Query psy17184
Match_columns 218
No_of_seqs 232 out of 1302
Neff 7.5
Searched_HMMs 46136
Date Sat Aug 17 00:00:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2046|consensus 100.0 1.4E-52 2.9E-57 336.9 14.2 165 1-217 8-191 (193)
2 COG5199 SCP1 Calponin [Cytoske 100.0 1.4E-35 3E-40 227.8 9.2 156 7-215 2-178 (178)
3 cd00014 CH Calponin homology d 99.7 5.8E-18 1.3E-22 125.4 7.7 102 71-173 2-105 (107)
4 KOG2128|consensus 99.7 4.8E-18 1E-22 166.9 8.2 114 72-186 44-171 (1401)
5 COG5261 IQG1 Protein involved 99.7 3.3E-17 7.1E-22 154.5 8.2 113 73-186 47-172 (1054)
6 PF00402 Calponin: Calponin fa 99.7 6.4E-18 1.4E-22 92.6 1.5 25 191-215 1-26 (26)
7 smart00033 CH Calponin homolog 99.6 2.3E-15 4.9E-20 110.4 6.9 98 72-170 2-103 (103)
8 KOG0532|consensus 99.5 6.8E-15 1.5E-19 135.3 6.5 106 70-177 576-689 (722)
9 PF00307 CH: Calponin homology 99.5 5.8E-13 1.2E-17 98.5 9.5 100 72-173 1-106 (108)
10 KOG2996|consensus 99.4 7.4E-13 1.6E-17 121.4 8.0 110 72-181 4-131 (865)
11 cd00014 CH Calponin homology d 99.1 3.2E-10 7E-15 83.6 6.9 85 19-104 2-94 (107)
12 KOG2128|consensus 99.0 8.3E-10 1.8E-14 109.7 9.5 131 9-141 34-179 (1401)
13 smart00033 CH Calponin homolog 98.9 5.4E-09 1.2E-13 76.3 7.3 89 20-109 2-100 (103)
14 COG5261 IQG1 Protein involved 98.8 2E-08 4.3E-13 95.9 8.4 102 20-122 46-161 (1054)
15 PF00307 CH: Calponin homology 98.7 6.8E-08 1.5E-12 71.1 7.9 82 20-101 1-92 (108)
16 KOG0532|consensus 98.6 7.6E-08 1.6E-12 89.4 5.9 68 22-91 580-657 (722)
17 KOG2046|consensus 98.4 3.1E-07 6.8E-12 74.6 4.7 46 63-108 18-63 (193)
18 KOG0046|consensus 98.0 4.2E-06 9.1E-11 76.9 3.6 86 73-159 122-220 (627)
19 PF11971 CAMSAP_CH: CAMSAP CH 97.9 8.4E-06 1.8E-10 58.4 2.9 69 87-156 10-83 (85)
20 PF06395 CDC24: CDC24 Calponin 97.8 5.5E-05 1.2E-09 54.4 5.6 78 92-169 5-87 (89)
21 COG5199 SCP1 Calponin [Cytoske 97.5 0.00013 2.7E-09 57.1 4.6 43 66-108 9-51 (178)
22 KOG2996|consensus 97.5 0.00032 6.9E-09 65.6 7.1 74 21-94 5-95 (865)
23 KOG0046|consensus 96.9 0.00079 1.7E-08 62.3 3.3 49 15-63 116-173 (627)
24 PF11971 CAMSAP_CH: CAMSAP CH 93.8 0.026 5.6E-07 40.4 0.8 28 38-65 13-40 (85)
25 PF06395 CDC24: CDC24 Calponin 92.2 0.28 6.1E-06 35.3 4.3 60 40-99 5-73 (89)
26 COG5069 SAC6 Ca2+-binding acti 91.5 0.24 5.2E-06 45.9 4.1 71 77-147 132-211 (612)
27 KOG0517|consensus 90.9 0.5 1.1E-05 50.1 6.1 85 71-157 49-134 (2473)
28 KOG3631|consensus 78.8 9.5 0.00021 33.2 7.0 102 71-175 91-196 (365)
29 PF06294 DUF1042: Domain of Un 78.7 3.1 6.7E-05 33.1 3.9 91 75-171 1-99 (158)
30 KOG0517|consensus 71.1 65 0.0014 35.3 11.8 131 19-158 49-253 (2473)
31 PF05622 HOOK: HOOK protein; 54.9 36 0.00078 33.5 6.6 45 16-63 5-49 (713)
32 cd08757 SAM_PNT_ESE Sterile al 54.8 11 0.00023 25.6 2.1 37 72-108 7-45 (68)
33 PF06992 Phage_lambda_P: Repli 54.1 37 0.0008 28.8 5.6 69 57-146 49-123 (233)
34 PF03494 Beta-APP: Beta-amyloi 52.1 6.3 0.00014 23.3 0.5 10 193-202 19-28 (39)
35 KOG3000|consensus 50.9 36 0.00079 29.9 5.2 41 72-116 17-57 (295)
36 PF06294 DUF1042: Domain of Un 47.4 24 0.00052 28.0 3.4 54 23-78 1-57 (158)
37 cd08535 SAM_PNT-Tel_Yan Steril 46.5 20 0.00043 24.4 2.4 36 72-108 8-44 (68)
38 cd08203 SAM_PNT Sterile alpha 45.2 23 0.0005 23.7 2.5 36 72-108 7-43 (66)
39 cd08531 SAM_PNT-ERG_FLI-1 Ster 44.4 22 0.00048 24.6 2.4 36 71-107 9-46 (75)
40 cd08532 SAM_PNT-PDEF-like Ster 44.0 19 0.00042 25.0 2.1 36 71-108 14-50 (76)
41 cd08536 SAM_PNT-Mae Sterile al 40.9 23 0.00051 23.9 2.0 36 72-108 7-43 (66)
42 cd08538 SAM_PNT-ESE-2-like Ste 36.3 34 0.00074 24.0 2.3 37 72-108 12-50 (78)
43 smart00251 SAM_PNT SAM / Point 36.3 32 0.0007 24.1 2.2 37 71-108 21-58 (82)
44 KOG0035|consensus 36.0 28 0.00061 35.1 2.5 83 77-162 149-233 (890)
45 smart00165 UBA Ubiquitin assoc 34.9 37 0.00079 19.4 2.0 26 1-27 11-36 (37)
46 cd08534 SAM_PNT-GABP-alpha Ste 33.8 40 0.00087 24.2 2.4 37 71-108 23-60 (89)
47 cd08540 SAM_PNT-ERG Sterile al 33.4 39 0.00084 23.4 2.2 37 71-108 9-47 (75)
48 cd08533 SAM_PNT-ETS-1,2 Steril 33.3 37 0.00079 23.3 2.1 37 71-108 8-45 (71)
49 cd08542 SAM_PNT-ETS-1 Sterile 31.9 36 0.00077 24.4 1.9 36 71-107 23-59 (88)
50 PF09337 zf-H2C2: His(2)-Cys(2 30.5 61 0.0013 19.4 2.5 29 1-30 6-35 (39)
51 PF00627 UBA: UBA/TS-N domain; 30.4 41 0.0009 19.5 1.7 26 1-27 12-37 (37)
52 cd08541 SAM_PNT-FLI-1 Sterile 29.3 58 0.0013 23.5 2.6 37 71-108 21-59 (91)
53 COG5069 SAC6 Ca2+-binding acti 28.6 38 0.00083 31.9 1.9 41 23-63 130-172 (612)
54 KOG3631|consensus 28.2 57 0.0012 28.5 2.8 42 19-61 91-133 (365)
55 cd08543 SAM_PNT-ETS-2 Sterile 26.8 50 0.0011 23.7 1.9 36 71-107 23-59 (89)
56 PF02198 SAM_PNT: Sterile alph 24.6 75 0.0016 22.1 2.5 37 71-108 21-58 (84)
57 cd00194 UBA Ubiquitin Associat 23.9 74 0.0016 18.2 2.0 26 1-27 11-36 (38)
58 cd08539 SAM_PNT-ESE-3-like Ste 23.9 90 0.0019 21.7 2.7 38 71-108 9-48 (74)
59 PF09370 TIM-br_sig_trns: TIM- 23.6 87 0.0019 27.2 3.1 73 130-202 96-185 (268)
60 PF03221 HTH_Tnp_Tc5: Tc5 tran 22.3 81 0.0018 20.1 2.2 21 17-37 2-22 (66)
61 PF03216 Rhabdo_ncap_2: Rhabdo 21.1 2.7E+02 0.0059 24.6 5.6 82 85-175 158-261 (357)
62 PF07882 Fucose_iso_N2: L-fuco 20.8 1.4E+02 0.0029 24.4 3.5 28 5-32 37-65 (181)
63 PF09441 Abp2: ARS binding pro 20.7 4.5E+02 0.0098 21.1 6.5 33 73-105 110-149 (175)
64 KOG0081|consensus 20.4 3.6E+02 0.0079 21.9 5.8 38 130-171 143-180 (219)
No 1
>KOG2046|consensus
Probab=100.00 E-value=1.4e-52 Score=336.89 Aligned_cols=165 Identities=52% Similarity=0.778 Sum_probs=144.8
Q ss_pred CChHHHHHHHHHccCChhHHHHHHHHHHHHhCCCCCCchhHHHHhhhhhHHHhhhhhccCCCccCCCChhhHHHHHHHHH
Q psy17184 1 MSLQRQVAAKIAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSIAAKRNPEQDKEAQAWIE 80 (218)
Q Consensus 1 ~gl~~e~~~k~~~ky~~~~~~e~~~Wie~~~g~~i~~~~~~~~~LkdGvvLC~L~n~l~P~~i~kk~~~~~e~~i~~wie 80 (218)
+||++||++|+++|||+++|.|++.||+.++....+...+|++.||||++||+|+|+|+|
T Consensus 8 ~gl~~~v~~k~~~k~~~~~~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p-------------------- 67 (193)
T KOG2046|consen 8 YGLSREVQQKIESKYDDELEKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYP-------------------- 67 (193)
T ss_pred cchHHHHHHHhhcccCHHHHHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCc--------------------
Confidence 599999999999999999999999999998655544344566666666666665555554
Q ss_pred HhhCCCCCCccchHHhhhchhHHHHHHHhhCCCCcccccCCCCccccchhHHHHHHHHHHhCCCccCccccchhccccCh
Q psy17184 81 TVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDI 160 (218)
Q Consensus 81 ~~l~~~l~~~d~f~~~l~dG~iLc~L~n~l~pg~i~ki~~~~~~f~~~eNI~~Fl~~~~~~Gv~~~~lF~~~DL~e~kn~ 160 (218)
+.+++++.+.++|.++|||++|+.+|++|||+..++|+|+||||++|+
T Consensus 68 --------------------------------~~~~~~~~s~~~f~qmEnIs~Fi~a~~~ygv~~~d~FqtvDLfE~kd~ 115 (193)
T KOG2046|consen 68 --------------------------------GVVKKINESKMAFVQMENISNFIKAAKKYGVPEVDLFQTVDLFEGKDM 115 (193)
T ss_pred --------------------------------CcccccccccccHHHHHHHHHHHHHHHhcCCChhhcccccccccCCCH
Confidence 455566677889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhh------------------hcCCChhhhhcCCceeeeccccCCCCCcCCCC-CCCccccccC
Q psy17184 161 AQVTNTIYALGREVF------------------LRDFSEEQLQAGKTIIGLQAGSNKGATQAGQN-IGAGRKIILG 217 (218)
Q Consensus 161 ~qV~~~l~~L~r~~~------------------~r~f~~~~l~~~~~~i~lq~G~nk~asq~g~~-~g~~r~i~~~ 217 (218)
.+|+.||++|++.+. +|+|++++|++++.+|||||||||||||+||+ ||++||++..
T Consensus 116 ~~V~vtL~aLa~~a~~~~~~~~~~~g~k~a~kq~r~f~~~~lk~g~~vi~LQmGtnk~asq~g~~~~G~~R~l~dp 191 (193)
T KOG2046|consen 116 AQVQVTLLALARKAQKKGLFSGPGIGPKLAEKQPREFTDEQLKAGQNVIGLQMGTNKGASQAGMTAYGTRRHLYDP 191 (193)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCcCCchhhcCcccCCHHHHhcccceEEEeeeccchhhcccccccccccccCCC
Confidence 999999999999997 78999999999999999999999999999999 9999999864
No 2
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=100.00 E-value=1.4e-35 Score=227.81 Aligned_cols=156 Identities=35% Similarity=0.470 Sum_probs=136.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHHhCCCCCCchhHHHHhhhhhHHHhhhhhccCCCccCCCChhhHHHHHHHHHHhhCCC
Q psy17184 7 VAAKIAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSIAAKRNPEQDKEAQAWIETVTGQK 86 (218)
Q Consensus 7 ~~~k~~~ky~~~~~~e~~~Wie~~~g~~i~~~~~~~~~LkdGvvLC~L~n~l~P~~i~kk~~~~~e~~i~~wie~~l~~~ 86 (218)
|..|..+++.++++.|+..|||+++++++.+.-+|.+.|+|||+||+..|...|
T Consensus 2 ~~~~~~~~~~~~~~kev~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~-------------------------- 55 (178)
T COG5199 2 VNTKNRCPGMDKQQKEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASP-------------------------- 55 (178)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCc--------------------------
Confidence 456788999999999999999999999997755677777777777776665544
Q ss_pred CCCccchHHhhhchhHHHHHHHhhCCCCcccccCCCCccccchhHHHHHHHHHHhCCCccCccccchhccccChhHHHHH
Q psy17184 87 FPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNT 166 (218)
Q Consensus 87 l~~~d~f~~~l~dG~iLc~L~n~l~pg~i~ki~~~~~~f~~~eNI~~Fl~~~~~~Gv~~~~lF~~~DL~e~kn~~qV~~~ 166 (218)
+. .+++.++++|.+||||+.|+.+.++++||+.+||+|.||||.||..||+.|
T Consensus 56 --------------------------~~-I~yKeSkmpFVQmenIs~Fin~~~k~~vpe~elFQT~DLFE~kd~~qV~~~ 108 (178)
T COG5199 56 --------------------------LD-IKYKESKMPFVQMENISSFINGLKKLRVPEYELFQTNDLFEAKDLRQVVIC 108 (178)
T ss_pred --------------------------cc-ceecccCCceeeHHHHHHHHHHHHHhCCCHHHHHHhhhHHhhcCHHHHHHH
Confidence 22 245577899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh------------------hcCC-ChhhhhcCCceeeeccccCCCCCcCCCC--CCCccccc
Q psy17184 167 IYALGREVF------------------LRDF-SEEQLQAGKTIIGLQAGSNKGATQAGQN--IGAGRKII 215 (218)
Q Consensus 167 l~~L~r~~~------------------~r~f-~~~~l~~~~~~i~lq~G~nk~asq~g~~--~g~~r~i~ 215 (218)
|++|+|+++ +|.| +.+++..++++|.||||+.++|+|++.. +|.+|+|.
T Consensus 109 l~slSRya~K~~~~~~p~lGP~LatKkprvfS~q~~l~~~~g~~~lqyGy~d~~~q~tek~a~~~rrD~~ 178 (178)
T COG5199 109 LYSLSRYAQKERMFSGPFLGPHLATKKPRVFSSQEVLDRSKGAIHLQYGYSDLSEQSTEKGASNVRRDLR 178 (178)
T ss_pred HHHHHHHHHHhcCCCCCccCccccccCCcccccHHHHhhcccceEeeecccccchhcccccccceecCCC
Confidence 999999998 7788 5777788999999999999999999977 99999874
No 3
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.74 E-value=5.8e-18 Score=125.36 Aligned_cols=102 Identities=32% Similarity=0.458 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHhhCCCCC-CccchHHhhhchhHHHHHHHhhCCCCcccccC-CCCccccchhHHHHHHHHHHhCCCccCc
Q psy17184 71 QDKEAQAWIETVTGQKFP-AGVLYEDAIKDGQILCHLINKLKPGSVAKINS-SGGQFKFMENINNFQKAIKDYGVADIDV 148 (218)
Q Consensus 71 ~e~~i~~wie~~l~~~l~-~~d~f~~~l~dG~iLc~L~n~l~pg~i~ki~~-~~~~f~~~eNI~~Fl~~~~~~Gv~~~~l 148 (218)
+++.+.+|++.+++...+ +..+|.+.|+||++||+|++.+.|+.++..+. +...|.+.+||..|+++|+++|+|.. +
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~-~ 80 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVV-N 80 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCcee-c
Confidence 467889999999987765 45579999999999999999999999987654 56789999999999999999999998 8
Q ss_pred cccchhccccChhHHHHHHHHHHhh
Q psy17184 149 FQTVDLYEKKDIAQVTNTIYALGRE 173 (218)
Q Consensus 149 F~~~DL~e~kn~~qV~~~l~~L~r~ 173 (218)
|+++||++++|..+|+.|+++|.++
T Consensus 81 ~~~~Dl~~~~n~~~vl~~l~~l~~~ 105 (107)
T cd00014 81 FDAEDLVEDGDEKLVLGLLWSLIRK 105 (107)
T ss_pred cCHHHHhhCCCceeeHHHHHHHHHh
Confidence 9999999999999999999999875
No 4
>KOG2128|consensus
Probab=99.73 E-value=4.8e-18 Score=166.87 Aligned_cols=114 Identities=30% Similarity=0.496 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhhCCCCCCccchHHhhhchhHHHHHHHhhCCCCccccc-CCCCccccchhHHHHHHHHHHhCCCccCccc
Q psy17184 72 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKIN-SSGGQFKFMENINNFQKAIKDYGVADIDVFQ 150 (218)
Q Consensus 72 e~~i~~wie~~l~~~l~~~d~f~~~l~dG~iLc~L~n~l~pg~i~ki~-~~~~~f~~~eNI~~Fl~~~~~~Gv~~~~lF~ 150 (218)
-++++.|||+|++..+|+..+|++.|++||+|++|.|.++|+.-..+. .....|++.+||..|+.++..+|+|++..|+
T Consensus 44 ~eE~k~W~e~cl~edL~pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~frHtdNi~q~~~~me~iglP~iF~~E 123 (1401)
T KOG2128|consen 44 VEEAKRWIEECLGEDLPPTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLHFRHTDNINQWLRAMESIGLPEIFYPE 123 (1401)
T ss_pred HHHHHHHHHHHhcccCCCchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCceeecchhHHHHHHHHhhcCCCcccccc
Confidence 468999999999999999889999999999999999999997655443 3456799999999999999999999999999
Q ss_pred cchhccccChhHHHHHHHHHHhhhh-------------hcCCChhhhhc
Q psy17184 151 TVDLYEKKDIAQVTNTIYALGREVF-------------LRDFSEEQLQA 186 (218)
Q Consensus 151 ~~DL~e~kn~~qV~~~l~~L~r~~~-------------~r~f~~~~l~~ 186 (218)
+.|+|++||++ |+.|||||+.... +..||+|++..
T Consensus 124 ~~Dvy~~kN~p-~i~cihaLs~~l~k~~~aP~l~~~~gk~~Ft~eei~~ 171 (1401)
T KOG2128|consen 124 TTDVYEGKNIP-VIYCIHALSLYLFKQGKAPPLQNLSGKVSFTEEEISN 171 (1401)
T ss_pred hhhhhcCCCCc-eeeHHHHHHHHHhcCCCCcccccccccCCccHHHHHH
Confidence 99999999999 9999999998886 66799998853
No 5
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.70 E-value=3.3e-17 Score=154.46 Aligned_cols=113 Identities=33% Similarity=0.535 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhCCCCCCccchHHhhhchhHHHHHHHhhCCCCcccccC-CCCccccchhHHHHHHHHHHhCCCccCcccc
Q psy17184 73 KEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINS-SGGQFKFMENINNFQKAIKDYGVADIDVFQT 151 (218)
Q Consensus 73 ~~i~~wie~~l~~~l~~~d~f~~~l~dG~iLc~L~n~l~pg~i~ki~~-~~~~f~~~eNI~~Fl~~~~~~Gv~~~~lF~~ 151 (218)
++++.|||+|++..+|. ..|++.|++||+|++|...++|+.+.+|-. .+.+|++++||+.|++....+|+|+..-|+.
T Consensus 47 ~EaK~WIee~~~~~l~~-~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~~LQfrHtdNIN~Fld~i~~vGlPe~FhFEl 125 (1054)
T COG5261 47 SEAKIWIEEVIEEALPE-LCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQFRHTDNINAFLDLIEHVGLPESFHFEL 125 (1054)
T ss_pred HHHHHHHHHHhccCCch-hhHHHHHhccchHHHHHHHhCCCceeEeeecccceeeccccHHHHHhHhhhcCCcceeeeeh
Confidence 57899999999999994 479999999999999999999999988765 4689999999999999999999999999999
Q ss_pred chhccccChhHHHHHHHHHHhhhh------------hcCCChhhhhc
Q psy17184 152 VDLYEKKDIAQVTNTIYALGREVF------------LRDFSEEQLQA 186 (218)
Q Consensus 152 ~DL~e~kn~~qV~~~l~~L~r~~~------------~r~f~~~~l~~ 186 (218)
.||||+||+++|+.|+|+|+.... ...||+|++.+
T Consensus 126 ~DlYekKN~pkViyciHaL~~~ls~~g~tpli~s~~~~sFt~edia~ 172 (1054)
T COG5261 126 QDLYEKKNIPKVIYCIHALISMLSWPGKTPLINSSGQISFTKEDIAA 172 (1054)
T ss_pred HhhhccCCcchhHHHHHHHHHHhcCCCCCcccccccCccccHHHHHH
Confidence 999999999999999999988875 45688988853
No 6
>PF00402 Calponin: Calponin family repeat; InterPro: IPR000557 Calponin [, ] is a thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin MgATPase activity. Calponin is a basic protein of approximately 34 Kd. Multiple isoforms are found in smooth muscles. Calponin contains three repeats of a well conserved 26 amino acid domain. Such a domain is also found in vertebrate smooth muscle protein (SM22 or transgelin), and a number of other proteins whose physiological role is not yet established, including Drosophila synchronous flight muscle protein SM20, Caenorhabditis elegans unc-87 protein [], rat neuronal protein NP25 [], and an Onchocerca volvulus antigen [].
Probab=99.69 E-value=6.4e-18 Score=92.56 Aligned_cols=25 Identities=56% Similarity=0.897 Sum_probs=24.0
Q ss_pred eeeccccCCCCCcCCCC-CCCccccc
Q psy17184 191 IGLQAGSNKGATQAGQN-IGAGRKII 215 (218)
Q Consensus 191 i~lq~G~nk~asq~g~~-~g~~r~i~ 215 (218)
|||||||||||||+||| ||.+|||+
T Consensus 1 i~LQ~GtNk~aSQ~Gmt~~G~~R~i~ 26 (26)
T PF00402_consen 1 IGLQMGTNKGASQSGMTAFGTPRHIY 26 (26)
T ss_pred CcccccccccccccCCccCCCCcccC
Confidence 79999999999999997 99999996
No 7
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.60 E-value=2.3e-15 Score=110.40 Aligned_cols=98 Identities=33% Similarity=0.477 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhhCCCC-CCccchHHhhhchhHHHHHHHhhCCCCccccc--CCCCccccchhHHHHHHHHHHhCCCccCc
Q psy17184 72 DKEAQAWIETVTGQKF-PAGVLYEDAIKDGQILCHLINKLKPGSVAKIN--SSGGQFKFMENINNFQKAIKDYGVADIDV 148 (218)
Q Consensus 72 e~~i~~wie~~l~~~l-~~~d~f~~~l~dG~iLc~L~n~l~pg~i~ki~--~~~~~f~~~eNI~~Fl~~~~~~Gv~~~~l 148 (218)
++.+..|++.+++... ++..+|.+.++||++||+|++.+.|+.++..+ .+...|.+.+|++.|+++|+++| +...+
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g-~~~~~ 80 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLG-GKLVL 80 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcC-Ceeec
Confidence 4678899999988653 33357999999999999999999999998654 34457899999999999999998 56679
Q ss_pred cccchhccc-cChhHHHHHHHHH
Q psy17184 149 FQTVDLYEK-KDIAQVTNTIYAL 170 (218)
Q Consensus 149 F~~~DL~e~-kn~~qV~~~l~~L 170 (218)
|++.||+++ +++.+|+.||+.+
T Consensus 81 ~~~~Dl~~~~k~~~~v~~~l~~~ 103 (103)
T smart00033 81 FEPEDLVEGNKLILGVIWTLILL 103 (103)
T ss_pred cCHHHHhhcchHHHHHHHHHHhC
Confidence 999999999 7999999998763
No 8
>KOG0532|consensus
Probab=99.54 E-value=6.8e-15 Score=135.26 Aligned_cols=106 Identities=30% Similarity=0.497 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHhhCCCCCCccchHHhhhchhHHHHHHHhhCCCCcccccCCC------CccccchhHHHHHHHHHHhCC
Q psy17184 70 EQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSG------GQFKFMENINNFQKAIKDYGV 143 (218)
Q Consensus 70 ~~e~~i~~wie~~l~~~l~~~d~f~~~l~dG~iLc~L~n~l~pg~i~ki~~~~------~~f~~~eNI~~Fl~~~~~~Gv 143 (218)
+.+...++-||..+...+|. +|..+|.|||+||+|+|.++|.+|+.|+.++ ..-+++.|+.+||++|+++||
T Consensus 576 eL~~QLRk~iEtRLk~sLp~--Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRkiGV 653 (722)
T KOG0532|consen 576 ELMLQLRKLIETRLKVSLPE--DLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRKIGV 653 (722)
T ss_pred HHHHHHHHHHHHHhcccCch--hHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHHcCC
Confidence 34566778888888888876 7999999999999999999999999998754 235899999999999999999
Q ss_pred CccCccccchhccc--cChhHHHHHHHHHHhhhhhc
Q psy17184 144 ADIDVFQTVDLYEK--KDIAQVTNTIYALGREVFLR 177 (218)
Q Consensus 144 ~~~~lF~~~DL~e~--kn~~qV~~~l~~L~r~~~~r 177 (218)
|+.+|+.+.|+... ++..+|..++..++..+++.
T Consensus 654 pEa~lCS~~Dilq~~~r~~rk~~~t~~~~~~~a~~~ 689 (722)
T KOG0532|consen 654 PEADLCSPMDILQKIERNPRKVARTVLTVGKKAQPQ 689 (722)
T ss_pred ChHhhcCHHHhhhhhcccchhHHHHHHhhccccCCC
Confidence 99999999999998 99999999999999988743
No 9
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.45 E-value=5.8e-13 Score=98.47 Aligned_cols=100 Identities=32% Similarity=0.480 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhCCC--CCCccchHHhhhchhHHHHHHHhhCCCCcc--cccCC-CCccccchhHHHHHHHHHH-hCCCc
Q psy17184 72 DKEAQAWIETVTGQK--FPAGVLYEDAIKDGQILCHLINKLKPGSVA--KINSS-GGQFKFMENINNFQKAIKD-YGVAD 145 (218)
Q Consensus 72 e~~i~~wie~~l~~~--l~~~d~f~~~l~dG~iLc~L~n~l~pg~i~--ki~~~-~~~f~~~eNI~~Fl~~~~~-~Gv~~ 145 (218)
|+.+.+|++..+... -.+..+|.+.|+||++||+|++.+.|+.++ +++.. +..|.+++|+..|+++|++ +|++.
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~ 80 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP 80 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 467899999998754 222236899999999999999999999874 44211 2678999999999999998 99998
Q ss_pred cCccccchhccccChhHHHHHHHHHHhh
Q psy17184 146 IDVFQTVDLYEKKDIAQVTNTIYALGRE 173 (218)
Q Consensus 146 ~~lF~~~DL~e~kn~~qV~~~l~~L~r~ 173 (218)
.. ++.||++.++...|+.+|..|.+.
T Consensus 81 ~~--~~~dl~~~~~~~~vl~~l~~l~~~ 106 (108)
T PF00307_consen 81 LL--SPEDLVEKGDEKSVLSFLWQLFRY 106 (108)
T ss_dssp TS---HHHHHSTT-HHHHHHHHHHHHHH
T ss_pred CC--CHHHHHHCcCHHHHHHHHHHHHHH
Confidence 55 999999999999999999998765
No 10
>KOG2996|consensus
Probab=99.39 E-value=7.4e-13 Score=121.42 Aligned_cols=110 Identities=26% Similarity=0.506 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhhCCCC------CCc--cchHHhhhchhHHHHHHHhhCCCCcc--cccC--CCCccccchhHHHHHHHHH
Q psy17184 72 DKEAQAWIETVTGQKF------PAG--VLYEDAIKDGQILCHLINKLKPGSVA--KINS--SGGQFKFMENINNFQKAIK 139 (218)
Q Consensus 72 e~~i~~wie~~l~~~l------~~~--d~f~~~l~dG~iLc~L~n~l~pg~i~--ki~~--~~~~f~~~eNI~~Fl~~~~ 139 (218)
.....+|+..|.-.+- +.. .+|...|+||++||+|+|.+.|++|. +|+- ...+|.|..||+-|+.+|.
T Consensus 4 WrqCarWLidckVLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~ 83 (865)
T KOG2996|consen 4 WRQCARWLIDCKVLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCC 83 (865)
T ss_pred HHHHHHHHhhccccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHH
Confidence 3456778876542211 111 25779999999999999999999985 5664 2478999999999999996
Q ss_pred -HhCCCccCccccchhccccChhHHHHHHHHHHhhhh-----hcCCCh
Q psy17184 140 -DYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVF-----LRDFSE 181 (218)
Q Consensus 140 -~~Gv~~~~lF~~~DL~e~kn~~qV~~~l~~L~r~~~-----~r~f~~ 181 (218)
.+|+...+||++.|||+-+++.+|+.||..||+... -|.|+.
T Consensus 84 ~~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS~t~ial~rGi~PFPt 131 (865)
T KOG2996|consen 84 EKFGLRDSELFEAFDLFDVRDFGKVIKTLSRLSHTPIALNRGIRPFPT 131 (865)
T ss_pred HHhCCchhhhcchhhhhhhhhHHHHHHHHHHhccChHHHhcCCCCCCC
Confidence 699999999999999999999999999999998765 455653
No 11
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.08 E-value=3.2e-10 Score=83.59 Aligned_cols=85 Identities=26% Similarity=0.408 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhCCCCC-CchhHHHHhhhhhHHHhhhhhccCCCccCCC-----ChhhHHHHHHHHHHhhCCCCCCccc
Q psy17184 19 QDKEAQAWIETVTGQKFP-AGVLYEDAIKDGQILCHLINKLKPGSIAAKR-----NPEQDKEAQAWIETVTGQKFPAGVL 92 (218)
Q Consensus 19 ~~~e~~~Wie~~~g~~i~-~~~~~~~~LkdGvvLC~L~n~l~P~~i~kk~-----~~~~e~~i~~wie~~l~~~l~~~d~ 92 (218)
.++++.+||+.+++...+ ...+|.+.|+||++||+|+|.+.|+.++... .....+++..+++.+...++|.. .
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~-~ 80 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVV-N 80 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCcee-c
Confidence 467899999999998865 3468999999999999999999999886654 22567899999999888888875 3
Q ss_pred hH--HhhhchhHHH
Q psy17184 93 YE--DAIKDGQILC 104 (218)
Q Consensus 93 f~--~~l~dG~iLc 104 (218)
|. |.+++|+.-+
T Consensus 81 ~~~~Dl~~~~n~~~ 94 (107)
T cd00014 81 FDAEDLVEDGDEKL 94 (107)
T ss_pred cCHHHHhhCCCcee
Confidence 43 6665665433
No 12
>KOG2128|consensus
Probab=99.03 E-value=8.3e-10 Score=109.70 Aligned_cols=131 Identities=20% Similarity=0.337 Sum_probs=94.9
Q ss_pred HHHHccCChhHHHHHHHHHHHHhCCCCCCchhHHHHhhhhhHHHhhhhhccCCCccCCCCh-----hhHHHHHHHHHHhh
Q psy17184 9 AKIAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSIAAKRNP-----EQDKEAQAWIETVT 83 (218)
Q Consensus 9 ~k~~~ky~~~~~~e~~~Wie~~~g~~i~~~~~~~~~LkdGvvLC~L~n~l~P~~i~kk~~~-----~~e~~i~~wie~~l 83 (218)
+.++.-|-= .=+|+++|||+++|+++||..+|+++|||||+|++|.|.+.|.....+|.. ..-+||.+|+.++-
T Consensus 34 ~~vaYeyLC-r~eE~k~W~e~cl~edL~pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~frHtdNi~q~~~~me 112 (1401)
T KOG2128|consen 34 QNVAYEYLC-RVEEAKRWIEECLGEDLPPTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLHFRHTDNINQWLRAME 112 (1401)
T ss_pred HhHHHHHHH-hHHHHHHHHHHHhcccCCCchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCceeecchhHHHHHHHHh
Confidence 334444433 246999999999999999888899999999999999999999877666643 56789999999999
Q ss_pred CCCCCCccchH--Hhhhch---hHHHHHHHhhC---CCCcccccC--CCCccccchhHHHHHHHHHHh
Q psy17184 84 GQKFPAGVLYE--DAIKDG---QILCHLINKLK---PGSVAKINS--SGGQFKFMENINNFQKAIKDY 141 (218)
Q Consensus 84 ~~~l~~~d~f~--~~l~dG---~iLc~L~n~l~---pg~i~ki~~--~~~~f~~~eNI~~Fl~~~~~~ 141 (218)
+.|+|+-.-|+ |.++.. ++.|-+|-.+. ||.-|.+.. .+..|.. |-|.+--+..+++
T Consensus 113 ~iglP~iF~~E~~Dvy~~kN~p~i~cihaLs~~l~k~~~aP~l~~~~gk~~Ft~-eei~~~k~~l~~~ 179 (1401)
T KOG2128|consen 113 SIGLPEIFYPETTDVYEGKNIPVIYCIHALSLYLFKQGKAPPLQNLSGKVSFTE-EEISNMKKELEKS 179 (1401)
T ss_pred hcCCCcccccchhhhhcCCCCceeeHHHHHHHHHhcCCCCcccccccccCCccH-HHHHHHHHHHHHH
Confidence 99999853222 555544 67888876653 666665543 2345544 5566655555544
No 13
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=98.90 E-value=5.4e-09 Score=76.29 Aligned_cols=89 Identities=21% Similarity=0.322 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhCCCCC-CchhHHHHhhhhhHHHhhhhhccCCCccCCCC------hhhHHHHHHHHHHhhCCCCCCccc
Q psy17184 20 DKEAQAWIETVTGQKFP-AGVLYEDAIKDGQILCHLINKLKPGSIAAKRN------PEQDKEAQAWIETVTGQKFPAGVL 92 (218)
Q Consensus 20 ~~e~~~Wie~~~g~~i~-~~~~~~~~LkdGvvLC~L~n~l~P~~i~kk~~------~~~e~~i~~wie~~l~~~l~~~d~ 92 (218)
+.++.+|++.+++...+ +..+|.+.|+||++||+|+|.+.|+.++.++. ....+++..+++.+...+. ....
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~-~~~~ 80 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGG-KLVL 80 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCC-eeec
Confidence 56899999999998643 23689999999999999999999999876441 2456788888887776653 2223
Q ss_pred hH--Hhhhc-hhHHHHHHHh
Q psy17184 93 YE--DAIKD-GQILCHLINK 109 (218)
Q Consensus 93 f~--~~l~d-G~iLc~L~n~ 109 (218)
|. |.++. ..+++.+.+.
T Consensus 81 ~~~~Dl~~~~k~~~~v~~~l 100 (103)
T smart00033 81 FEPEDLVEGNKLILGVIWTL 100 (103)
T ss_pred cCHHHHhhcchHHHHHHHHH
Confidence 43 44443 3555555543
No 14
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=98.78 E-value=2e-08 Score=95.90 Aligned_cols=102 Identities=25% Similarity=0.448 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHhhhhhHHHhhhhhccCCCccCCCCh-----hhHHHHHHHHHHhhCCCCCCccc--
Q psy17184 20 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSIAAKRNP-----EQDKEAQAWIETVTGQKFPAGVL-- 92 (218)
Q Consensus 20 ~~e~~~Wie~~~g~~i~~~~~~~~~LkdGvvLC~L~n~l~P~~i~kk~~~-----~~e~~i~~wie~~l~~~l~~~d~-- 92 (218)
-.|++.|||+++++.+|. ..|++.||+||+|.+|..+++|+++..++.. ..-+||..|+..+.+.|+|+..-
T Consensus 46 v~EaK~WIee~~~~~l~~-~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~~LQfrHtdNIN~Fld~i~~vGlPe~FhFE 124 (1054)
T COG5261 46 VSEAKIWIEEVIEEALPE-LCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQFRHTDNINAFLDLIEHVGLPESFHFE 124 (1054)
T ss_pred HHHHHHHHHHHhccCCch-hhHHHHHhccchHHHHHHHhCCCceeEeeecccceeeccccHHHHHhHhhhcCCcceeeee
Confidence 468999999999999984 5799999999999999999999999887743 45789999999999999998653
Q ss_pred hHHhhhch----hHHHHHHHhh---CCCCcccccCCC
Q psy17184 93 YEDAIKDG----QILCHLINKL---KPGSVAKINSSG 122 (218)
Q Consensus 93 f~~~l~dG----~iLc~L~n~l---~pg~i~ki~~~~ 122 (218)
++|+++.. |+.|-+|-.- .||.-|-|+.++
T Consensus 125 l~DlYekKN~pkViyciHaL~~~ls~~g~tpli~s~~ 161 (1054)
T COG5261 125 LQDLYEKKNIPKVIYCIHALISMLSWPGKTPLINSSG 161 (1054)
T ss_pred hHhhhccCCcchhHHHHHHHHHHhcCCCCCccccccc
Confidence 44888774 6888777543 477777666554
No 15
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=98.71 E-value=6.8e-08 Score=71.08 Aligned_cols=82 Identities=29% Similarity=0.487 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhCCC--CCCchhHHHHhhhhhHHHhhhhhccCCCccCC-CCh------hhHHHHHHHHHHhhC-CCCCC
Q psy17184 20 DKEAQAWIETVTGQK--FPAGVLYEDAIKDGQILCHLINKLKPGSIAAK-RNP------EQDKEAQAWIETVTG-QKFPA 89 (218)
Q Consensus 20 ~~e~~~Wie~~~g~~--i~~~~~~~~~LkdGvvLC~L~n~l~P~~i~kk-~~~------~~e~~i~~wie~~l~-~~l~~ 89 (218)
|.++..||..+++.. -....+|.+.|+||++||+|+|.+.|+.++.. .++ ...+++..+++.+.. .++|.
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~ 80 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP 80 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 568999999999765 11224689999999999999999999976322 222 567889999998877 78877
Q ss_pred ccchHHhhhchh
Q psy17184 90 GVLYEDAIKDGQ 101 (218)
Q Consensus 90 ~d~f~~~l~dG~ 101 (218)
...-.|.+.++.
T Consensus 81 ~~~~~dl~~~~~ 92 (108)
T PF00307_consen 81 LLSPEDLVEKGD 92 (108)
T ss_dssp TS-HHHHHSTT-
T ss_pred CCCHHHHHHCcC
Confidence 544445554443
No 16
>KOG0532|consensus
Probab=98.58 E-value=7.6e-08 Score=89.40 Aligned_cols=68 Identities=29% Similarity=0.474 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHhhhhhHHHhhhhhccCCCccCCCCh----------hhHHHHHHHHHHhhCCCCCCcc
Q psy17184 22 EAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSIAAKRNP----------EQDKEAQAWIETVTGQKFPAGV 91 (218)
Q Consensus 22 e~~~Wie~~~g~~i~~~~~~~~~LkdGvvLC~L~n~l~P~~i~kk~~~----------~~e~~i~~wie~~l~~~l~~~d 91 (218)
++++-||.-+..++| ++|..+|-||||||+|+|.+.|.+|+.|.-| .+..|+-.|+|+|-++|+|+.+
T Consensus 580 QLRk~iEtRLk~sLp--~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRkiGVpEa~ 657 (722)
T KOG0532|consen 580 QLRKLIETRLKVSLP--EDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRKIGVPEAD 657 (722)
T ss_pred HHHHHHHHHhcccCc--hhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHHcCCChHh
Confidence 444455555555654 5699999999999999999999999887633 5678999999999999999875
No 17
>KOG2046|consensus
Probab=98.41 E-value=3.1e-07 Score=74.64 Aligned_cols=46 Identities=46% Similarity=0.754 Sum_probs=41.1
Q ss_pred ccCCCChhhHHHHHHHHHHhhCCCCCCccchHHhhhchhHHHHHHH
Q psy17184 63 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLIN 108 (218)
Q Consensus 63 i~kk~~~~~e~~i~~wie~~l~~~l~~~d~f~~~l~dG~iLc~L~n 108 (218)
+.++|+++.+.++..||+.+...+.+..++|++.|+||++||+|+|
T Consensus 18 ~~~k~~~~~~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N 63 (193)
T KOG2046|consen 18 IESKYDDELEKELREWIENVVLTELPARGDFQDLLKDGVILCKLIN 63 (193)
T ss_pred hhcccCHHHHHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHH
Confidence 3567999999999999999877777766789999999999999999
No 18
>KOG0046|consensus
Probab=98.01 E-value=4.2e-06 Score=76.88 Aligned_cols=86 Identities=26% Similarity=0.330 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhCC--------CCCC-ccchHHhhhchhHHHHHHHhhCCCCcc--cccCC--CCccccchhHHHHHHHHH
Q psy17184 73 KEAQAWIETVTGQ--------KFPA-GVLYEDAIKDGQILCHLINKLKPGSVA--KINSS--GGQFKFMENINNFQKAIK 139 (218)
Q Consensus 73 ~~i~~wie~~l~~--------~l~~-~d~f~~~l~dG~iLc~L~n~l~pg~i~--ki~~~--~~~f~~~eNI~~Fl~~~~ 139 (218)
.....||...++- ++++ .++|.+..+||++||+++|.-.|++|. .||.. -.+|...||.+.-+..++
T Consensus 122 ~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~l~lnSAk 201 (627)
T KOG0046|consen 122 RAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFERNENLNLALNSAK 201 (627)
T ss_pred HHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhhhccchhhHHhhcc
Confidence 3567899988762 3433 346789999999999999999999996 45633 278999999999999999
Q ss_pred HhCCCccCccccchhccccC
Q psy17184 140 DYGVADIDVFQTVDLYEKKD 159 (218)
Q Consensus 140 ~~Gv~~~~lF~~~DL~e~kn 159 (218)
++|+....+ .+.||-|++.
T Consensus 202 AiGc~VvNI-ga~Dl~eGrp 220 (627)
T KOG0046|consen 202 AIGCTVVNI-GAQDLAEGRP 220 (627)
T ss_pred cccceEEec-CchhhhcCCc
Confidence 999998887 8999999984
No 19
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.91 E-value=8.4e-06 Score=58.40 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=56.6
Q ss_pred CCCccchHHhhhchhHHHHHHHhhCCCCcc--ccc--CCCCccccchhHHHHHHHHHH-hCCCccCccccchhcc
Q psy17184 87 FPAGVLYEDAIKDGQILCHLINKLKPGSVA--KIN--SSGGQFKFMENINNFQKAIKD-YGVADIDVFQTVDLYE 156 (218)
Q Consensus 87 l~~~d~f~~~l~dG~iLc~L~n~l~pg~i~--ki~--~~~~~f~~~eNI~~Fl~~~~~-~Gv~~~~lF~~~DL~e 156 (218)
.++-++|...+.||.+||.|++.+.|+.++ .|. +..+.+....|+..|.++|.+ +|.+...+ +++||..
T Consensus 10 ~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l-~~edl~~ 83 (85)
T PF11971_consen 10 FPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHL-EPEDLLY 83 (85)
T ss_pred CcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcC-CHHHHhc
Confidence 344457889999999999999999999986 344 455678899999999999975 88888776 8888764
No 20
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=97.80 E-value=5.5e-05 Score=54.42 Aligned_cols=78 Identities=24% Similarity=0.394 Sum_probs=60.7
Q ss_pred chHHhhhchhHHHHHHHhhCCCCcccccC--CCCccccchhHHHHHHHHH-HhCCCccCccccchhccc--cChhHHHHH
Q psy17184 92 LYEDAIKDGQILCHLINKLKPGSVAKINS--SGGQFKFMENINNFQKAIK-DYGVADIDVFQTVDLYEK--KDIAQVTNT 166 (218)
Q Consensus 92 ~f~~~l~dG~iLc~L~n~l~pg~i~ki~~--~~~~f~~~eNI~~Fl~~~~-~~Gv~~~~lF~~~DL~e~--kn~~qV~~~ 166 (218)
.+.+.++-|.-||.|-|.+.|...-.++. +...-.+...|-.|+.+|+ ++|+|..++|...|||.+ .++-+|+.+
T Consensus 5 ~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~dT~gfvKVi~~ 84 (89)
T PF06395_consen 5 QLWKLFRQGYPLCVLFNALQPEEPLPVDPVSSDDLKVCKKAIYKFIQACKQELGFPDEELFTISDLYGDDTNGFVKVIKV 84 (89)
T ss_pred HHHHHHhCcCcHHHHHHccCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCccceeeeeccccCCCcchhhHHHH
Confidence 35688999999999999999975434432 2233456678999999996 699999999999999986 356677776
Q ss_pred HHH
Q psy17184 167 IYA 169 (218)
Q Consensus 167 l~~ 169 (218)
+..
T Consensus 85 V~~ 87 (89)
T PF06395_consen 85 VNR 87 (89)
T ss_pred HHh
Confidence 543
No 21
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=97.54 E-value=0.00013 Score=57.12 Aligned_cols=43 Identities=40% Similarity=0.599 Sum_probs=37.2
Q ss_pred CCChhhHHHHHHHHHHhhCCCCCCccchHHhhhchhHHHHHHH
Q psy17184 66 KRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLIN 108 (218)
Q Consensus 66 k~~~~~e~~i~~wie~~l~~~l~~~d~f~~~l~dG~iLc~L~n 108 (218)
...++++.++.-||+.+++..+.+.-+|.+.|+||++||++.|
T Consensus 9 ~~~~~~~kev~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ 51 (178)
T COG5199 9 PGMDKQQKEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILN 51 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHh
Confidence 3456889999999999999999765569999999999999665
No 22
>KOG2996|consensus
Probab=97.48 E-value=0.00032 Score=65.56 Aligned_cols=74 Identities=23% Similarity=0.443 Sum_probs=53.9
Q ss_pred HHHHHHHHHH--h--CCCC--CCc--hhHHHHhhhhhHHHhhhhhccCCCccCCC---Ch-----hhHHHHHHHHHHhhC
Q psy17184 21 KEAQAWIETV--T--GQKF--PAG--VLYEDAIKDGQILCHLINKLKPGSIAAKR---NP-----EQDKEAQAWIETVTG 84 (218)
Q Consensus 21 ~e~~~Wie~~--~--g~~i--~~~--~~~~~~LkdGvvLC~L~n~l~P~~i~kk~---~~-----~~e~~i~~wie~~l~ 84 (218)
.++..|+..+ + ...+ +.. .+|..+|||||.||.|+|.|.|++|.-+. .| -+-.||+.|+..|..
T Consensus 5 rqCarWLidckVLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~ 84 (865)
T KOG2996|consen 5 RQCARWLIDCKVLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCE 84 (865)
T ss_pred HHHHHHHhhccccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHH
Confidence 4788999855 3 2222 111 47999999999999999999999985432 22 357899999998754
Q ss_pred -CCCCCccchH
Q psy17184 85 -QKFPAGVLYE 94 (218)
Q Consensus 85 -~~l~~~d~f~ 94 (218)
.++...++|.
T Consensus 85 ~Fglr~seLF~ 95 (865)
T KOG2996|consen 85 KFGLRDSELFE 95 (865)
T ss_pred HhCCchhhhcc
Confidence 6777766665
No 23
>KOG0046|consensus
Probab=96.88 E-value=0.00079 Score=62.28 Aligned_cols=49 Identities=29% Similarity=0.371 Sum_probs=40.1
Q ss_pred CChhHHHHHHHHHHHHhCC--------CCCCc-hhHHHHhhhhhHHHhhhhhccCCCc
Q psy17184 15 RNPEQDKEAQAWIETVTGQ--------KFPAG-VLYEDAIKDGQILCHLINKLKPGSI 63 (218)
Q Consensus 15 y~~~~~~e~~~Wie~~~g~--------~i~~~-~~~~~~LkdGvvLC~L~n~l~P~~i 63 (218)
|+.+...+-..||...++- ++++. .+|.+..+|||+||||||.--|+.|
T Consensus 116 i~eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTI 173 (627)
T KOG0046|consen 116 INEEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTI 173 (627)
T ss_pred ecHHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCch
Confidence 5566667889999999872 44443 5799999999999999999999887
No 24
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=93.75 E-value=0.026 Score=40.38 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=25.0
Q ss_pred chhHHHHhhhhhHHHhhhhhccCCCccC
Q psy17184 38 GVLYEDAIKDGQILCHLINKLKPGSIAA 65 (218)
Q Consensus 38 ~~~~~~~LkdGvvLC~L~n~l~P~~i~k 65 (218)
-++|...++||++||.|++...|..++.
T Consensus 13 v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~ 40 (85)
T PF11971_consen 13 VEDLTQDLSDGRALCALIHFYCPQLLPL 40 (85)
T ss_pred hhhhhhhhccHHHHHHHHHHhCcceecH
Confidence 3679999999999999999999988853
No 25
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=92.23 E-value=0.28 Score=35.34 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=43.2
Q ss_pred hHHHHhhhhhHHHhhhhhccCCCccCC--CCh----hhHHHHHHHHHHhh-CCCCCCccchH--Hhhhc
Q psy17184 40 LYEDAIKDGQILCHLINKLKPGSIAAK--RNP----EQDKEAQAWIETVT-GQKFPAGVLYE--DAIKD 99 (218)
Q Consensus 40 ~~~~~LkdGvvLC~L~n~l~P~~i~kk--~~~----~~e~~i~~wie~~l-~~~l~~~d~f~--~~l~d 99 (218)
.+-.-+|.|.-||-|.|.++|..--.+ .+. .+...+..||.+|. ..++|+.+.|. |++.+
T Consensus 5 ~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~ 73 (89)
T PF06395_consen 5 QLWKLFRQGYPLCVLFNALQPEEPLPVDPVSSDDLKVCKKAIYKFIQACKQELGFPDEELFTISDLYGD 73 (89)
T ss_pred HHHHHHhCcCcHHHHHHccCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCccceeeeeccccC
Confidence 456778999999999999999643333 111 34567889999985 47888887775 55443
No 26
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=91.54 E-value=0.24 Score=45.90 Aligned_cols=71 Identities=24% Similarity=0.346 Sum_probs=51.8
Q ss_pred HHHHHhhCCCCCCcc--chHHhhhchhHHHHHHHhhCCCCcc-cccC------CCCccccchhHHHHHHHHHHhCCCccC
Q psy17184 77 AWIETVTGQKFPAGV--LYEDAIKDGQILCHLINKLKPGSVA-KINS------SGGQFKFMENINNFQKAIKDYGVADID 147 (218)
Q Consensus 77 ~wie~~l~~~l~~~d--~f~~~l~dG~iLc~L~n~l~pg~i~-ki~~------~~~~f~~~eNI~~Fl~~~~~~Gv~~~~ 147 (218)
-|....++--.|+.| +|.+..+||-++|+|+|-..|.++. .+.. .-..|.+.||-+.|+...+.+|+-++.
T Consensus 132 lwc~~~t~~y~p~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~qkknk~~n~~qafe~a~k~Igi~rli~vediv 211 (612)
T COG5069 132 LWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGIARLIGVEDIV 211 (612)
T ss_pred eeccccccCcCCCccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchhhcccchhHHHHHHHHHHhhchHhhcCcceee
Confidence 444444444456554 5779999999999999999999663 3322 225689999999999999999975433
No 27
>KOG0517|consensus
Probab=90.95 E-value=0.5 Score=50.08 Aligned_cols=85 Identities=18% Similarity=0.283 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhhC-CCCCCccchHHhhhchhHHHHHHHhhCCCCcccccCCCCccccchhHHHHHHHHHHhCCCccCcc
Q psy17184 71 QDKEAQAWIETVTG-QKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKDYGVADIDVF 149 (218)
Q Consensus 71 ~e~~i~~wie~~l~-~~l~~~d~f~~~l~dG~iLc~L~n~l~pg~i~ki~~~~~~f~~~eNI~~Fl~~~~~~Gv~~~~lF 149 (218)
+...+.+|+...+. .++.-.| +..-|+||.+|-+|+..|.-..+||-+...+..++.||++.-|++.+.--|+-..+
T Consensus 49 QKKTFTKWvNShL~rv~c~I~D-Ly~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENvdKaLqFLkeqkVhLEni- 126 (2473)
T KOG0517|consen 49 QKKTFTKWVNSHLARVSCRIGD-LYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENVDKALQFLKEQKVHLENI- 126 (2473)
T ss_pred HHHhHHHHHHHHHHHhcchhHH-HHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhhHHHHHHHHhcccccccC-
Confidence 45567899999875 3333343 55668999999999999987788887777888999999999999999866665555
Q ss_pred ccchhccc
Q psy17184 150 QTVDLYEK 157 (218)
Q Consensus 150 ~~~DL~e~ 157 (218)
-+.|+.+|
T Consensus 127 GshDIVDG 134 (2473)
T KOG0517|consen 127 GSHDIVDG 134 (2473)
T ss_pred CcccccCC
Confidence 67788776
No 28
>KOG3631|consensus
Probab=78.82 E-value=9.5 Score=33.18 Aligned_cols=102 Identities=22% Similarity=0.312 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHhhC-CCCCCccchHHhhhchhHHHHHHHhhCCCCc--ccccCCCCccccchhHHHHHHHH-HHhCCCcc
Q psy17184 71 QDKEAQAWIETVTG-QKFPAGVLYEDAIKDGQILCHLINKLKPGSV--AKINSSGGQFKFMENINNFQKAI-KDYGVADI 146 (218)
Q Consensus 71 ~e~~i~~wie~~l~-~~l~~~d~f~~~l~dG~iLc~L~n~l~pg~i--~ki~~~~~~f~~~eNI~~Fl~~~-~~~Gv~~~ 146 (218)
...-+..||.+++- ..|-- ..+++-+-||.||.+|..++.--.+ +.+..+ .--+..-+.--+++. +.++.|..
T Consensus 91 l~kvLi~WiN~~L~~erIvV-r~LeEDlfDGqilqkL~ekL~~~klev~evtqs--e~~QkqKLq~Vleavnr~L~~~~~ 167 (365)
T KOG3631|consen 91 LVKVLIDWINDVLVPERIVV-RSLEEDLFDGQILQKLFEKLAALKLEVAEVTQS--EIGQKQKLQTVLEAVNRSLQLPEW 167 (365)
T ss_pred HHHHHHHHHHHhhcchhhhH-HhhHHhhhhhHHHHHHHHHHHhhhccchhhhhh--hHHHHHHHHHHHHHHHHHhcCchh
Confidence 34566799998764 22221 2477778899999999998853221 222221 223344566677777 46899987
Q ss_pred CccccchhccccChhHHHHHHHHHHhhhh
Q psy17184 147 DVFQTVDLYEKKDIAQVTNTIYALGREVF 175 (218)
Q Consensus 147 ~lF~~~DL~e~kn~~qV~~~l~~L~r~~~ 175 (218)
..==..|..-+|++...+.-|.+|+..-+
T Consensus 168 q~kWsvdsIh~Kdl~ailhLLVaLa~~fr 196 (365)
T KOG3631|consen 168 QAKWSVDSIHNKDLVAILHLLVALAKHFR 196 (365)
T ss_pred hhccchhhhccchHHHHHHHHHHHHHHcC
Confidence 77667799999999999999999988765
No 29
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=78.73 E-value=3.1 Score=33.09 Aligned_cols=91 Identities=13% Similarity=0.277 Sum_probs=51.4
Q ss_pred HHHHHHHhhCCCCCCccchHHhhhchhHHHHHHHhhCCCCccc--ccCCCCccccchhHHHH-HHHHHHhCCCccCcccc
Q psy17184 75 AQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAK--INSSGGQFKFMENINNF-QKAIKDYGVADIDVFQT 151 (218)
Q Consensus 75 i~~wie~~l~~~l~~~d~f~~~l~dG~iLc~L~n~l~pg~i~k--i~~~~~~f~~~eNI~~F-l~~~~~~Gv~~~~lF~~ 151 (218)
+.+||.. +....++. .+...+.||.+++.++..+.|..|.- .......-....|=..| ...++++|++ |..
T Consensus 1 l~~WL~~-l~ls~~~~-n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~~Ln~kvl~kl~~~----l~~ 74 (158)
T PF06294_consen 1 LLKWLQS-LDLSRPPK-NIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWETLNEKVLKKLGIK----LDK 74 (158)
T ss_dssp HHHHHHH-S--S--SS--HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHHHHHHHTTGGGT--------H
T ss_pred ChHHHhc-CCCCCCCC-chHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHHHHHHHHHHHcCCC----CCH
Confidence 4579988 44444443 57888999999999999999987652 22222334566788878 7777888886 333
Q ss_pred chhc---cc--cChhHHHHHHHHHH
Q psy17184 152 VDLY---EK--KDIAQVTNTIYALG 171 (218)
Q Consensus 152 ~DL~---e~--kn~~qV~~~l~~L~ 171 (218)
.++. .+ .-+..++..|+..-
T Consensus 75 ~~i~~i~~~~~Gaae~lL~~L~~~l 99 (158)
T PF06294_consen 75 EDIEGIINCKPGAAESLLYQLYTKL 99 (158)
T ss_dssp HHHHHHHTT-TTTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3333 22 23456666666554
No 30
>KOG0517|consensus
Probab=71.11 E-value=65 Score=35.35 Aligned_cols=131 Identities=19% Similarity=0.344 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhC---CCCCCchhHHHHhhhhhHHHhhhhhccCCCccCCC----ChhhH---HHHHHHHHH-------
Q psy17184 19 QDKEAQAWIETVTG---QKFPAGVLYEDAIKDGQILCHLINKLKPGSIAAKR----NPEQD---KEAQAWIET------- 81 (218)
Q Consensus 19 ~~~e~~~Wie~~~g---~~i~~~~~~~~~LkdGvvLC~L~n~l~P~~i~kk~----~~~~e---~~i~~wie~------- 81 (218)
.+.-.-.|+.+.++ ..| .|+..-|+||+.|-||...|.-...++-. ...+. +.+.+|+..
T Consensus 49 QKKTFTKWvNShL~rv~c~I---~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENvdKaLqFLkeqkVhLEn 125 (2473)
T KOG0517|consen 49 QKKTFTKWVNSHLARVSCRI---GDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENVDKALQFLKEQKVHLEN 125 (2473)
T ss_pred HHHhHHHHHHHHHHHhcchh---HHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhhHHHHHHHHhccccccc
Confidence 34456679999885 333 46889999999999999888533332211 11222 223344442
Q ss_pred -------------h---------------------------------------hCCCCCCc--cchHHhhhchhHHHHHH
Q psy17184 82 -------------V---------------------------------------TGQKFPAG--VLYEDAIKDGQILCHLI 107 (218)
Q Consensus 82 -------------~---------------------------------------l~~~l~~~--d~f~~~l~dG~iLc~L~ 107 (218)
+ ..-|.|.. .+|-...+||-..=-|+
T Consensus 126 iGshDIVDGN~rL~LGLIWTIILRFQIq~I~ie~edn~E~rSAKDALLLWCQmKTAGYpnVNI~nFTtSWRdGLaFNALI 205 (2473)
T KOG0517|consen 126 IGSHDIVDGNHRLILGLIWTIILRFQIQDISIETEDNRETRSAKDALLLWCQMKTAGYPNVNITNFTTSWRDGLAFNALI 205 (2473)
T ss_pred CCcccccCCcchhhHHHHHHHHHheeeeeeEeecccchhhhhHHHHHHHHHHhhccCCCCcccccCccchhcchhHHHHH
Confidence 0 00122221 24666677777776677
Q ss_pred HhhCCCCcc--cccCCCCccccchhHHH-HHHHHHHhCCCccCccccchhcccc
Q psy17184 108 NKLKPGSVA--KINSSGGQFKFMENINN-FQKAIKDYGVADIDVFQTVDLYEKK 158 (218)
Q Consensus 108 n~l~pg~i~--ki~~~~~~f~~~eNI~~-Fl~~~~~~Gv~~~~lF~~~DL~e~k 158 (218)
.+-.|..+. +++.+ .+..|+.+ |.-+-..+|++. |.++.|..-..
T Consensus 206 HkHRPDLvDf~~L~k~----na~~NL~~AFdvAE~~LGia~--LLDpEDV~v~~ 253 (2473)
T KOG0517|consen 206 HKHRPDLVDFDKLKKS----NALYNLQHAFDVAEQELGIAK--LLDPEDVNVEQ 253 (2473)
T ss_pred HhcCcchhhhcccCCC----chhhHHHHHHHHHHHHcCchh--cCCHhhcCccC
Confidence 666676654 33322 34467755 555556899985 78888886543
No 31
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=54.89 E-value=36 Score=33.48 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=29.0
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCchhHHHHhhhhhHHHhhhhhccCCCc
Q psy17184 16 NPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSI 63 (218)
Q Consensus 16 ~~~~~~e~~~Wie~~~g~~i~~~~~~~~~LkdGvvLC~L~n~l~P~~i 63 (218)
.+++..-++.||... +. +.+..-..-|-|||+|..++..|.|...
T Consensus 5 ~~~l~~~Lv~Wv~tf-~~--~~~~~~~~dL~DGv~L~evL~qIDp~~F 49 (713)
T PF05622_consen 5 KMELCDSLVTWVQTF-NL--SAPCSSYEDLSDGVALAEVLHQIDPEYF 49 (713)
T ss_dssp --HHHHHHHHHHTT------SS---SHHHHTTSHHHHHHHHHH-TTTS
T ss_pred hhhHHHHHHHHHHHC-CC--CCCcCCHHHccchHHHHHHHHHhCcccc
Confidence 456677899999874 32 2222235678999999999999999654
No 32
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=54.79 E-value=11 Score=25.60 Aligned_cols=37 Identities=24% Similarity=0.558 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhC-CCCCCc-cchHHhhhchhHHHHHHH
Q psy17184 72 DKEAQAWIETVTG-QKFPAG-VLYEDAIKDGQILCHLIN 108 (218)
Q Consensus 72 e~~i~~wie~~l~-~~l~~~-d~f~~~l~dG~iLc~L~n 108 (218)
.+.|..|+..+.. ++++.. -++...-.||.-||.+..
T Consensus 7 ~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~ 45 (68)
T cd08757 7 KNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTE 45 (68)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCH
Confidence 5689999997654 777754 246666899999998763
No 33
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=54.09 E-value=37 Score=28.82 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=42.4
Q ss_pred hccCCCccCCCChhhHH-HHHHHHHHhhCCCCCCccchHHhhhchhHHHHHHHhhCCCCcccccCCCCccccchhHHHHH
Q psy17184 57 KLKPGSIAAKRNPEQDK-EAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQ 135 (218)
Q Consensus 57 ~l~P~~i~kk~~~~~e~-~i~~wie~~l~~~l~~~d~f~~~l~dG~iLc~L~n~l~pg~i~ki~~~~~~f~~~eNI~~Fl 135 (218)
.+.|..... .+....+ .-+.||.++..-+|.+. +.++-|.-.|+-. ..+|.. ++..|+
T Consensus 49 aifPa~~a~-~~~~~~~~aKr~Wi~~f~engI~t~----eQv~~Gm~~aR~~--------------~spF~P--S~GqFI 107 (233)
T PF06992_consen 49 AIFPAWRAN-PDQEELNEAKRQWIKAFAENGITTM----EQVRAGMRRARAS--------------ESPFWP--SPGQFI 107 (233)
T ss_pred HhCchhccC-CCHHHHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhc--------------CCCCCC--ChhHHH
Confidence 345665433 3333333 34689999998888663 4456666555421 234433 689999
Q ss_pred HHHH-----HhCCCcc
Q psy17184 136 KAIK-----DYGVADI 146 (218)
Q Consensus 136 ~~~~-----~~Gv~~~ 146 (218)
.||+ .+|+|..
T Consensus 108 ~WCk~~~~~~lGLP~~ 123 (233)
T PF06992_consen 108 AWCKPGDYEALGLPSV 123 (233)
T ss_pred HHHhcchHHhcCCCCH
Confidence 9998 4688765
No 34
>PF03494 Beta-APP: Beta-amyloid peptide (beta-APP); InterPro: IPR013803 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents the amyloid-beta peptide (A-beta), which originates as a breakdown product from the cleavage of amyloid-beta precursor protein (APP, or A4), an integral, glycosylated membrane brain protein. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 2LMQ_F 3JTI_B 2LMO_B 3MOQ_D 2LNQ_E 2LMP_G 2BEG_B 1AMC_A 3OW9_B 3U0T_F ....
Probab=52.07 E-value=6.3 Score=23.33 Aligned_cols=10 Identities=60% Similarity=0.747 Sum_probs=8.0
Q ss_pred eccccCCCCC
Q psy17184 193 LQAGSNKGAT 202 (218)
Q Consensus 193 lq~G~nk~as 202 (218)
=.||+||||-
T Consensus 19 EDvgSNKGAI 28 (39)
T PF03494_consen 19 EDVGSNKGAI 28 (39)
T ss_dssp CCCSSSSSEE
T ss_pred hHcCCCCceE
Confidence 3689999984
No 35
>KOG3000|consensus
Probab=50.88 E-value=36 Score=29.91 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhCCCCCCccchHHhhhchhHHHHHHHhhCCCCcc
Q psy17184 72 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVA 116 (218)
Q Consensus 72 e~~i~~wie~~l~~~l~~~d~f~~~l~dG~iLc~L~n~l~pg~i~ 116 (218)
..++..|+..++...+.. .+-+..|-..|.++..+.|+.++
T Consensus 17 R~E~laW~N~~l~~n~~k----IEe~~tGaaycqlmd~l~p~~i~ 57 (295)
T KOG3000|consen 17 RLEILAWINDLLQLNLTK----IEELCTGAAYCQLMDMLFPPDIP 57 (295)
T ss_pred hHHHHHHHHhhhhcchhh----hhhhcccchhhhhhhhccCCccc
Confidence 457899999999876543 24577899999999999999876
No 36
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=47.44 E-value=24 Score=27.98 Aligned_cols=54 Identities=11% Similarity=0.351 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCCCchhHHHHhhhhhHHHhhhhhccCCCcc-CCCCh--hhHHHHHHH
Q psy17184 23 AQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSIA-AKRNP--EQDKEAQAW 78 (218)
Q Consensus 23 ~~~Wie~~~g~~i~~~~~~~~~LkdGvvLC~L~n~l~P~~i~-kk~~~--~~e~~i~~w 78 (218)
+..||.. +..++++ .++..-+.||+.+++++....|..|. --|.+ .....+.+|
T Consensus 1 l~~WL~~-l~ls~~~-~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW 57 (158)
T PF06294_consen 1 LLKWLQS-LDLSRPP-KNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNW 57 (158)
T ss_dssp HHHHHHH-S--S--S-S-HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHH
T ss_pred ChHHHhc-CCCCCCC-CchHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHH
Confidence 4579988 5555444 46888899999999999999997753 22332 223445556
No 37
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=46.53 E-value=20 Score=24.39 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhh-CCCCCCccchHHhhhchhHHHHHHH
Q psy17184 72 DKEAQAWIETVT-GQKFPAGVLYEDAIKDGQILCHLIN 108 (218)
Q Consensus 72 e~~i~~wie~~l-~~~l~~~d~f~~~l~dG~iLc~L~n 108 (218)
.+.|..|++-+. .+++++.+ +...-.||.-||.+..
T Consensus 8 ~~~V~~WL~wa~~ef~L~~i~-~~~F~mnGk~LC~ls~ 44 (68)
T cd08535 8 RDDVLQWLRWAENEFSLPPID-SNTFEMNGKALCLLTK 44 (68)
T ss_pred HHHHHHHHHHHHHhcCCCCCC-hhccCCCHHHHhcCCH
Confidence 568999999754 47787653 6666799999998763
No 38
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=45.21 E-value=23 Score=23.74 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhC-CCCCCccchHHhhhchhHHHHHHH
Q psy17184 72 DKEAQAWIETVTG-QKFPAGVLYEDAIKDGQILCHLIN 108 (218)
Q Consensus 72 e~~i~~wie~~l~-~~l~~~d~f~~~l~dG~iLc~L~n 108 (218)
.+.|..||..+.. +++++. ++...-.+|.-||.+..
T Consensus 7 ~~~V~~Wl~w~~~~f~L~~~-~~~~F~m~G~~Lc~ls~ 43 (66)
T cd08203 7 KEHVLQWLEWAVKEFSLPPI-DFSKFNMNGKELCLLTK 43 (66)
T ss_pred HHHHHHHHHHHHHhcCCCCC-ChhhcCCCHHHHHhCCH
Confidence 5689999998664 778763 45566889999998753
No 39
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=44.41 E-value=22 Score=24.65 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhh-CCCCCCccchHHh-hhchhHHHHHH
Q psy17184 71 QDKEAQAWIETVT-GQKFPAGVLYEDA-IKDGQILCHLI 107 (218)
Q Consensus 71 ~e~~i~~wie~~l-~~~l~~~d~f~~~-l~dG~iLc~L~ 107 (218)
..+.|..|++-+. .+++++. ++... -.+|.-||.+-
T Consensus 9 t~~~V~~WL~Wa~~ef~L~~i-~~~~F~~m~Gk~LC~lt 46 (75)
T cd08531 9 TREHVRQWLEWAVKEYGLQDV-DVSRFQNIDGKELCKMT 46 (75)
T ss_pred CHHHHHHHHHHHHHHcCCCCC-ChhhccCCChHHHHcCC
Confidence 3678999999765 4788654 35565 78899999865
No 40
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=44.04 E-value=19 Score=25.00 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhh-CCCCCCccchHHhhhchhHHHHHHH
Q psy17184 71 QDKEAQAWIETVT-GQKFPAGVLYEDAIKDGQILCHLIN 108 (218)
Q Consensus 71 ~e~~i~~wie~~l-~~~l~~~d~f~~~l~dG~iLc~L~n 108 (218)
..+.|..|++-+. .+++++ ++...-.||.-||.+..
T Consensus 14 s~~~V~~WL~w~~~ef~L~~--~~~~F~mnG~~LC~ls~ 50 (76)
T cd08532 14 SPANVQKWLLWTEHQYRLPP--PPRCFELNGKDLCALSE 50 (76)
T ss_pred CHHHHHHHHHHHHHHhCCCC--chhcCCCCHHHHHcCCH
Confidence 3678999999765 478887 46677899999998753
No 41
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=40.88 E-value=23 Score=23.86 Aligned_cols=36 Identities=14% Similarity=0.340 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhC-CCCCCccchHHhhhchhHHHHHHH
Q psy17184 72 DKEAQAWIETVTG-QKFPAGVLYEDAIKDGQILCHLIN 108 (218)
Q Consensus 72 e~~i~~wie~~l~-~~l~~~d~f~~~l~dG~iLc~L~n 108 (218)
.+.|..|++-+.. +++++. ++...-++|.-||.+-.
T Consensus 7 ~~~V~~WL~w~~~ef~L~~~-~~~~F~m~Gk~LC~ls~ 43 (66)
T cd08536 7 REHVRTWLRWVSARYQLEVV-DLDKFLMNGKGLCLMSL 43 (66)
T ss_pred HHHHHHHHHHHHHHhCCCCC-CccccCCCHHHHHcCCH
Confidence 5689999997654 777764 34445689999998753
No 42
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=36.35 E-value=34 Score=23.96 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhh-CCCCCCc-cchHHhhhchhHHHHHHH
Q psy17184 72 DKEAQAWIETVT-GQKFPAG-VLYEDAIKDGQILCHLIN 108 (218)
Q Consensus 72 e~~i~~wie~~l-~~~l~~~-d~f~~~l~dG~iLc~L~n 108 (218)
...|..||.-+. .+++++. .+|.+.-.||.-||.+..
T Consensus 12 ~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~ 50 (78)
T cd08538 12 KRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQ 50 (78)
T ss_pred HHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCH
Confidence 568999999755 4788764 367788999999998763
No 43
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=36.30 E-value=32 Score=24.15 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhhC-CCCCCccchHHhhhchhHHHHHHH
Q psy17184 71 QDKEAQAWIETVTG-QKFPAGVLYEDAIKDGQILCHLIN 108 (218)
Q Consensus 71 ~e~~i~~wie~~l~-~~l~~~d~f~~~l~dG~iLc~L~n 108 (218)
..+.|..||+-+.. +++++. +|...-.+|.-||.+..
T Consensus 21 t~~~V~~Wl~w~~~ef~L~~~-~~~~f~m~G~~Lc~ls~ 58 (82)
T smart00251 21 TEDHVLEWLEWAVKEFSLSPI-DFSKFDMSGKELCSMSK 58 (82)
T ss_pred CHHHHHHHHHHHHHhcCCCCC-CcccCCCCHHHHHcCCH
Confidence 36789999998654 677654 35566789999998753
No 44
>KOG0035|consensus
Probab=36.05 E-value=28 Score=35.08 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=57.2
Q ss_pred HHHHHhhC-CCCCCccchHHhhhchhHHHHHHHhhCCCCcccccCCCCccccchhHHHHHHHHHH-hCCCccCccccchh
Q psy17184 77 AWIETVTG-QKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKD-YGVADIDVFQTVDL 154 (218)
Q Consensus 77 ~wie~~l~-~~l~~~d~f~~~l~dG~iLc~L~n~l~pg~i~ki~~~~~~f~~~eNI~~Fl~~~~~-~Gv~~~~lF~~~DL 154 (218)
-|.+..+. +..+.-..|....+||..+|.+++...|..++.+.... +=..++|++.-...+.+ +|+| .+.++.|+
T Consensus 149 Lwcq~~Ta~y~~v~v~nF~~sw~~gl~f~A~ih~~Rpdli~~y~~lt-~~~~~~n~~~A~~iAek~l~i~--r~ld~ed~ 225 (890)
T KOG0035|consen 149 LWCQRKTAPYSNVNVQNFHTSWKDGLAFCALIHRHRPDLIDQYDKLT-KQDPVENLNLAFDIAEKFLGIP--RLLDAEDI 225 (890)
T ss_pred hheecccCCccccccccceecccchHHHHHHHHhcChhhhhhhhhcC-ccchhHHhhhhhhhhhhcCCcc--cccCcccc
Confidence 34444332 33333457999999999999999999999998554422 22456888877777766 5655 47788888
Q ss_pred ccccChhH
Q psy17184 155 YEKKDIAQ 162 (218)
Q Consensus 155 ~e~kn~~q 162 (218)
.+-....+
T Consensus 226 ~~~~~pde 233 (890)
T KOG0035|consen 226 VEAAIPDE 233 (890)
T ss_pred ccCCCCch
Confidence 88755443
No 45
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=34.86 E-value=37 Score=19.44 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=11.3
Q ss_pred CChHHHHHHHHHccCChhHHHHHHHHH
Q psy17184 1 MSLQRQVAAKIAAKRNPEQDKEAQAWI 27 (218)
Q Consensus 1 ~gl~~e~~~k~~~ky~~~~~~e~~~Wi 27 (218)
||++.+....-..+.+-+ .+.+..||
T Consensus 11 mGf~~~~a~~aL~~~~~d-~~~A~~~L 36 (37)
T smart00165 11 MGFSREEALKALRAANGN-VERAAEYL 36 (37)
T ss_pred cCCCHHHHHHHHHHhCCC-HHHHHHHH
Confidence 455555444333333322 23445554
No 46
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=33.80 E-value=40 Score=24.18 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhh-CCCCCCccchHHhhhchhHHHHHHH
Q psy17184 71 QDKEAQAWIETVT-GQKFPAGVLYEDAIKDGQILCHLIN 108 (218)
Q Consensus 71 ~e~~i~~wie~~l-~~~l~~~d~f~~~l~dG~iLc~L~n 108 (218)
..+.+..|+.-+. .+++++. ++...-.+|.-||.+-.
T Consensus 23 t~~~V~~WL~Wa~~ef~L~~v-~~~~F~m~Gk~LC~Ls~ 60 (89)
T cd08534 23 TEDQVLHWVVWAVKEFSLTDI-DLSDWNITGRELCSLTQ 60 (89)
T ss_pred CHHHHHHHHHHHHHHcCCCCC-ChhhcCCCHHHHhcCCH
Confidence 4678999999765 4788765 46666789999998753
No 47
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=33.36 E-value=39 Score=23.44 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhh-CCCCCCccchHHh-hhchhHHHHHHH
Q psy17184 71 QDKEAQAWIETVT-GQKFPAGVLYEDA-IKDGQILCHLIN 108 (218)
Q Consensus 71 ~e~~i~~wie~~l-~~~l~~~d~f~~~-l~dG~iLc~L~n 108 (218)
..+.|..|++-+. .+++++.+ +..- -.+|.-||.+-.
T Consensus 9 t~~~V~~WL~Wa~~ef~L~~~~-~~~F~~m~Gk~LC~Lsk 47 (75)
T cd08540 9 STDHVRQWLEWAVKEYGLPDVD-VLLFQNIDGKELCKMTK 47 (75)
T ss_pred CHHHHHHHHHHHHHHhCCCCCC-cccccCCCHHHHHhCCH
Confidence 3678999999765 47887754 4444 379999998753
No 48
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=33.33 E-value=37 Score=23.31 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhh-CCCCCCccchHHhhhchhHHHHHHH
Q psy17184 71 QDKEAQAWIETVT-GQKFPAGVLYEDAIKDGQILCHLIN 108 (218)
Q Consensus 71 ~e~~i~~wie~~l-~~~l~~~d~f~~~l~dG~iLc~L~n 108 (218)
..+.|..|++-+. .+++++. ++...-.+|.-||.+-.
T Consensus 8 t~~~V~~WL~Wa~~ef~L~~v-~~~~F~m~Gk~LC~ls~ 45 (71)
T cd08533 8 TETHVRQWLLWAVNEFSLEGV-NFQKFCMSGRDLCALGK 45 (71)
T ss_pred CHHHHHHHHHHHHHHcCCCCC-CcccCCCCHHHHHcCCH
Confidence 3578999999765 4677654 35555789999998753
No 49
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=31.91 E-value=36 Score=24.44 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhh-CCCCCCccchHHhhhchhHHHHHH
Q psy17184 71 QDKEAQAWIETVT-GQKFPAGVLYEDAIKDGQILCHLI 107 (218)
Q Consensus 71 ~e~~i~~wie~~l-~~~l~~~d~f~~~l~dG~iLc~L~ 107 (218)
....|..|++-+. .+++++. ++...-.+|.-||.+-
T Consensus 23 t~~~V~~WL~Wa~~ef~L~~i-~~~~F~m~Gk~LC~Ls 59 (88)
T cd08542 23 TETHVRDWVMWAVNEFSLKGV-DFQKFCMNGAALCALG 59 (88)
T ss_pred CHHHHHHHHHHHHHHcCCCCC-CcccCCCCHHHHHcCC
Confidence 3678999999755 4777654 3555568999999865
No 50
>PF09337 zf-H2C2: His(2)-Cys(2) zinc finger; InterPro: IPR015416 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents an H2C2-type zinc finger that binds to histone upstream activating sequence (UAS) elements found in histone gene promoters []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=30.45 E-value=61 Score=19.44 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=22.6
Q ss_pred CChHHHHHHHHHccCC-hhHHHHHHHHHHHH
Q psy17184 1 MSLQRQVAAKIAAKRN-PEQDKEAQAWIETV 30 (218)
Q Consensus 1 ~gl~~e~~~k~~~ky~-~~~~~e~~~Wie~~ 30 (218)
+|+.+ ...+++.+|- +...+++.+||..+
T Consensus 6 ~Gi~k-T~~~i~~~y~W~gm~~~V~~~ir~C 35 (39)
T PF09337_consen 6 PGINK-TTAKISQRYHWPGMKKDVRRVIRSC 35 (39)
T ss_pred CCHHH-HHHHHHHhheecCHHHHHHHHHhcC
Confidence 46666 4478888888 77888999999765
No 51
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=30.36 E-value=41 Score=19.46 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=13.3
Q ss_pred CChHHHHHHHHHccCChhHHHHHHHHH
Q psy17184 1 MSLQRQVAAKIAAKRNPEQDKEAQAWI 27 (218)
Q Consensus 1 ~gl~~e~~~k~~~ky~~~~~~e~~~Wi 27 (218)
||++++...+-..+.+- ..+.+..||
T Consensus 12 mGf~~~~~~~AL~~~~~-nve~A~~~L 37 (37)
T PF00627_consen 12 MGFSREQAREALRACNG-NVERAVDWL 37 (37)
T ss_dssp HTS-HHHHHHHHHHTTT-SHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCC-CHHHHHHhC
Confidence 67777755554444333 224566675
No 52
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=29.27 E-value=58 Score=23.49 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhhC-CCCCCccchHHh-hhchhHHHHHHH
Q psy17184 71 QDKEAQAWIETVTG-QKFPAGVLYEDA-IKDGQILCHLIN 108 (218)
Q Consensus 71 ~e~~i~~wie~~l~-~~l~~~d~f~~~-l~dG~iLc~L~n 108 (218)
..+.|..|+.-+.+ +++++. ++... -.+|.-||.+-.
T Consensus 21 t~~hV~~WL~Wa~~ef~L~~v-d~~~F~~m~Gk~LC~Lsk 59 (91)
T cd08541 21 TQEHVRQWLEWAIKEYGLMEI-DTSFFQNMDGKELCKMNK 59 (91)
T ss_pred CHHHHHHHHHHHHHHcCCCCC-ChhhccCCCHHHHHhCCH
Confidence 46789999997654 777654 35444 379999998753
No 53
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=28.58 E-value=38 Score=31.91 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCCC-c-hhHHHHhhhhhHHHhhhhhccCCCc
Q psy17184 23 AQAWIETVTGQKFPA-G-VLYEDAIKDGQILCHLINKLKPGSI 63 (218)
Q Consensus 23 ~~~Wie~~~g~~i~~-~-~~~~~~LkdGvvLC~L~n~l~P~~i 63 (218)
.+.|=...+|--.|+ + .+|.+.-|||.+||+|+|...|..+
T Consensus 130 lllwc~~~t~~y~p~vd~~df~rswrdGLaf~aLIh~~rPDtl 172 (612)
T COG5069 130 LLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTL 172 (612)
T ss_pred hheeccccccCcCCCccHHHHHHHhhhhHHHHHHHhhcCCccc
Confidence 334544445533342 2 4788999999999999999999754
No 54
>KOG3631|consensus
Probab=28.24 E-value=57 Score=28.51 Aligned_cols=42 Identities=31% Similarity=0.374 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHh-CCCCCCchhHHHHhhhhhHHHhhhhhccCC
Q psy17184 19 QDKEAQAWIETVT-GQKFPAGVLYEDAIKDGQILCHLINKLKPG 61 (218)
Q Consensus 19 ~~~e~~~Wie~~~-g~~i~~~~~~~~~LkdGvvLC~L~n~l~P~ 61 (218)
.-.-+..||.+++ ++.|-- -++++-|-||.||-+|..+|..-
T Consensus 91 l~kvLi~WiN~~L~~erIvV-r~LeEDlfDGqilqkL~ekL~~~ 133 (365)
T KOG3631|consen 91 LVKVLIDWINDVLVPERIVV-RSLEEDLFDGQILQKLFEKLAAL 133 (365)
T ss_pred HHHHHHHHHHHhhcchhhhH-HhhHHhhhhhHHHHHHHHHHHhh
Confidence 3446778998776 555532 35889999999999999998653
No 55
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=26.85 E-value=50 Score=23.73 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhh-CCCCCCccchHHhhhchhHHHHHH
Q psy17184 71 QDKEAQAWIETVT-GQKFPAGVLYEDAIKDGQILCHLI 107 (218)
Q Consensus 71 ~e~~i~~wie~~l-~~~l~~~d~f~~~l~dG~iLc~L~ 107 (218)
....|..|+.-+. .+++++. ++...-.+|.-||.+-
T Consensus 23 t~~~V~~WL~Wa~~ef~L~~i-~~~~F~m~Gk~LC~Ls 59 (89)
T cd08543 23 TEQQVCQWLLWATNEFSLVNV-NFQQFGMNGQELCNLG 59 (89)
T ss_pred CHHHHHHHHHHHHHHcCCCCC-CcccCCCChHHHHcCC
Confidence 4678999999754 4777764 3555568999999875
No 56
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=24.56 E-value=75 Score=22.13 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhhC-CCCCCccchHHhhhchhHHHHHHH
Q psy17184 71 QDKEAQAWIETVTG-QKFPAGVLYEDAIKDGQILCHLIN 108 (218)
Q Consensus 71 ~e~~i~~wie~~l~-~~l~~~d~f~~~l~dG~iLc~L~n 108 (218)
..+.|..||+.+.. ++++.. ++...-.+|..||.+-.
T Consensus 21 t~~~V~~Wl~w~~~~f~l~~~-~~~~f~~~G~~Lc~lt~ 58 (84)
T PF02198_consen 21 TKEDVLQWLRWVVREFDLPAI-DFSRFNMNGRELCSLTK 58 (84)
T ss_dssp -HHHHHHHHHHHHHHTT-SSC-HGGGGTS-HHHHHHSHH
T ss_pred CHHHHHHHHHHHHHhcCCCcC-chhccCCCHHHHHHcCH
Confidence 46789999986544 667653 36666889999998764
No 57
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=23.89 E-value=74 Score=18.18 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=10.6
Q ss_pred CChHHHHHHHHHccCChhHHHHHHHHH
Q psy17184 1 MSLQRQVAAKIAAKRNPEQDKEAQAWI 27 (218)
Q Consensus 1 ~gl~~e~~~k~~~ky~~~~~~e~~~Wi 27 (218)
||++++....-..+.+-+ .+.+..||
T Consensus 11 mGf~~~~~~~AL~~~~~d-~~~A~~~L 36 (38)
T cd00194 11 MGFSREEARKALRATNNN-VERAVEWL 36 (38)
T ss_pred cCCCHHHHHHHHHHhCCC-HHHHHHHH
Confidence 455544444433333332 22344554
No 58
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=23.89 E-value=90 Score=21.66 Aligned_cols=38 Identities=13% Similarity=0.409 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhhC-CCCCCc-cchHHhhhchhHHHHHHH
Q psy17184 71 QDKEAQAWIETVTG-QKFPAG-VLYEDAIKDGQILCHLIN 108 (218)
Q Consensus 71 ~e~~i~~wie~~l~-~~l~~~-d~f~~~l~dG~iLc~L~n 108 (218)
....+..||..... ..++.. .+|+.-.+||.-||.+.-
T Consensus 9 tk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~ 48 (74)
T cd08539 9 TKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSL 48 (74)
T ss_pred CHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccCH
Confidence 35689999998644 444432 368888999999998763
No 59
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=23.56 E-value=87 Score=27.18 Aligned_cols=73 Identities=25% Similarity=0.422 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhCCCccCccccchhccc---cChhHHHHHHH---HHHhhhh-------hcCCChhhhh----cCCceee
Q psy17184 130 NINNFQKAIKDYGVADIDVFQTVDLYEK---KDIAQVTNTIY---ALGREVF-------LRDFSEEQLQ----AGKTIIG 192 (218)
Q Consensus 130 NI~~Fl~~~~~~Gv~~~~lF~~~DL~e~---kn~~qV~~~l~---~L~r~~~-------~r~f~~~~l~----~~~~~i~ 192 (218)
++..||+.++++|..-+.=|.|.-|+++ +++...+++.. .+-|.|. +--|+++|-+ +|--+|-
T Consensus 96 ~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv 175 (268)
T PF09370_consen 96 DMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIV 175 (268)
T ss_dssp -HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEE
T ss_pred cHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEE
Confidence 6999999999999999999999999997 34444444332 1233333 3346777653 6888999
Q ss_pred eccccCCCCC
Q psy17184 193 LQAGSNKGAT 202 (218)
Q Consensus 193 lq~G~nk~as 202 (218)
..||.+.|.+
T Consensus 176 ~H~GlT~gG~ 185 (268)
T PF09370_consen 176 AHMGLTTGGS 185 (268)
T ss_dssp EE-SS-----
T ss_pred ecCCccCCCC
Confidence 9999887754
No 60
>PF03221 HTH_Tnp_Tc5: Tc5 transposase DNA-binding domain; InterPro: IPR006600 This entry represents a DNA-binding helix-turn-helix domain found in the pogo family of transposable elements, the centromere protein Cenp-B, and yeast PCD2. There is extensive sequence similarity between Cenp-B and transposase proteins encoded by the pogo superfamily of transposable elements, which includes the human Tigger and Jerky elements []. The HTH domain is composed of three alpha-helices, with the second and third helices connected via a turn comprise the helix-turn-helix motif. Helix 3 is termed the recognition helix as it binds the DNA major groove, as in other HTHs []. This conserved DNA-binding domain is found in the following proteins: Cenp-B (major centromere autoantigen B or centromere protein B), which appears to organise arrays of centromere satellite DNA into a higher order structure that then direct centromere formation and kinetochore assembly in mammalian chromosomes. The N terminus of Cenp-B contains two DNA-binding HTH domains, which bind to adjacent major grooves of DNA: a psq-type HTH domain followed by a CenpB-type HTH domain, which together bind specifically to the Cenp-B box, which occurs in alpha-satellite DNA in human centromeres []. Pogo family transposable elements includes both Tigger and Jerky elements []. Pogo contains two open reading frames flanked by inverted repeats. The N-terminal region of pogo transposase contains a Cenp-B-type HTH DNA-binding domain []. Mammalian jerky protein, involved in epileptic seizures in mice []. PDC2 (Pyruvate DeCarboxylase 2), which is a transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes. PDC2 may be important for a high basal level of PDC gene expression or play a positive role in the autoregulation control of PDC1 and PDC5 [, ]. ; PDB: 1HLV_A 1IUF_A.
Probab=22.31 E-value=81 Score=20.13 Aligned_cols=21 Identities=33% Similarity=0.754 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHhCCCCCC
Q psy17184 17 PEQDKEAQAWIETVTGQKFPA 37 (218)
Q Consensus 17 ~~~~~e~~~Wie~~~g~~i~~ 37 (218)
+++|..+..||.......+|.
T Consensus 2 ~~~E~~L~~wi~~~~~~g~~v 22 (66)
T PF03221_consen 2 PELEKALVEWIKRMRRKGFPV 22 (66)
T ss_dssp HHHHHHHHHHHHHHCGCT---
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 678999999999997655543
No 61
>PF03216 Rhabdo_ncap_2: Rhabdovirus nucleoprotein; InterPro: IPR004902 This is a family of Rhabdovirus nucleocapsid proteins. These proteins undergo phosphorylation.; GO: 0019013 viral nucleocapsid
Probab=21.07 E-value=2.7e+02 Score=24.60 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=50.1
Q ss_pred CCCCCccchHHhhhchhHHHHHHHhhCCCCcc----------cccCCC------------CccccchhHHHHHHHHHHhC
Q psy17184 85 QKFPAGVLYEDAIKDGQILCHLINKLKPGSVA----------KINSSG------------GQFKFMENINNFQKAIKDYG 142 (218)
Q Consensus 85 ~~l~~~d~f~~~l~dG~iLc~L~n~l~pg~i~----------ki~~~~------------~~f~~~eNI~~Fl~~~~~~G 142 (218)
+++++ ++..--+.-+|.+++-.++||.-. .+.++. ..=.-|-=|..|-+++..+|
T Consensus 158 qGv~E---L~~~~~~~~~l~kl~~~vRpGQKltkaiyg~IL~~l~dp~t~~~akal~a~rL~gTGMtmiglFtqAa~nlG 234 (357)
T PF03216_consen 158 QGVGE---LQHFSADRAALAKLAACVRPGQKLTKAIYGFILFELADPQTQRRAKALFAMRLNGTGMTMIGLFTQAAKNLG 234 (357)
T ss_pred cCcch---hheecccHHHHHHHHHhcCchhHHHHHHHHHHHHHhcCcccHHHHHHHHHhhhcCCCceehHHHHHHHHhcC
Confidence 56655 333344566788888888887310 111111 00012233899999999999
Q ss_pred CCccCccccchhccccChhHHHHHHHHHHhhhh
Q psy17184 143 VADIDVFQTVDLYEKKDIAQVTNTIYALGREVF 175 (218)
Q Consensus 143 v~~~~lF~~~DL~e~kn~~qV~~~l~~L~r~~~ 175 (218)
.+.. ||.|.=|+.+++.++..+-+...
T Consensus 235 a~pA------~LLedLcm~s~v~sarrivkLm~ 261 (357)
T PF03216_consen 235 ATPA------DLLEDLCMGSLVESARRIVKLMR 261 (357)
T ss_pred CCcH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9764 55666678888887776655554
No 62
>PF07882 Fucose_iso_N2: L-fucose isomerase, second N-terminal domain; InterPro: IPR012889 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta- sheets with surrounding alpha helices. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=20.75 E-value=1.4e+02 Score=24.41 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=21.9
Q ss_pred HHHHHHHHcc-CChhHHHHHHHHHHHHhC
Q psy17184 5 RQVAAKIAAK-RNPEQDKEAQAWIETVTG 32 (218)
Q Consensus 5 ~e~~~k~~~k-y~~~~~~e~~~Wie~~~g 32 (218)
.|+.+|+... ||++.-+.+..|+++-+.
T Consensus 37 ~Ei~RR~e~~iyD~~E~e~A~~W~~~~~~ 65 (181)
T PF07882_consen 37 SEIIRRMEEGIYDEEEFEKALAWVKENCK 65 (181)
T ss_dssp HHHHHHHHCT-S-HHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhCC
Confidence 3666777766 999999999999998765
No 63
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=20.68 E-value=4.5e+02 Score=21.11 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhCCC------CCCc-cchHHhhhchhHHHH
Q psy17184 73 KEAQAWIETVTGQK------FPAG-VLYEDAIKDGQILCH 105 (218)
Q Consensus 73 ~~i~~wie~~l~~~------l~~~-d~f~~~l~dG~iLc~ 105 (218)
..|-.|.|.++|.. ||+. ..+.+..+|||.+-.
T Consensus 110 MHVDAFFeYllg~~~~Y~t~iP~~~~~~~~~~RDGV~~ed 149 (175)
T PF09441_consen 110 MHVDAFFEYLLGKPHPYYTQIPPDNPPVSEPGRDGVPLED 149 (175)
T ss_pred hhHHHHHHHHhCCCCcccccCCCCCCCccccccCCCchhH
Confidence 34555666677743 4543 245577788986544
No 64
>KOG0081|consensus
Probab=20.44 E-value=3.6e+02 Score=21.89 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhCCCccCccccchhccccChhHHHHHHHHHH
Q psy17184 130 NINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALG 171 (218)
Q Consensus 130 NI~~Fl~~~~~~Gv~~~~lF~~~DL~e~kn~~qV~~~l~~L~ 171 (218)
+-..-.+.|++||+|- |+|. -..+.|+.+.+.||..|-
T Consensus 143 s~~qa~~La~kyglPY---fETS-A~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 143 SEDQAAALADKYGLPY---FETS-ACTGTNVEKAVELLLDLV 180 (219)
T ss_pred hHHHHHHHHHHhCCCe---eeec-cccCcCHHHHHHHHHHHH
Confidence 3455566788999996 6665 467899999999998763
Done!