BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17186
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08122|TLE3_MOUSE Transducin-like enhancer protein 3 OS=Mus musculus GN=Tle3 PE=1
SV=3
Length = 772
Score = 160 bits (406), Expect = 2e-39, Method: Composition-based stats.
Identities = 83/116 (71%), Positives = 90/116 (77%), Gaps = 16/116 (13%)
Query: 1 GPPQPGQP-FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM----- 54
P QPGQP FKFTV+ESCDRIK+EF FLQAQYH+ K+E +KL EKTEMQRHYVM
Sbjct: 9 APHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMS 68
Query: 55 ----------TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100
TEIAKRLN I+ QIMPFLSQEHQQQVA A+ERAKQVTMTELNAIIG
Sbjct: 69 YGLNIEMHKQTEIAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIG 124
>sp|Q04726|TLE3_HUMAN Transducin-like enhancer protein 3 OS=Homo sapiens GN=TLE3 PE=1
SV=2
Length = 772
Score = 160 bits (406), Expect = 2e-39, Method: Composition-based stats.
Identities = 83/116 (71%), Positives = 90/116 (77%), Gaps = 16/116 (13%)
Query: 1 GPPQPGQP-FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM----- 54
P QPGQP FKFTV+ESCDRIK+EF FLQAQYH+ K+E +KL EKTEMQRHYVM
Sbjct: 9 APHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMS 68
Query: 55 ----------TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100
TEIAKRLN I+ QIMPFLSQEHQQQVA A+ERAKQVTMTELNAIIG
Sbjct: 69 YGLNIEMHKQTEIAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIG 124
>sp|Q9JIT3|TLE3_RAT Transducin-like enhancer protein 3 OS=Rattus norvegicus GN=Tle3
PE=2 SV=1
Length = 764
Score = 160 bits (405), Expect = 2e-39, Method: Composition-based stats.
Identities = 83/116 (71%), Positives = 90/116 (77%), Gaps = 16/116 (13%)
Query: 1 GPPQPGQP-FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM----- 54
P QPGQP FKFTV+ESCDRIK+EF FLQAQYH+ K+E +KL EKTEMQRHYVM
Sbjct: 9 APHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMS 68
Query: 55 ----------TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100
TEIAKRLN I+ QIMPFLSQEHQQQVA A+ERAKQVTMTELNAIIG
Sbjct: 69 YGLNIEMHKQTEIAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIG 124
>sp|Q62441|TLE4_MOUSE Transducin-like enhancer protein 4 OS=Mus musculus GN=Tle4 PE=1
SV=4
Length = 773
Score = 158 bits (399), Expect = 1e-38, Method: Composition-based stats.
Identities = 79/115 (68%), Positives = 85/115 (73%), Gaps = 15/115 (13%)
Query: 1 GPPQPGQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM------ 54
P QP QPFKFT+SESCDRIKEEF FLQAQYH+ K+E EKL EKTEMQRHYVM
Sbjct: 16 APHQPAQPFKFTISESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSY 75
Query: 55 ---------TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100
EI KRLNAI Q++PFLSQEHQQQV A+ERAKQVTM ELNAIIG
Sbjct: 76 GLNIEMHKQAEIVKRLNAICAQVIPFLSQEHQQQVVQAVERAKQVTMAELNAIIG 130
>sp|Q04727|TLE4_HUMAN Transducin-like enhancer protein 4 OS=Homo sapiens GN=TLE4 PE=1
SV=3
Length = 773
Score = 158 bits (399), Expect = 1e-38, Method: Composition-based stats.
Identities = 79/115 (68%), Positives = 85/115 (73%), Gaps = 15/115 (13%)
Query: 1 GPPQPGQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM------ 54
P QP QPFKFT+SESCDRIKEEF FLQAQYH+ K+E EKL EKTEMQRHYVM
Sbjct: 16 APHQPAQPFKFTISESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSY 75
Query: 55 ---------TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100
EI KRLNAI Q++PFLSQEHQQQV A+ERAKQVTM ELNAIIG
Sbjct: 76 GLNIEMHKQAEIVKRLNAICAQVIPFLSQEHQQQVVQAVERAKQVTMAELNAIIG 130
>sp|O13166|TLE2_DANRE Protein groucho-2 OS=Danio rerio GN=gro2 PE=1 SV=1
Length = 761
Score = 158 bits (399), Expect = 1e-38, Method: Composition-based stats.
Identities = 82/116 (70%), Positives = 89/116 (76%), Gaps = 16/116 (13%)
Query: 1 GPPQPGQP-FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM----- 54
P PGQP FKFTV+ESCDRIK+EF FLQAQYH+ K+E KL EKTEMQRHY+M
Sbjct: 9 APQTPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYIKLANEKTEMQRHYIMYYEMS 68
Query: 55 ----------TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100
TEIAKRLNAI+ QIMPFLSQEHQQQVA A+ERAKQVTMTELNAIIG
Sbjct: 69 YGLNIEMHKQTEIAKRLNAILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIG 124
>sp|Q04724|TLE1_HUMAN Transducin-like enhancer protein 1 OS=Homo sapiens GN=TLE1 PE=1
SV=2
Length = 770
Score = 152 bits (383), Expect = 8e-37, Method: Composition-based stats.
Identities = 77/110 (70%), Positives = 83/110 (75%), Gaps = 15/110 (13%)
Query: 6 GQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM----------- 54
GQPFKFT+ ES DRIKEEF FLQAQYH+ K+E EKL EKTEMQRHYVM
Sbjct: 15 GQPFKFTIPESLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIE 74
Query: 55 ----TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100
TEIAKRLN I Q++PFLSQEHQQQVA A+ERAKQVTM ELNAIIG
Sbjct: 75 MHKQTEIAKRLNTICAQVIPFLSQEHQQQVAQAVERAKQVTMAELNAIIG 124
>sp|Q62440|TLE1_MOUSE Transducin-like enhancer protein 1 OS=Mus musculus GN=Tle1 PE=1
SV=2
Length = 770
Score = 151 bits (381), Expect = 1e-36, Method: Composition-based stats.
Identities = 77/110 (70%), Positives = 83/110 (75%), Gaps = 15/110 (13%)
Query: 6 GQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM----------- 54
GQPFKFT+ ES DRIKEEF FLQAQYH+ K+E EKL EKTEMQRHYVM
Sbjct: 15 GQPFKFTIPESLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIE 74
Query: 55 ----TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100
TEIAKRLN I Q++PFLSQEHQQQVA A+ERAKQVTM ELNAIIG
Sbjct: 75 MHKQTEIAKRLNTICAQVIPFLSQEHQQQVAQAVERAKQVTMAELNAIIG 124
>sp|O42478|TLE4_XENLA Transducin-like enhancer protein 4 OS=Xenopus laevis GN=tle4 PE=1
SV=2
Length = 772
Score = 147 bits (370), Expect = 3e-35, Method: Composition-based stats.
Identities = 74/107 (69%), Positives = 80/107 (74%), Gaps = 15/107 (14%)
Query: 9 FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM-------------- 54
FKFT+SESCDRIKEEF FLQAQYH+ K+E EKL EKTEMQRHYVM
Sbjct: 25 FKFTISESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHK 84
Query: 55 -TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100
EI KRLNAI Q++PFLSQEHQQQV A+ERAKQVTM ELNAIIG
Sbjct: 85 QAEIVKRLNAICAQVIPFLSQEHQQQVVQAVERAKQVTMAELNAIIG 131
>sp|Q04725|TLE2_HUMAN Transducin-like enhancer protein 2 OS=Homo sapiens GN=TLE2 PE=1
SV=2
Length = 743
Score = 142 bits (357), Expect = 9e-34, Method: Composition-based stats.
Identities = 71/114 (62%), Positives = 82/114 (71%), Gaps = 15/114 (13%)
Query: 2 PPQPGQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM------- 54
P Q GQPFKF++ E CDRIKEEF FLQAQYH+ K+E EKL EKTEMQRHYVM
Sbjct: 10 PLQSGQPFKFSILEICDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYG 69
Query: 55 --------TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100
EI KRL+ I QI+PFL+QEHQQQV A+ERAKQVT+ ELN++IG
Sbjct: 70 LNIEMHKQAEIVKRLSGICAQIIPFLTQEHQQQVLQAVERAKQVTVGELNSLIG 123
>sp|O42469|TLE1_XENLA Transducin-like enhancer protein 1 OS=Xenopus laevis GN=esg1 PE=2
SV=1
Length = 767
Score = 134 bits (337), Expect = 2e-31, Method: Composition-based stats.
Identities = 71/115 (61%), Positives = 79/115 (68%), Gaps = 18/115 (15%)
Query: 1 GPPQPGQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM------ 54
GPPQ K T E+ DRIKEEF FLQ+QYH+ K+E EKL EKTE+QRHYVM
Sbjct: 22 GPPQS---LKLTYPETLDRIKEEFQFLQSQYHSLKLECEKLATEKTEIQRHYVMYYEMSY 78
Query: 55 ---------TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100
TEIAKRLN I Q++PFLSQEHQQQV A+ERAKQVTM ELNA IG
Sbjct: 79 GLNIEMHKQTEIAKRLNVICAQLVPFLSQEHQQQVVQAVERAKQVTMAELNAAIG 133
>sp|P16371|GROU_DROME Protein groucho OS=Drosophila melanogaster GN=gro PE=1 SV=3
Length = 730
Score = 131 bits (330), Expect = 9e-31, Method: Composition-based stats.
Identities = 68/113 (60%), Positives = 80/113 (70%), Gaps = 15/113 (13%)
Query: 1 GPPQPGQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM------ 54
G P P P KFT++++ +RIKEEFNFLQAQYH+ K+E EKL EKTEMQRHYVM
Sbjct: 12 GGPPPQGPIKFTIADTLERIKEEFNFLQAQYHSIKLECEKLSNEKTEMQRHYVMYYEMSY 71
Query: 55 ---------TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAI 98
TEIAKRLN +I Q++PFL +HQQQV A+ERAKQVTM ELN I
Sbjct: 72 GLNVEMHKQTEIAKRLNTLINQLLPFLQADHQQQVLQAVERAKQVTMQELNLI 124
>sp|Q9WVB2|TLE2_MOUSE Transducin-like enhancer protein 2 OS=Mus musculus GN=Tle2 PE=2
SV=1
Length = 767
Score = 131 bits (329), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/137 (51%), Positives = 83/137 (60%), Gaps = 38/137 (27%)
Query: 2 PPQPGQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM------- 54
P Q GQPFKF+V E CDRIKEEF FLQAQYH+ K+E EKL EKTEMQRHYVM
Sbjct: 10 PLQSGQPFKFSVLEICDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMAAPHQCP 69
Query: 55 -------------------------------TEIAKRLNAIIVQIMPFLSQEHQQQVATA 83
EI KRL+AI Q++PFL+QEHQQQV A
Sbjct: 70 QGGTSYPHWPRLSPLQYYEMSYGLNIEMHKQAEIVKRLSAICAQMVPFLTQEHQQQVLQA 129
Query: 84 LERAKQVTMTELNAIIG 100
++RAKQVT+ ELN+++G
Sbjct: 130 VDRAKQVTVGELNSLLG 146
>sp|Q08117|AES_HUMAN Amino-terminal enhancer of split OS=Homo sapiens GN=AES PE=1 SV=4
Length = 197
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 75/108 (69%), Gaps = 15/108 (13%)
Query: 7 QPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM------------ 54
Q KFT S+SCDRIK+EF LQAQYH+ K+E +KL EK+EMQRHYVM
Sbjct: 16 QQLKFTTSDSCDRIKDEFQLLQAQYHSLKLECDKLASEKSEMQRHYVMYYEMSYGLNIEM 75
Query: 55 ---TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAII 99
EI KRLN I Q++P+LSQEHQQQV A+ERAKQVT ELN+II
Sbjct: 76 HKQAEIVKRLNGICAQVLPYLSQEHQQQVLGAIERAKQVTAPELNSII 123
>sp|P63003|AES_RAT Amino-terminal enhancer of split OS=Rattus norvegicus GN=Aes PE=2
SV=1
Length = 197
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 75/108 (69%), Gaps = 15/108 (13%)
Query: 7 QPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM------------ 54
Q KFT S+SCDRIK+EF LQAQYH+ K+E +KL EK+EMQRHYVM
Sbjct: 16 QQLKFTTSDSCDRIKDEFQLLQAQYHSLKLECDKLASEKSEMQRHYVMYYEMSYGLNIEM 75
Query: 55 ---TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAII 99
EI KRLN I Q++P+LSQEHQQQV A+ERAKQVT ELN+II
Sbjct: 76 HKQAEIVKRLNGICAQVLPYLSQEHQQQVLGAIERAKQVTAPELNSII 123
>sp|P63002|AES_MOUSE Amino-terminal enhancer of split OS=Mus musculus GN=Aes PE=1 SV=1
Length = 197
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 75/108 (69%), Gaps = 15/108 (13%)
Query: 7 QPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM------------ 54
Q KFT S+SCDRIK+EF LQAQYH+ K+E +KL EK+EMQRHYVM
Sbjct: 16 QQLKFTTSDSCDRIKDEFQLLQAQYHSLKLECDKLASEKSEMQRHYVMYYEMSYGLNIEM 75
Query: 55 ---TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAII 99
EI KRLN I Q++P+LSQEHQQQV A+ERAKQVT ELN+II
Sbjct: 76 HKQAEIVKRLNGICAQVLPYLSQEHQQQVLGAIERAKQVTAPELNSII 123
>sp|O42470|AES_XENLA Amino-terminal enhancer of split OS=Xenopus laevis GN=aes PE=2 SV=1
Length = 197
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 75/108 (69%), Gaps = 15/108 (13%)
Query: 7 QPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM------------ 54
Q KFT S+SCDRIK+EF LQAQYH+ K+E +KL EK+EMQRHYVM
Sbjct: 18 QQLKFTTSDSCDRIKDEFQLLQAQYHSLKLECDKLAGEKSEMQRHYVMYYEMSYGLNIEM 77
Query: 55 ---TEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAII 99
EI KRL+ I Q++P+LSQEHQQQV A+ERAKQVT ELN+II
Sbjct: 78 HKQAEIVKRLHGICAQVLPYLSQEHQQQVLGAIERAKQVTAPELNSII 125
>sp|Q07141|TLE4_RAT Transducin-like enhancer protein 4 OS=Rattus norvegicus GN=Tle4
PE=2 SV=2
Length = 748
Score = 110 bits (276), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/85 (62%), Positives = 58/85 (68%), Gaps = 15/85 (17%)
Query: 1 GPPQPGQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM------ 54
P QP QPFKFT+SESCDRIKEEF FLQAQYH+ K+E EKL EKTEMQRHYVM
Sbjct: 16 APHQPAQPFKFTISESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSY 75
Query: 55 ---------TEIAKRLNAIIVQIMP 70
EI KRLNAI Q++P
Sbjct: 76 GLNIEMHKQAEIVKRLNAICAQVIP 100
>sp|O02482|UNC37_CAEEL Transcription factor unc-37 OS=Caenorhabditis elegans GN=unc-37
PE=1 SV=1
Length = 612
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 10 KFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM--------------- 54
K + E+ DRIK+E + + + ++EK+ EK M R Y+
Sbjct: 2 KASYLETLDRIKDEHAEMSKHVNQQRSDIEKVALEKENMNRSYMTYAEVSNTLRSDLRKA 61
Query: 55 TEIAKRLNAIIVQ-IMPFLSQEHQQQVATALERAKQVTMTE 94
EI KRL I+Q + P LSQ++Q ALE K + E
Sbjct: 62 EEINKRLQEFIMQSLAPQLSQDNQANCLAALEAFKTASPRE 102
>sp|Q4FNS3|PDRP_PELUB Putative pyruvate, phosphate dikinase regulatory protein
OS=Pelagibacter ubique (strain HTCC1062) GN=SAR11_0343
PE=3 SV=1
Length = 274
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAKRLNAIIV 66
+ E+ DR+ F ++AQ+ N K +V+ +TE Q +M E K NAII+
Sbjct: 13 STGETLDRV---FLAIKAQFKNIKYDVKSYFFTRTENQVSKIMDEAKKNDNAIIL 64
>sp|Q1D290|RS18_MYXXD 30S ribosomal protein S18 OS=Myxococcus xanthus (strain DK 1622)
GN=rpsR PE=3 SV=1
Length = 131
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 52 YVMTEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100
Y +TE K II + + +HQ++VA A++RA+ + + NA++G
Sbjct: 87 YFVTERGK----IIPRRISGNCAKHQREVAVAIKRARGIALLPYNAVVG 131
>sp|Q12HP8|ATPD_SHEDO ATP synthase subunit delta OS=Shewanella denitrificans (strain
OS217 / ATCC BAA-1090 / DSM 15013) GN=atpH PE=3 SV=1
Length = 177
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 25 NFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAKRLNAIIVQIMPFLSQEHQQQVATAL 84
N ++ N ++EV + E R+ E AK + A +V + LS E QQQV+ +L
Sbjct: 75 NLIKVMAENGRLEVLAAVSELFTGYRN----EWAKEVEASVVSAIE-LSSEQQQQVSVSL 129
Query: 85 ER 86
E+
Sbjct: 130 EK 131
>sp|C4ZJU1|SMC_THASP Chromosome partition protein Smc OS=Thauera sp. (strain MZ1T)
GN=smc PE=3 SV=2
Length = 1208
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 13 VSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAKRLNAIIVQIMPFL 72
+ E + ++ E +QAQ H ++EV KL Q + Q E ++L + I+
Sbjct: 732 LQERINGLRRELQTIQAQVHAEQVEVLKLAQARARAQ------ERREQLARDLEDIVHLE 785
Query: 73 SQEHQQQVATALERAKQVTMTEL 95
S E + LE+A+ + EL
Sbjct: 786 SAEREHLTRAELEQARAAELAEL 808
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,005,104
Number of Sequences: 539616
Number of extensions: 901717
Number of successful extensions: 4751
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 4693
Number of HSP's gapped (non-prelim): 72
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)