RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17184
(218 letters)
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 108
Score = 128 bits (324), Expect = 3e-39
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 69 PEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFM 128
P+ +++ + WIE TG++ + D +KDG ILC LINKL+PGSV K+N + +
Sbjct: 2 PQTERQLRVWIEGATGRRIGDN--FMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKL 59
Query: 129 ENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGR 172
ENI NF +AIK YGV D+F+ DL+E + QV +T+ AL
Sbjct: 60 ENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALAS 103
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 144
Score = 122 bits (306), Expect = 4e-36
Identities = 41/115 (35%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 66 KRNPEQDKEAQAWIETVTGQKFPAGVL----YEDAIKDGQILCHLINKLKPGSVAKI--- 118
E ++ WI G ++ +K+G IL L+N L P +
Sbjct: 5 SSGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVP 64
Query: 119 -NSSGGQFKFMENINNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGR 172
N FK ME + F KA +DYGV D+FQTVDLYE KD+A V T+ ALG
Sbjct: 65 ENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGS 119
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 159
Score = 112 bits (282), Expect = 3e-32
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 73 KEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKIN-SSGGQFKFMENI 131
EA+ WIE G +E ++++G +L L+ K +P + KI S+ QF+ +NI
Sbjct: 14 DEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNI 73
Query: 132 NNFQKAIKDYGVADIDVFQTVDLYEKKDIAQVTNTIYALGREVFL-------------RD 178
N F I G+ +I F+ D+YE K++ +V I+AL + +
Sbjct: 74 NKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENLS 133
Query: 179 FSEEQLQAGKTII 191
F++E + +
Sbjct: 134 FTDEDVSIIVRRL 146
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 36.1 bits (83), Expect = 0.002
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQ----FKFMENINNFQKAIKDYGV 143
LYE +KDG +LC LIN PG++ + + + ++ EN + K G
Sbjct: 33 LYEL-VKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGC 87
Score = 32.7 bits (74), Expect = 0.029
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSIAAK-RNPEQDKEAQAWIETVT 83
LYE +KDG +LC LIN PG+I + N ++ E T
Sbjct: 33 LYEL-VKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHT 76
Score = 28.8 bits (64), Expect = 0.51
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 50 ILCHLINKLKPGSIAAKRNPEQDKEAQAWIETVT---GQKFPAGVLYEDAIKDGQILCHL 106
+ H++ LK D + +W G+K + ++ G +L
Sbjct: 371 MRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNL 430
Query: 107 INKLKPGSV 115
+ ++P V
Sbjct: 431 LWAVEPRVV 439
Score = 28.0 bits (62), Expect = 0.96
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 25 AWIETVTGQKFPAGVL--YEDAIKDGQILCHLINKLKPGSI 63
W+ + + + +KD Q L+N L P
Sbjct: 153 KWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHC 193
Score = 27.3 bits (60), Expect = 1.6
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 77 AWIETVTGQKFPAGVL--YEDAIKDGQILCHLINKLKPGSV 115
W+ + + + +KD Q L+N L P
Sbjct: 153 KWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHC 193
Score = 26.9 bits (59), Expect = 2.4
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 45 IKDGQILCHLINKLKPGSI----AAKRNPEQDKEAQA 77
+ G +L+ ++P + K + +K A
Sbjct: 421 LSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNA 457
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 505
Score = 35.8 bits (82), Expect = 0.003
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSIA----AKRNPEQDKEAQAWIETVT 83
++ KDG IL LIN P +I K+ + + IE
Sbjct: 36 FFDQ-CKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNN 82
Score = 34.2 bits (78), Expect = 0.009
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSV--------AKINSSGGQFKFMENINNFQKAIKDYGV 143
+ + ++DG IL +K+ P +V +FK +EN N K+ G
Sbjct: 298 FFNN-LRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGF 356
Score = 33.5 bits (76), Expect = 0.015
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQ-------FKFMENIN---NFQKAIKDY 141
++ KDG IL LIN P ++ + + + FK +EN N N KA+
Sbjct: 36 FFDQ-CKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGI 94
Query: 142 GVADID 147
+ +I
Sbjct: 95 SITNIG 100
Score = 30.4 bits (68), Expect = 0.18
Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 15/111 (13%)
Query: 50 ILCHLINKLKPGSIAAKRNPEQDKEAQAWIETVTGQKFPAGVLYED----AIKDGQILCH 105
+ ++ L S++ D + AW ++ + G +I G +
Sbjct: 382 MRMNITKTLH--SLSRGGKTLSDSDMVAWANSMAAKGGK-GSQIRSFRDPSISTGVFVLD 438
Query: 106 LINKLKPGSV--AKINSSGGQFKFMENINNFQKAIKDYGVA------DIDV 148
+++ +K V + + ++N + G DI
Sbjct: 439 VLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIARKLGAVIFILPEDIVA 489
Score = 29.6 bits (66), Expect = 0.27
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 9/82 (10%)
Query: 4 QRQVAAKIAAKRNPEQDKEAQAWIETVTGQKFPAGVLYED----AIKDGQILCHLINKLK 59
+ ++ D + AW ++ + G +I G + +++ +K
Sbjct: 386 ITKTLHSLSRGGKTLSDSDMVAWANSMAAKGGK-GSQIRSFRDPSISTGVFVLDVLHGIK 444
Query: 60 PGSI----AAKRNPEQDKEAQA 77
+ + E+ A
Sbjct: 445 SEYVDYNLVTDGSTEELAIQNA 466
Score = 28.5 bits (63), Expect = 0.76
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSIAAKR 67
+ + ++DG IL +K+ P ++ K+
Sbjct: 298 FFNN-LRDGLILLQAYDKITPNTVNWKK 324
Score = 26.5 bits (58), Expect = 2.7
Identities = 11/98 (11%), Positives = 30/98 (30%), Gaps = 11/98 (11%)
Query: 76 QAWIETVTGQKFPAGVL--YEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINN 133
W + + + DG+ L+N+L P ++ + + +
Sbjct: 159 LRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSR-----APLQTTDVLQR 213
Query: 134 FQKAI---KDYGVA-DIDVFQTVDLYEKKDIAQVTNTI 167
++ + + + V K ++A V +
Sbjct: 214 AEQVLQNAEKLDCRKYLTPTAMVAGNPKLNLAFVAHLF 251
Score = 25.8 bits (56), Expect = 5.2
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 24 QAWIETVTGQKFPAGVL--YEDAIKDGQILCHLINKLKPGSIAAKRNPEQDKEAQA 77
W + + + DG+ L+N+L P + D +A
Sbjct: 159 LRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTTDVLQRA 214
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 33.0 bits (75), Expect = 0.008
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKDYG 142
L+ D ++DG+ L L+ L + K S + + N+N + +++
Sbjct: 32 LFSD-LQDGRRLLDLLEGLTGQKLPKEKGS-TRVHALNNVNKALRVLQNNN 80
Score = 28.0 bits (62), Expect = 0.35
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSIAAKR 67
L+ D ++DG+ L L+ L + ++
Sbjct: 32 LFSD-LQDGRRLLDLLEGLTGQKLPKEK 58
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 30.0 bits (67), Expect = 0.10
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSIAAKRNPEQDKEAQAWIETVTGQKFPAGVL---YEDA 96
LYED ++DG L L+ L S+ ++ + + Q + + L D
Sbjct: 33 LYED-LRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDD 91
Query: 97 IKDGQ--ILCHLINKL-KPGSVAKINSSG 122
I DG + LI + ++ I SG
Sbjct: 92 IADGNPKLTLGLIWTIILHFQISDIQVSG 120
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 29.6 bits (66), Expect = 0.10
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 92 LYEDAIKDGQILCHLINKLKPGSVA----KINSSGGQFKFMENINNFQKAIK 139
D IKD + HL+N++ P +I+ + F +++ + ++
Sbjct: 33 FSAD-IKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQ 83
Score = 26.5 bits (58), Expect = 1.2
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 40 LYEDAIKDGQILCHLINKLKPGSI 63
D IKD + HL+N++ P
Sbjct: 33 FSAD-IKDSKAYFHLLNQIAPKGQ 55
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 28.4 bits (63), Expect = 0.33
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 97 IKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIK 139
+DG++ +I++ KP + + N+ N +A
Sbjct: 34 WRDGRLFNAIIHRHKPMLI-----DMNKVYRQTNLENLDQAFS 71
Score = 26.4 bits (58), Expect = 1.2
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 45 IKDGQILCHLINKLKPGSIAAKRNPEQDKE 74
+DG++ +I++ KP I + Q
Sbjct: 34 WRDGRLFNAIIHRHKPMLIDMNKVYRQTNL 63
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 28.0 bits (62), Expect = 0.36
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 97 IKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIK 139
+DG LI+K +P + + K N Q A
Sbjct: 30 WRDGMAFNALIHKHRPDLIDF-----DKLKKSNAHYNLQNAFN 67
Score = 25.7 bits (56), Expect = 2.7
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 45 IKDGQILCHLINKLKPGSIAAKRNPEQDKE 74
+DG LI+K +P I + + +
Sbjct: 30 WRDGMAFNALIHKHRPDLIDFDKLKKSNAH 59
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 26.7 bits (59), Expect = 0.99
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 97 IKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIK 139
DG ++++ KP + + M I + A
Sbjct: 33 WTDGLAFNAVLHRHKPDLFSW-----DKVVKMSPIERLEHAFS 70
Score = 26.3 bits (58), Expect = 1.5
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 45 IKDGQILCHLINKLKPGSIAAKRNPEQDKE 74
DG ++++ KP + + +
Sbjct: 33 WTDGLAFNAVLHRHKPDLFSWDKVVKMSPI 62
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 204
Score = 27.6 bits (61), Expect = 1.00
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 107 INKLKPGSVAKINSSGGQFKFMEN 130
+LKPG+V + + F+E+
Sbjct: 176 AQRLKPGAVHVLTHDSEGYSFVES 199
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 26.8 bits (59), Expect = 1.2
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 97 IKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINN-FQKAIKDYGVADIDVFQTVD 153
DG L LI+ +P NS Q + + + F A G+ + + VD
Sbjct: 44 WSDGLALNALIHSHRPDLF-DWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPEDVD 100
Score = 25.7 bits (56), Expect = 3.1
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 45 IKDGQILCHLINKLKPGSIAAKRNPEQD 72
DG L LI+ +P Q
Sbjct: 44 WSDGLALNALIHSHRPDLFDWNSVVSQQ 71
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
N-terminal microtubule binding domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 25.9 bits (57), Expect = 2.1
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 73 KEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVA--KIN-SSGGQFKFME 129
+ AWI E G C ++ L PGS+A K+ + + ++++
Sbjct: 6 HDMLAWINESLQLNLTK---IEQL-CSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQ 61
Query: 130 NINNFQKAIKDYGV 143
N Q K GV
Sbjct: 62 NFKILQAGFKRMGV 75
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 206
Score = 26.6 bits (58), Expect = 2.1
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 107 INKLKPGSVAKINSSGGQFK 126
+ ++ G+V I+ G
Sbjct: 181 VYQVPAGAVMDIDLGSGTAV 200
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 25.3 bits (55), Expect = 3.4
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 42 EDAIKDGQILCHLINKLKPGSIAAKRNPEQDKEAQAWIETVT 83
+ I + LI+ ++PG I +
Sbjct: 34 DKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAK 75
Score = 24.9 bits (54), Expect = 5.3
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 94 EDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINNFQKAIKDYGVADIDVF 149
+ I + LI+ ++PG + G + NN + A+ V+
Sbjct: 34 DKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGARVY 89
>d3cmna1 d.92.1.16 (A:43-391) Uncharacterized protein Caur0242
{Chloroflexus aurantiacus [TaxId: 1108]}
Length = 346
Score = 25.7 bits (56), Expect = 4.6
Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 13/51 (25%)
Query: 2 SLQRQVAAKIAAKRNPEQDKEAQA-------------WIETVTGQKFPAGV 39
RQ A +++ D A I G + P V
Sbjct: 5 EQARQAALRLSQWEQAPVDNRAFRREQYARMVALSEPLIADYLGVRLPEPV 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.377
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 807,889
Number of extensions: 37432
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 43
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)