RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17185
(121 letters)
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 108
Score = 80.7 bits (199), Expect = 9e-22
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 7 PEQDKEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFM 66
P+ +++ + WIE TG++ + D +KDG ILC LINKL+PGSV K+N + +
Sbjct: 2 PQTERQLRVWIEGATGRRIGDN--FMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKL 59
Query: 67 ENINKGLTFI 76
ENI L I
Sbjct: 60 ENIGNFLRAI 69
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 159
Score = 70.1 bits (171), Expect = 4e-17
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 11 KEAQAWIETVTGQKFPAGVLYEDAIKDGQILCHLINKLKPGSVAKIN-SSGGQFKFMENI 69
EA+ WIE G +E ++++G +L L+ K +P + KI S+ QF+ +NI
Sbjct: 14 DEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNI 73
Query: 70 NKGLTFI 76
NK L FI
Sbjct: 74 NKFLDFI 80
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 144
Score = 67.3 bits (164), Expect = 4e-16
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 4 KRNPEQDKEAQAWIETVTGQKFPAGVL----YEDAIKDGQILCHLINKLKPGSVAKI--- 56
E ++ WI G ++ +K+G IL L+N L P +
Sbjct: 5 SSGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVP 64
Query: 57 -NSSGGQFKFMENINKGLTFI 76
N FK ME + + L
Sbjct: 65 ENPPSMVFKQMEQVAQFLKAA 85
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 500
Score = 40.0 bits (93), Expect = 2e-05
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQ----FKFMENINKGLTFIA 77
LYE +KDG +LC LIN PG++ + + + ++ EN L
Sbjct: 33 LYEL-VKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAK 83
Score = 28.4 bits (63), Expect = 0.24
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 15 AWIETVTGQKFPAGVL--YEDAIKDGQILCHLINKLKPGSV 53
W+ + + + +KD Q L+N L P
Sbjct: 153 KWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHC 193
Score = 26.9 bits (59), Expect = 0.65
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 35 IKDGQILCHLINKLKPGSV 53
+ G +L+ ++P V
Sbjct: 421 LSSGLFFLNLLWAVEPRVV 439
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 39.6 bits (92), Expect = 3e-05
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 6 NPEQDKEAQAWI------ETVTGQKFPAGV----LYEDAIKDGQILCHLINKLKPGS--- 52
N E+ +E I + G + P ++ KDG IL LIN P +
Sbjct: 2 NEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQ-CKDGLILSKLINDSVPDTIDE 60
Query: 53 --VAKINSSGGQFKF--MENINKGLTFIAITPQV-FSN-DSITIHSGTGSHLTQPEW 103
+ K ++ F +EN N + + +N + I G + W
Sbjct: 61 RVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVW 117
Score = 35.4 bits (81), Expect = 9e-04
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSV--------AKINSSGGQFKFMENINKGLTFI 76
+ + ++DG IL +K+ P +V +FK +EN N +
Sbjct: 298 FFNN-LRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLG 351
Score = 28.1 bits (62), Expect = 0.25
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 7 PEQDKEAQAWIETVTGQKFPAGVLYED----AIKDGQILCHLINKLKPGSV 53
D + AW ++ + G +I G + +++ +K V
Sbjct: 399 TLSDSDMVAWANSMAAKGGK-GSQIRSFRDPSISTGVFVLDVLHGIKSEYV 448
Score = 24.6 bits (53), Expect = 3.7
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 14 QAWIETVTGQKFPAGVL--YEDAIKDGQILCHLINKLKPGSV 53
W + + + DG+ L+N+L P
Sbjct: 159 LRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELC 200
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 38.1 bits (88), Expect = 4e-05
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA 77
LYED ++DG L L+ L S+ + +F ++N+ L ++
Sbjct: 33 LYED-LRDGHNLISLLEVLSGDSLPREKGR-MRFHKLQNVQIALDYLR 78
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 37.3 bits (86), Expect = 6e-05
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA 77
L+ D ++DG+ L L+ L + K S + + N+NK L +
Sbjct: 32 LFSD-LQDGRRLLDLLEGLTGQKLPKEKGS-TRVHALNNVNKALRVLQ 77
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin),
actin-crosslinking domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 26.9 bits (59), Expect = 0.40
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 30 LYEDAIKDGQILCHLINKLKPGSVAK 55
D IKD + HL+N++ P +
Sbjct: 33 FSAD-IKDSKAYFHLLNQIAPKGQKE 57
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 204
Score = 26.9 bits (59), Expect = 0.50
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 45 INKLKPGSVAKINSSGGQFKFMEN 68
+LKPG+V + + F+E+
Sbjct: 176 AQRLKPGAVHVLTHDSEGYSFVES 199
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 26.4 bits (58), Expect = 0.66
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 5/56 (8%)
Query: 35 IKDGQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIA----ITPQVFSND 86
DG L LI+ +P NS Q + + I + D
Sbjct: 44 WSDGLALNALIHSHRPDLF-DWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPED 98
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 25.7 bits (56), Expect = 1.2
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 35 IKDGQILCHLINKLKPGSV--AKINSSGGQFKFMENINKGLTFIAITPQVFSNDSIT 89
+DG LI+K +P + K+ S + N + +T + D
Sbjct: 30 WRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISV 86
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 206
Score = 25.5 bits (55), Expect = 1.8
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 45 INKLKPGSVAKINSSGGQFK 64
+ ++ G+V I+ G
Sbjct: 181 VYQVPAGAVMDIDLGSGTAV 200
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 24.9 bits (54), Expect = 2.2
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 35 IKDGQILCHLINKLKPG 51
+DG++ +I++ KP
Sbjct: 34 WRDGRLFNAIIHRHKPM 50
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 24.4 bits (53), Expect = 2.6
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 35 IKDGQILCHLINKLKPGSV 53
DG ++++ KP
Sbjct: 33 WTDGLAFNAVLHRHKPDLF 51
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 23.8 bits (51), Expect = 5.6
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 32 EDAIKDGQILCHLINKLKPGSV 53
+ I + LI+ ++PG +
Sbjct: 34 DKTISSSLAVVDLIDAIQPGCI 55
>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus
thermophilus [TaxId: 274]}
Length = 298
Score = 23.7 bits (50), Expect = 7.8
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 38 GQILCHLINKLKPGSVAKINSSGGQFKFMENINKGLTFIAITP 80
+ L+N G A S+GG + IN G +A+
Sbjct: 20 ATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQ 62
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 23.4 bits (49), Expect = 9.5
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 43 HLINKLKPGSVAKINSSGGQFKFMENINKGLTFIAITPQVFSNDSITIHSGTGSHLTQ 100
L++ V K +SG + + INK L+ + + ++ + S LT+
Sbjct: 231 FLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTR 288
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.412
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 470,929
Number of extensions: 19281
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 25
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.0 bits)