RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17184
(218 letters)
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 150 bits (380), Expect = 4e-47
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 69 PEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFM 128
P+ +++ + WIE TG++ + D +KDG ILC LINKL+PGSV K+N + +
Sbjct: 2 PQTERQLRVWIEGATGRRIGDN--FMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKL 59
Query: 129 ENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGR 172
ENI NF +AIK YGV D+F+ DL+E + QV +T+ AL
Sbjct: 60 ENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALAS 103
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 203
Score = 152 bits (384), Expect = 1e-46
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 63 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKIN-SS 121
+ A + EA+ WIE G +E ++++G +L L+ K +P + KI S+
Sbjct: 48 LQAYDYLCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSN 107
Query: 122 GGQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFL----- 176
QF+ +NIN F I G+ +I F+ D+YE K++ +V I+AL + +
Sbjct: 108 ELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAP 167
Query: 177 --------RDFSEEQLQAGKTII 191
F++E + +
Sbjct: 168 PLIKSDENLSFTDEDVSIIVRRL 190
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 136
Score = 146 bits (370), Expect = 3e-45
Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 63 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSG 122
+A K + ++++E + WIE VTG++ + D +KDG ILC INKL+PGSV KIN S
Sbjct: 10 LAQKYDHQREQELREWIEGVTGRRIGNN--FMDGLKDGIILCEFINKLQPGSVKKINEST 67
Query: 123 GQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGR 172
+ +ENI NF KAI YGV D+F+ DL+E + QV +T+ AL
Sbjct: 68 QNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALAS 117
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle,
protein binding; 2.21A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 159
Score = 144 bits (364), Expect = 3e-44
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 73 KEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKIN-SSGGQFKFMENI 131
EA+ WIE G +E ++++G +L L+ K +P + KI S+ QF+ +NI
Sbjct: 14 DEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNI 73
Query: 132 NNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFL-------------RD 178
N F I G+ +I F+ D+YE K++ +V I+AL + +
Sbjct: 74 NKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENLS 133
Query: 179 FSEEQLQAGKTII 191
F++E + +
Sbjct: 134 FTDEDVSIIVRRL 146
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo
sapiens}
Length = 190
Score = 143 bits (361), Expect = 3e-43
Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 73 KEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVA----------KINSSG 122
+EA+ W+E G+ P E+ +++G L L N P V+ + ++G
Sbjct: 28 EEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATG 87
Query: 123 GQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFL------ 176
F+ +N+ + A+ + G+ I +T D+Y++K++ + I+AL +F
Sbjct: 88 LHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKLGLAPQ 147
Query: 177 -------RDFSEEQLQAGKTII---GLQ 194
DF+EE++ KT + G+Q
Sbjct: 148 IQDLYGKVDFTEEEINNMKTELEKYGIQ 175
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Length = 144
Score = 140 bits (355), Expect = 5e-43
Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 64 AAKRNPEQDKEAQAWIETVTGQKFPAGVL----YEDAIKDGQILCHLINKLKPGSVAKI- 118
+ E ++ WI G ++ +K+G IL L+N L P +
Sbjct: 3 SGSSGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVK 62
Query: 119 ---NSSGGQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGR 172
N FK ME + F KA +DYGV D+FQTVDLYE KD+A V T+ ALG
Sbjct: 63 VPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGS 119
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 146
Score = 139 bits (351), Expect = 3e-42
Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 12/135 (8%)
Query: 63 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSG 122
+ +K +P+++ E + WIE +TG ++ +KDG ILC L+NKL+PGSV KIN S
Sbjct: 10 LLSKYDPQKEAELRTWIEGLTGLSIGPD--FQKGLKDGTILCTLMNKLQPGSVPKINRSM 67
Query: 123 GQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFLR----- 177
+ +EN++NF KA+ YG+ +D+F+ DL+E ++ QV ++ AL + +
Sbjct: 68 QNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKAKTKGLQSG 127
Query: 178 -----DFSEEQLQAG 187
+SE+Q ++G
Sbjct: 128 VDIGVKYSEKQERSG 142
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, protein binding; 2.50A {Homo sapiens}
Length = 193
Score = 140 bits (353), Expect = 4e-42
Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 23/145 (15%)
Query: 70 EQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVA----------KIN 119
+EA+ W+E G+ P E+ +++G L L N P V+ +
Sbjct: 47 CHLEEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYK 106
Query: 120 SSGGQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVF---- 175
++G F+ +N+ + A+ + G+ I +T D+Y++K++ + I+AL +F
Sbjct: 107 ATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKLGL 166
Query: 176 ---------LRDFSEEQLQAGKTII 191
DF+EE++ KT +
Sbjct: 167 APQIQDLYGKVDFTEEEINNMKTEL 191
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Length = 121
Score = 130 bits (329), Expect = 2e-39
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 66 KRNPEQDKEAQAWIETVTGQKFPAGVL------YEDAIKDGQILCHLINKLKPGSVAKIN 119
+++ W+ ++ + P + + ++K+G +LC LIN+L PGSV K
Sbjct: 2 SSGSSGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFC 61
Query: 120 -SSGGQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGR 172
+ + NIN+F K V ++F DLY + ++V +T+ A+ +
Sbjct: 62 LDPQTEADCINNINDFLKGCATLQV---EIFDPDDLYSGVNFSKVLSTLLAVNK 112
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Length = 155
Score = 131 bits (330), Expect = 4e-39
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 63 IAAKRNPEQDKEAQAWIETVTGQKF----PAGVLYEDAIKDGQILCHLINKLKP---GSV 115
I + + + ++ WI T + P +++ +KDG +LC LIN L P V
Sbjct: 10 IEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPV 69
Query: 116 AKINSSGGQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGR 172
KI +S FK ME I+ F +A + YG+ D+FQTVDL+E K++A V T+ LG
Sbjct: 70 KKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGG 126
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics,
northeast structural genomics consortiu PSI-biology,
calponin-homology domain; NMR {Homo sapiens}
Length = 126
Score = 113 bits (285), Expect = 9e-33
Identities = 22/110 (20%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 70 EQDKEAQAWIETVTGQKFPAGVL------YEDAIKDGQILCHLINKLKPGSVAKIN-SSG 122
++ W+ T+ + P + + ++KDG +LC L+ +L PG++ K+
Sbjct: 12 NSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPR 71
Query: 123 GQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGR 172
+ + + NI F + ++ F DLY+ ++ +V +++ L +
Sbjct: 72 SESECLSNIREFLRGCG--ASLRLETFDANDLYQGQNFNKVLSSLVTLNK 119
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 64.3 bits (156), Expect = 2e-12
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 69 PEQDKEAQAWIE---------TVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSV---- 115
E ++ W+ VT + L A++DG +LC L+N L P ++
Sbjct: 4 KELWRQCTHWLIQCRVLPPSHRVTWEGAQVCELA-QALRDGVLLCQLLNNLLPHAINLRE 62
Query: 116 AKINSSGGQFKFMENINNFQKAIKD-YGVADIDVFQTVDLYEKKDIAQVTNTI 167
+ QF ++NI F + +G+ ++F+ DL++ +D +V T+
Sbjct: 63 VNLRPQMSQFLCLKNIRTFLSTCCEKFGLKRSELFEAFDLFDVQDFGKVIYTL 115
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase,
all alpha, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 129
Score = 39.0 bits (91), Expect = 2e-04
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSVAKINSSG-GQFKFMENINNFQKAIKDYGV 143
L +D + DG +L +I + + IN + + +ENI+ + G+
Sbjct: 43 LQQD-VTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFLAAKGI 94
Score = 27.9 bits (62), Expect = 1.3
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSI 63
L +D + DG +L +I + I
Sbjct: 43 LQQD-VTDGVLLAQIIQVVANEKI 65
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 39.3 bits (91), Expect = 5e-04
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKF--MENINNFQKAIKDYGV 143
L D + DG L L+ L + + ++ F+ +EN++ + + +
Sbjct: 70 LQTD-LSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESI 122
Score = 32.3 bits (73), Expect = 0.090
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSIAAKRNP 69
L D + DG L L+ L + K N
Sbjct: 70 LQTD-LSDGLRLIALLEVLSQKKMHRKHNQ 98
Score = 30.0 bits (67), Expect = 0.53
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 97 IKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAI 138
+ G+ L L++ PG +S + + + N ++A+
Sbjct: 195 WQSGRALGALVDSCAPGLCPDWDS----WDASKPVTNAREAM 232
Score = 27.7 bits (61), Expect = 2.7
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 45 IKDGQILCHLINKLKPGSI 63
+ G+ L L++ PG
Sbjct: 195 WQSGRALGALVDSCAPGLC 213
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 39.2 bits (91), Expect = 5e-04
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKF--MENINNFQKAIKDYGV 143
L D + DG L L+ L + + F+ +EN++ + + +
Sbjct: 43 LQTD-LSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESI 95
Score = 31.5 bits (71), Expect = 0.16
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSIAAKRNP 69
L D + DG L L+ L + K +
Sbjct: 43 LQTD-LSDGLRLIALLEVLSQKRMYRKYHQ 71
Score = 30.3 bits (68), Expect = 0.38
Identities = 12/56 (21%), Positives = 20/56 (35%)
Query: 98 KDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKDYGVADIDVFQTVD 153
+DG+ L L++ PG S Q Q+A GV + + +
Sbjct: 169 QDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAVQQADDWLGVPQVITPEEII 224
Score = 27.6 bits (61), Expect = 2.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 46 KDGQILCHLINKLKPGSI 63
+DG+ L L++ PG
Sbjct: 169 QDGKALGALVDSCAPGLC 186
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 39.3 bits (91), Expect = 6e-04
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSV----AKINSSGGQFKFMENINNFQKAIKDYGVADID 147
++ED +++G IL +++K+ P SV A F+ +EN N K K + ++
Sbjct: 297 VFED-VRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLVN 355
Query: 148 VFQTVDLYE--KKDIAQVTNTI---YALGREVFLRDFSEEQLQAGKTII 191
V D+ + KK I + + + L LR + + I+
Sbjct: 356 V-AGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADIL 403
Score = 38.5 bits (89), Expect = 0.001
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQ----FKFMENINNFQKAIKDYGV 143
LYE +KDG +LC LIN PG++ + + + ++ EN + K G
Sbjct: 39 LYEL-VKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGC 93
Score = 32.4 bits (73), Expect = 0.11
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSI 63
LYE +KDG +LC LIN PG+I
Sbjct: 39 LYEL-VKDGVLLCKLINVAVPGTI 61
Score = 31.2 bits (70), Expect = 0.26
Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSIAAKRNP 69
++ED +++G IL +++K+ P S+ K
Sbjct: 297 VFED-VRNGWILLEVLDKVSPSSVNWKHAS 325
Score = 27.7 bits (61), Expect = 3.2
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 50 ILCHLINKLKPGSIAAKRNPEQDKEAQAWIETVTGQKFPAGVLY---EDAIKDGQILCHL 106
+ H++ LK D + +W + + ++ G +L
Sbjct: 377 MRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNL 436
Query: 107 INKLKPGSV 115
+ ++P V
Sbjct: 437 LWAVEPRVV 445
Score = 27.7 bits (61), Expect = 3.4
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 45 IKDGQILCHLINKLKPGSI 63
+KD Q L+N L P
Sbjct: 181 LKDAQAYAFLLNVLAPEHC 199
Score = 27.4 bits (60), Expect = 4.3
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 97 IKDGQILCHLINKLKPGSV 115
+KD Q L+N L P
Sbjct: 181 LKDAQAYAFLLNVLAPEHC 199
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 38.8 bits (90), Expect = 6e-04
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSVAK--INSSGG-QFKFMENINNFQKAIKDYGV 143
L++ + DG +LC +IN P ++ + IN F EN+N + G
Sbjct: 56 LFKA-VGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGC 109
Score = 31.8 bits (72), Expect = 0.11
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSI 63
L++ + DG +LC +IN P +I
Sbjct: 56 LFKA-VGDGIVLCKMINLSVPDTI 78
Score = 26.8 bits (59), Expect = 5.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 45 IKDGQILCHLINKLKPGSIAAKRNP 69
IKD + HL+N++ P
Sbjct: 196 IKDSKAYFHLLNQIAPKGQKEGEPR 220
Score = 26.8 bits (59), Expect = 5.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 97 IKDGQILCHLINKLKPG 113
IKD + HL+N++ P
Sbjct: 196 IKDSKAYFHLLNQIAPK 212
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 7e-04
Identities = 19/153 (12%), Positives = 47/153 (30%), Gaps = 51/153 (33%)
Query: 37 AGVL-YEDAIK----DGQILCHLINK------------LKPGSIAAKRNPEQDKEAQAWI 79
A V+ E ++ G + + + + PG +AA + E Q +
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE---ALQYVV 1830
Query: 80 ETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQF----KFMENINNFQ 135
E V + G ++ + N Q+ + ++
Sbjct: 1831 ERV-------------GKRTGWLV----------EIVNYNVENQQYVAAGD-LRALDTVT 1866
Query: 136 KAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIY 168
+ + ID+ ++L + + +V ++
Sbjct: 1867 NVLNFIKLQKIDI---IELQKSLSLEEVEGHLF 1896
Score = 27.7 bits (61), Expect = 3.5
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 23/73 (31%)
Query: 150 QTV----DLYEKKDIAQVTNTIYALGREVFLR--DFSEEQLQAGKTIIGLQAGSNKGATQ 203
Q DLY+ A ++V+ R + ++ G +I+ + + T
Sbjct: 1627 QEQGMGMDLYKTSKAA----------QDVWNRADNHFKDTY--GFSILDIVINNPVNLTI 1674
Query: 204 --AGQNIGAGRKI 214
G+ G++I
Sbjct: 1675 HFGGEK---GKRI 1684
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 35.5 bits (81), Expect = 0.009
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 22/139 (15%)
Query: 68 NPEQDKEAQAWI------ETVTGQKFPAGV----LYEDAIKDGQILCHLINKLKPGSVAK 117
N E+ +E I + G + P ++ KDG IL LIN P ++ +
Sbjct: 10 NEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQ-CKDGLILSKLINDSVPDTIDE 68
Query: 118 INSSGGQ-------FKFMENIN---NFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTI 167
+ + FK +EN N N KA+ + +I ++ E I + I
Sbjct: 69 RVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGRE-HLILGLVWQI 127
Query: 168 YALGREVFLRDFSEEQLQA 186
G + +L
Sbjct: 128 IRRGLLGKIDITLHPELYR 146
Score = 29.7 bits (66), Expect = 0.83
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 11/62 (17%)
Query: 16 NPEQDKEAQAWI------ETVTGQKFPAGV----LYEDAIKDGQILCHLINKLKPGSIAA 65
N E+ +E I + G + P ++ KDG IL LIN P +I
Sbjct: 10 NEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQ-CKDGLILSKLINDSVPDTIDE 68
Query: 66 KR 67
+
Sbjct: 69 RV 70
Score = 28.2 bits (62), Expect = 2.6
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 95 DAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAI 138
+I G + +++ +K V N I N + AI
Sbjct: 436 PSISTGVFVLDVLHGIKSEYV-DYNLVTDGSTEELAIQNARLAI 478
Score = 27.8 bits (61), Expect = 3.6
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 43 DAIKDGQILCHLINKLKPGSI 63
+I G + +++ +K +
Sbjct: 436 PSISTGVFVLDVLHGIKSEYV 456
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex,
oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP:
a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A*
1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A*
3hdh_A*
Length = 302
Score = 33.7 bits (78), Expect = 0.029
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 160 IAQVTNTIYAL-GREVFLRDFSEEQLQAGKTII--GLQAGSNKGATQAGQNIGAGRKIIL 216
IAQV A G V L D +E+ L K I L+ + K + + + L
Sbjct: 30 IAQVA----AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTL 85
Query: 217 GK 218
Sbjct: 86 ST 87
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: PE8; 2.00A {Archaeoglobus
fulgidus}
Length = 293
Score = 31.0 bits (71), Expect = 0.24
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 160 IAQVTNTIYALGREVFLRDFSEEQLQAGKTII 191
IA A EV L+D SE+ L+A + I
Sbjct: 27 IAIA----IASKHEVVLQDVSEKALEAAREQI 54
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 29.5 bits (66), Expect = 0.77
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKDYGV 143
+ ED ++G L L+ + + + + +F + N+N I GV
Sbjct: 50 IEED-FRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFIASKGV 100
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Length = 124
Score = 26.5 bits (58), Expect = 3.6
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 94 EDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAI 138
+ I + LI+ ++PG + G + NN + A+
Sbjct: 34 DKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAV 78
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 27.2 bits (60), Expect = 3.7
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 50 ILCHLINKLKPGSIAAKRNPEQDKEAQAWIETVTGQKFPAGVL-YEDAIKDGQILCHLIN 108
IL + + +A + +K +W+ T V+ + + DG L LI+
Sbjct: 115 ILHWQVKNVMKNIMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIH 174
Query: 109 KLKPGSVAKINSSGGQFKFMENINN-FQKAIKDYGVA 144
+P NS Q + + + F A G+
Sbjct: 175 SHRPDLF-DWNSVVSQQSATQRLEHAFNIARYQLGIE 210
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 27.6 bits (60), Expect = 4.3
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKDYGV 143
+ ED +DG L L+ + +AK + + N+N I GV
Sbjct: 31 IEED-FRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGV 81
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 4.8
Identities = 4/16 (25%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 156 EKKDIAQVTNTI--YA 169
EK+ + ++ ++ YA
Sbjct: 18 EKQALKKLQASLKLYA 33
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A
{Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A
3egm_A
Length = 181
Score = 26.5 bits (59), Expect = 4.8
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 146 IDVFQTVDLYEKKDIAQVTNTIYALGREV-------FLRDFSEEQLQAGKTI 190
+FQ ++ I++ N I + FL+ + EQ +
Sbjct: 98 TQIFQKA-YEHEQHISESINNIVDHAIKSKDHATFNFLQWYVAEQHEEEVLF 148
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family,
phosphinothricin, methionine sulfone, methionine
sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A
2j8n_A 2j8r_A* 1yvo_A
Length = 172
Score = 26.0 bits (58), Expect = 7.5
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 22 EAQAWIETVTGQKFPAGVLYEDAIKDGQIL 51
QAW + Q +P V + G++L
Sbjct: 40 NRQAWFDARARQGYPILVASDA---AGEVL 66
Score = 26.0 bits (58), Expect = 7.5
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 74 EAQAWIETVTGQKFPAGVLYEDAIKDGQIL 103
QAW + Q +P V + G++L
Sbjct: 40 NRQAWFDARARQGYPILVASDA---AGEVL 66
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein,
glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus
thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Length = 314
Score = 26.6 bits (59), Expect = 7.7
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 100 GQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKDYGVADIDV 148
+ L+N G A S+GG + NIN + +A D+
Sbjct: 36 ATGIAKLVNDANVGIRANARSTGG---SVANINAINAGEFEMALAQNDI 81
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction,
alternative splicing, calponin homology domain,
actin-binding, cell membrane; 1.05A {Homo sapiens} PDB:
2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Length = 131
Score = 25.6 bits (56), Expect = 8.6
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSVAKIN---SSGGQFKFMENINNFQKAIKDYGV 143
L DG L L+ L+ V + + + + N++ + ++D G+
Sbjct: 45 LETQ-FADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGL 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.377
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,414,477
Number of extensions: 208989
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 87
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.8 bits)