BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17184
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 70/108 (64%), Gaps = 2/108 (1%)
Query: 63 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSG 122
+A K + ++++E + WIE VTG++ G + D +KDG ILC INKL+PGSV KIN S
Sbjct: 10 LAQKYDHQREQELREWIEGVTGRRI--GNNFMDGLKDGIILCEFINKLQPGSVKKINEST 67
Query: 123 GQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYAL 170
+ +ENI NF KAI YGV D+F+ DL+E + QV +T+ AL
Sbjct: 68 QNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLAL 115
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 69 PEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFM 128
P+ +++ + WIE TG++ G + D +KDG ILC LINKL+PGSV K+N + +
Sbjct: 2 PQTERQLRVWIEGATGRRI--GDNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKL 59
Query: 129 ENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGRE 173
ENI NF +AIK YGV D+F+ DL+E + QV +T+ AL +
Sbjct: 60 ENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALASQ 104
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 71/108 (65%), Gaps = 2/108 (1%)
Query: 63 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSG 122
+ +K +P+++ E + WIE +TG G ++ +KDG ILC L+NKL+PGSV KIN S
Sbjct: 10 LLSKYDPQKEAELRTWIEGLTG--LSIGPDFQKGLKDGTILCTLMNKLQPGSVPKINRSM 67
Query: 123 GQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYAL 170
+ +EN++NF KA+ YG+ +D+F+ DL+E ++ QV ++ AL
Sbjct: 68 QNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLAL 115
>pdb|1WYM|A Chain A, Solution Structure Of The Ch Domain Of Human Transgelin-2
Length = 155
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 7/108 (6%)
Query: 78 WIETVT----GQKFPAGVLYEDAIKDGQILCHLINKLKP---GSVAKINSSGGQFKFMEN 130
WI T G+ P +++ +KDG +LC LIN L P V KI +S FK ME
Sbjct: 25 WITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQ 84
Query: 131 INNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFLRD 178
I+ F +A + YG+ D+FQTVDL+E K++A V T+ LG RD
Sbjct: 85 ISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARD 132
>pdb|1UJO|A Chain A, Solution Structure Of The Ch Domain From Mouse Trangelin
Length = 144
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 97 IKDGQILCHLINKLKPGSVAKI----NSSGGQFKFMENINNFQKAIKDYGVADIDVFQTV 152
+K+G IL L+N L P + N FK ME + F KA +DYGV D+FQTV
Sbjct: 40 LKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTV 99
Query: 153 DLYEKKDIAQVTNTIYALG 171
DLYE KD+A V T+ ALG
Sbjct: 100 DLYEGKDMAAVQRTLMALG 118
>pdb|1P5S|A Chain A, Structure And Function Of The Calponin-Homology Domain Of
An Iqgap Protein From Schizosaccharomyces Pombe
Length = 203
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 74 EAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGG-QFKFMENIN 132
EA+ WIE G +E ++++G +L L+ K +P + KI S QF+ +NIN
Sbjct: 59 EAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNIN 118
Query: 133 NFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFLRDFSEEQLQAGKTI 190
F I G+ +I F+ D+YE K++ +V I+AL + ++D + +++ + +
Sbjct: 119 KFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENL 176
>pdb|1P2X|A Chain A, Crystal Structure Of The Calponin-Homology Domain Of Rng2
From Schizosaccharomyces Pombe
Length = 159
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 74 EAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGG-QFKFMENIN 132
EA+ WIE G +E ++++G +L L+ K +P + KI S QF+ +NIN
Sbjct: 15 EAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNIN 74
Query: 133 NFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFLRDFSEEQLQAGKTI 190
F I G+ +I F+ D+YE K++ +V I+AL + ++D + +++ + +
Sbjct: 75 KFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENL 132
>pdb|2RR8|A Chain A, Solution Structure Of Calponin Homology Domain Of Iqgap1
Length = 190
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 23/140 (16%)
Query: 73 KEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVA----------KINSSG 122
+EA+ W+E G+ P E+ +++G L L N P V+ + ++G
Sbjct: 28 EEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATG 87
Query: 123 GQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFLR----- 177
F+ +N+ + A+ + G+ I +T D+Y++K++ + I+AL +F
Sbjct: 88 LHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKLGLAPQ 147
Query: 178 --------DFSEEQLQAGKT 189
DF+EE++ KT
Sbjct: 148 IQDLYGKVDFTEEEINNMKT 167
>pdb|3I6X|A Chain A, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|B Chain B, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|C Chain C, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|D Chain D, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
Length = 193
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 23/140 (16%)
Query: 73 KEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVA----------KINSSG 122
+EA+ W+E G+ P E+ +++G L L N P V+ + ++G
Sbjct: 50 EEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATG 109
Query: 123 GQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFLR----- 177
F+ +N+ + A+ + G+ I +T D+Y++K++ + I+AL +F
Sbjct: 110 LHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKLGLAPQ 169
Query: 178 --------DFSEEQLQAGKT 189
DF+EE++ KT
Sbjct: 170 IQDLYGKVDFTEEEINNMKT 189
>pdb|2D86|A Chain A, Solution Structure Of The Ch Domain From Human Vav-3
Protein
Length = 143
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 96 AIKDGQILCHLINKLKPGSV----AKINSSGGQFKFMENINNFQKA-IKDYGVADIDVFQ 150
++DG +LC L+N L+ S+ + QF ++NI F A + +G+ ++F+
Sbjct: 43 TLRDGVLLCQLLNNLRAHSINLKEINLRPQMSQFLCLKNIRTFLTACCETFGMRKSELFE 102
Query: 151 TVDLYEKKDIAQVTNTIYALGR 172
DL++ +D +V T+ L R
Sbjct: 103 AFDLFDVRDFGKVIETLSRLSR 124
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSVAKIN-SSGGQFKFMENINNFQKAIKDYGVADIDVFQ 150
+ ++K+G +LC LIN+L PGSV K + + NIN+F +K +++F
Sbjct: 34 FLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDF---LKGCATLQVEIFD 90
Query: 151 TVDLYEKKDIAQVTNTIYALGR 172
DLY + ++V +T+ A+ +
Sbjct: 91 PDDLYSGVNFSKVLSTLLAVNK 112
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSI 63
+ ++K+G +LC LIN+L PGS+
Sbjct: 34 FLKSSLKNGVVLCKLINRLMPGSV 57
>pdb|2L3G|A Chain A, Solution Nmr Structure Of Ch Domain Of Rho Guanine
Nucleotide Exchange Factor 7 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4495e
Length = 126
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 88 PAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKDYGVA-DI 146
P G L + ++KDG +LC L+ +L PG++ K+ E ++N ++ ++ G + +
Sbjct: 37 PEGFL-QASLKDGVVLCRLLERLLPGTIEKVYPEPRSES--ECLSNIREFLRGCGASLRL 93
Query: 147 DVFQTVDLYEKKDIAQVTNTIYALGR 172
+ F DLY+ ++ +V +++ L +
Sbjct: 94 ETFDANDLYQGQNFNKVLSSLVTLNK 119
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 36 PAGVLYEDAIKDGQILCHLINKLKPGSIAAKRNPEQDKEAQA 77
P G L + ++KDG +LC L+ +L PG+I K PE E++
Sbjct: 37 PEGFL-QASLKDGVVLCRLLERLLPGTI-EKVYPEPRSESEC 76
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 96 AIKDGQILCHLINKLKPGSV----AKINSSGGQFKFMENINNF-QKAIKDYGVADIDVFQ 150
A++DG +LC L+N L P ++ + QF ++NI F + +G+ ++F+
Sbjct: 39 ALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEKFGLKRSELFE 98
Query: 151 TVDLYEKKDIAQVTNTIYALG 171
DL++ +D +V T+ AL
Sbjct: 99 AFDLFDVQDFGKVIYTLSALS 119
>pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec
6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351)
From Thermotoga Maritima At 2.5 A Resolution
Length = 481
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 134 FQKAIKDYGVADIDVFQTVD--LYEKKDIAQVTNTIYALGREVFLR 177
F+K +K +GV + + T+ L +++ ++ N I LG+E+FLR
Sbjct: 428 FKKVLKQHGVKPKEFYXTLRRVLTGREEGPELVNIIPLLGKEIFLR 473
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSI 63
LYE +KDG +LC LIN PG+I
Sbjct: 39 LYE-LVKDGVLLCKLINVAVPGTI 61
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSV 115
LYE +KDG +LC LIN PG++
Sbjct: 39 LYE-LVKDGVLLCKLINVAVPGTI 61
>pdb|3Q9D|A Chain A, Crystal Structure Of Cpn0803 From C. Pneumoniae.
pdb|3Q9D|B Chain B, Crystal Structure Of Cpn0803 From C. Pneumoniae
Length = 220
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 30 VTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSIAAKRNPEQDKEAQAWIETVTGQK 86
V GQ+F + D Q CHLI L + A++NP +K Q E +T K
Sbjct: 160 VDGQEFLL-------MTDVQNTCHLIRHLLARLLEAQKNPVGEKNLQEIQEEITSLK 209
>pdb|3LET|A Chain A, Crystal Structure Of Fic Domain Containing Ampylator, Vops
pdb|3LET|B Chain B, Crystal Structure Of Fic Domain Containing Ampylator, Vops
Length = 314
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 21/148 (14%)
Query: 24 QAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSIAAKRNPE------------- 70
+ +ET +G+ A ++ +DA+K + ++ G AA++NPE
Sbjct: 71 EVMLETDSGKNLKA-LIGDDAVK--SLAVRVVKDYGGGVAAAQKNPEVRINQMQAVFDME 127
Query: 71 --QDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFM 128
K AQ IE + GV E +D + N ++ + IN+S +
Sbjct: 128 VMHLKAAQRHIEGLASTDLNQGVYAEGLPEDAFNKAGVTNNVERAAAWIINASNSKGNDA 187
Query: 129 ENINNFQKAIKDYGVADIDVFQTVDLYE 156
ENI + +K+Y D+ +L E
Sbjct: 188 ENITSL---LKEYATNGKDLLNMDNLKE 212
>pdb|3S4W|B Chain B, Structure Of The Fanci-Fancd2 Complex
Length = 1323
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 125 FKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFLRDFSEEQL 184
+ ++E+ +N KAI++ + + V + V KD A ++T L R F+ F
Sbjct: 1093 YIYLEHTDNVLKAIEE--ITGVGVPELVS--APKDAA--SSTFPTLTRHTFVIFFRVMMA 1146
Query: 185 QAGKTIIGLQAGSNKGATQ 203
+ KT+ GLQAG+ + Q
Sbjct: 1147 ELEKTVKGLQAGTAADSQQ 1165
>pdb|2WII|A Chain A, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|A Chain A, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|C Chain C, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|E Chain E, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|G Chain G, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L3O|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|D Chain D, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L5N|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
pdb|3NMS|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|A Chain A, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|D Chain D, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|2XWJ|A Chain A, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|C Chain C, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|E Chain E, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|G Chain G, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|3T4A|A Chain A, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
pdb|3T4A|D Chain D, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
Length = 645
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 81 TVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKD 140
TVT FP L + K +L N + G+V + +FK + N F
Sbjct: 34 TVTVHDFPGKKLVLSSEKT--VLTPATNHM--GNVTFTIPANREFKSEKGRNKFVTVQAT 89
Query: 141 YGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFLRDFS--EEQLQAGKTII 191
+G ++ V L Q TIY G V R F+ + L G+T++
Sbjct: 90 FGTQVVEKVVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHKLLPVGRTVM 142
>pdb|3G6J|A Chain A, C3b In Complex With A C3b Specific Fab
pdb|3G6J|C Chain C, C3b In Complex With A C3b Specific Fab
Length = 644
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 81 TVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKD 140
TVT FP L + K +L N + G+V + +FK + N F
Sbjct: 34 TVTVHDFPGKKLVLSSEKT--VLTPATNHM--GNVTFTIPANREFKSEKGRNKFVTVQAT 89
Query: 141 YGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFLRDFS--EEQLQAGKTII 191
+G ++ V L Q TIY G V R F+ + L G+T++
Sbjct: 90 FGTQVVEKVVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHKLLPVGRTVM 142
>pdb|2XWB|A Chain A, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|C Chain C, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 642
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 81 TVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKD 140
TVT FP L + K +L N + G+V + +FK + N F
Sbjct: 34 TVTVHDFPGKKLVLSSEKT--VLTPATNHM--GNVTFTIPANREFKSEKGRNKFVTVQAT 89
Query: 141 YGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFLRDFS--EEQLQAGKTII 191
+G ++ V L Q TIY G V R F+ + L G+T++
Sbjct: 90 FGTQVVEKVVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHKLLPVGRTVM 142
>pdb|2ICE|A Chain A, Crig Bound To C3c
pdb|2ICE|D Chain D, Crig Bound To C3c
pdb|2ICF|A Chain A, Crig Bound To C3b
Length = 642
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 81 TVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKD 140
TVT FP L + K +L N + G+V + +FK + N F
Sbjct: 34 TVTVHDFPGKKLVLSSEKT--VLTPATNHM--GNVTFTIPANREFKSEKGRNKFVTVQAT 89
Query: 141 YGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFLRDFS--EEQLQAGKTII 191
+G ++ V L Q TIY G V R F+ + L G+T++
Sbjct: 90 FGTQVVEKVVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHKLLPVGRTVM 142
>pdb|2A73|A Chain A, Human Complement Component C3
pdb|2A74|A Chain A, Human Complement Component C3c
pdb|2A74|D Chain D, Human Complement Component C3c
pdb|2QKI|A Chain A, Human C3c In Complex With The Inhibitor Compstatin
pdb|2QKI|D Chain D, Human C3c In Complex With The Inhibitor Compstatin
Length = 643
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 81 TVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKD 140
TVT FP L + K +L N + G+V + +FK + N F
Sbjct: 34 TVTVHDFPGKKLVLSSEKT--VLTPATNHM--GNVTFTIPANREFKSEKGRNKFVTVQAT 89
Query: 141 YGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFLRDFS--EEQLQAGKTII 191
+G ++ V L Q TIY G V R F+ + L G+T++
Sbjct: 90 FGTQVVEKVVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHKLLPVGRTVM 142
>pdb|2HR0|A Chain A, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2I07|A Chain A, Human Complement Component C3b
Length = 645
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 81 TVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKD 140
TVT FP L + K +L N + G+V + +FK + N F
Sbjct: 34 TVTVHDFPGKKLVLSSEKT--VLTPATNHM--GNVTFTIPANREFKSEKGRNKFVTVQAT 89
Query: 141 YGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFLRDFS--EEQLQAGKTII 191
+G ++ V L Q TIY G V R F+ + L G+T++
Sbjct: 90 FGTQVVEKVVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHKLLPVGRTVM 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,501,018
Number of Sequences: 62578
Number of extensions: 267976
Number of successful extensions: 711
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 36
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)