RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17183
(145 letters)
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 138 bits (350), Expect = 1e-42
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
++I+ S DS +HL WT + + P I P+L+D T AI++ YG +G +
Sbjct: 72 EVISCSCDSEYSHLQWTSV----DRKKGGLGPMAI-PMLADKTKAIARAYGVLDEDSGVA 126
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
R +IID G LR + ++D+ +GRN++E++R VEA Q V+ CP NW G K
Sbjct: 127 YRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHGEVCPANWKKGDAKKK 185
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 138 bits (350), Expect = 2e-42
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
+++A S+DS +HLAWT R + I P+L+D T I K+YG G +
Sbjct: 72 EVLACSMDSEYSHLAWTSI----ERKRGGLGQMNI-PILADKTKCIMKSYGVLKEEDGVA 126
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
R +IID + LR + V+D+ VGR++ E LR V+AFQ V+ CP NW G ++K
Sbjct: 127 YRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWKPGDKTMK 185
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 138 bits (349), Expect = 4e-42
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
Q++ S DS + LAWT + P I PLL+D+ H++S+ YG + G +
Sbjct: 88 QVLFASTDSEYSLLAWTNI----PRKEGGLGPINI-PLLADTNHSLSRDYGVLIEEEGVA 142
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
LR +IID +G +R + ++D+ VGRN+ E LR VEAFQ D T P NWT G ++K
Sbjct: 143 LRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATIK 201
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 138 bits (349), Expect = 4e-42
Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 5/119 (4%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
+++AVSVDSH +HLAW T + I LLSD T IS+ YG L G +
Sbjct: 92 EVVAVSVDSHFSHLAWINT----PRKNGGLGHMNI-ALLSDLTKQISRDYGVLLEGPGLA 146
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
LR +IID G ++ ++V+D+ VGR+++E LR V+AFQ V++ P NWT P++K
Sbjct: 147 LRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAHGEVSPANWTPESPTIK 205
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 137 bits (347), Expect = 5e-42
Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
+++ VSVDS HLAW T + P I PLL+D T +S+ YG + G +
Sbjct: 70 EVLGVSVDSQFTHLAWINT----PRKEGGLGPLNI-PLLADVTRRLSEDYGVLKTDEGIA 124
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
R +IID +G LR + V+D+ VGR++ E LR V+AFQ D CP W G ++K
Sbjct: 125 YRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIK 183
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 138 bits (349), Expect = 5e-42
Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
Q+IA S DS +HLAW + KI PLL+D ISK YG + G++
Sbjct: 105 QVIACSTDSQYSHLAWDNL----DRKSGGLGHMKI-PLLADRKQEISKAYGVFDEEDGNA 159
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
R +IID G LR + ++D VGR++ E LR ++AFQ V+ CPVNW GQ +K
Sbjct: 160 FRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQHGIK 218
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 136 bits (346), Expect = 8e-42
Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 5/119 (4%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
+++A SVDS HLAW T + + P +I PLLSD TH ISK YG YL +GH+
Sbjct: 84 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 138
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
LR +IID +G LR + ++D+ VGR++ E LR V+AFQ D CP W G ++
Sbjct: 139 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETII 197
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 137 bits (346), Expect = 2e-41
Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 5/119 (4%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
+++A SVDS HLAW T + + P KI PLLSD TH ISK YG YL GH+
Sbjct: 113 EVVACSVDSQFTHLAWIIT----PRKQGGLGPMKI-PLLSDLTHQISKDYGVYLEDQGHT 167
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
LR +IID++G LR + ++D+ VGR++ E LR V+AFQ D CP W G ++
Sbjct: 168 LRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSDTII 226
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 136 bits (345), Expect = 3e-41
Identities = 51/119 (42%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
+++A SVDS HLAW T + + P +I PLLSD TH ISK YG YL +GH+
Sbjct: 127 EVVACSVDSQFTHLAWINT----PRRQGGLGPIRI-PLLSDLTHQISKDYGVYLEDSGHT 181
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
LR +IID +G LR + ++D+ VGR++ E LR V+AFQ D P W G ++
Sbjct: 182 LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVAPAGWKPGSETII 240
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 132 bits (335), Expect = 3e-40
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
+I VS+DS H AW T + I P+++D T +IS+ Y +
Sbjct: 69 NVIGVSIDSEQVHFAWKNT----PVEKGGIGQVSF-PMVADITKSISRDYDVLFE-EAIA 122
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
LR ++IDK +R ++D+ +GRN E+LR V+A + CP W G +K
Sbjct: 123 LRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMK 181
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 131 bits (332), Expect = 2e-39
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
+++ +SVDS +HLAW + I + L+SD ISK Y L +
Sbjct: 92 ELLGISVDSVYSHLAWKNM----PIEKGGIGNVEF-TLVSDINKDISKNYNV-LYDNSFA 145
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
LR +IIDK G +R V+D+ +GRN++E+LR +++ VD++ CP+NW GQ + K
Sbjct: 146 LRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIHVDTSGEVCPINWKKGQKAFK 204
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 128 bits (325), Expect = 7e-39
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
+ +VS D+H H AW + I K ++ D T A+++ + G +
Sbjct: 66 DVYSVSTDTHFTHKAWHSS-------SETIAKIKY-AMIGDPTGALTRNFDNMREDEGLA 117
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDS-TDTQCPVNWTTGQPSVK 142
RA +++D +G ++++ V+ +GR+ ++LR+++A Q V + CP W G+ ++
Sbjct: 118 DRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLA 177
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 128 bits (324), Expect = 1e-38
Identities = 41/119 (34%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
+++ SVDS HLAW KT ++ I K L+SD + +I+++Y L + +
Sbjct: 67 ELLGCSVDSKFTHLAWKKT----PLSQGGIGNIKH-TLISDISKSIARSYDV-LFNESVA 120
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
LRA+ +IDK+G ++ + V+++ +GR++ EILR ++A Q + CP NW G+ S+K
Sbjct: 121 LRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKGKESMK 179
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 128 bits (324), Expect = 2e-38
Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
+++ SVDS HLAW KT + I K LLSD T +ISK Y S
Sbjct: 88 ELLGCSVDSKYTHLAWKKT----PLAKGGIGNIKH-TLLSDITKSISKDYNVLFDD-SVS 141
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
LRA+ +ID G ++ + V+++ +GR++ EILR ++A Q + CP NW G+ S+K
Sbjct: 142 LRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQHHEKYGDVCPANWQKGKVSMK 200
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 127 bits (322), Expect = 2e-38
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
++ +VS D+H H AW + A+ + ++ D + IS+ + G +
Sbjct: 67 EVYSVSTDTHFVHKAWHEN-------SPAVGSIEY-IMIGDPSQTISRQFDVLNEETGLA 118
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDS-TDTQCPVNWTTGQPSVK 142
R +IID G ++++ ++ +GR+ ++ +V+A Q V CP W G ++K
Sbjct: 119 DRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVCPAKWEEGGETLK 178
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 116 bits (294), Expect = 3e-34
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
QI+ VS+DS AH W + + P+LSD +S+ G L++ G +
Sbjct: 81 QILGVSIDSEFAHFQWRAQ-------HNDLKTLPF-PMLSDIKRELSQAAGV-LNADGVA 131
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSVK 142
R +I+D ++ ++ + VGRN+ E+LR ++A Q +D C NW G P++
Sbjct: 132 DRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ----SDELCASNWRKGDPTLD 186
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 107 bits (269), Expect = 6e-30
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
++IA+S D+ H W++ + S + + P+++D T ++ G S
Sbjct: 65 KLIALSCDNVADHKEWSEDVKCLSGVKGDMP----YPIIADETRELAVKLGMVDPDERTS 120
Query: 84 ------LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
RA +II L+ + GRN EILR +++ QL P +W G
Sbjct: 121 TGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQLTAQKKVATPADWQPG 180
Query: 138 QPSVKV 143
+ V
Sbjct: 181 DRCMVV 186
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 105 bits (265), Expect = 2e-29
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
++IA+S+DS HLAW+K + A +S P++ D ++ G +
Sbjct: 67 KLIALSIDSVEDHLAWSKDINAYNSEEPTEKLP--FPIIDDRNRELAILLGMLDPAEKDE 124
Query: 84 ------LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
R ++ L+ + GRN EILR V + QL PV+W G
Sbjct: 125 KGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDG 184
Query: 138 QPSVKV 143
+ +
Sbjct: 185 DSVMVL 190
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 105 bits (264), Expect = 2e-29
Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
++I S +S +H W + + ++ +I P++ D + ++
Sbjct: 67 KLIGFSCNSKESHDKWIEDIKYYGK----LNKWEI-PIVCDESRELANKLKIMDEQEKDI 121
Query: 84 ------LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
R + I +++ + GRN EILR +++ QL +T PVNW G
Sbjct: 122 TGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNWNEG 181
Query: 138 QPSVKV 143
+
Sbjct: 182 DKCCVI 187
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 104 bits (262), Expect = 1e-28
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG-H 82
+I +SVDS +H+ W + + R P+++D +++ G + + H
Sbjct: 69 DLIGLSVDSVFSHIKWKEWIERHIGVRIPF------PIIADPQGTVARRLGLLHAESATH 122
Query: 83 SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQP 139
++R +I+D RG +R+M +++GR + EILR V+A +L DS P +W +
Sbjct: 123 TVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNEI 179
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 84.6 bits (210), Expect = 6e-22
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 14/100 (14%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD--STHAISKTYGCYLSSAG 81
+A+SV H W T PLLSD A+S+ YG + AG
Sbjct: 72 AALAISVGPPPTHKIWATQSGFT------------FPLLSDFWPHGAVSQAYGVFNEQAG 119
Query: 82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121
+ R +++D+ G +R + R+ + + A
Sbjct: 120 IANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 159
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 45.3 bits (108), Expect = 6e-07
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 21/105 (20%)
Query: 24 QIIAVSVDSHLAHLAWTKT--LTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
+++A+SVDS + L LLSD + K Y Y
Sbjct: 69 EVLAISVDSPWCLKKFKDENRLA--------------FNLLSDYNREVIKLYNVYHEDLK 114
Query: 82 H----SLRAYYIIDKRGYLRSMNVS-DIQVGRNLKEILRQVEAFQ 121
+ RA +I+ G + V+ + + E++R+
Sbjct: 115 GLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 159
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 43.4 bits (103), Expect = 4e-06
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 13/98 (13%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THAISKTYGCYLSSAGH 82
++ VS+D A W + +LSD H+ + Y ++
Sbjct: 76 VVLTVSMDLPFAQKRWCGAEGLDN-----------AIMLSDYFDHSFGRDYALLINEWHL 124
Query: 83 SLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQVEA 119
RA +++D +R V +I N + + +A
Sbjct: 125 LARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 43.0 bits (102), Expect = 4e-06
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 22/104 (21%)
Query: 24 QIIAVSVDSHLAHLAWTK--TLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
++ +SVD ++ A+ + L +LSD + K Y
Sbjct: 66 VVLGISVDPPFSNKAFKEHNKLN--------------FTILSDYNREVVKKYNVAWEFPA 111
Query: 82 H-----SLRAYYIIDKRGYLRSMNVSD-IQVGRNLKEILRQVEA 119
+ RA ++IDK G +R VSD EI + V++
Sbjct: 112 LPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS 155
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET:
PG4; 1.96A {Staphylococcus aureus}
Length = 166
Score = 41.4 bits (98), Expect = 2e-05
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 13/98 (13%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTH-AISKTYGCYLSSAGH 82
++ +S D A W S+ V LSD + + YG +
Sbjct: 79 IVLTISADLPFAQKRW-----CASAGL------DNVITLSDHRDLSFGENYGVVMEELRL 127
Query: 83 SLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQVEA 119
RA +++D + VS+ + L +
Sbjct: 128 LARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 1e-04
Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 31/142 (21%)
Query: 3 TKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLL 62
T +A DV ++ F+I W L + N P ++ +L
Sbjct: 164 TWVALDVCL--SYKVQCKMDFKIF------------W---LNLKNCNS----PETVLEML 202
Query: 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKE---ILRQVEA 119
+ I + S +++ I + LR + + + +L V+
Sbjct: 203 QKLLYQIDPNW-TSRSDHSSNIK-LRIHSIQAELR-----RLLKSKPYENCLLVLLNVQN 255
Query: 120 FQLVDSTDTQCPVNWTTGQPSV 141
+ ++ + C + TT V
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQV 277
Score = 26.7 bits (58), Expect = 3.5
Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 42/136 (30%)
Query: 2 DTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPL 61
I +L L+ +++ + + L S ++
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVV--------VNKLH----------KYSLVEKQP---- 421
Query: 62 LSDSTHAISKTYGCYLSSAGHSLRAYY----IIDKRGYLRSMNVSDIQ-----------V 106
+ST +I YL Y I+D ++ + D+ +
Sbjct: 422 -KESTISI---PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 107 GRNLKEILRQVEAFQL 122
G +LK I E L
Sbjct: 478 GHHLKNI-EHPERMTL 492
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 38.8 bits (91), Expect = 1e-04
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 14/97 (14%)
Query: 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
F I VS D W K + S V L D + ++Y
Sbjct: 62 GFTIYGVSTDRREE--DWKKAIEEDKS------YWNQVLLQKDDVKDVLESYCIV----- 108
Query: 82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118
++D G + + + + +++ + +
Sbjct: 109 -GFPHIILVDPEGKIVAKELRGDDLYNTVEKFVNGAK 144
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex
aeolicus}
Length = 171
Score = 38.0 bits (89), Expect = 3e-04
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS---A 80
+ VS+D A + ++ + V + SD + + YG +
Sbjct: 81 DVTVVSMDLPFAQKRFCESFNIQN-----------VTVASDFRYRDMEKYGVLIGEGALK 129
Query: 81 GHSLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQVEA 119
G RA +IIDK G + V +I N E++ +V+
Sbjct: 130 GILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKE 169
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 37.7 bits (88), Expect = 3e-04
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 19/95 (20%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGH 82
+++S D + AW +T D K + L + Y +
Sbjct: 64 IHFVSLSCDKNKK--AWENMVTK--------DQLKGIQLHMGTDRTFMDAYLI------N 107
Query: 83 SLRAYYIIDKRGYLRSMNV---SDIQVGRNLKEIL 114
+ + ++D+ G + S N+ SD + E+L
Sbjct: 108 GIPRFILLDRDGKIISANMTRPSDPKTAEKFNELL 142
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 37.2 bits (87), Expect = 5e-04
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THAISKTYGCYLSSAGH 82
+ +S D A W + ID V LSD + + +G Y+
Sbjct: 78 NVYTISADLPFAQARWCGA--------NGIDK---VETLSDHRDMSFGEAFGVYIKELRL 126
Query: 83 SLRAYYIIDKRGYLR 97
R+ +++D+ G +
Sbjct: 127 LARSVFVLDENGKVV 141
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 35.4 bits (82), Expect = 0.002
Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 2 DTKIACDV-LKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVP 60
DT + C ++ ++ +S ++ +S D A + +
Sbjct: 55 DTGV-CATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIEN-----------AK 102
Query: 61 LLSD-STHAISKTYGCYLSS---AGHSLRAYYIIDKRG 94
+S HA+ G + + AG + RA ++D++
Sbjct: 103 TVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQN 140
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 33.9 bits (78), Expect = 0.007
Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 22/98 (22%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIV-PLLSDST---HAISKTYGCYLS 78
++ +S+D W AI + + D ++K Y
Sbjct: 70 IGMLGISLDVDKQ--QWKD----------AIKRDTLDWEQVCDFGGLNSEVAKQYSI--- 114
Query: 79 SAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQ 116
+ + A ++ G + + N+ ++ + ++ I+ +
Sbjct: 115 ---YKIPANILLSSDGKILAKNLRGEELKKKIENIVEE 149
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 33.9 bits (78), Expect = 0.008
Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 20/101 (19%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAID--PSKIVPLLSDSTHAISKTYGCYLSSA 80
F+I +S+D W + D P V + + + Y
Sbjct: 69 FEIYQISLDGDEH--FWKT----------SADNLPWVCVRDANGAYSSYISLYNV----- 111
Query: 81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQ 121
+L + +++++ L + + + +K++L
Sbjct: 112 -TNLPSVFLVNRNNELSARGENIKDLDEAIKKLLEGHHHHH 151
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 33.9 bits (78), Expect = 0.008
Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 18/99 (18%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHA--ISKTYGCYLSSA 80
Q+ A +++ W K + + + DS + TY Y
Sbjct: 65 IQVYAANIERKDE--EWLKFIRS--------KKIGGWLNVRDSKNHTDFKITYDIY---- 110
Query: 81 GHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119
+ Y++DK + + + + L + + ++
Sbjct: 111 --ATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSLKT 147
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI,
protein structur initiative, TB structural genomics
consortium, TBSGC; 1.75A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 1y25_A
Length = 175
Score = 33.8 bits (78), Expect = 0.008
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 15/102 (14%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSS---A 80
++ VS D A + + V S + + YG ++ A
Sbjct: 77 TVLCVSKDLPFAQKRFCGAEGTEN-----------VMPASAFRDSFGEDYGVTIADGPMA 125
Query: 81 GHSLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQVEAFQ 121
G RA +I G + + V +I N + L + A
Sbjct: 126 GLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGATS 167
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 33.1 bits (76), Expect = 0.014
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGH 82
+ ++S+D + +T+T+ +D S + K Y
Sbjct: 66 IAMCSISMDEKES--IFTETVK-----IDKLDLSTQFHEGLGKESELYKKYDL------R 112
Query: 83 SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEI 113
++I+ G + + NV+ ++ LK I
Sbjct: 113 KGFKNFLINDEGVIIAANVTPEKLTEILKAI 143
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 32.7 bits (75), Expect = 0.016
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 22/98 (22%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIV-PLLSDST---HAISKTYGCYLS 78
F ++ +S+D AW AI + + D T +K Y
Sbjct: 68 FAMLGISLDIDRE--AWET----------AIKKDTLSWDQVCDFTGLSSETAKQYAI--- 112
Query: 79 SAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQ 116
+L ++ G + + ++ + LKE+L+
Sbjct: 113 ---LTLPTNILLSPTGKILARDIQGEALTGKLKELLKT 147
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 32.9 bits (75), Expect = 0.018
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 14 RKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDS-THAISKT 72
R+ + ++I ++VDS + + + LLS K
Sbjct: 74 RRFLDSWPHLKLIVITVDSPSSLARARHEHGLPN-----------IALLSTLRGRDFHKR 122
Query: 73 YGCYLSS---AGHSLRAYYIIDKRG 94
YG ++ +G++ A + D
Sbjct: 123 YGVLITEYPLSGYTSPAIILADAAN 147
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET: CIT;
2.15A {Sulfolobus solfataricus}
Length = 161
Score = 32.6 bits (75), Expect = 0.023
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 60 PLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119
L+SD I + YG R ++IDK+G +R + S + ++ E L+ ++
Sbjct: 89 ILVSDPDKKIRELYGAK-GFIL-PARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQ 146
Query: 120 FQ 121
+
Sbjct: 147 IK 148
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 32.2 bits (74), Expect = 0.030
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 19/80 (23%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIV-PLLSDSTHAISKTYGCYLSSAG 81
FQ++AV++D+ + + D + YG
Sbjct: 62 FQVVAVNLDAKTG--DA----------MKFLAQVPAEFTVAFDPKGQTPRLYGVK----- 104
Query: 82 HSLRAYYIIDKRGYLRSMNV 101
+ ++ID+ G + +V
Sbjct: 105 -GMPTSFLIDRNGKVLLQHV 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.032
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 20/80 (25%)
Query: 60 PLLSDSTHAISKTYGCY-LSSAGHSLRA--YYIIDKRGYLRSMNVSDIQVGRNLKEILRQ 116
LL ++ I+K +S ++ Y D G SD++V I +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD--G-------SDLRVLSG--SISER 478
Query: 117 VEAFQLVDSTDTQCPVNWTT 136
+VD + PV W T
Sbjct: 479 -----IVDCI-IRLPVKWET 492
Score = 30.8 bits (69), Expect = 0.16
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 47/136 (34%)
Query: 8 DVLKLVRKE-ILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRS--AIDPSKIVPLLSD 64
++++V + + AV D SN AI+P ++ S
Sbjct: 1781 SLVEVVFYRGMTMQV-----AVPRDEL------------GRSNYGMIAINPGRVAASFSQ 1823
Query: 65 ST-----HAISKTYGCYLS------------SAGHSLRAYYIIDKRG----YLRSMNVSD 103
+ K G + +AG LRA +D +++ +
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD-LRA---LDTVTNVLNFIKLQKIDI 1879
Query: 104 IQVGRNLKEILRQVEA 119
I++ ++L L +VE
Sbjct: 1880 IELQKSLS--LEEVEG 1893
Score = 29.2 bits (65), Expect = 0.57
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 16/45 (35%)
Query: 80 AGHSL----------------RAYYIIDKRGYLRSMNVSDIQVGR 108
AGHSL ++ RG + V ++GR
Sbjct: 1760 AGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR 1804
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 31.1 bits (71), Expect = 0.062
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 27/104 (25%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKI-VPLLSDSTHAISKTYGCYLSSAG 81
FQ++AV+ S R + + ++ D+ A+ + +G
Sbjct: 62 FQVLAVAQPI-----------DPIESVRQYVKDYGLPFTVMYDADKAVGQAFG------- 103
Query: 82 HSLRAY---YIIDKRGYLRSMNV---SDIQVGRNLKEILRQVEA 119
+ Y +I K+G + V ++ + + R +A
Sbjct: 104 --TQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDA 145
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 31.6 bits (72), Expect = 0.062
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 16/100 (16%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSD-STHAISKTYGCYLSS--- 79
++ +S D A + ++ V LS + YG ++
Sbjct: 112 VVLCISSDLPFAQSRFCGAEGLSN-----------VITLSTLRGADFKQAYGVAITEGPL 160
Query: 80 AGHSLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQVE 118
AG + RA ++D + + S V++I N L ++
Sbjct: 161 AGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALAALK 200
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 30.8 bits (70), Expect = 0.084
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGH 82
+++A+ D + W + IV + Y
Sbjct: 64 LRVLAIYPDENRE--EWATKA-------VYMPQGWIVGWNKAGDIRTRQLYDI------R 108
Query: 83 SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEIL 114
+ Y++D R + + S Q+ L
Sbjct: 109 ATPTIYLLDGRKRVILKDTSMEQLIDYLATQA 140
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 30.3 bits (69), Expect = 0.13
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 17/100 (17%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKI-VPLLSDSTHAISKTYGCYLSSAG 81
++AV H+ ++ + I P+ DS HA++ +
Sbjct: 62 LNVVAV-------HMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE------N 108
Query: 82 HSLRAYYIIDKRGYLRSMNV---SDIQVGRNLKEILRQVE 118
+ AYY+ DK G LR + + + +L + E
Sbjct: 109 EYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAETE 148
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys
peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces
cerevisiae} SCOP: c.47.1.10
Length = 159
Score = 29.9 bits (68), Expect = 0.17
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 60 PLLSDSTHAISKTYGCYLSSAGHSLRAYYII-DKRGYLRSMNVSD-IQVGRNLKEILRQV 117
LLSD G + S+R+++I D + + + +S + V KE+L
Sbjct: 94 HLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVA 153
Query: 118 EAFQ 121
E F+
Sbjct: 154 EKFK 157
>3it8_D 2L protein; MHC class I homolog, cell membrane, cytokine, disulfide
bond glycoprotein, lipoprotein, membrane, myristate;
HET: NAG; 2.80A {Yaba-like disease virus}
Length = 324
Score = 30.4 bits (68), Expect = 0.18
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 63 SDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLR 97
S T ++S GCY + Y R
Sbjct: 85 STKTTSLSLITGCYETGLLFGSYGYVETANGPLAR 119
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 29.2 bits (66), Expect = 0.33
Identities = 11/99 (11%), Positives = 30/99 (30%), Gaps = 30/99 (30%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKI-VPLLSDSTHAISKTYGCYLSSAG 81
+I+AV+V A + + + P++ D+ + Y
Sbjct: 60 VEIVAVNVGESKI--AV----------HNFMKSYGVNFPVVLDTDRQVLDAYD------- 100
Query: 82 HSLRAY---YIIDKRGYLRSMNVSDIQVGRNLKEILRQV 117
+ ++I+ G + + G + ++
Sbjct: 101 --VSPLPTTFLINPEGKVVK-----VVTGTMTESMIHDY 132
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 28.0 bits (62), Expect = 1.3
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 20/83 (24%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIV-PLLSDSTHAISKTYGCYLSSAG 81
+I V H + I P+ D+ +A Y
Sbjct: 116 LAVIGV-------HTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYR------- 161
Query: 82 HSLRAY---YIIDKRGYLRSMNV 101
R + Y+ID G +R +
Sbjct: 162 --NRYWPAEYLIDATGTVRHIKF 182
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 27.6 bits (62), Expect = 1.3
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 19/75 (25%)
Query: 59 VPLLSDSTHAISKTYGCYL--SSAGHS----LRAYYIIDKRGYLRSMNVSDIQVGRNLK- 111
PL+SD A+ + + + G R+ +++ G + Q R +K
Sbjct: 94 FPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVV-------QAWRKVKV 146
Query: 112 -----EILRQVEAFQ 121
+L ++A
Sbjct: 147 AGHADAVLAALKAHA 161
>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain,
beta-2 microglobulin, ovalbumin-derived...; MHC-I,
single chain MHC-I, glycoprotein; 1.80A {Mus musculus}
PDB: 2qrs_A 2qri_A
Length = 422
Score = 27.8 bits (62), Expect = 1.4
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 67 HAISKTYGCYLSSAGHSLRAYY 88
H I GC + S G LR Y
Sbjct: 235 HTIQVISGCEVGSDGRLLRGYQ 256
>1k5n_A Major histocompatibility complex molecule HLA-B*2; MHC(major
histocompatibility complex), HLA(human leukocyte A
immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2
d.19.1.1 PDB: 1jgd_A 1of2_A 1uxw_A 1w0w_A 3b3i_A* 3bp7_A
3czf_A* 3hcv_A* 3d18_A* 2bss_A 2bsr_A 2a83_A 1jge_A
1hsa_A 1uxs_A 1w0v_A 1ogt_A 2bst_A 3b6s_A* 3bp4_A ...
Length = 276
Score = 27.6 bits (62), Expect = 1.6
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 67 HAISKTYGCYLSSAGHSLRAYY 88
H + YGC + G LR Y+
Sbjct: 93 HTLQNMYGCDVGPDGRLLRGYH 114
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein;
peptide-MHC complex, immunoglobulin fold system; 2.70A
{Synthetic}
Length = 443
Score = 27.4 bits (61), Expect = 1.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 67 HAISKTYGCYLSSAGHSLRAYY 88
H + +GC + S LR Y
Sbjct: 238 HTFQRMFGCDVGSDWRLLRGYQ 259
>1mhc_A MHC class I antigen H2-M3; histocompatibility antigen/peptide,
histocompatibility antig peptide complex; HET: FME NAG;
2.10A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Length = 282
Score = 27.2 bits (61), Expect = 1.8
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 67 HAISKTYGCYLSSAGHSLRAYY 88
H + C + L A+Y
Sbjct: 93 HILQWMVSCEVGPDMRLLGAHY 114
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 27.0 bits (60), Expect = 1.8
Identities = 7/98 (7%), Positives = 24/98 (24%), Gaps = 24/98 (24%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGH 82
++ +++D+ + K + P+ + Y G+
Sbjct: 58 VDMVGIALDTSDNIGNFLKQTPVS------------YPIWRYTGANSRNFMKTY----GN 101
Query: 83 SLRAY---YIIDKRGYLRSMNVSDIQVGRNLKEILRQV 117
++ + + G ++ L
Sbjct: 102 TVGVLPFTVVEAPKC-----GYRQTITGEVNEKSLTDA 134
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 26.6 bits (59), Expect = 2.1
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 17/91 (18%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSK-IVPLLSDSTHAISKTYGCYLSSAG 81
+++++ D L W K + + Y
Sbjct: 68 LKVLSIYPDEELD--EWKKHRND--------FAKEWTNGYDKELVIKNKNLYDL------ 111
Query: 82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKE 112
++ Y++DK + + + +V + L E
Sbjct: 112 RAIPTLYLLDKNKTVLLKDATLQKVEQYLAE 142
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 26.6 bits (59), Expect = 2.2
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 21/67 (31%)
Query: 60 PLLSDSTHAISKTYGCYLSSAGHSLRAY---YIIDKRGYLRSMNVSDIQVG----RNLKE 112
P+++D+ I++ + Y +I K G ++ I G
Sbjct: 104 PVVTDNGGTIAQNLN---------ISVYPSWALIGKDGDVQ-----RIVKGSINEAQALA 149
Query: 113 ILRQVEA 119
++R A
Sbjct: 150 LIRNPNA 156
>1zs8_A Histocompatibility 2, M region locus 10.5; major histocompatibility
complex, MHC, vomeronasal organ, VN receptors, pheromone
receptors, pepti immune system; HET: NAG; 3.00A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 274
Score = 26.5 bits (59), Expect = 3.1
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 67 HAISKTYGCYLSSAGHSLRAYY 88
H + + +GC ++ G L +Y
Sbjct: 92 HTLQEVFGCNVAHDGSFLGGHY 113
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 26.1 bits (58), Expect = 3.3
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 19/75 (25%)
Query: 59 VPLLSDSTHAISKTYGCYL--SSAGHS----LRAYYIIDKRGYLRSMNVSDIQVGRNLK- 111
PL+SDS + K + + G R+ ++I + ++ R +K
Sbjct: 110 FPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRI-------VEAWRQVKV 162
Query: 112 -----EILRQVEAFQ 121
E+L +++A
Sbjct: 163 PGHAEEVLNKLKAHA 177
>1r3h_A MHC H2-TL-T10-129; class IB MHC, gammadelta T cell ligand, immune
system; 2.50A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB:
1c16_A 1ypz_A*
Length = 260
Score = 26.5 bits (59), Expect = 3.8
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 67 HAISKTYGCYLSSAGHSLRAYY 88
H + C + H Y
Sbjct: 90 HTLQWLQDCDVEPDRHLCLWYN 111
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 25.9 bits (57), Expect = 3.9
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 14/73 (19%)
Query: 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
PF+II VS D + + + + A +P S ++ YG
Sbjct: 61 PFEIIFVSSDRSED--DMFQYMMESHGDWLA------IPYRSGPASNVTAKYGI------ 106
Query: 82 HSLRAYYIIDKRG 94
+ A I+ K G
Sbjct: 107 TGIPALVIVKKDG 119
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain;
LCMV, MHC class I, immune escape, immune system; 1.99A
{Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A
1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A
1nez_A*
Length = 348
Score = 26.0 bits (57), Expect = 6.2
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 67 HAISKTYGCYLSSAGHSLRAYY 88
H I GC + S G LR Y
Sbjct: 93 HTIQVISGCEVGSDGRLLRGYQ 114
>3d2u_A UL18 protein; MHC class I homolog, disease mutation, glycation,
glycoprote immune response, immunoglobulin domain, MHC
I, pyrrolidone carboxylic acid; HET: NAG MAN BMA FUC;
2.21A {Human herpesvirus 5}
Length = 281
Score = 25.4 bits (56), Expect = 8.1
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 67 HAISKTYGCYLSSAGHSLRAYY 88
++ T+ C + G + Y
Sbjct: 94 SVLTWTHECNTTENGSFVAGYE 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.377
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,089,090
Number of extensions: 106654
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 70
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)