RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17185
(121 letters)
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 93.6 bits (233), Expect = 2e-26
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 7 PEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFM 66
P+ +++ + WIE TG++ + D +KDG ILC LINKL+PGSV K+N + +
Sbjct: 2 PQTERQLRVWIEGATGRRIGDN--FMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKL 59
Query: 67 ENINKGLTFI 76
ENI L I
Sbjct: 60 ENIGNFLRAI 69
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 136
Score = 90.3 bits (224), Expect = 1e-24
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 1 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSG 60
+A K + ++++E + WIE VTG++ + D +KDG ILC INKL+PGSV KIN S
Sbjct: 10 LAQKYDHQREQELREWIEGVTGRRIGNN--FMDGLKDGIILCEFINKLQPGSVKKINEST 67
Query: 61 GQFKFMENINKGLTFI 76
+ +ENI + I
Sbjct: 68 QNWHQLENIGNFIKAI 83
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 203
Score = 90.0 bits (223), Expect = 6e-24
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 1 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKIN-SS 59
+ A + EA+ WIE G +E ++++G +L L+ K +P + KI S+
Sbjct: 48 LQAYDYLCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSN 107
Query: 60 GGQFKFMENINKGLTFI 76
QF+ +NINK L FI
Sbjct: 108 ELQFRHSDNINKFLDFI 124
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices,
bundle, protein binding; 2.21A {Schizosaccharomyces
pombe} SCOP: a.40.1.1
Length = 159
Score = 85.3 bits (211), Expect = 2e-22
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 11 KEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKIN-SSGGQFKFMENI 69
EA+ WIE G +E ++++G +L L+ K +P + KI S+ QF+ +NI
Sbjct: 14 DEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNI 73
Query: 70 NKGLTFI 76
NK L FI
Sbjct: 74 NKFLDFI 80
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix,
structural genomics, NPPSFA, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens}
Length = 146
Score = 82.6 bits (204), Expect = 1e-21
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 1 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSG 60
+ +K +P+++ E + WIE +TG ++ +KDG ILC L+NKL+PGSV KIN S
Sbjct: 10 LLSKYDPQKEAELRTWIEGLTGLSIGPD--FQKGLKDGTILCTLMNKLQPGSVPKINRSM 67
Query: 61 GQFKFMENINKGLTFI 76
+ +EN++ + +
Sbjct: 68 QNWHQLENLSNFIKAM 83
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens}
Length = 121
Score = 81.5 bits (201), Expect = 2e-21
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 4 KRNPEQDKEAQAWIETVTGQKFPAGVL------YEDAIKDGQILCHLINKLKPGSVAKIN 57
+++ W+ ++ + P + + ++K+G +LC LIN+L PGSV K
Sbjct: 2 SSGSSGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFC 61
Query: 58 -SSGGQFKFMENINKGLTFI 76
+ + NIN L
Sbjct: 62 LDPQTEADCINNINDFLKGC 81
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Length = 144
Score = 81.5 bits (201), Expect = 3e-21
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 2 AAKRNPEQDKEAQAWIETVTGQKFPAGVL----YEDAIKDGQILCHLINKLKPGSVAKI- 56
+ E ++ WI G ++ +K+G IL L+N L P +
Sbjct: 3 SGSSGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVK 62
Query: 57 ---NSSGGQFKFMENINKGLTFI 76
N FK ME + + L
Sbjct: 63 VPENPPSMVFKQMEQVAQFLKAA 85
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo
sapiens}
Length = 190
Score = 77.7 bits (191), Expect = 3e-19
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 11 KEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVA----------KINSSG 60
+EA+ W+E G+ P E+ +++G L L N P V+ + ++G
Sbjct: 28 EEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATG 87
Query: 61 GQFKFMENINKGLTFI 76
F+ +N+ + L +
Sbjct: 88 LHFRHTDNVIQWLNAM 103
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, protein binding; 2.50A {Homo sapiens}
Length = 193
Score = 76.6 bits (188), Expect = 9e-19
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 1 IAAKRNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVA------ 54
+A + +EA+ W+E G+ P E+ +++G L L N P V+
Sbjct: 41 VAYEYLCHL-EEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYD 99
Query: 55 ----KINSSGGQFKFMENINKGLTFI 76
+ ++G F+ +N+ + L +
Sbjct: 100 REQTRYKATGLHFRHTDNVIQWLNAM 125
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Length = 155
Score = 73.9 bits (181), Expect = 4e-18
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 1 IAAKRNPEQDKEAQAWIETVTGQKF----PAGVLYEDAIKDGQILCHLINKLKP---GSV 53
I + + + ++ WI T + P +++ +KDG +LC LIN L P V
Sbjct: 10 IEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPV 69
Query: 54 AKINSSGGQFKFMENINKGLTFI 76
KI +S FK ME I++ L
Sbjct: 70 KKIQASTMAFKQMEQISQFLQAA 92
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics,
northeast structural genomics consortiu PSI-biology,
calponin-homology domain; NMR {Homo sapiens}
Length = 126
Score = 70.4 bits (172), Expect = 4e-17
Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 8 EQDKEAQAWIETVTGQKFPAGVL------YEDAIKDGQILCHLINKLKPGSVAKIN-SSG 60
++ W+ T+ + P + + ++KDG +LC L+ +L PG++ K+
Sbjct: 12 NSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPR 71
Query: 61 GQFKFMENINKGLTFIAITPQVF 83
+ + + NI + L + ++
Sbjct: 72 SESECLSNIREFLRGCGASLRLE 94
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase,
all alpha, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 129
Score = 44.0 bits (104), Expect = 7e-07
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSG-GQFKFMENINKGLTFI 76
L +D + DG +L +I + + IN + + +ENI+ L F+
Sbjct: 43 LQQD-VTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFL 89
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 43.0 bits (101), Expect = 3e-06
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKF--MENINKGLTFI-AITPQVFSND 86
L D + DG L L+ L + + F+ +EN++ L F+ + ++ S D
Sbjct: 43 LQTD-LSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVSID 101
Query: 87 SITIHSGTGSHLTQPEW 103
S I G + W
Sbjct: 102 SKAIVDGNLKLILGLVW 118
Score = 27.6 bits (61), Expect = 0.83
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 36 KDGQILCHLINKLKPGSV 53
+DG+ L L++ PG
Sbjct: 169 QDGKALGALVDSCAPGLC 186
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 43.0 bits (101), Expect = 4e-06
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAK--INSSGG-QFKFMENINKGLTFI 76
L++ + DG +LC +IN P ++ + IN F EN+N L
Sbjct: 56 LFKA-VGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSA 104
Score = 27.2 bits (60), Expect = 1.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 35 IKDGQILCHLINKLKPG 51
IKD + HL+N++ P
Sbjct: 196 IKDSKAYFHLLNQIAPK 212
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 42.0 bits (98), Expect = 1e-05
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSV----AKINSSGGQFKFMENINKGLTFI 76
++ED +++G IL +++K+ P SV A F+ +EN N+ +
Sbjct: 297 VFED-VRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIG 346
Score = 41.6 bits (97), Expect = 2e-05
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQ----FKFMENINKGLTFI 76
LYE +KDG +LC LIN PG++ + + + ++ EN L
Sbjct: 39 LYEL-VKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSA 88
Score = 27.7 bits (61), Expect = 1.0
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 35 IKDGQILCHLINKLKPGSV 53
+KD Q L+N L P
Sbjct: 181 LKDAQAYAFLLNVLAPEHC 199
Score = 26.2 bits (57), Expect = 3.5
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 35 IKDGQILCHLINKLKPGSV 53
+ G +L+ ++P V
Sbjct: 427 LSSGLFFLNLLWAVEPRVV 445
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 40.8 bits (95), Expect = 3e-05
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKF--MENINKGLTFI 76
L D + DG L L+ L + + ++ F+ +EN++ L F+
Sbjct: 70 LQTD-LSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFL 117
Score = 27.7 bits (61), Expect = 0.87
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 35 IKDGQILCHLINKLKPGSV 53
+ G+ L L++ PG
Sbjct: 195 WQSGRALGALVDSCAPGLC 213
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 39.3 bits (91), Expect = 1e-04
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 5 RNPEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSV--------AKI 56
+ + W+ ++ P+ + + ++DG IL +K+ P +V
Sbjct: 282 EGEREARVFTLWLNSLDVT--PSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPAS 339
Query: 57 NSSGGQFKFMENINKGLTFI 76
+FK +EN N +
Sbjct: 340 GDEMMRFKAVENCNYAVDLG 359
Score = 38.9 bits (90), Expect = 1e-04
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 18/88 (20%)
Query: 6 NPEQDKEAQAWI------ETVTGQKFPAGV----LYEDAIKDGQILCHLINKLKPGSVAK 55
N E+ +E I + G + P ++ KDG IL LIN P ++ +
Sbjct: 10 NEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQ-CKDGLILSKLINDSVPDTIDE 68
Query: 56 INSSGGQ-------FKFMENINKGLTFI 76
+ + FK +EN N +
Sbjct: 69 RVLNKQRNNKPLDNFKCIENNNVVINSA 96
Score = 27.8 bits (61), Expect = 0.88
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 33 DAIKDGQILCHLINKLKPGSV 53
+I G + +++ +K V
Sbjct: 436 PSISTGVFVLDVLHGIKSEYV 456
Score = 25.5 bits (55), Expect = 6.7
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 35 IKDGQILCHLINKLKPGSV 53
+ DG+ L+N+L P
Sbjct: 190 VSDGENYTVLLNQLAPELC 208
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology
domain, pleckst homology domain, C1 domain,
guanine-nucleotide releasing FA metal-binding; 2.73A
{Homo sapiens} PDB: 2d86_A
Length = 587
Score = 38.9 bits (90), Expect = 1e-04
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 7 PEQDKEAQAWIE---------TVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSV---- 53
E ++ W+ VT + L A++DG +LC L+N L P ++
Sbjct: 4 KELWRQCTHWLIQCRVLPPSHRVTWEGAQVCELA-QALRDGVLLCQLLNNLLPHAINLRE 62
Query: 54 AKINSSGGQFKFMENINK 71
+ QF ++NI
Sbjct: 63 VNLRPQMSQFLCLKNIRT 80
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 37.3 bits (86), Expect = 4e-04
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFI-AITPQVFSNDSI 88
LYED ++DG L L+ L S+ + +F ++N+ L ++ ++ + +
Sbjct: 40 LYED-LRDGHNLISLLEVLSGDSLPREKGRM-RFHKLQNVQIALDYLRHRQVKLVNIRND 97
Query: 89 TIHSGTGSHLTQPEW 103
I G W
Sbjct: 98 DIADGNPKLTLGLIW 112
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 36.5 bits (84), Expect = 8e-04
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFI 76
L+ D ++DG+ L L+ L + K S + + N+NK L +
Sbjct: 40 LFSD-LQDGRRLLDLLEGLTGQKLPKEKGST-RVHALNNVNKALRVL 84
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 35.5 bits (81), Expect = 0.002
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFI 76
LYED ++DG L L+ L S+ + +F ++N+ L ++
Sbjct: 96 LYED-LRDGHNLISLLEVLSGDSLPREKGRM-RFHKLQNVQIALDYL 140
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 34.5 bits (79), Expect = 0.003
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFI 76
+ ED ++G L L+ + + + + +F + N+NK L FI
Sbjct: 50 IEED-FRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFI 95
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 34.9 bits (79), Expect = 0.004
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIAITP-QVFSNDSI 88
+ ED +DG L L+ + +AK + + N+NK L FIA ++ S +
Sbjct: 31 IEED-FRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAE 89
Query: 89 TIHSGTGSHLTQPEW 103
I G W
Sbjct: 90 EIVDGNVKMTLGMIW 104
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction,
alternative splicing, calponin homology domain,
actin-binding, cell membrane; 1.05A {Homo sapiens} PDB:
2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Length = 131
Score = 29.4 bits (66), Expect = 0.16
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSV--AKINSSG-GQFKFMENINKGLTFIA 77
L DG L L+ L+ V + + + N++ +
Sbjct: 45 LETQ-FADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQ 94
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain,
NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum
polycephalum}
Length = 243
Score = 28.0 bits (63), Expect = 0.63
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 45 INKLKPGSVAKINSSGGQFKFMENINKGLTFIA----ITP 80
I+ L PG ++ GQF + N+ K + IA ITP
Sbjct: 91 IDHLNPGDFLQVRGPKGQFDYKPNMVKEMGMIAGGTGITP 130
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 27.8 bits (61), Expect = 0.90
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 7/72 (9%)
Query: 51 GSVAKINSSGGQFK--FMENINKGLTFIAITP---QVFSNDSITIHSGTGSHLTQPEWGR 105
+ KI+ +G + + I + A+ Q + +G SH+ +
Sbjct: 540 QMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVK--G 597
Query: 106 EKPAACDCPDGH 117
+ C CP
Sbjct: 598 DGTTRCSCPMHL 609
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 27.5 bits (60), Expect = 1.3
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 51 GSVAKINSSGGQFK--FMENINKGLTFIAITPQ--VFSNDSITIHSGTGSHLTQPEWGRE 106
S+ N G+ + ++ + + PQ + ++G +HL P
Sbjct: 266 KSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLP---SG 322
Query: 107 KPAACDCPDGH 117
+ C CP G
Sbjct: 323 QNYTCACPTGF 333
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family,
phosphinothricin, methionine sulfone, methionine
sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A
2j8n_A 2j8r_A* 1yvo_A
Length = 172
Score = 26.4 bits (59), Expect = 2.2
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 12 EAQAWIETVTGQKFPAGVLYEDAIKDGQIL 41
QAW + Q +P V + G++L
Sbjct: 40 NRQAWFDARARQGYPILVASDA---AGEVL 66
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB:
2d85_A
Length = 124
Score = 26.1 bits (57), Expect = 2.3
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 32 EDAIKDGQILCHLINKLKPGSV 53
+ I + LI+ ++PG +
Sbjct: 34 DKTISSSLAVVDLIDAIQPGCI 55
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD,
iron transpor; HET: FAD HEM; 2.19A {Escherichia coli}
SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Length = 396
Score = 26.2 bits (58), Expect = 2.9
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 26 PAGVLYEDAIK---DGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA----I 78
P G Y A+K GQ+ L N G V K+ + G F + +T I+
Sbjct: 212 PDGKGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISAGVGQ 271
Query: 79 TP 80
TP
Sbjct: 272 TP 273
>2jlm_A Putative phosphinothricin N-acetyltransferase; methionine
sulfoximine; 2.35A {Acinetobacter baylyi}
Length = 182
Score = 25.6 bits (57), Expect = 3.6
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 3/30 (10%)
Query: 12 EAQAWIETVTGQKFPAGVLYEDAIKDGQIL 41
AW T FP + GQ+L
Sbjct: 48 SMAAWFATKRQNNFPIIGAVNE---VGQLL 74
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 25.8 bits (57), Expect = 3.9
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 10 DKEAQAWIETVTGQKFPAGVLYEDAIK 36
D E Q + + + PAG D
Sbjct: 301 DIEFQDFFDRLNAGLPPAGPTSWDGYL 327
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta
sheet, helix-FLA five-stranded parallel beta sheet,
lipid binding protein; HET: HEM FAD DGG; 1.75A
{Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Length = 403
Score = 25.9 bits (57), Expect = 4.3
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 37 DGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA----ITP 80
G + L + + G K+ + G F + + I+ +TP
Sbjct: 233 PGYVSNLLHDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTP 280
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase
superfami oxidoreductase; 2.20A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1
Length = 232
Score = 25.6 bits (57), Expect = 5.0
Identities = 3/35 (8%), Positives = 15/35 (42%)
Query: 43 HLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA 77
+++++ ++ G+ ++ + + IA
Sbjct: 75 AVMDRILKDHQIVVDIPHGEAWLRDDEERPMILIA 109
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein,
glutamate receptor, L-glutamate; HET: GLU; 1.5A
{Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Length = 314
Score = 25.4 bits (56), Expect = 6.0
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 38 GQILCHLINKLKPGSVAKINSSGGQFKFMENIN 70
+ L+N G A S+GG + NIN
Sbjct: 36 ATGIAKLVNDANVGIRANARSTGG---SVANIN 65
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 25.0 bits (55), Expect = 8.7
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 10 DKEAQAWIETVTGQKFPAGVLYEDAIK 36
D E Q +I+++ + +G D
Sbjct: 281 DVEIQDFIDSIQKKGEVSGPTAWDGYI 307
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.412
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,903,398
Number of extensions: 99543
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 46
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.0 bits)