhhhcCCcEEEEEeCC--CHHHHHHHHHHH-hhcCCCCCCCCCCCCccEEecC
Q psy17183 5 IACDVLKLVRKEILIVSPFQIIAVSVD--SHLAHLAWTKTL-TATSSNRSAIDPSKIVPLLSDS 65 (145)
Q Consensus 5 e~~~~~~~~~~~~f~~~gv~vi~VS~D--~~~~~~~~~~~~-~~~~~~~~~~~~~~~fpllsD~ 65 (145)
|.|-..-.. +.|++.|+.++|=|.. ..+..+.|++.+ .+++ +|+-.|-...|.
T Consensus 72 E~pL~~Gvv--D~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~------IPta~y~~f~~~ 127 (428)
T COG0151 72 EAPLVAGVV--DALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYG------IPTAEYEVFTDP 127 (428)
T ss_pred cHHHhhhhH--HHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcC------CCcccccccCCH
Confidence 344444455 6788999998887754 244455665443 3365 766567776654
No 246
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=27.76 E-value=2e+02 Score=19.98 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=31.5
Q ss_pred hhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCc
Q psy17183 18 LIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST 66 (145)
Q Consensus 18 f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~ 66 (145)
....|...+.+..++.+...+..+++++.+ + ++-++.|..
T Consensus 42 W~~~G~~Kvvlkv~~~~el~~l~~~a~~~~------l---~~~~v~DAG 81 (113)
T PRK04322 42 WLNEGQKKVVLKVNSEEELLELKEKAERLG------L---PTALIRDAG 81 (113)
T ss_pred HHHCCCcEEEEeCCCHHHHHHHHHHHHHcC------C---CEEEEEeCC
Confidence 446789999999988888888777766665 8 888988864
No 247
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=27.43 E-value=1.8e+02 Score=18.98 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=12.7
Q ss_pred ceEEEEECCCCcEEEE
Q psy17183 84 LRAYYIIDKRGYLRSM 99 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~ 99 (145)
.++.|+-||+|.+...
T Consensus 106 ~~~~~~~DPdG~~ie~ 121 (123)
T cd07262 106 YYAAYVRDPDGNKIEA 121 (123)
T ss_pred eEEEEEECCCCCEEEE
Confidence 3578999999988754
No 248
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=27.38 E-value=2.3e+02 Score=20.00 Aligned_cols=60 Identities=17% Similarity=0.023 Sum_probs=33.2
Q ss_pred CCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEE
Q psy17183 21 SPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMN 100 (145)
Q Consensus 21 ~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~ 100 (145)
.|+.=|+..+++.+...++.+.+++.+ ++++..+. -. ..| .....|+-||+|.+...+
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~G-----------v~v~~~~g--------~~--~~g-~~~~~y~~DPdG~~iEl~ 123 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKG-----------YEHVWGVG--------RH--ILG-SQIFDYWFDPWGFIVEHY 123 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCC-----------CcEeecCC--------cc--CCC-CCEEEEEECCCCCEEEEE
Confidence 345556666776666655545544432 34433211 00 012 234679999999998776
Q ss_pred ee
Q psy17183 101 VS 102 (145)
Q Consensus 101 ~~ 102 (145)
..
T Consensus 124 ~~ 125 (153)
T cd07257 124 TD 125 (153)
T ss_pred cC
Confidence 54
No 249
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=27.21 E-value=1.1e+02 Score=19.78 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=25.2
Q ss_pred HHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHH
Q psy17183 7 CDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKT 42 (145)
Q Consensus 7 ~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~ 42 (145)
+.+.+.+ +.++++|+.++.+|.........+.+.
T Consensus 27 ~~~~~~l--~~l~~~g~~i~ivS~~~~~~~~~~~~~ 60 (139)
T cd01427 27 PGVKEAL--KELKEKGIKLALATNKSRREVLELLEE 60 (139)
T ss_pred cCHHHHH--HHHHHCCCeEEEEeCchHHHHHHHHHH
Confidence 4455556 467788999999998877777777765
No 250
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=27.05 E-value=4.1e+02 Score=23.67 Aligned_cols=90 Identities=10% Similarity=0.008 Sum_probs=51.0
Q ss_pred cEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC-chHHHHHhCCCccCCCCcceEEEEEC----CCCcEE
Q psy17183 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THAISKTYGCYLSSAGHSLRAYYIID----KRGYLR 97 (145)
Q Consensus 23 v~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~-~~~va~~yg~~~~~~g~~~p~tfIID----~dG~I~ 97 (145)
+-|+.++........+.++.+++. .+.+..|. ...+.+++.--. ..| .|..+||+ .+|.|.
T Consensus 542 v~Ii~~~~~~~~~a~~i~~~Lr~~-----------gi~v~~d~~~~~l~kki~~A~-~~g--~~~~iiiG~~E~~~~~v~ 607 (638)
T PRK00413 542 VVVLPITDKHADYAKEVAKKLKAA-----------GIRVEVDLRNEKIGYKIREAQ-LQK--VPYMLVVGDKEVEAGTVS 607 (638)
T ss_pred EEEEEeChhHHHHHHHHHHHHHhC-----------CCEEEEECCCCCHhHHHHHhh-ccC--CCEEEEEcchhhhcCeEE
Confidence 344444433333445556665543 45666654 445666654321 124 58999999 567777
Q ss_pred EEEeecCC-CCCCHHHHHHHHHhccccccC
Q psy17183 98 SMNVSDIQ-VGRNLKEILRQVEAFQLVDST 126 (145)
Q Consensus 98 ~~~~~~~~-~~~~~~ell~~i~~l~~~~~~ 126 (145)
........ ..-+.+++++.|+++...+++
T Consensus 608 vr~~~~~~q~~i~~~~l~~~i~~~~~~~~~ 637 (638)
T PRK00413 608 VRRRGGKDLGTMSLDEFIERLLEEIASRSL 637 (638)
T ss_pred EEECCCCccceeeHHHHHHHHHHHHhhccC
Confidence 66654321 123578888888877765544
No 251
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=27.00 E-value=2.1e+02 Score=19.54 Aligned_cols=33 Identities=21% Similarity=0.106 Sum_probs=23.4
Q ss_pred HHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHH
Q psy17183 8 DVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKT 42 (145)
Q Consensus 8 ~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~ 42 (145)
...+++ ..++++|+.++.+|..+........+.
T Consensus 81 ~~~~~L--~~l~~~~~~~~i~Sn~~~~~~~~~l~~ 113 (176)
T PF13419_consen 81 GVRELL--ERLKAKGIPLVIVSNGSRERIERVLER 113 (176)
T ss_dssp THHHHH--HHHHHTTSEEEEEESSEHHHHHHHHHH
T ss_pred hhhhhh--hhcccccceeEEeecCCcccccccccc
Confidence 344555 367788999999998877666655554
No 252
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=26.74 E-value=98 Score=24.09 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=29.0
Q ss_pred eEEEEECCCCcEEEEEeecCC-CCCCHHHHHHHHHh
Q psy17183 85 RAYYIIDKRGYLRSMNVSDIQ-VGRNLKEILRQVEA 119 (145)
Q Consensus 85 p~tfIID~dG~I~~~~~~~~~-~~~~~~ell~~i~~ 119 (145)
...+.||++|+|..=.+|... .|...+|+.+.|+.
T Consensus 21 ~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~ 56 (239)
T TIGR03028 21 TTDTRVSESGSITFPLIGEVKLGGETPAAAERKIAS 56 (239)
T ss_pred ceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHH
Confidence 356899999999999999876 47889999877764
No 253
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=26.72 E-value=1.3e+02 Score=26.17 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=34.9
Q ss_pred ccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 59 VPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 59 fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
.+.+.|.+|.+++.|+... ...+||-||+.|.+.... ...+.+++.|..
T Consensus 482 ~~~~~d~~g~~~~~~~~~~-------~~~~lvRPD~~v~~~~~~-----~~~~~~~~~l~~ 530 (538)
T PRK06183 482 DDHDSDVDGALRAWLARHG-------ASAVLLRPDRYVAAAADA-----QTLGALLAALAA 530 (538)
T ss_pred CceeecCCchHHHHHHhCC-------CEEEEECCCEEEEEeeCH-----HHHHHHHHHHHh
Confidence 3456799999999999762 467999999999865321 135666666644
No 254
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=26.18 E-value=85 Score=21.02 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=25.3
Q ss_pred HHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHHHhhcC
Q psy17183 9 VLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATS 47 (145)
Q Consensus 9 ~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~ 47 (145)
-.+.. +.++++|..++-||.++..+..++.+++++.+
T Consensus 19 a~e~l--~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~G 55 (101)
T PF13344_consen 19 AVEAL--DALRERGKPVVFLTNNSSRSREEYAKKLKKLG 55 (101)
T ss_dssp HHHHH--HHHHHTTSEEEEEES-SSS-HHHHHHHHHHTT
T ss_pred HHHHH--HHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcC
Confidence 34555 46788999999999887666677777765543
No 255
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.37 E-value=1.9e+02 Score=24.37 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=41.1
Q ss_pred HHHHhhhhhhhcCCcEEEEEeCCC-----HHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC-chH-HHHHhCCCccCCC
Q psy17183 9 VLKLVRKEILIVSPFQIIAVSVDS-----HLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THA-ISKTYGCYLSSAG 81 (145)
Q Consensus 9 ~~~~~~~~~f~~~gv~vi~VS~D~-----~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~-~~~-va~~yg~~~~~~g 81 (145)
+.++. .+|+..|..|+-...|+ .+..+.|.++ + ..++++-. .+. .+=.|+......
T Consensus 156 IaKLA--~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er-----------~---gv~vI~~~~G~DpAaVafDAi~~Ak- 218 (340)
T COG0552 156 IAKLA--KYLKQQGKSVLLAAGDTFRAAAIEQLEVWGER-----------L---GVPVISGKEGADPAAVAFDAIQAAK- 218 (340)
T ss_pred HHHHH--HHHHHCCCeEEEEecchHHHHHHHHHHHHHHH-----------h---CCeEEccCCCCCcHHHHHHHHHHHH-
Confidence 34555 46789999999999987 4456678776 3 45655521 111 112233322100
Q ss_pred CcceEEEEECCCCcEE
Q psy17183 82 HSLRAYYIIDKRGYLR 97 (145)
Q Consensus 82 ~~~p~tfIID~dG~I~ 97 (145)
...--.+|||-.||..
T Consensus 219 ar~~DvvliDTAGRLh 234 (340)
T COG0552 219 ARGIDVVLIDTAGRLH 234 (340)
T ss_pred HcCCCEEEEeCccccc
Confidence 0112468999999874
No 256
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=25.11 E-value=3.4e+02 Score=24.36 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=36.3
Q ss_pred CccEEecCchHHHHHhCCCccCCCCcceEEEEEC----CCCcEEEEEeecCC-CCCCHHHHHHHHHh
Q psy17183 58 IVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIID----KRGYLRSMNVSDIQ-VGRNLKEILRQVEA 119 (145)
Q Consensus 58 ~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID----~dG~I~~~~~~~~~-~~~~~~ell~~i~~ 119 (145)
.+.+..|..+++.++|.-.. ..| .|..++|| .+|.|......... ..-..+++.+.|..
T Consensus 486 GI~VeiD~s~sIGKq~rrAD-eiG--iPf~IIIG~~EledgtVTIRdRdT~eQ~~I~ldeL~~~L~e 549 (551)
T TIGR00389 486 GIRIKYDDSGTIGKRYRRAD-EIG--TPFCVTIDFETLEDETVTIRERDSMKQVRVKIKELPSYIKK 549 (551)
T ss_pred CCEEEEECCCCHHHHHHHHH-HcC--CCEEEEECCchhhCCEEEEEECCCCceEEeeHHHHHHHHHh
Confidence 46666776667888885432 234 58999999 46777766553321 12246677666654
No 257
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=25.08 E-value=30 Score=27.88 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=7.7
Q ss_pred eEEEEECCCCcEE
Q psy17183 85 RAYYIIDKRGYLR 97 (145)
Q Consensus 85 p~tfIID~dG~I~ 97 (145)
-.|++|.++|.++
T Consensus 276 ~~T~~v~~~g~~~ 288 (291)
T cd01088 276 EHTIIVREDGKEV 288 (291)
T ss_pred EEEEEECCCCcEe
Confidence 3456666666654
No 258
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=25.07 E-value=22 Score=22.69 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=20.8
Q ss_pred CHHHHHHHHHhccccc------cC--CcccCCCCCC
Q psy17183 109 NLKEILRQVEAFQLVD------ST--DTQCPVNWTT 136 (145)
Q Consensus 109 ~~~ell~~i~~l~~~~------~~--~~~~p~~w~~ 136 (145)
+.+++...++.||.-. -| .++-|++|++
T Consensus 7 ~l~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wte 42 (71)
T COG5420 7 SLEEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTE 42 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHH
Confidence 5788888888888632 23 3789999985
No 259
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=24.55 E-value=3.1e+02 Score=24.53 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=28.6
Q ss_pred CccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeec
Q psy17183 58 IVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 58 ~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~ 103 (145)
|+|++.|.+.+.++.+..- -..-++|++|.++....-+
T Consensus 78 piPi~L~v~~~~~~~l~~g--------~~v~L~~~~g~~~a~l~v~ 115 (568)
T PRK05537 78 PIPITLDVSEKFAAGLEIG--------ERIALRDQEGVLLAILTVS 115 (568)
T ss_pred ceeEEEeCCHHHHhhCCCC--------CEEEEECCCCcEEEEEEee
Confidence 8999999998888877532 3556678899988776443
No 260
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=24.50 E-value=94 Score=20.51 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=14.0
Q ss_pred ceEEEEECCCCcEEEEE
Q psy17183 84 LRAYYIIDKRGYLRSMN 100 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~ 100 (145)
.|..|+.||||.+....
T Consensus 101 ~r~~~~~DPdGn~iei~ 117 (120)
T cd09011 101 QRVVRFYDPDKHIIEVG 117 (120)
T ss_pred cEEEEEECCCCCEEEEe
Confidence 48899999999987553
No 261
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=24.26 E-value=2.1e+02 Score=18.63 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=16.0
Q ss_pred ceEEEEECCCCcEEEEEeec
Q psy17183 84 LRAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~~~~ 103 (145)
.+..|+-||+|.......+.
T Consensus 92 ~~~~~~~DPdG~~iEl~~~~ 111 (113)
T cd07267 92 GKRVTLTDPDGFPVELVYGQ 111 (113)
T ss_pred ceEEEEECCCCCEEEEEecc
Confidence 35789999999998776653
No 262
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=24.20 E-value=1.9e+02 Score=22.76 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=27.4
Q ss_pred HHHHHhhhhhhh-cCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEe
Q psy17183 8 DVLKLVRKEILI-VSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLS 63 (145)
Q Consensus 8 ~~~~~~~~~~f~-~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fplls 63 (145)
.+.+.. +.|. ..|+.+++|.+++.. ..|.+.+++. . ++|++.
T Consensus 48 ~~~~~~--~~L~~~~g~d~ivIaCNTA~--a~~~~~l~~~-------~---~iPii~ 90 (251)
T TIGR00067 48 YVLELL--TFLKERHNIKLLVVACNTAS--ALALEDLQRN-------F---DFPVVG 90 (251)
T ss_pred HHHHHH--HHHHHhCCCCEEEEeCchHH--HHHHHHHHHH-------C---CCCEEe
Confidence 344555 5787 899999999999863 2334444333 5 677765
No 263
>KOG2741|consensus
Probab=24.13 E-value=2.1e+02 Score=24.20 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHH
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKT 42 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~ 42 (145)
|......|...+ ....+.+.+|+||+.-+.+..++|+++
T Consensus 14 ~g~ia~~f~~al--~~~p~s~~~Ivava~~s~~~A~~fAq~ 52 (351)
T KOG2741|consen 14 AGRIARDFVRAL--HTLPESNHQIVAVADPSLERAKEFAQR 52 (351)
T ss_pred hhHHHHHHHHHh--ccCcccCcEEEEEecccHHHHHHHHHh
Confidence 556677777766 356678999999988788889999996
No 264
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=23.92 E-value=1.4e+02 Score=23.20 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=29.0
Q ss_pred cCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHhcc
Q psy17183 64 DSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121 (145)
Q Consensus 64 D~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~l~ 121 (145)
+.+.++++.+|+. | .|+.+ + ++|++. .|. .+.+++.+.|++.|
T Consensus 189 ~~~~~la~~lgi~----g--TPtiv-~-~~G~~~---~G~----~~~~~L~~~l~~~~ 231 (232)
T PRK10877 189 ADHYALGVQFGVQ----G--TPAIV-L-SNGTLV---PGY----QGPKEMKAFLDEHQ 231 (232)
T ss_pred HHhHHHHHHcCCc----c--ccEEE-E-cCCeEe---eCC----CCHHHHHHHHHHcc
Confidence 4577888888887 3 58766 4 577664 443 34678888887665
No 265
>PRK06724 hypothetical protein; Provisional
Probab=23.84 E-value=2.5e+02 Score=19.32 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=14.8
Q ss_pred ceEEEEECCCCcEEEEEee
Q psy17183 84 LRAYYIIDKRGYLRSMNVS 102 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~~~ 102 (145)
.++.|+-||||........
T Consensus 105 ~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 105 YYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred EEEEEEECCCCCEEEEEeC
Confidence 4688899999998866544
No 266
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=23.55 E-value=2.2e+02 Score=18.55 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=13.4
Q ss_pred ceEEEEECCCCcEEEEE
Q psy17183 84 LRAYYIIDKRGYLRSMN 100 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~ 100 (145)
.+..++.||+|.+...+
T Consensus 105 ~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 105 QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CEEEEEECCCCCEEEEe
Confidence 36789999999987553
No 267
>KOG2583|consensus
Probab=23.51 E-value=2.6e+02 Score=24.26 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHH
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKT 42 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~ 42 (145)
|+.|+.+|.+.+ |-.-+..++|+++|. ...+.|+++
T Consensus 185 ss~eL~~Fa~k~----fv~gn~~lvg~nvd~-~~L~~~~~~ 220 (429)
T KOG2583|consen 185 SSSELKDFAAKH----FVKGNAVLVGVNVDH-DDLKQFADE 220 (429)
T ss_pred cHHHHHHHHHHH----hhccceEEEecCCCh-HHHHHHHHH
Confidence 677888887754 777888999999874 467788776
No 268
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=23.46 E-value=2.2e+02 Score=19.74 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=17.7
Q ss_pred cceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHHh
Q psy17183 83 SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119 (145)
Q Consensus 83 ~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~~ 119 (145)
..|+.|| +|+.. .+. .+.+++.+.|++
T Consensus 136 ~tPt~~i---nG~~~---~~~----~~~~~l~~~Id~ 162 (162)
T PF13462_consen 136 GTPTFFI---NGKYV---VGP----YTIEELKELIDK 162 (162)
T ss_dssp SSSEEEE---TTCEE---ETT----TSHHHHHHHHHH
T ss_pred cccEEEE---CCEEe---CCC----CCHHHHHHHHcC
Confidence 4688877 78773 222 357888877763
No 269
>PLN02367 lactoylglutathione lyase
Probab=22.87 E-value=3.9e+02 Score=21.16 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=33.3
Q ss_pred CCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEE
Q psy17183 21 SPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMN 100 (145)
Q Consensus 21 ~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~ 100 (145)
.|+.-|++++++.+...+..+. .+ ++++..+.. |. ..+..||-||||..+...
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a---~G-----------v~~v~~P~~------g~-------~~riaFIkDPDGn~IEL~ 220 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE---LG-----------VEFVKKPND------GK-------MKGIAFIKDPDGYWIEIF 220 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH---CC-----------CEEEeCCcc------CC-------ceEEEEEECCCCCEEEEE
Confidence 4788899999886665444443 43 444433321 11 136789999999988654
No 270
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=22.78 E-value=2.3e+02 Score=18.56 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=31.9
Q ss_pred CcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEE
Q psy17183 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSM 99 (145)
Q Consensus 22 gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~ 99 (145)
|+.-+++.+++.+...++.+++++.+ +++...+.... .+ +...+..|+.||+|.....
T Consensus 68 g~~hia~~v~~~~d~~~~~~~l~~~g-----------~~~~~~~~~~~---~~------~~~~~~~~~~DpdG~~ie~ 125 (128)
T cd07242 68 GLHHLAFRAPSREAVDELYARLAKRG-----------AEILYAPREPY---AG------GPGYYALFFEDPDGIRLEL 125 (128)
T ss_pred CeeEEEEEcCCHHHHHHHHHHHHHcC-----------CeEecCCcccc---cC------CCcEEEEEEECCCCcEEEE
Confidence 44556776666556666666654432 34443332100 00 0124688999999987654
No 271
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=22.48 E-value=94 Score=26.12 Aligned_cols=34 Identities=9% Similarity=0.224 Sum_probs=27.6
Q ss_pred EEEECCCCcEEEEEeecCCC-CCCHHHHHHHHHhc
Q psy17183 87 YYIIDKRGYLRSMNVSDIQV-GRNLKEILRQVEAF 120 (145)
Q Consensus 87 tfIID~dG~I~~~~~~~~~~-~~~~~ell~~i~~l 120 (145)
.+.||+||+|-+=++|.... |...+++.+.|.+.
T Consensus 104 ~~~V~~dG~I~~P~vG~V~vaG~T~~q~~~~I~~~ 138 (355)
T PRK15175 104 NILVTDSNTVQVPYAGTIPVSGLDVTQLADEIKKR 138 (355)
T ss_pred CeEECCCCeEEecccceEEECCCCHHHHHHHHHHH
Confidence 38999999999999998754 78888888777543
No 272
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=22.15 E-value=2.8e+02 Score=19.29 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=29.9
Q ss_pred hhhcCCcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecC
Q psy17183 17 ILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS 65 (145)
Q Consensus 17 ~f~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~ 65 (145)
.....|...+.+..++.+...+..+++++.+ + ++.++.|.
T Consensus 43 ~W~~~g~~KvVl~v~~~~~l~~l~~~a~~~g------l---~~~~v~DA 82 (115)
T cd02407 43 AWELEGQKKVVLKVPSEEELLELAKKAKELG------L---PHSLIQDA 82 (115)
T ss_pred HHHhCCCcEEEEECCCHHHHHHHHHHHHHcC------C---CeEEEEEC
Confidence 3456788888998888777777777665555 7 78888876
No 273
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=22.15 E-value=2.8e+02 Score=19.28 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=14.5
Q ss_pred ceEEEEECCCCcEEEEEe
Q psy17183 84 LRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 84 ~p~tfIID~dG~I~~~~~ 101 (145)
.++.|+.||+|.....+.
T Consensus 107 ~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 107 GQTIYFFDPSGNRNETFA 124 (143)
T ss_pred ceEEEEECCCCCEEEEec
Confidence 467899999999887654
No 274
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=21.97 E-value=3.9e+02 Score=20.81 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=28.8
Q ss_pred CccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeec
Q psy17183 58 IVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSD 103 (145)
Q Consensus 58 ~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~ 103 (145)
.=++..|..|.++++||+.. .|+.+---++|+...+.-.+
T Consensus 164 ~~~vYfdQ~G~Lt~rF~I~~------VPAvV~~~q~G~~l~I~E~~ 203 (209)
T PRK13738 164 DSRIYFDQNGVLCQRFGIDQ------VPARVSAVPGGRFLKVEFIP 203 (209)
T ss_pred CCceEEcCcchHHHhcCCee------eceEEEEcCCCCEEEEEEEC
Confidence 56788999999999999873 57755422788876554433
No 275
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=21.83 E-value=3.3e+02 Score=19.97 Aligned_cols=48 Identities=10% Similarity=0.162 Sum_probs=31.2
Q ss_pred EEecCc------hHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEeecCCCCCCHHHHHHHHH
Q psy17183 61 LLSDST------HAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118 (145)
Q Consensus 61 llsD~~------~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~~~~~~~~~~~ell~~i~ 118 (145)
+.+|.. +..-+.||+... ..+.+||-|||.|-++... .+.+++.+.++
T Consensus 112 v~~d~~~~~~~~~~~~~~~gv~~~-----~g~vvvvRPDgyVg~~~~~-----~~~~~l~~yf~ 165 (167)
T cd02979 112 IYADDDSYHEGHGDAYEKYGIDPE-----RGAVVVVRPDQYVALVGPL-----DDVEALEAYFA 165 (167)
T ss_pred EEecCccccCCcccHHHhhCCCCC-----CCCEEEECCCCeEEEEecc-----ccHHHHHHHHh
Confidence 566654 668888887632 4578999999988765332 23455555544
No 276
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=21.68 E-value=4.1e+02 Score=22.74 Aligned_cols=7 Identities=29% Similarity=0.705 Sum_probs=4.0
Q ss_pred ECCCCcE
Q psy17183 90 IDKRGYL 96 (145)
Q Consensus 90 ID~dG~I 96 (145)
||.+|++
T Consensus 264 vd~~G~~ 270 (465)
T PRK14317 264 VDGQGRV 270 (465)
T ss_pred ECCCCCE
Confidence 4666644
No 277
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=21.49 E-value=3e+02 Score=19.27 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=34.6
Q ss_pred CcEEEEEeCCCHHHHHHHHHHHhhcCCCCCCCCCCCCccEEecCchHHHHHhCCCccCCCCcceEEEEECCCCcEEEEEe
Q psy17183 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNV 101 (145)
Q Consensus 22 gv~vi~VS~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fpllsD~~~~va~~yg~~~~~~g~~~p~tfIID~dG~I~~~~~ 101 (145)
++.=+++.+++.+.+.++.+.+++.+ +++...+.. .+.. .....|+-||+|..+....
T Consensus 56 gl~Hiaf~v~~~~~v~~~~~~l~~~G-----------~~~~~~p~~-----~~~~------~~~~~y~~DPdG~~iE~~~ 113 (141)
T cd07258 56 HFHHVNFMVTDIDDIGKALYRIKAHD-----------VKVVFGPGR-----HPPS------DSIFFYFLDPDGITVEYSF 113 (141)
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHCC-----------CcEEeCCce-----ECCC------CCEEEEEECCCCCEEEEEe
Confidence 45666777777666666666654432 344433310 1101 2367799999999887655
Q ss_pred e
Q psy17183 102 S 102 (145)
Q Consensus 102 ~ 102 (145)
+
T Consensus 114 ~ 114 (141)
T cd07258 114 G 114 (141)
T ss_pred C
Confidence 4
No 278
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=21.29 E-value=2.4e+02 Score=18.10 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.1
Q ss_pred eEEEEECCCCcEEEEE
Q psy17183 85 RAYYIIDKRGYLRSMN 100 (145)
Q Consensus 85 p~tfIID~dG~I~~~~ 100 (145)
+..||.||+|......
T Consensus 94 ~~~~~~DP~Gn~i~~~ 109 (112)
T cd07238 94 RRFFVRDPFGKLVNIL 109 (112)
T ss_pred EEEEEECCCCCEEEEE
Confidence 6789999999887653
No 279
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=21.24 E-value=88 Score=19.21 Aligned_cols=27 Identities=26% Similarity=0.105 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHhhhhhhhcCCcEEEEEeCC
Q psy17183 2 DTKIACDVLKLVRKEILIVSPFQIIAVSVD 31 (145)
Q Consensus 2 ~t~e~~~~~~~~~~~~f~~~gv~vi~VS~D 31 (145)
|...++.+.+.. +++.. .+.++++...
T Consensus 47 C~~~~~~l~~~~--~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 47 CRAEAPLLEELA--EEYGG-DVEVVAVNVD 73 (127)
T ss_pred HHhhchhHHHHH--HHhcC-CcEEEEEECC
Confidence 666667777766 34443 5667777664
No 280
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=21.12 E-value=2.4e+02 Score=20.90 Aligned_cols=34 Identities=9% Similarity=-0.029 Sum_probs=25.1
Q ss_pred HHHHHHhhhhhhhcCCcEEEEEeCCCHHHHHHHHHH
Q psy17183 7 CDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKT 42 (145)
Q Consensus 7 ~~~~~~~~~~~f~~~gv~vi~VS~D~~~~~~~~~~~ 42 (145)
+...+.. .+++++|+.++-+|.-+....+.+.+.
T Consensus 19 ~~~~~~l--~~l~~~gi~~~i~TgR~~~~~~~~~~~ 52 (221)
T TIGR02463 19 QPAAPWL--TRLQEAGIPVILCTSKTAAEVEYLQKA 52 (221)
T ss_pred HHHHHHH--HHHHHCCCeEEEEcCCCHHHHHHHHHH
Confidence 3344555 467888999999988888888777775
No 281
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=21.07 E-value=38 Score=27.41 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=8.4
Q ss_pred eEEEEECCCCcEE
Q psy17183 85 RAYYIIDKRGYLR 97 (145)
Q Consensus 85 p~tfIID~dG~I~ 97 (145)
-.|++|.++|.++
T Consensus 280 ~~Tv~v~~~g~~~ 292 (295)
T TIGR00501 280 EHTILVEEHGKEV 292 (295)
T ss_pred EEEEEECCCccEE
Confidence 4567777777654
No 282
>TIGR01492 CPW_WPC Plasmodium falciparum CPW-WPC domain. This model represents a domain of about 61 residues in length with six well-conserved cysteine residues and six well-conserved aromatic sites. The domain can be found in tandem repeats, and is known so far only in Plasmodium falciparum. It is named for motifs of CPxxW and (less well conserved) WPC.
Probab=20.84 E-value=44 Score=20.65 Aligned_cols=15 Identities=27% Similarity=0.762 Sum_probs=11.5
Q ss_pred CcccCCCCCCCCCcc
Q psy17183 127 DTQCPVNWTTGQPSV 141 (145)
Q Consensus 127 ~~~~p~~w~~~~~~~ 141 (145)
...||.+|...++.+
T Consensus 7 s~~CP~~W~~~~~~~ 21 (62)
T TIGR01492 7 SSPCPENWIQKNDKY 21 (62)
T ss_pred CccCCccceecCCCC
Confidence 367999999876653
No 283
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=20.20 E-value=1e+02 Score=20.43 Aligned_cols=27 Identities=11% Similarity=-0.008 Sum_probs=19.4
Q ss_pred cCCcEEEEEeCCCHHHHHHHHHHHhhc
Q psy17183 20 VSPFQIIAVSVDSHLAHLAWTKTLTAT 46 (145)
Q Consensus 20 ~~gv~vi~VS~D~~~~~~~~~~~~~~~ 46 (145)
..+-.++||.+.+.+...++.+.+++.
T Consensus 48 ~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 48 DFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp SCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred CeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 346678999998877778888886543
Done!