RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17183
(145 letters)
>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 197
Score = 83.7 bits (206), Expect = 1e-21
Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
+++ VSVDS HLAW T + P I PLL+D T +S+ YG + G
Sbjct: 68 GCEVLGVSVDSQFTHLAWINT----PRKEGGLGPLNI-PLLADVTRRLSEDYGVLKTDEG 122
Query: 82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQPSV 141
+ R +IID +G LR + V+D+ VGR++ E LR V+AFQ D CP W G ++
Sbjct: 123 IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTI 182
Query: 142 K 142
K
Sbjct: 183 K 183
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Length = 194
Score = 81.4 bits (200), Expect = 1e-20
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVP 60
+ C + +++A S+DS +HLAW + + +P
Sbjct: 48 VCPTEICQFSDR--VKEFSDIGCEVLACSMDSEYSHLAW-----TSIERKRGGLGQMNIP 100
Query: 61 LLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120
+L+D T I K+YG G + R +IID + LR + V+D+ VGR++ E LR V+AF
Sbjct: 101 ILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 160
Query: 121 QLVDSTDTQCPVNWTTGQPSVK 142
Q V+ CP NW G ++K
Sbjct: 161 QFVEKHGEVCPANWKPGDKTMK 182
>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii
[TaxId: 5861]}
Length = 170
Score = 73.4 bits (179), Expect = 8e-18
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 6/114 (5%)
Query: 24 QIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGHS 83
+++ SVDS HLAW KT ++ I K L+SD + +I+++Y + +
Sbjct: 63 ELLGCSVDSKFTHLAWKKT----PLSQGGIGNIKH-TLISDISKSIARSYDVL-FNESVA 116
Query: 84 LRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTG 137
LRA+ +IDK+G ++ + V+++ +GR++ EILR ++A Q + CP NW G
Sbjct: 117 LRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKG 170
>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 71.8 bits (175), Expect = 2e-17
Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGH 82
+++AVSVDSH +HLAW T ++ + LLSD T IS+ YG L G
Sbjct: 61 CEVVAVSVDSHFSHLAWINT-----PRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGL 115
Query: 83 SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDS 125
+LR +IID G ++ ++V+D+ VGR+++E LR V+AFQ V++
Sbjct: 116 ALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEA 158
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Crithidia fasciculata [TaxId:
5656]}
Length = 167
Score = 67.2 bits (163), Expect = 1e-15
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
++I+ S DS +HL W + + +P+L+D T AI++ YG +G
Sbjct: 67 NTEVISCSCDSEYSHLQW-----TSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSG 121
Query: 82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVD 124
+ R +IID G LR + ++D+ +GRN++E++R VEA Q V+
Sbjct: 122 VAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVE 164
>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC
{Salmonella typhimurium [TaxId: 90371]}
Length = 186
Score = 66.8 bits (162), Expect = 3e-15
Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
+ +VS D+H H AW + + + ++ D T A+++ + G
Sbjct: 64 GVDVYSVSTDTHFTHKAWHSSSETIAKIK--------YAMIGDPTGALTRNFDNMREDEG 115
Query: 82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDS-TDTQCPVNWTTGQPS 140
+ RA +++D +G ++++ V+ +GR+ ++LR+++A Q V + CP W G+ +
Sbjct: 116 LADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEAT 175
Query: 141 VKVAL 145
+ +L
Sbjct: 176 LAPSL 180
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii
yoelii [TaxId: 73239]}
Length = 219
Score = 65.6 bits (159), Expect = 1e-14
Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 13/147 (8%)
Query: 1 MDTKIACDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVP 60
+ T ++ K+ E + ++I S +S +H W + +P
Sbjct: 45 VCTTELAELGKM--HEDFLKLNCKLIGFSCNSKESHDKWIED-----IKYYGKLNKWEIP 97
Query: 61 LLSDSTHAISKTYGC------YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEIL 114
++ D + ++ ++ + R + I +++ + GRN EIL
Sbjct: 98 IVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEIL 157
Query: 115 RQVEAFQLVDSTDTQCPVNWTTGQPSV 141
R +++ QL +T PVNW G
Sbjct: 158 RVLKSLQLTYTTPVATPVNWNEGDKCC 184
>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC
{Amphibacillus xylanus [TaxId: 1449]}
Length = 166
Score = 63.8 bits (154), Expect = 3e-14
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
++ +VS D+H H AW + A S ++ D + IS+ + G
Sbjct: 65 GVEVYSVSTDTHFVHKAWHENSPAVGSIE--------YIMIGDPSQTISRQFDVLNEETG 116
Query: 82 HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDST 126
+ R +IID G ++++ ++ +GR+ ++ +V+A Q V
Sbjct: 117 LADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVREN 161
>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId:
56636]}
Length = 237
Score = 64.8 bits (157), Expect = 4e-14
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 23 FQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAGH 82
+I +SVDS +H+ W + I P+++D +++ G + +
Sbjct: 64 VDLIGLSVDSVFSHIKWKEW------IERHIGVRIPFPIIADPQGTVARRLGLLHAESAT 117
Query: 83 -SLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWTTGQ 138
++R +I+D RG +R+M +++GR + EILR V+A +L DS P +W +
Sbjct: 118 HTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNE 174
>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 220
Score = 64.4 bits (156), Expect = 4e-14
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Query: 22 PFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDSTHAISKTYGCYLSSAG 81
++IA+S+DS HLAW+K + A +S P++ D ++ G +
Sbjct: 61 NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLP--FPIIDDRNRELAILLGMLDPAEK 118
Query: 82 ------HSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAFQLVDSTDTQCPVNWT 135
+ R ++ L+ + GRN EILR V + QL PV+W
Sbjct: 119 DEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWK 178
Query: 136 TGQPSVKV 143
G + +
Sbjct: 179 DGDSVMVL 186
>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA
{Helicobacter pylori [TaxId: 210]}
Length = 170
Score = 60.6 bits (146), Expect = 5e-13
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 60 PLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEA 119
P+++D T +IS+ Y L +LR ++IDK +R ++D+ +GRN E+LR V+A
Sbjct: 100 PMVADITKSISRDYDV-LFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA 158
Query: 120 FQLVDSTDTQCP 131
+ CP
Sbjct: 159 LLHFEEHGEVCP 170
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 51.2 bits (121), Expect = 2e-09
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 59 VPLLSDSTHAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVE 118
P+LSD +S+ G ++ G + R +I+D ++ ++ + VGRN+ E+LR ++
Sbjct: 107 FPMLSDIKRELSQAAGVL-NADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLD 165
Query: 119 AFQ 121
A Q
Sbjct: 166 ALQ 168
>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 163
Score = 45.3 bits (106), Expect = 3e-07
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 11/114 (9%)
Query: 7 CDVLKLVRKEILIVSPFQIIAVSVDSHLAHLAWTKTLTATSSNRSAIDPSKIVPLLSDST 66
+ +E+ + ++ VS+D A W A + L
Sbjct: 59 STQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCG----------AEGLDNAIMLSDYFD 108
Query: 67 HAISKTYGCYLSSAGHSLRAYYIIDKRGYLR-SMNVSDIQVGRNLKEILRQVEA 119
H+ + Y ++ RA +++D +R V +I N + + +A
Sbjct: 109 HSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162
>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 156
Score = 43.8 bits (102), Expect = 9e-07
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 63 SDSTHAISKTYGCYLSSAGHSLRAYYII-DKRGYLRSMNVS-DIQVGRNLKEILRQVEAF 120
SD G + S+R+++I D + + + +S ++ V KE+L E F
Sbjct: 95 SDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 154
Query: 121 Q 121
+
Sbjct: 155 K 155
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 153
Score = 39.3 bits (90), Expect = 4e-05
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 60 PLLSDST--HAISKTYGCYLSSAGHSLRAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQV 117
PLLSD A+S+ YG + AG + R +++D+ G +R + R+ + +
Sbjct: 89 PLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDAL 148
Query: 118 EA 119
A
Sbjct: 149 AA 150
>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 26.8 bits (58), Expect = 0.85
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 60 PLLSDSTHAISKTYGCYLSSAGHSL------RAYYIIDKRGYLRSMNVSDIQVGRNLKEI 113
LL+D T A K L + S+ + + ++ + G ++++NV G
Sbjct: 95 RLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLA 154
Query: 114 LRQVEA 119
+
Sbjct: 155 PNIISQ 160
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ),
soluble domain {Baker's yeast(Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 169
Score = 25.9 bits (55), Expect = 1.5
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 85 RAYYIIDKRGYLRSMNVSDIQVGRNLKEILRQVEAF 120
+Y++D G + + +I+ V+++
Sbjct: 131 IFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 166
>d1lqva_ d.19.1.1 (A:) Endothelial protein C receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 24.4 bits (53), Expect = 5.1
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 67 HAISKTYGCYLSSAGHSLRAYY 88
I GC L G ++
Sbjct: 87 LTIRCFLGCELPPEGSRAHVFF 108
>d2f6sa1 a.265.1.1 (A:1-177) Cell filamentation protein Fic
{Helicobacter pylori [TaxId: 210]}
Length = 177
Score = 23.8 bits (51), Expect = 7.8
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Query: 76 YLSSAGHSLRAYYIIDKRGYLRSMNVSDIQ-------VGRNLKEILRQVEAF 120
L + + IDK YL +M S + + ++L
Sbjct: 113 LLKKELKKIVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTNDPLTL 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.377
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 501,372
Number of extensions: 19511
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 20
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)