BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17185
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 1 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSG 60
+A K + ++++E + WIE VTG++ G + D +KDG ILC INKL+PGSV KIN S
Sbjct: 10 LAQKYDHQREQELREWIEGVTGRRI--GNNFMDGLKDGIILCEFINKLQPGSVKKINEST 67
Query: 61 GQFKFMENIN---KGLTFIAITP 80
+ +ENI K +T + P
Sbjct: 68 QNWHQLENIGNFIKAITKYGVKP 90
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 1 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSG 60
+ +K +P+++ E + WIE +TG G ++ +KDG ILC L+NKL+PGSV KIN S
Sbjct: 10 LLSKYDPQKEAELRTWIEGLTG--LSIGPDFQKGLKDGTILCTLMNKLQPGSVPKINRSM 67
Query: 61 GQFKFMENIN 70
+ +EN++
Sbjct: 68 QNWHQLENLS 77
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 7 PEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFM 66
P+ +++ + WIE TG++ G + D +KDG ILC LINKL+PGSV K+N + +
Sbjct: 2 PQTERQLRVWIEGATGRRI--GDNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKL 59
Query: 67 ENINKGLTFI 76
ENI L I
Sbjct: 60 ENIGNFLRAI 69
>pdb|1P2X|A Chain A, Crystal Structure Of The Calponin-Homology Domain Of
Rng2 From Schizosaccharomyces Pombe
Length = 159
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 12 EAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKI-NSSGGQFKFMENIN 70
EA+ WIE G +E ++++G +L L+ K +P + KI S+ QF+ +NIN
Sbjct: 15 EAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNIN 74
Query: 71 KGLTFI--AITPQVFSNDSITIHSG 93
K L FI P++F + I+ G
Sbjct: 75 KFLDFIHGIGLPEIFHFELTDIYEG 99
>pdb|1P5S|A Chain A, Structure And Function Of The Calponin-Homology Domain Of
An Iqgap Protein From Schizosaccharomyces Pombe
Length = 203
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 12 EAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKI-NSSGGQFKFMENIN 70
EA+ WIE G +E ++++G +L L+ K +P + KI S+ QF+ +NIN
Sbjct: 59 EAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNIN 118
Query: 71 KGLTFI--AITPQVFSNDSITIHSG 93
K L FI P++F + I+ G
Sbjct: 119 KFLDFIHGIGLPEIFHFELTDIYEG 143
>pdb|1WYM|A Chain A, Solution Structure Of The Ch Domain Of Human
Transgelin-2
Length = 155
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 16 WIETV----TGQKFPAGVLYEDAIKDGQILCHLINKLKP---GSVAKINSSGGQFKFMEN 68
WI T G+ P +++ +KDG +LC LIN L P V KI +S FK ME
Sbjct: 25 WITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQ 84
Query: 69 INKGL 73
I++ L
Sbjct: 85 ISQFL 89
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAK 55
+ ++K+G +LC LIN+L PGSV K
Sbjct: 34 FLKSSLKNGVVLCKLINRLMPGSVEK 59
>pdb|2L3G|A Chain A, Solution Nmr Structure Of Ch Domain Of Rho Guanine
Nucleotide Exchange Factor 7 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4495e
Length = 126
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 26 PAGVLYEDAIKDGQILCHLINKLKPGSVAKI 56
P G L + ++KDG +LC L+ +L PG++ K+
Sbjct: 37 PEGFL-QASLKDGVVLCRLLERLLPGTIEKV 66
>pdb|2D86|A Chain A, Solution Structure Of The Ch Domain From Human Vav-3
Protein
Length = 143
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 34 AIKDGQILCHLINKLKPGSV----AKINSSGGQFKFMENINKGLT 74
++DG +LC L+N L+ S+ + QF ++NI LT
Sbjct: 43 TLRDGVLLCQLLNNLRAHSINLKEINLRPQMSQFLCLKNIRTFLT 87
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSV 53
LYE +KDG +LC LIN PG++
Sbjct: 39 LYE-LVKDGVLLCKLINVAVPGTI 61
>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
pdb|2EIX|B Chain B, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
Length = 243
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 41 LCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA----ITPQV 82
+ I+ L PG ++ GQF + N+ K + IA ITP +
Sbjct: 87 MSQYIDHLNPGDFLQVRGPKGQFDYKPNMVKEMGMIAGGTGITPML 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,176,848
Number of Sequences: 62578
Number of extensions: 161637
Number of successful extensions: 250
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 17
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)