RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17184
(218 letters)
>gnl|CDD|227526 COG5199, SCP1, Calponin [Cytoskeleton].
Length = 178
Score = 100 bits (251), Expect = 1e-26
Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 20/168 (11%)
Query: 65 AKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQ 124
+Q KE WIETV G+KF +KDG LC ++N+ P + K S
Sbjct: 8 CPGMDKQQKEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLDI-KYKESKMP 66
Query: 125 FKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREV---------F 175
F MENI++F +K V + ++FQT DL+E KD+ QV +Y+L R F
Sbjct: 67 FVQMENISSFINGLKKLRVPEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKERMFSGPF 126
Query: 176 L---------RDFS-EEQLQAGKTIIGLQAGSNKGATQAGQNIGAGRK 213
L R FS +E L K I LQ G + + Q+ + + +
Sbjct: 127 LGPHLATKKPRVFSSQEVLDRSKGAIHLQYGYSDLSEQSTEKGASNVR 174
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which
may be present as a single copy or in tandem repeats
(which increases binding affinity). The CH domain is
found in cytoskeletal and signal transduction proteins,
including actin-binding proteins like spectrin,
alpha-actinin, dystrophin, utrophin, and fimbrin,
proteins essential for regulation of cell shape
(cortexillins), and signaling proteins (Vav).
Length = 107
Score = 88.5 bits (220), Expect = 7e-23
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 70 EQDKEAQAWIETVTGQKFPAGVL-YEDAIKDGQILCHLINKLKPGSVAKINS-SGGQFKF 127
Q +E WI V G+ P + + +KDG LC L+N L P + K +FK
Sbjct: 1 SQKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKR 60
Query: 128 MENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGR 172
+ENIN + GV + F DL E D V +++L R
Sbjct: 61 LENINLALNFAEKLGVPVV-NFDAEDLVEDGDEKLVLGLLWSLIR 104
>gnl|CDD|214479 smart00033, CH, Calponin homology domain. Actin binding domains
present in duplicate at the N-termini of spectrin-like
proteins (including dystrophin, alpha-actinin). These
domains cross-link actin filaments into bundles and
networks. A calponin homology domain is predicted in
yeasst Cdc24p.
Length = 101
Score = 76.6 bits (189), Expect = 2e-18
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 73 KEAQAWIETVTGQKFPAGV--LYEDAIKDGQILCHLINKLKPGSV--AKINSSGGQFKFM 128
K W+ ++ + V D +KDG LC L+N L PG V K+ +S +FK +
Sbjct: 1 KTLLRWVNSLLAEYDKPPVTNFSSD-LKDGVALCALLNSLSPGLVDKKKVAASLSRFKKI 59
Query: 129 ENINNFQKAIKDYGVADIDVFQTVDLYE-KKDIAQVTNTIYAL 170
ENIN + G + +F+ DL E K I V T+ +L
Sbjct: 60 ENINLALSFAEKLGG-KVVLFEPEDLVEGPKLILGVIWTLISL 101
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain. The CH domain is
found in both cytoskeletal proteins and signal
transduction proteins. The CH domain is involved in
actin binding in some members of the family. However in
calponins there is evidence that the CH domain is not
involved in its actin binding activity. Most member
proteins have from two to four copies of the CH domain,
however some proteins such as calponin have only a
single copy.
Length = 104
Score = 66.5 bits (163), Expect = 1e-14
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 72 DKEAQAWIETVTGQKFPAGV--LYEDAIKDGQILCHLINKLKPGSV--AKINSSGGQFKF 127
+K WI V G+ V +ED ++DG LC L+NKL+PG + K+N + +F
Sbjct: 1 EKALLRWINEVLGEYGGLPVTNFFED-LRDGLALCALLNKLRPGLIDLKKVNKN--RFDK 57
Query: 128 MENINNFQKAI-KDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGR 172
+EN+N + K GV V + DL E + V + L R
Sbjct: 58 LENLNLALEFAEKKLGVP--KVLEPEDLVEDGNEKLVLTLLAQLFR 101
>gnl|CDD|227586 COG5261, IQG1, Protein involved in regulation of cellular
morphogenesis/cytokinesis [Cell division and chromosome
partitioning / Signal transduction mechanisms].
Length = 1054
Score = 69.1 bits (169), Expect = 9e-14
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 74 EAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKI-NSSGGQFKFMENIN 132
EA+ WIE V + P + +ED++++G L L + P I + QF+ +NIN
Sbjct: 48 EAKIWIEEVIEEALPE-LCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQFRHTDNIN 106
Query: 133 NFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYAL 170
F I+ G+ + F+ DLYEKK+I +V I+AL
Sbjct: 107 AFLDLIEHVGLPESFHFELQDLYEKKNIPKVIYCIHAL 144
>gnl|CDD|109460 pfam00402, Calponin, Calponin family repeat.
Length = 26
Score = 33.9 bits (78), Expect = 0.003
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 191 IGLQAGSNKGATQAGQN-IGAGRKII 215
+ LQ G+NKGA+Q G G R+I
Sbjct: 1 LSLQMGTNKGASQKGMTAYGLPRQIY 26
>gnl|CDD|237595 PRK14050, PRK14050, ferrichrome receptor precursor protein;
Provisional.
Length = 728
Score = 29.8 bits (67), Expect = 1.3
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 83 TGQKFPAGVLYEDAIKDGQILCHL--INK-----LKPGSVA-----KINSSGGQFKFMEN 130
G+++ AG+ YE + DG I + I K P + A ++ S G + + N
Sbjct: 535 EGEQYEAGIKYEPSFIDGLITASVFQITKKNVTVTDPLTFASTQLGEVRSRGFELEGKVN 594
Query: 131 INNFQKAIKDYGVADIDVFQTVD 153
+++ KA+ + D+++ + +
Sbjct: 595 LDDNWKALASFTYTDLEITEDAN 617
>gnl|CDD|225877 COG3340, PepE, Peptidase E [Amino acid transport and metabolism].
Length = 224
Score = 28.5 bits (64), Expect = 2.0
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 111 KPGSVAKINSSGGQFKFMENINNFQKAIKDYGVA--DIDVFQT-----VDLYEKKDIAQV 163
K ++A I ++ + + + A+ G+ ++ + + + K DI V
Sbjct: 31 KRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYV 90
Query: 164 T--NTIYALG--REVFLRDFSEEQLQAGKTIIGLQAGSN 198
NT L +E L D E+++AG IG AG+N
Sbjct: 91 GGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGAN 129
>gnl|CDD|219787 pfam08306, Glyco_hydro_98M, Glycosyl hydrolase family 98. This
domain is the putative catalytic domain of glycosyl
hydrolase family 98 proteins.
Length = 315
Score = 28.3 bits (63), Expect = 3.3
Identities = 25/103 (24%), Positives = 32/103 (31%), Gaps = 13/103 (12%)
Query: 72 DKEAQAWIET-VTG---QKFPA--GVLYEDA--IKDGQILCHLINKLKPGSVAKINSSGG 123
D + W+ET +K+P G Y + D Q H N LK GG
Sbjct: 104 DYTSAHWLETEWYDEFFRKYPNLLGFNYTENYWGYDNQCSPHWANYLK-----LTAKYGG 158
Query: 124 QFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNT 166
F + N F+ V Y K I NT
Sbjct: 159 YFIWGAQNNPLAIEKAFGENRKPAFFEAVQKYWKNFIFMEKNT 201
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases,
insulinase-like [Posttranslational modification, protein
turnover, chaperones].
Length = 937
Score = 28.5 bits (64), Expect = 3.4
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 18/104 (17%)
Query: 14 KRNPEQDKEAQAWIETVTGQKFPAGVLY--------EDAIKDGQILCHLINKLKPGSIAA 65
D++ I V + P +Y + K + L HLI PGS+ A
Sbjct: 246 PVPVVTDEQTGKIIHIVPAKPRPRLRIYFPIDDNSAKFRSKPDEYLSHLIGNESPGSLLA 305
Query: 66 KRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINK 109
+ I ++ P Y I L +K
Sbjct: 306 WLKKQG------LITELSAGLDPISGNYGVFA----ISYELTDK 339
>gnl|CDD|237903 PRK15078, PRK15078, polysaccharide export protein Wza;
Provisional.
Length = 379
Score = 27.7 bits (62), Expect = 4.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 54 LINKLKPGSIAAKRNPEQDKEAQAW 78
LI++L+P A+ NPE ++E +
Sbjct: 59 LIDQLRPRPNVAQPNPELEQEIANY 83
>gnl|CDD|182582 PRK10602, PRK10602, murein peptide amidase A; Provisional.
Length = 237
Score = 27.3 bits (61), Expect = 5.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 101 QILCHLINKLKPGSV 115
Q LC LI++L+P V
Sbjct: 139 QALCQLIHRLQPAWV 153
>gnl|CDD|217622 pfam03575, Peptidase_S51, Peptidase family S51.
Length = 154
Score = 26.8 bits (60), Expect = 5.5
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 152 VDLYEKKDIAQVT--NTIY--ALGREVFLRDFSEEQLQAGKTIIGLQAGSN 198
D + D+ V NT + L RE L D E +QAG IG AG+N
Sbjct: 30 EDKILEADVIYVGGGNTFHLLKLLRETGLDDIIREAVQAGLPYIGWSAGAN 80
>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 282
Score = 27.2 bits (61), Expect = 7.3
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 160 IAQVTNTIYALGREVFLRDFSEEQLQAGKTIIG 192
IAQV G +V + D S+ + G I
Sbjct: 18 IAQV---CAVAGYDVVMVDISDAAVDRGLATIT 47
>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix
hydrolase superfamily. MTH1, the mammalian counterpart
of MutT, hydrolyzes oxidized purine nucleoside
triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to
monophosphates, thereby preventing the incorporation of
such oxygen radicals during replication. This is an
important step in the repair mechanism in genomic and
mitochondrial DNA. Like other members of the Nudix
family, it requires a divalent cation, such as Mg2+ or
Mn2+, for activity, and contain the Nudix motif, a
highly conserved 23-residue block (GX5EX7REUXEEXGU,
where U = I, L or V), that functions as a metal binding
and catalytic site. MTH1 is predominantly localized in
the cytoplasm and mitochondria. Structurally, this
enzyme adopts a similar fold to MutT despite low
sequence similarity outside the conserved nudix motif.
The most distinctive structural difference between MutT
and MTH1 is the presence of a beta-hairpin, which is
absent in MutT. This results in a much deeper and
narrower substrate binding pocket. Mechanistically, MTH1
contains dual specificity for nucleotides that contain
2-OH-adenine bases and those that contain 8-oxo-guanine
bases.
Length = 137
Score = 26.4 bits (59), Expect = 8.4
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 97 IKDGQILCHLINKLKPGSVAKINSSGGQFKFMENI 131
++L L+N+ K N GG+ + E
Sbjct: 9 KDPDKVL--LLNRKKGPGWGGWNGPGGKVEPGETP 41
>gnl|CDD|130343 TIGR01276, thiB, thiamine ABC transporter, periplasmic binding
protein. This model finds the thiamine (and thiamine
pyrophosphate) ABC transporter periplasmic binding
protein ThiB in proteobacteria. Completed genomes having
this protein (E. coli, Vibrio cholera, Haemophilus
influenzae) also have the permease ThiP, described by
TIGRFAMs equivalog model TIGR01253 [Transport and
binding proteins, Other].
Length = 309
Score = 26.9 bits (59), Expect = 9.5
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 3 LQRQVAAKIAAKRNPEQDKEAQAWIETVTGQKF--PAGVLYEDAIKDGQILCHLINKLKP 60
LQ +VAA+ AA + PE ++ ++ + Q +Y + + + KL
Sbjct: 224 LQVEVAARTAASKQPELAQKFLQFLVSPAFQNAIPTGNWMY--PVANVTLPAGF-EKLTK 280
Query: 61 GSIAAKRNP-EQDKEAQAWIET 81
+ + P E + QAWI
Sbjct: 281 PATTLEFTPAEVAAQRQAWISE 302
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.377
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,269,554
Number of extensions: 1077489
Number of successful extensions: 957
Number of sequences better than 10.0: 1
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 29
Length of query: 218
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 125
Effective length of database: 6,812,680
Effective search space: 851585000
Effective search space used: 851585000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)