Query psy17185
Match_columns 121
No_of_seqs 119 out of 888
Neff 6.6
Searched_HMMs 46136
Date Sat Aug 17 00:02:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2046|consensus 100.0 9.6E-33 2.1E-37 206.1 11.2 106 1-106 18-138 (193)
2 COG5199 SCP1 Calponin [Cytoske 99.9 6.6E-26 1.4E-30 163.8 8.5 110 2-112 7-135 (178)
3 cd00014 CH Calponin homology d 99.8 1.3E-18 2.7E-23 116.9 7.5 88 9-96 2-105 (107)
4 smart00033 CH Calponin homolog 99.7 2.4E-17 5.3E-22 109.6 6.2 79 10-88 2-93 (103)
5 KOG2128|consensus 99.7 2.1E-17 4.6E-22 149.0 7.5 90 10-99 44-148 (1401)
6 PF00307 CH: Calponin homology 99.6 3.6E-15 7.9E-20 99.9 6.4 87 10-96 1-106 (108)
7 COG5261 IQG1 Protein involved 99.6 2.5E-15 5.3E-20 131.1 6.0 88 10-98 46-149 (1054)
8 KOG2996|consensus 99.5 9.8E-14 2.1E-18 118.0 6.8 87 8-94 2-116 (865)
9 KOG0532|consensus 99.3 3.9E-12 8.5E-17 108.5 4.9 66 10-77 578-649 (722)
10 KOG0046|consensus 99.1 1.1E-10 2.4E-15 98.4 4.6 85 4-88 115-221 (627)
11 PF11971 CAMSAP_CH: CAMSAP CH 98.3 3.5E-07 7.6E-12 60.7 2.2 53 25-77 10-66 (85)
12 KOG0046|consensus 98.2 3.6E-06 7.7E-11 71.6 6.7 77 9-88 389-481 (627)
13 KOG0517|consensus 97.5 0.00023 5E-09 67.6 6.5 78 10-87 50-136 (2473)
14 COG5069 SAC6 Ca2+-binding acti 96.5 0.0048 1E-07 52.6 5.3 68 10-77 121-203 (612)
15 PF06395 CDC24: CDC24 Calponin 94.9 0.048 1E-06 36.5 3.9 59 30-88 5-70 (89)
16 KOG3631|consensus 93.0 0.44 9.6E-06 38.4 6.8 92 3-97 82-192 (365)
17 PF06294 DUF1042: Domain of Un 92.5 0.46 1E-05 34.7 5.8 63 13-77 1-66 (158)
18 PF05622 HOOK: HOOK protein; 87.1 1.1 2.4E-05 39.7 4.8 71 4-77 3-80 (713)
19 COG5069 SAC6 Ca2+-binding acti 80.4 2.5 5.4E-05 36.6 4.0 70 5-77 373-455 (612)
20 KOG3000|consensus 75.5 4.9 0.00011 32.4 4.2 40 10-53 17-56 (295)
21 KOG4217|consensus 75.1 17 0.00036 31.6 7.4 91 11-101 422-524 (605)
22 cd08537 SAM_PNT-ESE-1-like Ste 68.6 6.9 0.00015 25.6 3.0 37 10-46 15-53 (78)
23 cd08539 SAM_PNT-ESE-3-like Ste 63.6 9.9 0.00022 24.6 2.9 37 10-46 10-48 (74)
24 PF03221 HTH_Tnp_Tc5: Tc5 tran 60.8 25 0.00054 20.7 4.3 22 7-28 2-23 (66)
25 cd08532 SAM_PNT-PDEF-like Ster 59.1 6.1 0.00013 25.5 1.4 35 10-46 15-50 (76)
26 cd08203 SAM_PNT Sterile alpha 58.9 8.3 0.00018 23.9 1.9 36 10-46 7-43 (66)
27 cd08757 SAM_PNT_ESE Sterile al 52.0 10 0.00022 23.8 1.5 37 10-46 7-45 (68)
28 cd08536 SAM_PNT-Mae Sterile al 51.3 8.8 0.00019 24.1 1.1 36 10-46 7-43 (66)
29 cd08535 SAM_PNT-Tel_Yan Steril 51.2 12 0.00025 23.7 1.7 36 10-46 8-44 (68)
30 smart00251 SAM_PNT SAM / Point 50.7 10 0.00022 24.7 1.4 40 6-46 16-58 (82)
31 cd08531 SAM_PNT-ERG_FLI-1 Ster 48.3 13 0.00029 23.8 1.7 36 10-46 10-47 (75)
32 cd08534 SAM_PNT-GABP-alpha Ste 47.7 19 0.00041 23.9 2.4 40 6-46 18-60 (89)
33 PF02198 SAM_PNT: Sterile alph 40.0 13 0.00027 24.0 0.6 37 10-47 22-59 (84)
34 PF08368 FAST_2: FAST kinase-l 39.7 24 0.00052 23.1 1.9 21 90-110 6-27 (93)
35 cd08541 SAM_PNT-FLI-1 Sterile 39.0 26 0.00055 23.5 2.0 40 6-46 16-59 (91)
36 KOG0035|consensus 37.0 34 0.00074 31.7 3.0 48 29-77 164-211 (890)
37 cd08538 SAM_PNT-ESE-2-like Ste 36.3 25 0.00055 22.8 1.6 37 10-46 12-50 (78)
38 cd08533 SAM_PNT-ETS-1,2 Steril 36.2 19 0.00042 22.9 1.0 36 10-46 9-45 (71)
39 cd08540 SAM_PNT-ERG Sterile al 35.7 25 0.00054 22.6 1.5 36 10-46 10-47 (75)
40 cd08542 SAM_PNT-ETS-1 Sterile 33.0 20 0.00044 23.8 0.7 40 6-46 18-60 (88)
41 smart00674 CENPB Putative DNA- 31.9 1.1E+02 0.0025 18.0 4.1 23 6-28 4-26 (66)
42 PF10281 Ish1: Putative stress 28.1 87 0.0019 17.0 2.7 32 5-37 1-36 (38)
43 cd08543 SAM_PNT-ETS-2 Sterile 27.4 29 0.00064 23.1 0.7 40 6-46 18-60 (89)
44 PF11436 DUF3199: Protein of u 25.2 2E+02 0.0043 20.4 4.6 38 10-49 29-68 (124)
45 PF12579 DUF3755: Protein of u 24.1 54 0.0012 18.0 1.3 11 64-74 4-14 (35)
46 PF09564 RE_NgoBV: NgoBV restr 22.8 74 0.0016 24.9 2.3 26 63-88 182-207 (240)
47 PRK10941 hypothetical protein; 21.6 1.6E+02 0.0034 23.3 4.0 40 10-49 149-188 (269)
48 PF11464 Rbsn: Rabenosyn Rab b 21.2 96 0.0021 17.8 2.0 14 64-77 3-16 (42)
49 PF12247 MKT1_N: Temperature d 21.0 62 0.0014 21.4 1.4 36 17-54 4-39 (90)
50 PF00536 SAM_1: SAM domain (St 20.8 21 0.00045 21.1 -0.9 33 9-44 4-37 (64)
No 1
>KOG2046|consensus
Probab=100.00 E-value=9.6e-33 Score=206.12 Aligned_cols=106 Identities=36% Similarity=0.497 Sum_probs=95.6
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcccccCCCCchhHHHHHHHHHHhhh---
Q psy17185 1 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA--- 77 (121)
Q Consensus 1 ~~~k~d~~~e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~~f~~~eNI~~FL~ac~--- 77 (121)
|++|||++++.++++||+.+.....+...+|.+.|+||+|||+|+|+|+|++++++++|++.|+|||||++|+++|+
T Consensus 18 ~~~k~~~~~~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~~~f~qmEnIs~Fi~a~~~yg 97 (193)
T KOG2046|consen 18 IESKYDDELEKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYPGVVKKINESKMAFVQMENISNFIKAAKKYG 97 (193)
T ss_pred hhcccCHHHHHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCcCcccccccccccHHHHHHHHHHHHHHHhcC
Confidence 57999999999999999998666666555899999999999999999999999999999999999999999999998
Q ss_pred -------hccceecCCCh-----hHHHHHHhhhcCCCCCCc
Q psy17185 78 -------ITPQVFSNDSI-----TIHSGTGSHLTQPEWGRE 106 (121)
Q Consensus 78 -------~~~DLfe~kn~-----~L~aL~~~a~~~~~~~gp 106 (121)
|++||||++|+ ||++|++.|++...+.||
T Consensus 98 v~~~d~FqtvDLfE~kd~~~V~vtL~aLa~~a~~~~~~~~~ 138 (193)
T KOG2046|consen 98 VPEVDLFQTVDLFEGKDMAQVQVTLLALARKAQKKGLFSGP 138 (193)
T ss_pred CChhhcccccccccCCCHHHHHHHHHHHHHHHhhccccCCC
Confidence 99999999999 999999999976433333
No 2
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.93 E-value=6.6e-26 Score=163.80 Aligned_cols=110 Identities=26% Similarity=0.310 Sum_probs=97.4
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcccccCCCCchhHHHHHHHHHHhhh----
Q psy17185 2 AAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA---- 77 (121)
Q Consensus 2 ~~k~d~~~e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~~f~~~eNI~~FL~ac~---- 77 (121)
+.++.++.+.+++.||+.++++++.+.-+|.+.|+|||+||++.|...|+-| +..+++++|.|||||+.||+.++
T Consensus 7 ~~~~~~~~~kev~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~~~I-~yKeSkmpFVQmenIs~Fin~~~k~~v 85 (178)
T COG5199 7 RCPGMDKQQKEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLDI-KYKESKMPFVQMENISSFINGLKKLRV 85 (178)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCcccc-eecccCCceeeHHHHHHHHHHHHHhCC
Confidence 4678899999999999999999997755799999999999999999998884 46678999999999999999998
Q ss_pred ------hccceecCCCh-----hHHHHHHhhhc----CCCCCCcccCCCC
Q psy17185 78 ------ITPQVFSNDSI-----TIHSGTGSHLT----QPEWGREKPAACD 112 (121)
Q Consensus 78 ------~~~DLfe~kn~-----~L~aL~~~a~~----~~~~~gp~~~~~~ 112 (121)
||.||||.||. ||++|||+|++ ...+.||+++--+
T Consensus 86 pe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~~~~~~p~lGP~LatKk 135 (178)
T COG5199 86 PEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKERMFSGPFLGPHLATKK 135 (178)
T ss_pred CHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHhcCCCCCccCccccccC
Confidence 99999999998 99999999986 3377888876533
No 3
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.77 E-value=1.3e-18 Score=116.86 Aligned_cols=88 Identities=30% Similarity=0.428 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhCCCCC-CcchHHHHhhhHHHHHHHHHhhcCCCcccccC-CCCchhHHHHHHHHHHhhh---------
Q psy17185 9 QDKEAQAWIETVTGQKFP-AGVLYEDAIKDGQILCHLINKLKPGSVAKINS-SGGQFKFMENINKGLTFIA--------- 77 (121)
Q Consensus 9 ~e~~~~~WIe~vl~~~~~-~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~-~~~~f~~~eNI~~FL~ac~--------- 77 (121)
.++++.+||+.+++...+ ...+|.+.|+||++||+|+|.+.|+.++..+. +...|.+++||+.|+++|+
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~~~ 81 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVVNF 81 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCceecc
Confidence 578999999999998876 45689999999999999999999999976654 6778999999999999999
Q ss_pred hccceecCCCh-----hHHHHHHh
Q psy17185 78 ITPQVFSNDSI-----TIHSGTGS 96 (121)
Q Consensus 78 ~~~DLfe~kn~-----~L~aL~~~ 96 (121)
++.||++.+|. ||++|+++
T Consensus 82 ~~~Dl~~~~n~~~vl~~l~~l~~~ 105 (107)
T cd00014 82 DAEDLVEDGDEKLVLGLLWSLIRK 105 (107)
T ss_pred CHHHHhhCCCceeeHHHHHHHHHh
Confidence 67899988877 78877764
No 4
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.70 E-value=2.4e-17 Score=109.55 Aligned_cols=79 Identities=32% Similarity=0.537 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhCCCC-CCcchHHHHhhhHHHHHHHHHhhcCCCccccc--CCCCchhHHHHHHHHHHhhh---------
Q psy17185 10 DKEAQAWIETVTGQKF-PAGVLYEDAIKDGQILCHLINKLKPGSVAKIN--SSGGQFKFMENINKGLTFIA--------- 77 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~-~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~--~~~~~f~~~eNI~~FL~ac~--------- 77 (121)
++++.+|++.+++... ....+|.+.|+||++||+|+|.+.|+.+.... .+...|.+++||+.|+++|+
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~~~~~ 81 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGKLVLF 81 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCeeecc
Confidence 6789999999999875 33357999999999999999999999996544 45668999999999999999
Q ss_pred hccceecC-CCh
Q psy17185 78 ITPQVFSN-DSI 88 (121)
Q Consensus 78 ~~~DLfe~-kn~ 88 (121)
++.||+++ +++
T Consensus 82 ~~~Dl~~~~k~~ 93 (103)
T smart00033 82 EPEDLVEGNKLI 93 (103)
T ss_pred CHHHHhhcchHH
Confidence 78899998 566
No 5
>KOG2128|consensus
Probab=99.70 E-value=2.1e-17 Score=148.96 Aligned_cols=90 Identities=24% Similarity=0.398 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCccc-ccCCCCchhHHHHHHHHHHhhh----------h
Q psy17185 10 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAK-INSSGGQFKFMENINKGLTFIA----------I 78 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~k-i~~~~~~f~~~eNI~~FL~ac~----------~ 78 (121)
-+|++.|||+++|+++|+..+|.++||+||+|.+|.|.++|+.--. +......|+|.+||+.|++++. +
T Consensus 44 ~eE~k~W~e~cl~edL~pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~frHtdNi~q~~~~me~iglP~iF~~E 123 (1401)
T KOG2128|consen 44 VEEAKRWIEECLGEDLPPTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLHFRHTDNINQWLRAMESIGLPEIFYPE 123 (1401)
T ss_pred HHHHHHHHHHHhcccCCCchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCceeecchhHHHHHHHHhhcCCCcccccc
Confidence 3789999999999999998899999999999999999999976533 3344566999999999999998 9
Q ss_pred ccceecCCCh----hHHHHHHhhhc
Q psy17185 79 TPQVFSNDSI----TIHSGTGSHLT 99 (121)
Q Consensus 79 ~~DLfe~kn~----~L~aL~~~a~~ 99 (121)
+.|+||+||| |||||+.+..+
T Consensus 124 ~~Dvy~~kN~p~i~cihaLs~~l~k 148 (1401)
T KOG2128|consen 124 TTDVYEGKNIPVIYCIHALSLYLFK 148 (1401)
T ss_pred hhhhhcCCCCceeeHHHHHHHHHhc
Confidence 9999999999 99999998876
No 6
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.58 E-value=3.6e-15 Score=99.94 Aligned_cols=87 Identities=26% Similarity=0.405 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhCCC--CCCcchHHHHhhhHHHHHHHHHhhcCCCc--ccccCC-CCchhHHHHHHHHHHhhh-------
Q psy17185 10 DKEAQAWIETVTGQK--FPAGVLYEDAIKDGQILCHLINKLKPGSV--AKINSS-GGQFKFMENINKGLTFIA------- 77 (121)
Q Consensus 10 e~~~~~WIe~vl~~~--~~~~~~~~~~LrDGviLC~L~N~l~P~~v--~ki~~~-~~~f~~~eNI~~FL~ac~------- 77 (121)
|+++.+||+++++.. -..-.+|.+.|+||++||+|+|.+.|+.+ .++++. ++.|.+++||+.|+++|+
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~ 80 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP 80 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 678999999999865 22223689999999999999999999987 455221 278999999999999998
Q ss_pred --hccceecCCCh-----hHHHHHHh
Q psy17185 78 --ITPQVFSNDSI-----TIHSGTGS 96 (121)
Q Consensus 78 --~~~DLfe~kn~-----~L~aL~~~ 96 (121)
.+.||++..|. +|.+|.+.
T Consensus 81 ~~~~~dl~~~~~~~~vl~~l~~l~~~ 106 (108)
T PF00307_consen 81 LLSPEDLVEKGDEKSVLSFLWQLFRY 106 (108)
T ss_dssp TS-HHHHHSTT-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCcCHHHHHHHHHHHHHH
Confidence 78899977665 66666543
No 7
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.57 E-value=2.5e-15 Score=131.12 Aligned_cols=88 Identities=27% Similarity=0.469 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcccccC-CCCchhHHHHHHHHHHhhh----------h
Q psy17185 10 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINS-SGGQFKFMENINKGLTFIA----------I 78 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~-~~~~f~~~eNI~~FL~ac~----------~ 78 (121)
-.|++.||++++++.+|. ..|.+.||+||+|.+|...++|+.+.+|-. .+.+|+|++||+.||.... +
T Consensus 46 v~EaK~WIee~~~~~l~~-~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~~LQfrHtdNIN~Fld~i~~vGlPe~FhFE 124 (1054)
T COG5261 46 VSEAKIWIEEVIEEALPE-LCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQFRHTDNINAFLDLIEHVGLPESFHFE 124 (1054)
T ss_pred HHHHHHHHHHHhccCCch-hhHHHHHhccchHHHHHHHhCCCceeEeeecccceeeccccHHHHHhHhhhcCCcceeeee
Confidence 368899999999999994 359999999999999999999999988764 6789999999999999998 8
Q ss_pred ccceecCCCh-----hHHHHHHhhh
Q psy17185 79 TPQVFSNDSI-----TIHSGTGSHL 98 (121)
Q Consensus 79 ~~DLfe~kn~-----~L~aL~~~a~ 98 (121)
..||||+||+ |||||+.+..
T Consensus 125 l~DlYekKN~pkViyciHaL~~~ls 149 (1054)
T COG5261 125 LQDLYEKKNIPKVIYCIHALISMLS 149 (1054)
T ss_pred hHhhhccCCcchhHHHHHHHHHHhc
Confidence 8999999999 9999999773
No 8
>KOG2996|consensus
Probab=99.46 E-value=9.8e-14 Score=117.97 Aligned_cols=87 Identities=25% Similarity=0.421 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHH--hCCC----CCCc--chHHHHhhhHHHHHHHHHhhcCCCc--ccccC--CCCchhHHHHHHHHHHh
Q psy17185 8 EQDKEAQAWIETV--TGQK----FPAG--VLYEDAIKDGQILCHLINKLKPGSV--AKINS--SGGQFKFMENINKGLTF 75 (121)
Q Consensus 8 ~~e~~~~~WIe~v--l~~~----~~~~--~~~~~~LrDGviLC~L~N~l~P~~v--~ki~~--~~~~f~~~eNI~~FL~a 75 (121)
|...++.+|+..+ |-.+ .+.. .+|..+|||||+||+|+|.|.|++| ++|+. ..++|-|..||+.||.+
T Consensus 2 elWrqCarWLidckVLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~ 81 (865)
T KOG2996|consen 2 ELWRQCARWLIDCKVLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMF 81 (865)
T ss_pred cHHHHHHHHHhhccccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHH
Confidence 4678889999975 2221 1222 3799999999999999999999998 78885 35689999999999999
Q ss_pred hh-----------hccceecCCCh-----hHHHHH
Q psy17185 76 IA-----------ITPQVFSNDSI-----TIHSGT 94 (121)
Q Consensus 76 c~-----------~~~DLfe~kn~-----~L~aL~ 94 (121)
|. ++-|||+.+++ ||+.||
T Consensus 82 C~~~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS 116 (865)
T KOG2996|consen 82 CCEKFGLRDSELFEAFDLFDVRDFGKVIKTLSRLS 116 (865)
T ss_pred HHHHhCCchhhhcchhhhhhhhhHHHHHHHHHHhc
Confidence 98 77788888887 555555
No 9
>KOG0532|consensus
Probab=99.27 E-value=3.9e-12 Score=108.47 Aligned_cols=66 Identities=32% Similarity=0.393 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcccccCC------CCchhHHHHHHHHHHhhh
Q psy17185 10 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSS------GGQFKFMENINKGLTFIA 77 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~~------~~~f~~~eNI~~FL~ac~ 77 (121)
-.++++-||.-+..+++. ||..+|.||||||+|+|.++|.+|..|+.+ -+.-+++.|+.+||++|+
T Consensus 578 ~~QLRk~iEtRLk~sLp~--Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCR 649 (722)
T KOG0532|consen 578 MLQLRKLIETRLKVSLPE--DLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACR 649 (722)
T ss_pred HHHHHHHHHHHhcccCch--hHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHH
Confidence 356778888888888886 799999999999999999999999888742 234689999999999999
No 10
>KOG0046|consensus
Probab=99.08 E-value=1.1e-10 Score=98.42 Aligned_cols=85 Identities=24% Similarity=0.268 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHHHHHhCCC--------CCC-cchHHHHhhhHHHHHHHHHhhcCCCc--ccccC--CCCchhHHHHHH
Q psy17185 4 KRNPEQDKEAQAWIETVTGQK--------FPA-GVLYEDAIKDGQILCHLINKLKPGSV--AKINS--SGGQFKFMENIN 70 (121)
Q Consensus 4 k~d~~~e~~~~~WIe~vl~~~--------~~~-~~~~~~~LrDGviLC~L~N~l~P~~v--~ki~~--~~~~f~~~eNI~ 70 (121)
-|..++..++..||++.|+.+ +++ ..+|++.++||++||||+|.-.|++| +.||. ...+|...||.+
T Consensus 115 ti~eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~ 194 (627)
T KOG0046|consen 115 TINEEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFERNENLN 194 (627)
T ss_pred eecHHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhhhccchh
Confidence 467889999999999999854 223 45799999999999999999999999 67873 356899999999
Q ss_pred HHHHhhh---------hccceecCCCh
Q psy17185 71 KGLTFIA---------ITPQVFSNDSI 88 (121)
Q Consensus 71 ~FL~ac~---------~~~DLfe~kn~ 88 (121)
.-|.+++ .+.||-|++.+
T Consensus 195 l~lnSAkAiGc~VvNIga~Dl~eGrph 221 (627)
T KOG0046|consen 195 LALNSAKAIGCTVVNIGAQDLAEGRPH 221 (627)
T ss_pred hHHhhcccccceEEecCchhhhcCCce
Confidence 9999998 89999999998
No 11
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=98.31 E-value=3.5e-07 Score=60.73 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=45.4
Q ss_pred CCCcchHHHHhhhHHHHHHHHHhhcCCCc--cccc--CCCCchhHHHHHHHHHHhhh
Q psy17185 25 FPAGVLYEDAIKDGQILCHLINKLKPGSV--AKIN--SSGGQFKFMENINKGLTFIA 77 (121)
Q Consensus 25 ~~~~~~~~~~LrDGviLC~L~N~l~P~~v--~ki~--~~~~~f~~~eNI~~FL~ac~ 77 (121)
.+.-.+|...++||++||.|++...|+.+ ..|. ++.+.+..+.|+..|.++|.
T Consensus 10 ~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~ 66 (85)
T PF11971_consen 10 FPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQ 66 (85)
T ss_pred CcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHH
Confidence 34445799999999999999999999998 4455 56677999999999999998
No 12
>KOG0046|consensus
Probab=98.21 E-value=3.6e-06 Score=71.61 Aligned_cols=77 Identities=21% Similarity=0.388 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCCCCCc-chHHHHhhhHHHHHHHHHhhcCCCc--ccccCC----CCchhHHHHHHHHHHhhh----
Q psy17185 9 QDKEAQAWIETVTGQKFPAG-VLYEDAIKDGQILCHLINKLKPGSV--AKINSS----GGQFKFMENINKGLTFIA---- 77 (121)
Q Consensus 9 ~e~~~~~WIe~vl~~~~~~~-~~~~~~LrDGviLC~L~N~l~P~~v--~ki~~~----~~~f~~~eNI~~FL~ac~---- 77 (121)
+|+.++.||+++ .+.+. .++++.||||.||-++..++.||+| ++++++ +++|+..||.++-.+--+
T Consensus 389 eer~fr~WmNSl---gv~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav~lGk~~~F 465 (627)
T KOG0046|consen 389 EERTFRLWMNSL---GVNPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAVKLGKQLKF 465 (627)
T ss_pred HHHHHHHHHHhc---CCcHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcccccHHHhhcchHHHHHHhhcce
Confidence 456778999998 33322 2699999999999999999999988 556543 567999999999887766
Q ss_pred -----hccceecCCCh
Q psy17185 78 -----ITPQVFSNDSI 88 (121)
Q Consensus 78 -----~~~DLfe~kn~ 88 (121)
...|++++.-.
T Consensus 466 SLVgi~G~DI~dGNk~ 481 (627)
T KOG0046|consen 466 SLVGIAGQDIVDGNKT 481 (627)
T ss_pred eeeccccccccccchH
Confidence 88999999765
No 13
>KOG0517|consensus
Probab=97.50 E-value=0.00023 Score=67.61 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcccccCCCCchhHHHHHHHHHHhhh---------hcc
Q psy17185 10 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA---------ITP 80 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~~f~~~eNI~~FL~ac~---------~~~ 80 (121)
+.-+.+|+++.++.---.-.|++..|+||+.|.+|...|.-...+|.++.++.-+++||++.-|++.+ .+.
T Consensus 50 KKTFTKWvNShL~rv~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENvdKaLqFLkeqkVhLEniGsh 129 (2473)
T KOG0517|consen 50 KKTFTKWVNSHLARVSCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENVDKALQFLKEQKVHLENIGSH 129 (2473)
T ss_pred HHhHHHHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhhHHHHHHHHhcccccccCCcc
Confidence 34567799998864211123699999999999999999998888999999999999999999999888 788
Q ss_pred ceecCCC
Q psy17185 81 QVFSNDS 87 (121)
Q Consensus 81 DLfe~kn 87 (121)
|+.+|..
T Consensus 130 DIVDGN~ 136 (2473)
T KOG0517|consen 130 DIVDGNH 136 (2473)
T ss_pred cccCCcc
Confidence 8988853
No 14
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=96.54 E-value=0.0048 Score=52.61 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhCCC------CCC--cchHHHHhhhHHHHHHHHHhhcCCCc-ccc------cCCCCchhHHHHHHHHHH
Q psy17185 10 DKEAQAWIETVTGQK------FPA--GVLYEDAIKDGQILCHLINKLKPGSV-AKI------NSSGGQFKFMENINKGLT 74 (121)
Q Consensus 10 e~~~~~WIe~vl~~~------~~~--~~~~~~~LrDGviLC~L~N~l~P~~v-~ki------~~~~~~f~~~eNI~~FL~ 74 (121)
|.|+..-|+.++--+ .|+ ..+|+..-|||.++|+|+|..+|+++ ..+ +..-..|++.||-+.|+.
T Consensus 121 egelt~~~~lllwc~~~t~~y~p~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~qkknk~~n~~qafe~a~k~Ig 200 (612)
T COG5069 121 EGELTKHINLLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIG 200 (612)
T ss_pred hhhHHhhhhhheeccccccCcCCCccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchhhcccchhHHHHHHHHHHhhc
Confidence 446777777765422 232 23799999999999999999999976 333 223446999999999999
Q ss_pred hhh
Q psy17185 75 FIA 77 (121)
Q Consensus 75 ac~ 77 (121)
..+
T Consensus 201 i~r 203 (612)
T COG5069 201 IAR 203 (612)
T ss_pred hHh
Confidence 999
No 15
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=94.87 E-value=0.048 Score=36.55 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=42.7
Q ss_pred hHHHHhhhHHHHHHHHHhhcCCCcccccCCCC--chhHHHHHHHHHHhhh-----hccceecCCCh
Q psy17185 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGG--QFKFMENINKGLTFIA-----ITPQVFSNDSI 88 (121)
Q Consensus 30 ~~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~--~f~~~eNI~~FL~ac~-----~~~DLfe~kn~ 88 (121)
.++..+|-|.=||.|.|.++|..--.|+.... .=.+-..|-.|+.+|+ ...|+|--.|+
T Consensus 5 ~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl 70 (89)
T PF06395_consen 5 QLWKLFRQGYPLCVLFNALQPEEPLPVDPVSSDDLKVCKKAIYKFIQACKQELGFPDEELFTISDL 70 (89)
T ss_pred HHHHHHhCcCcHHHHHHccCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCccceeeeecc
Confidence 68999999999999999999975445543222 2246788999999998 44445544433
No 16
>KOG3631|consensus
Probab=93.03 E-value=0.44 Score=38.35 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=58.0
Q ss_pred CcCCHHHH---HHHHHHHHHHhCC-CCCCcchHHHHhhhHHHHHHHHHhhcCCCc--ccccCCCCchhHHHHHHHHHHhh
Q psy17185 3 AKRNPEQD---KEAQAWIETVTGQ-KFPAGVLYEDAIKDGQILCHLINKLKPGSV--AKINSSGGQFKFMENINKGLTFI 76 (121)
Q Consensus 3 ~k~d~~~e---~~~~~WIe~vl~~-~~~~~~~~~~~LrDGviLC~L~N~l~P~~v--~ki~~~~~~f~~~eNI~~FL~ac 76 (121)
++.||..+ .-+..||++++-. -|-- -++.+.|-||.||-+|..++.--.+ ..+. .+.--|..-+..-|+++
T Consensus 82 sr~DpK~~el~kvLi~WiN~~L~~erIvV-r~LeEDlfDGqilqkL~ekL~~~klev~evt--qse~~QkqKLq~Vleav 158 (365)
T KOG3631|consen 82 SRKDPKFEELVKVLIDWINDVLVPERIVV-RSLEEDLFDGQILQKLFEKLAALKLEVAEVT--QSEIGQKQKLQTVLEAV 158 (365)
T ss_pred cccChhHHHHHHHHHHHHHHhhcchhhhH-HhhHHhhhhhHHHHHHHHHHHhhhccchhhh--hhhHHHHHHHHHHHHHH
Confidence 45565444 3457899997653 3322 1689999999999999999873222 2232 23334555566666666
Q ss_pred h-----------hccceecCCCh--hHHHHHHhh
Q psy17185 77 A-----------ITPQVFSNDSI--TIHSGTGSH 97 (121)
Q Consensus 77 ~-----------~~~DLfe~kn~--~L~aL~~~a 97 (121)
. =.+|..-+||+ +|+-|-.+|
T Consensus 159 nr~L~~~~~q~kWsvdsIh~Kdl~ailhLLVaLa 192 (365)
T KOG3631|consen 159 NRSLQLPEWQAKWSVDSIHNKDLVAILHLLVALA 192 (365)
T ss_pred HHHhcCchhhhccchhhhccchHHHHHHHHHHHH
Confidence 5 45688889998 454444444
No 17
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=92.48 E-value=0.46 Score=34.69 Aligned_cols=63 Identities=11% Similarity=0.237 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcc--cccCCCCchhHHHHHHHH-HHhhh
Q psy17185 13 AQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVA--KINSSGGQFKFMENINKG-LTFIA 77 (121)
Q Consensus 13 ~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~--ki~~~~~~f~~~eNI~~F-L~ac~ 77 (121)
+.+||.+ +....+.. ++...+.||++++.++....|..|. .+..+.+.-..+.|-..| .+.++
T Consensus 1 l~~WL~~-l~ls~~~~-n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~~Ln~kvl~ 66 (158)
T PF06294_consen 1 LLKWLQS-LDLSRPPK-NIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWETLNEKVLK 66 (158)
T ss_dssp HHHHHHH-S--S--SS--HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHHHHHHHTTG
T ss_pred ChHHHhc-CCCCCCCC-chHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4689999 44444442 5889999999999999999999873 333344445677888877 66665
No 18
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=87.14 E-value=1.1 Score=39.69 Aligned_cols=71 Identities=20% Similarity=0.386 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCc-----ccccCC-CCchh-HHHHHHHHHHhh
Q psy17185 4 KRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSV-----AKINSS-GGQFK-FMENINKGLTFI 76 (121)
Q Consensus 4 k~d~~~e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v-----~ki~~~-~~~f~-~~eNI~~FL~ac 76 (121)
.+.++....+..||+.. ...-| ..=...|.|||+|..++..|.|... .+|+.. ...+. .+.|+..-++..
T Consensus 3 ~~~~~l~~~Lv~Wv~tf-~~~~~--~~~~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i 79 (713)
T PF05622_consen 3 DDKMELCDSLVTWVQTF-NLSAP--CSSYEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNI 79 (713)
T ss_dssp ----HHHHHHHHHHTT----SS-----SHHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHC-CCCCC--cCCHHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 34567788899999884 32222 2236899999999999999999854 244432 22333 567776666666
Q ss_pred h
Q psy17185 77 A 77 (121)
Q Consensus 77 ~ 77 (121)
.
T Consensus 80 ~ 80 (713)
T PF05622_consen 80 K 80 (713)
T ss_dssp H
T ss_pred H
Confidence 5
No 19
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=80.39 E-value=2.5 Score=36.56 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=46.3
Q ss_pred CCHHHHHHHHH---HHHHHhCCCCCCc-chHHHHhhhHHHHHHHHHhh-cCCCc--ccccCC------CCchhHHHHHHH
Q psy17185 5 RNPEQDKEAQA---WIETVTGQKFPAG-VLYEDAIKDGQILCHLINKL-KPGSV--AKINSS------GGQFKFMENINK 71 (121)
Q Consensus 5 ~d~~~e~~~~~---WIe~vl~~~~~~~-~~~~~~LrDGviLC~L~N~l-~P~~v--~ki~~~------~~~f~~~eNI~~ 71 (121)
+|.+-|.+++. |+.+. ++.+. .+++..+|||.+|.+..... .|.+| +.++.. -+.|+..||-+.
T Consensus 373 ~d~e~efear~~Tf~l~~~---~vsp~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~asG~E~~rfka~en~ny 449 (612)
T COG5069 373 FDAEGEFEARVFTFWLNSL---DVSPEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASGIEENRFKAFENENY 449 (612)
T ss_pred cchhhHHHHHHHHHHHHHh---cCChhhhhhcccHHHHHHHHHHHHhhcCCceechhhhcccccccchhhhhhhhcccch
Confidence 55666666654 77766 55443 37999999999998766555 59887 445432 246888888776
Q ss_pred HHHhhh
Q psy17185 72 GLTFIA 77 (121)
Q Consensus 72 FL~ac~ 77 (121)
-...-.
T Consensus 450 avdlG~ 455 (612)
T COG5069 450 AVDLGI 455 (612)
T ss_pred hhhhhh
Confidence 554443
No 20
>KOG3000|consensus
Probab=75.47 E-value=4.9 Score=32.41 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCc
Q psy17185 10 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSV 53 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v 53 (121)
..++..|+++++...+. -.+-+..|-..|.++.-+.|+.|
T Consensus 17 R~E~laW~N~~l~~n~~----kIEe~~tGaaycqlmd~l~p~~i 56 (295)
T KOG3000|consen 17 RLEILAWINDLLQLNLT----KIEELCTGAAYCQLMDMLFPPDI 56 (295)
T ss_pred hHHHHHHHHhhhhcchh----hhhhhcccchhhhhhhhccCCcc
Confidence 46788999999988875 36788899999999999999887
No 21
>KOG4217|consensus
Probab=75.10 E-value=17 Score=31.57 Aligned_cols=91 Identities=12% Similarity=0.101 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhCC-CCCCcc-h-HHHHhhhHHHHHHHHHhhcCCCcccccCCCCchh---HHHHHHHHHHhhhhccceec
Q psy17185 11 KEAQAWIETVTGQ-KFPAGV-L-YEDAIKDGQILCHLINKLKPGSVAKINSSGGQFK---FMENINKGLTFIAITPQVFS 84 (121)
Q Consensus 11 ~~~~~WIe~vl~~-~~~~~~-~-~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~~f~---~~eNI~~FL~ac~~~~DLfe 84 (121)
+.++.|.|++-|. ++++.| + +++.--=-+...+|++.-.|+.-+-|..++..|+ |..-+..+|+.+++-.-+..
T Consensus 422 ~virk~aekiPgf~el~paDq~lLlesaflelfvlRlAyRs~~~e~kliFcsG~vlhr~qC~rgfgewidsi~~FS~~l~ 501 (605)
T KOG4217|consen 422 EVIRKWAEKIPGFAELPPADQDLLLESAFLELFVLRLAYRSNPSEDKLIFCSGLVLHRLQCLRGFGEWIDSIREFSRSLH 501 (605)
T ss_pred HHHHHHHHhCcCcccCChhhHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecchhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4568899998874 465543 1 3333333355668888888877676666655554 44444455555543222333
Q ss_pred CC--Ch----hHHHHHHhhhcCC
Q psy17185 85 ND--SI----TIHSGTGSHLTQP 101 (121)
Q Consensus 85 ~k--n~----~L~aL~~~a~~~~ 101 (121)
.- |+ ||.+|+-+..+++
T Consensus 502 ~l~idi~AfacL~aLa~iTErhG 524 (605)
T KOG4217|consen 502 SLNIDISAFACLSALALITERHG 524 (605)
T ss_pred hchhhHHHHHHHHHHHhhhhhhc
Confidence 33 33 9999998887753
No 22
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=68.65 E-value=6.9 Score=25.58 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCC-CC-CcchHHHHhhhHHHHHHHHH
Q psy17185 10 DKEAQAWIETVTGQK-FP-AGVLYEDAIKDGQILCHLIN 46 (121)
Q Consensus 10 e~~~~~WIe~vl~~~-~~-~~~~~~~~LrDGviLC~L~N 46 (121)
+.+|.+||.-.++.+ +. .+.+|.....||--||.+.-
T Consensus 15 k~qVleWL~~~~e~n~~dl~~v~f~~F~MnG~~LC~l~~ 53 (78)
T cd08537 15 KTQVLEWISYHVEKNKYDASSIDFSRCDMDGATLCNCAL 53 (78)
T ss_pred HHHHHHHHHHHHHhccCCcccCCHHHhCCchHHHHccCH
Confidence 678999999988542 32 23468899999999998764
No 23
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=63.57 E-value=9.9 Score=24.58 Aligned_cols=37 Identities=14% Similarity=0.392 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCC-CCCC-cchHHHHhhhHHHHHHHHH
Q psy17185 10 DKEAQAWIETVTGQ-KFPA-GVLYEDAIKDGQILCHLIN 46 (121)
Q Consensus 10 e~~~~~WIe~vl~~-~~~~-~~~~~~~LrDGviLC~L~N 46 (121)
+..|.+||.-..+. +++. ..+|.....||--||.+.-
T Consensus 10 k~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~ 48 (74)
T cd08539 10 KYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSL 48 (74)
T ss_pred HHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccCH
Confidence 68899999987654 3433 3468999999999998764
No 24
>PF03221 HTH_Tnp_Tc5: Tc5 transposase DNA-binding domain; InterPro: IPR006600 This entry represents a DNA-binding helix-turn-helix domain found in the pogo family of transposable elements, the centromere protein Cenp-B, and yeast PCD2. There is extensive sequence similarity between Cenp-B and transposase proteins encoded by the pogo superfamily of transposable elements, which includes the human Tigger and Jerky elements []. The HTH domain is composed of three alpha-helices, with the second and third helices connected via a turn comprise the helix-turn-helix motif. Helix 3 is termed the recognition helix as it binds the DNA major groove, as in other HTHs []. This conserved DNA-binding domain is found in the following proteins: Cenp-B (major centromere autoantigen B or centromere protein B), which appears to organise arrays of centromere satellite DNA into a higher order structure that then direct centromere formation and kinetochore assembly in mammalian chromosomes. The N terminus of Cenp-B contains two DNA-binding HTH domains, which bind to adjacent major grooves of DNA: a psq-type HTH domain followed by a CenpB-type HTH domain, which together bind specifically to the Cenp-B box, which occurs in alpha-satellite DNA in human centromeres []. Pogo family transposable elements includes both Tigger and Jerky elements []. Pogo contains two open reading frames flanked by inverted repeats. The N-terminal region of pogo transposase contains a Cenp-B-type HTH DNA-binding domain []. Mammalian jerky protein, involved in epileptic seizures in mice []. PDC2 (Pyruvate DeCarboxylase 2), which is a transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes. PDC2 may be important for a high basal level of PDC gene expression or play a positive role in the autoregulation control of PDC1 and PDC5 [, ]. ; PDB: 1HLV_A 1IUF_A.
Probab=60.78 E-value=25 Score=20.69 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCc
Q psy17185 7 PEQDKEAQAWIETVTGQKFPAG 28 (121)
Q Consensus 7 ~~~e~~~~~WIe~vl~~~~~~~ 28 (121)
|+.|.++.+||.......++..
T Consensus 2 ~~~E~~L~~wi~~~~~~g~~vt 23 (66)
T PF03221_consen 2 PELEKALVEWIKRMRRKGFPVT 23 (66)
T ss_dssp HHHHHHHHHHHHHHCGCT---S
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 7899999999999977776653
No 25
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=59.13 E-value=6.1 Score=25.54 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCC-CCCCcchHHHHhhhHHHHHHHHH
Q psy17185 10 DKEAQAWIETVTGQ-KFPAGVLYEDAIKDGQILCHLIN 46 (121)
Q Consensus 10 e~~~~~WIe~vl~~-~~~~~~~~~~~LrDGviLC~L~N 46 (121)
++.|++||+-+..+ ++++ ++...-.||.-||.|-.
T Consensus 15 ~~~V~~WL~w~~~ef~L~~--~~~~F~mnG~~LC~ls~ 50 (76)
T cd08532 15 PANVQKWLLWTEHQYRLPP--PPRCFELNGKDLCALSE 50 (76)
T ss_pred HHHHHHHHHHHHHHhCCCC--chhcCCCCHHHHHcCCH
Confidence 67899999987664 5665 46666899999998754
No 26
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=58.89 E-value=8.3 Score=23.94 Aligned_cols=36 Identities=19% Similarity=0.482 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCC-CCCCcchHHHHhhhHHHHHHHHH
Q psy17185 10 DKEAQAWIETVTGQ-KFPAGVLYEDAIKDGQILCHLIN 46 (121)
Q Consensus 10 e~~~~~WIe~vl~~-~~~~~~~~~~~LrDGviLC~L~N 46 (121)
++.|.+||.-+..+ ++++ .++...-.||.-||.|-.
T Consensus 7 ~~~V~~Wl~w~~~~f~L~~-~~~~~F~m~G~~Lc~ls~ 43 (66)
T cd08203 7 KEHVLQWLEWAVKEFSLPP-IDFSKFNMNGKELCLLTK 43 (66)
T ss_pred HHHHHHHHHHHHHhcCCCC-CChhhcCCCHHHHHhCCH
Confidence 67899999987763 4554 235555889999998754
No 27
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=51.96 E-value=10 Score=23.81 Aligned_cols=37 Identities=24% Similarity=0.558 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhC-CCCCCc-chHHHHhhhHHHHHHHHH
Q psy17185 10 DKEAQAWIETVTG-QKFPAG-VLYEDAIKDGQILCHLIN 46 (121)
Q Consensus 10 e~~~~~WIe~vl~-~~~~~~-~~~~~~LrDGviLC~L~N 46 (121)
+..|.+||.-+.. -+++.. .++...-.||--||.|-.
T Consensus 7 ~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~ 45 (68)
T cd08757 7 KNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTE 45 (68)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCH
Confidence 5789999997765 345532 245556899999998754
No 28
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=51.27 E-value=8.8 Score=24.05 Aligned_cols=36 Identities=14% Similarity=0.370 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCC-CCCCcchHHHHhhhHHHHHHHHH
Q psy17185 10 DKEAQAWIETVTGQ-KFPAGVLYEDAIKDGQILCHLIN 46 (121)
Q Consensus 10 e~~~~~WIe~vl~~-~~~~~~~~~~~LrDGviLC~L~N 46 (121)
+..|.+|+.-+..+ ++++. ++...-.||--||.|-.
T Consensus 7 ~~~V~~WL~w~~~ef~L~~~-~~~~F~m~Gk~LC~ls~ 43 (66)
T cd08536 7 REHVRTWLRWVSARYQLEVV-DLDKFLMNGKGLCLMSL 43 (66)
T ss_pred HHHHHHHHHHHHHHhCCCCC-CccccCCCHHHHHcCCH
Confidence 57889999987664 44442 23333579999998754
No 29
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=51.23 E-value=12 Score=23.67 Aligned_cols=36 Identities=17% Similarity=0.429 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCC-CCCCcchHHHHhhhHHHHHHHHH
Q psy17185 10 DKEAQAWIETVTGQ-KFPAGVLYEDAIKDGQILCHLIN 46 (121)
Q Consensus 10 e~~~~~WIe~vl~~-~~~~~~~~~~~LrDGviLC~L~N 46 (121)
++.|.+|+.-+..+ ++++ .++...-.||--||.|-.
T Consensus 8 ~~~V~~WL~wa~~ef~L~~-i~~~~F~mnGk~LC~ls~ 44 (68)
T cd08535 8 RDDVLQWLRWAENEFSLPP-IDSNTFEMNGKALCLLTK 44 (68)
T ss_pred HHHHHHHHHHHHHhcCCCC-CChhccCCCHHHHhcCCH
Confidence 67899999876653 4444 245556799999998764
No 30
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=50.72 E-value=10 Score=24.66 Aligned_cols=40 Identities=15% Similarity=0.443 Sum_probs=27.3
Q ss_pred CHHH--HHHHHHHHHHHhCC-CCCCcchHHHHhhhHHHHHHHHH
Q psy17185 6 NPEQ--DKEAQAWIETVTGQ-KFPAGVLYEDAIKDGQILCHLIN 46 (121)
Q Consensus 6 d~~~--e~~~~~WIe~vl~~-~~~~~~~~~~~LrDGviLC~L~N 46 (121)
||.. ...|.+||+-+..+ ++++ .++...-.||.-||.|-.
T Consensus 16 dP~~Wt~~~V~~Wl~w~~~ef~L~~-~~~~~f~m~G~~Lc~ls~ 58 (82)
T smart00251 16 DPQLWTEDHVLEWLEWAVKEFSLSP-IDFSKFDMSGKELCSMSK 58 (82)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCC-CCcccCCCCHHHHHcCCH
Confidence 4444 67899999988764 3333 235445789999998754
No 31
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=48.28 E-value=13 Score=23.82 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCC-CCCCcchHHHH-hhhHHHHHHHHH
Q psy17185 10 DKEAQAWIETVTGQ-KFPAGVLYEDA-IKDGQILCHLIN 46 (121)
Q Consensus 10 e~~~~~WIe~vl~~-~~~~~~~~~~~-LrDGviLC~L~N 46 (121)
++.|++|+.=+..+ ++++ .++... -.||.-||.|-.
T Consensus 10 ~~~V~~WL~Wa~~ef~L~~-i~~~~F~~m~Gk~LC~lt~ 47 (75)
T cd08531 10 REHVRQWLEWAVKEYGLQD-VDVSRFQNIDGKELCKMTK 47 (75)
T ss_pred HHHHHHHHHHHHHHcCCCC-CChhhccCCChHHHHcCCH
Confidence 67899999977664 4543 345565 789999998753
No 32
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=47.72 E-value=19 Score=23.94 Aligned_cols=40 Identities=18% Similarity=0.329 Sum_probs=27.3
Q ss_pred CHHH--HHHHHHHHHHHhCC-CCCCcchHHHHhhhHHHHHHHHH
Q psy17185 6 NPEQ--DKEAQAWIETVTGQ-KFPAGVLYEDAIKDGQILCHLIN 46 (121)
Q Consensus 6 d~~~--e~~~~~WIe~vl~~-~~~~~~~~~~~LrDGviLC~L~N 46 (121)
||.. +..|.+|+.-+..+ ++++- ++...-.||.-||.|-.
T Consensus 18 DP~~Wt~~~V~~WL~Wa~~ef~L~~v-~~~~F~m~Gk~LC~Ls~ 60 (89)
T cd08534 18 DPMEWTEDQVLHWVVWAVKEFSLTDI-DLSDWNITGRELCSLTQ 60 (89)
T ss_pred ChHHcCHHHHHHHHHHHHHHcCCCCC-ChhhcCCCHHHHhcCCH
Confidence 5544 57899999977664 45432 34555679999998754
No 33
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=39.97 E-value=13 Score=24.03 Aligned_cols=37 Identities=22% Similarity=0.533 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCC-CCCCcchHHHHhhhHHHHHHHHHh
Q psy17185 10 DKEAQAWIETVTGQ-KFPAGVLYEDAIKDGQILCHLINK 47 (121)
Q Consensus 10 e~~~~~WIe~vl~~-~~~~~~~~~~~LrDGviLC~L~N~ 47 (121)
..+|.+||+-+..+ +++. .++...=.||.-||.|-..
T Consensus 22 ~~~V~~Wl~w~~~~f~l~~-~~~~~f~~~G~~Lc~lt~e 59 (84)
T PF02198_consen 22 KEDVLQWLRWVVREFDLPA-IDFSRFNMNGRELCSLTKE 59 (84)
T ss_dssp HHHHHHHHHHHHHHTT-SS-CHGGGGTS-HHHHHHSHHH
T ss_pred HHHHHHHHHHHHHhcCCCc-CchhccCCCHHHHHHcCHH
Confidence 68899999866553 3332 2344446789999987643
No 34
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=39.67 E-value=24 Score=23.05 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=16.9
Q ss_pred HHHHHHhhh-cCCCCCCcccCC
Q psy17185 90 IHSGTGSHL-TQPEWGREKPAA 110 (121)
Q Consensus 90 L~aL~~~a~-~~~~~~gp~~~~ 110 (121)
|+.|.+.++ .+|+|.||.+-.
T Consensus 6 L~~Ln~~v~LE~p~y~gp~L~~ 27 (93)
T PF08368_consen 6 LLQLNAAVQLECPEYQGPRLPP 27 (93)
T ss_pred HHHHHHHHhhcCCCCcCCCCCh
Confidence 667777666 799999999874
No 35
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=39.02 E-value=26 Score=23.49 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=26.4
Q ss_pred CHHH--HHHHHHHHHHHhCC-CCCCcchHHHHh-hhHHHHHHHHH
Q psy17185 6 NPEQ--DKEAQAWIETVTGQ-KFPAGVLYEDAI-KDGQILCHLIN 46 (121)
Q Consensus 6 d~~~--e~~~~~WIe~vl~~-~~~~~~~~~~~L-rDGviLC~L~N 46 (121)
||.. ++.|++|+.=+..+ ++++ .++...- .||.-||.|-.
T Consensus 16 DP~~Wt~~hV~~WL~Wa~~ef~L~~-vd~~~F~~m~Gk~LC~Lsk 59 (91)
T cd08541 16 DPTLWTQEHVRQWLEWAIKEYGLME-IDTSFFQNMDGKELCKMNK 59 (91)
T ss_pred ChhhcCHHHHHHHHHHHHHHcCCCC-CChhhccCCCHHHHHhCCH
Confidence 4444 67889999876664 4543 3454553 69999998753
No 36
>KOG0035|consensus
Probab=37.00 E-value=34 Score=31.65 Aligned_cols=48 Identities=21% Similarity=0.403 Sum_probs=38.1
Q ss_pred chHHHHhhhHHHHHHHHHhhcCCCcccccCCCCchhHHHHHHHHHHhhh
Q psy17185 29 VLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA 77 (121)
Q Consensus 29 ~~~~~~LrDGviLC~L~N~l~P~~v~ki~~~~~~f~~~eNI~~FL~ac~ 77 (121)
.+|-.+-+||..+|.+++..+|..|..+... +.-.+++|++.-...+.
T Consensus 164 ~nF~~sw~~gl~f~A~ih~~Rpdli~~y~~l-t~~~~~~n~~~A~~iAe 211 (890)
T KOG0035|consen 164 QNFHTSWKDGLAFCALIHRHRPDLIDQYDKL-TKQDPVENLNLAFDIAE 211 (890)
T ss_pred ccceecccchHHHHHHHHhcChhhhhhhhhc-CccchhHHhhhhhhhhh
Confidence 4799999999999999999999999855432 22357899987777766
No 37
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=36.28 E-value=25 Score=22.83 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCC-CCCC-cchHHHHhhhHHHHHHHHH
Q psy17185 10 DKEAQAWIETVTGQ-KFPA-GVLYEDAIKDGQILCHLIN 46 (121)
Q Consensus 10 e~~~~~WIe~vl~~-~~~~-~~~~~~~LrDGviLC~L~N 46 (121)
+..|++||.-+..+ ++++ +.+|...-.||.-||.+..
T Consensus 12 ~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~ 50 (78)
T cd08538 12 KRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQ 50 (78)
T ss_pred HHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCH
Confidence 57899999987665 4554 2467777999999998764
No 38
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=36.18 E-value=19 Score=22.88 Aligned_cols=36 Identities=17% Similarity=0.393 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCC-CCCCcchHHHHhhhHHHHHHHHH
Q psy17185 10 DKEAQAWIETVTGQ-KFPAGVLYEDAIKDGQILCHLIN 46 (121)
Q Consensus 10 e~~~~~WIe~vl~~-~~~~~~~~~~~LrDGviLC~L~N 46 (121)
+..|++|+.=+..+ +++. .++...-.||.-||.|-.
T Consensus 9 ~~~V~~WL~Wa~~ef~L~~-v~~~~F~m~Gk~LC~ls~ 45 (71)
T cd08533 9 ETHVRQWLLWAVNEFSLEG-VNFQKFCMSGRDLCALGK 45 (71)
T ss_pred HHHHHHHHHHHHHHcCCCC-CCcccCCCCHHHHHcCCH
Confidence 67889999976653 4443 234555889999998754
No 39
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=35.71 E-value=25 Score=22.60 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCC-CCCCcchHHHH-hhhHHHHHHHHH
Q psy17185 10 DKEAQAWIETVTGQ-KFPAGVLYEDA-IKDGQILCHLIN 46 (121)
Q Consensus 10 e~~~~~WIe~vl~~-~~~~~~~~~~~-LrDGviLC~L~N 46 (121)
++.|++|+.=+..+ ++++- ++... -.||.-||.|-.
T Consensus 10 ~~~V~~WL~Wa~~ef~L~~~-~~~~F~~m~Gk~LC~Lsk 47 (75)
T cd08540 10 TDHVRQWLEWAVKEYGLPDV-DVLLFQNIDGKELCKMTK 47 (75)
T ss_pred HHHHHHHHHHHHHHhCCCCC-CcccccCCCHHHHHhCCH
Confidence 67899999976664 45442 34344 369999998754
No 40
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=32.96 E-value=20 Score=23.83 Aligned_cols=40 Identities=18% Similarity=0.430 Sum_probs=25.2
Q ss_pred CHHH--HHHHHHHHHHHhCC-CCCCcchHHHHhhhHHHHHHHHH
Q psy17185 6 NPEQ--DKEAQAWIETVTGQ-KFPAGVLYEDAIKDGQILCHLIN 46 (121)
Q Consensus 6 d~~~--e~~~~~WIe~vl~~-~~~~~~~~~~~LrDGviLC~L~N 46 (121)
||.. +..|+.|++=+..+ +++.- ++...-.||.-||.|-.
T Consensus 18 DP~~Wt~~~V~~WL~Wa~~ef~L~~i-~~~~F~m~Gk~LC~Ls~ 60 (88)
T cd08542 18 DPRQWTETHVRDWVMWAVNEFSLKGV-DFQKFCMNGAALCALGK 60 (88)
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCCC-CcccCCCCHHHHHcCCH
Confidence 4444 57889999866543 34322 33444589999997753
No 41
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=31.87 E-value=1.1e+02 Score=17.97 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCc
Q psy17185 6 NPEQDKEAQAWIETVTGQKFPAG 28 (121)
Q Consensus 6 d~~~e~~~~~WIe~vl~~~~~~~ 28 (121)
.++.|+.+.+||.......++..
T Consensus 4 ~~~~E~~L~~wi~~~~~~g~~it 26 (66)
T smart00674 4 YALLEKALYEWILRQEALGIPIS 26 (66)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC
Confidence 46789999999999877777654
No 42
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=28.13 E-value=87 Score=16.97 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC----cchHHHHhhh
Q psy17185 5 RNPEQDKEAQAWIETVTGQKFPA----GVLYEDAIKD 37 (121)
Q Consensus 5 ~d~~~e~~~~~WIe~vl~~~~~~----~~~~~~~LrD 37 (121)
||.-...++++|+++. |...+. .+++.+.+|+
T Consensus 1 fdtWs~~~L~~wL~~~-gi~~~~~~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 1 FDTWSDSDLKSWLKSH-GIPVPKSAKTRDELLKLAKK 36 (38)
T ss_pred CCCCCHHHHHHHHHHc-CCCCCCCCCCHHHHHHHHHH
Confidence 4445578999999994 444443 2345554443
No 43
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=27.36 E-value=29 Score=23.12 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=25.1
Q ss_pred CHHH--HHHHHHHHHHHhCC-CCCCcchHHHHhhhHHHHHHHHH
Q psy17185 6 NPEQ--DKEAQAWIETVTGQ-KFPAGVLYEDAIKDGQILCHLIN 46 (121)
Q Consensus 6 d~~~--e~~~~~WIe~vl~~-~~~~~~~~~~~LrDGviLC~L~N 46 (121)
||.. +..|+.|+.=+..+ ++++- ++...-.||.-||.|-.
T Consensus 18 DP~~Wt~~~V~~WL~Wa~~ef~L~~i-~~~~F~m~Gk~LC~Ls~ 60 (89)
T cd08543 18 NPWLWTEQQVCQWLLWATNEFSLVNV-NFQQFGMNGQELCNLGK 60 (89)
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCCC-CcccCCCChHHHHcCCH
Confidence 4444 57889998865443 34432 23344689999998753
No 44
>PF11436 DUF3199: Protein of unknown function (DUF3199); InterPro: IPR013514 This entry represents the hypothetical protein YqbG from Bacillus species, as well as related proteins from other bacteria. YqbG exists as a monomer, consisting of four alpha-helices with a right-handed twist, arranged in a left-handed superhelix [].; PDB: 1XN8_A 1ZTS_A.
Probab=25.17 E-value=2e+02 Score=20.41 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCCCCCcch--HHHHhhhHHHHHHHHHhhc
Q psy17185 10 DKEAQAWIETVTGQKFPAGVL--YEDAIKDGQILCHLINKLK 49 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~~~~~~--~~~~LrDGviLC~L~N~l~ 49 (121)
.-++..||..++|.+|.+.+. +.+.+| +.+++|+.-+.
T Consensus 29 I~eAe~~I~~~~~~~F~~~~~~p~pe~v~--lA~~kLAqy~A 68 (124)
T PF11436_consen 29 IIEAEAEIFRITGHDFSDEDYKPLPEKVR--LALLKLAQYFA 68 (124)
T ss_dssp HHHHHHHHHHHHT-----CCG----HHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccccChHHHH--HHHHHHHHHHH
Confidence 346677999999999976432 666666 67788887653
No 45
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=24.07 E-value=54 Score=18.05 Aligned_cols=11 Identities=27% Similarity=0.223 Sum_probs=5.0
Q ss_pred hHHHHHHHHHH
Q psy17185 64 KFMENINKGLT 74 (121)
Q Consensus 64 ~~~eNI~~FL~ 74 (121)
+-.|||+.|.+
T Consensus 4 q~~eNidLf~~ 14 (35)
T PF12579_consen 4 QLQENIDLFCQ 14 (35)
T ss_pred chhhhHHHHHH
Confidence 33445544444
No 46
>PF09564 RE_NgoBV: NgoBV restriction endonuclease; InterPro: IPR019064 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the restriction endonuclease NgoBV, which recognises the sequence GGNNCC, but whose cleavage site is unknown.
Probab=22.77 E-value=74 Score=24.85 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHhhhhccceecCCCh
Q psy17185 63 FKFMENINKGLTFIAITPQVFSNDSI 88 (121)
Q Consensus 63 f~~~eNI~~FL~ac~~~~DLfe~kn~ 88 (121)
-..++|...|++|..+|.++|-+.+.
T Consensus 182 ~~~Fes~edfI~Ai~et~~~~p~t~~ 207 (240)
T PF09564_consen 182 ASVFESLEDFISAIYETVYQNPGTRF 207 (240)
T ss_pred chhhhhHHHHHHHHHHHHHhCcccch
Confidence 35788999999999999999999766
No 47
>PRK10941 hypothetical protein; Provisional
Probab=21.62 E-value=1.6e+02 Score=23.27 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhc
Q psy17185 10 DKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLK 49 (121)
Q Consensus 10 e~~~~~WIe~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~ 49 (121)
..++..|++...|..-.-..++.+...+-.||-++.+.+.
T Consensus 149 ~~~l~~~L~~~~g~~~~l~~~~L~~a~~~~il~Rml~nLK 188 (269)
T PRK10941 149 EHTLEVWLKGNISPSAELFNEDLDEADNIEVIRKLLDTLK 188 (269)
T ss_pred HHHHHHHHHhhcCCcccCCHHHcCCCCHHHHHHHHHHHHH
Confidence 4678889987776532211245566666667777777654
No 48
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=21.23 E-value=96 Score=17.84 Aligned_cols=14 Identities=7% Similarity=-0.014 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHhhh
Q psy17185 64 KFMENINKGLTFIA 77 (121)
Q Consensus 64 ~~~eNI~~FL~ac~ 77 (121)
.++.||..|++-++
T Consensus 3 eQi~~I~~~I~qAk 16 (42)
T PF11464_consen 3 EQINIIESYIKQAK 16 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999999998
No 49
>PF12247 MKT1_N: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022040 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length. There is a single completely conserved residue P that may be functionally important. MKT1 is required for maintenance of K2 toxin above 30 degrees C in strains with the L-A-HN variant of the L-A double-stranded RNA virus of Saccharomyces cerevisiae. MKT1 is a 93 kDa protein with serine-rich regions and the retroviral protease signature, DTG. This family is the N-terminal region of MKT1.
Probab=21.00 E-value=62 Score=21.43 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=30.8
Q ss_pred HHHHhCCCCCCcchHHHHhhhHHHHHHHHHhhcCCCcc
Q psy17185 17 IETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVA 54 (121)
Q Consensus 17 Ie~vl~~~~~~~~~~~~~LrDGviLC~L~N~l~P~~v~ 54 (121)
+.+++|..+|+ +++-.+.-|++-.+++|.|.-|.+.
T Consensus 4 ~h~~iG~rLP~--elYfyls~GLi~~~ll~~lt~G~~~ 39 (90)
T PF12247_consen 4 LHEVIGQRLPD--ELYFYLSIGLISPRLLNALTSGEWI 39 (90)
T ss_pred HHHhhccCCCH--HHHHHHHccccChHHHhHhccceEe
Confidence 35678889987 7899999999999999999887663
No 50
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=20.78 E-value=21 Score=21.13 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCCCCc-chHHHHhhhHHHHHHH
Q psy17185 9 QDKEAQAWIETVTGQKFPAG-VLYEDAIKDGQILCHL 44 (121)
Q Consensus 9 ~e~~~~~WIe~vl~~~~~~~-~~~~~~LrDGviLC~L 44 (121)
..+++.+|++++ .++.- +.|....-||..|+.|
T Consensus 4 ~~~~V~~WL~~~---~l~~y~~~F~~~~i~g~~L~~l 37 (64)
T PF00536_consen 4 SVEDVSEWLKSL---GLEQYAENFEKNYIDGEDLLSL 37 (64)
T ss_dssp SHHHHHHHHHHT---TGGGGHHHHHHTTSSHHHHTTS
T ss_pred CHHHHHHHHHHC---CCHHHHHHHHcCCchHHHHHhc
Confidence 357899999996 33321 2466666677776654
Done!