Query psy17186
Match_columns 100
No_of_seqs 71 out of 73
Neff 3.0
Searched_HMMs 46136
Date Sat Aug 17 00:03:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03920 TLE_N: Groucho/TLE N- 100.0 3E-59 6.5E-64 342.9 8.2 100 1-100 9-123 (135)
2 KOG0639|consensus 100.0 7.6E-57 1.6E-61 386.7 9.5 100 1-100 9-123 (705)
3 PF11932 DUF3450: Protein of u 95.2 0.3 6.5E-06 37.4 9.6 29 53-81 106-134 (251)
4 PF02183 HALZ: Homeobox associ 92.7 0.31 6.7E-06 29.9 4.3 28 17-44 7-34 (45)
5 PF02183 HALZ: Homeobox associ 90.9 0.41 8.9E-06 29.3 3.4 29 22-50 5-33 (45)
6 PF04136 Sec34: Sec34-like fam 88.8 2.6 5.6E-05 31.0 6.9 40 13-52 26-65 (157)
7 PF08614 ATG16: Autophagy prot 82.7 6.5 0.00014 29.2 6.5 48 16-63 145-194 (194)
8 PF03882 KicB: KicB killing fa 82.4 2 4.4E-05 37.4 4.2 34 8-41 159-192 (440)
9 PRK14127 cell division protein 81.8 9.5 0.00021 27.3 6.8 38 13-50 28-65 (109)
10 PRK05260 condesin subunit F; P 81.2 2.1 4.6E-05 37.3 3.9 36 7-42 158-193 (440)
11 PRK10884 SH3 domain-containing 80.3 12 0.00026 28.9 7.4 55 20-74 137-196 (206)
12 KOG4515|consensus 75.8 9.4 0.0002 30.7 5.7 47 15-71 127-173 (217)
13 TIGR02894 DNA_bind_RsfA transc 75.5 12 0.00026 28.7 6.1 38 17-54 106-143 (161)
14 PF08581 Tup_N: Tup N-terminal 74.7 7.2 0.00016 26.4 4.2 28 13-40 2-29 (79)
15 COG0238 RpsR Ribosomal protein 74.6 3.2 7E-05 28.4 2.5 35 56-90 34-72 (75)
16 COG1422 Predicted membrane pro 70.2 24 0.00052 28.0 6.8 61 10-70 66-134 (201)
17 PF13747 DUF4164: Domain of un 69.7 32 0.00069 23.3 7.1 56 11-68 28-83 (89)
18 PF06657 Cep57_MT_bd: Centroso 67.5 34 0.00073 22.8 8.0 65 4-68 6-73 (79)
19 PF04999 FtsL: Cell division p 67.5 7.9 0.00017 25.5 3.1 25 17-41 44-68 (97)
20 PF04977 DivIC: Septum formati 67.3 20 0.00044 22.0 4.8 42 17-59 19-62 (80)
21 PLN03229 acetyl-coenzyme A car 66.7 28 0.0006 32.5 7.3 82 6-91 453-550 (762)
22 PF07926 TPR_MLP1_2: TPR/MLP1/ 66.3 43 0.00092 23.5 7.8 53 12-64 56-117 (132)
23 COG3006 MukF Uncharacterized p 64.9 8.9 0.00019 33.1 3.7 40 7-46 158-212 (440)
24 PF15233 SYCE1: Synaptonemal c 60.2 72 0.0016 24.1 8.3 45 10-54 5-59 (134)
25 PRK00391 rpsR 30S ribosomal pr 57.4 11 0.00023 25.6 2.4 20 71-90 52-71 (79)
26 PF10168 Nup88: Nuclear pore c 56.3 99 0.0022 28.2 8.9 49 27-75 570-633 (717)
27 PF05377 FlaC_arch: Flagella a 55.9 53 0.0012 21.2 5.8 46 17-71 9-54 (55)
28 PF06005 DUF904: Protein of un 54.8 60 0.0013 21.5 7.9 53 13-67 16-68 (72)
29 PF01084 Ribosomal_S18: Riboso 54.5 15 0.00033 23.0 2.6 20 71-90 32-51 (54)
30 TIGR02449 conserved hypothetic 53.8 62 0.0013 21.4 5.5 37 14-51 13-49 (65)
31 PF06005 DUF904: Protein of un 53.7 45 0.00097 22.1 4.8 34 18-51 28-61 (72)
32 KOG3156|consensus 52.3 17 0.00037 29.3 3.1 23 21-43 115-137 (220)
33 TIGR00165 S18 ribosomal protei 51.7 15 0.00033 24.4 2.4 20 71-90 43-62 (70)
34 PF05384 DegS: Sensor protein 51.6 1E+02 0.0022 23.2 8.6 32 13-44 18-49 (159)
35 PF11460 DUF3007: Protein of u 51.3 57 0.0012 23.5 5.4 21 56-84 82-102 (104)
36 PF00435 Spectrin: Spectrin re 49.9 55 0.0012 19.6 7.5 52 16-68 42-96 (105)
37 cd00890 Prefoldin Prefoldin is 49.6 63 0.0014 21.5 5.2 43 6-48 78-120 (129)
38 KOG3612|consensus 49.5 96 0.0021 28.3 7.6 72 12-83 427-524 (588)
39 PF12325 TMF_TATA_bd: TATA ele 48.7 99 0.0021 22.2 7.1 39 15-53 16-54 (120)
40 PF08776 VASP_tetra: VASP tetr 47.9 64 0.0014 19.8 4.8 27 16-48 4-30 (40)
41 PRK10772 cell division protein 47.5 23 0.00051 25.3 3.0 36 23-58 53-88 (108)
42 PRK13401 30S ribosomal protein 47.5 19 0.00041 24.8 2.4 20 71-90 51-70 (82)
43 PF10267 Tmemb_cc2: Predicted 46.9 1.3E+02 0.0027 25.9 7.6 42 8-52 205-246 (395)
44 PF08700 Vps51: Vps51/Vps67; 46.3 52 0.0011 20.7 4.2 32 12-43 55-86 (87)
45 COG4942 Membrane-bound metallo 44.9 2.1E+02 0.0046 25.0 9.9 67 15-87 52-123 (420)
46 PF01956 DUF106: Integral memb 44.6 38 0.00081 24.3 3.7 38 17-54 42-79 (168)
47 PF01166 TSC22: TSC-22/dip/bun 44.4 47 0.001 21.9 3.8 35 8-42 7-41 (59)
48 PF11285 DUF3086: Protein of u 44.3 75 0.0016 26.6 5.7 46 21-66 3-54 (283)
49 PF00038 Filament: Intermediat 44.2 69 0.0015 24.6 5.3 39 14-52 208-246 (312)
50 PF05276 SH3BP5: SH3 domain-bi 43.2 1.7E+02 0.0037 23.4 7.7 36 55-90 49-92 (239)
51 COG1730 GIM5 Predicted prefold 43.1 68 0.0015 23.9 4.9 41 14-54 5-45 (145)
52 cd00584 Prefoldin_alpha Prefol 43.0 85 0.0018 21.4 5.1 46 5-50 77-122 (129)
53 PF07106 TBPIP: Tat binding pr 42.5 1.3E+02 0.0027 21.6 8.9 69 17-86 81-156 (169)
54 PF07139 DUF1387: Protein of u 40.5 1.7E+02 0.0037 24.5 7.3 54 15-68 182-240 (302)
55 COG1730 GIM5 Predicted prefold 40.1 78 0.0017 23.6 4.9 43 5-47 84-126 (145)
56 PF04849 HAP1_N: HAP1 N-termin 39.8 1.6E+02 0.0034 24.7 7.0 48 15-62 227-275 (306)
57 PF11079 YqhG: Bacterial prote 39.4 45 0.00097 27.4 3.8 39 14-52 205-243 (260)
58 PF14842 FliG_N: FliG N-termin 39.4 33 0.00072 23.4 2.6 34 66-99 24-57 (108)
59 PF06632 XRCC4: DNA double-str 38.9 1.7E+02 0.0038 24.4 7.2 35 19-53 148-182 (342)
60 KOG2008|consensus 38.5 1.1E+02 0.0023 26.8 6.0 36 55-90 55-98 (426)
61 PF10473 CENP-F_leu_zip: Leuci 38.5 75 0.0016 23.5 4.5 35 16-50 53-87 (140)
62 PF02996 Prefoldin: Prefoldin 38.4 93 0.002 20.6 4.6 39 9-47 71-109 (120)
63 PF14775 NYD-SP28_assoc: Sperm 38.2 1.1E+02 0.0023 19.5 5.1 41 10-50 14-54 (60)
64 PF10498 IFT57: Intra-flagella 37.8 2.4E+02 0.0053 23.6 7.9 43 12-54 249-291 (359)
65 PF15590 Imm15: Immunity prote 37.7 34 0.00073 23.2 2.4 29 15-53 2-30 (69)
66 TIGR01847 bacteriocin_sig bact 37.1 18 0.00039 20.3 0.8 14 87-100 1-14 (26)
67 KOG2604|consensus 36.5 1.1E+02 0.0024 28.7 6.1 39 12-50 116-154 (733)
68 PF14988 DUF4515: Domain of un 35.4 1.1E+02 0.0025 23.5 5.3 41 11-51 152-192 (206)
69 PF10224 DUF2205: Predicted co 35.2 96 0.0021 21.1 4.3 34 17-50 18-58 (80)
70 PF11166 DUF2951: Protein of u 35.0 88 0.0019 22.5 4.2 35 12-46 22-56 (98)
71 PF06193 Orthopox_A5L: Orthopo 34.8 1.8E+02 0.0039 22.6 6.2 46 16-62 108-160 (166)
72 PF13851 GAS: Growth-arrest sp 34.7 1.9E+02 0.0041 22.0 6.3 34 21-54 99-132 (201)
73 PF07798 DUF1640: Protein of u 34.4 54 0.0012 24.1 3.2 24 21-44 72-95 (177)
74 PF09053 CagZ: CagZ; InterPro 34.4 99 0.0021 24.2 4.8 42 55-96 155-197 (199)
75 KOG1113|consensus 34.2 57 0.0012 28.1 3.7 40 47-86 104-147 (368)
76 CHL00077 rps18 ribosomal prote 34.2 41 0.00088 23.4 2.4 20 71-90 53-72 (86)
77 TIGR02209 ftsL_broad cell divi 33.9 1.2E+02 0.0027 19.0 6.0 27 17-43 33-59 (85)
78 cd00632 Prefoldin_beta Prefold 33.7 1.5E+02 0.0032 19.9 5.2 40 9-48 57-96 (105)
79 PF05701 WEMBL: Weak chloropla 33.2 2.4E+02 0.0052 24.3 7.3 40 15-54 295-334 (522)
80 TIGR00293 prefoldin, archaeal 32.6 1.6E+02 0.0035 19.9 5.3 41 9-49 80-120 (126)
81 PRK03947 prefoldin subunit alp 32.5 1.5E+02 0.0033 20.5 5.1 41 9-49 88-128 (140)
82 PF02403 Seryl_tRNA_N: Seryl-t 32.2 1.5E+02 0.0033 19.5 5.5 26 27-52 34-59 (108)
83 PF08855 DUF1825: Domain of un 31.7 2E+02 0.0043 20.8 9.0 42 46-89 50-105 (108)
84 PF01920 Prefoldin_2: Prefoldi 31.6 1.4E+02 0.0031 19.0 5.3 40 9-48 56-95 (106)
85 COG2433 Uncharacterized conser 31.4 2.2E+02 0.0047 26.5 7.0 39 14-52 428-466 (652)
86 PF05529 Bap31: B-cell recepto 31.2 1E+02 0.0022 22.6 4.2 33 20-52 159-191 (192)
87 KOG0483|consensus 30.6 57 0.0012 25.4 2.9 20 31-50 114-133 (198)
88 PF07334 IFP_35_N: Interferon- 30.1 92 0.002 21.3 3.5 28 27-54 5-32 (76)
89 PF15458 NTR2: Nineteen comple 30.1 2E+02 0.0044 22.6 6.0 40 11-50 204-243 (254)
90 PF00570 HRDC: HRDC domain Blo 29.9 88 0.0019 18.6 3.2 34 29-63 3-41 (68)
91 KOG4196|consensus 29.9 89 0.0019 23.6 3.7 37 13-50 64-102 (135)
92 PF15294 Leu_zip: Leucine zipp 29.8 1E+02 0.0022 25.5 4.4 37 15-51 132-168 (278)
93 KOG4591|consensus 29.8 85 0.0018 26.0 3.9 29 14-42 9-37 (280)
94 PRK05114 hypothetical protein; 29.6 48 0.001 22.0 2.0 19 69-90 5-23 (59)
95 PF08264 Anticodon_1: Anticodo 29.4 1E+02 0.0022 20.6 3.7 29 52-80 64-92 (153)
96 PF05103 DivIVA: DivIVA protei 29.4 81 0.0018 21.1 3.2 32 13-44 23-54 (131)
97 KOG2483|consensus 29.1 2E+02 0.0043 23.0 5.8 41 12-52 95-135 (232)
98 PF13874 Nup54: Nucleoporin co 28.8 2.2E+02 0.0047 20.3 5.6 36 17-52 53-88 (141)
99 PLN03229 acetyl-coenzyme A car 28.8 2.9E+02 0.0063 26.1 7.4 20 7-26 503-522 (762)
100 PF07106 TBPIP: Tat binding pr 28.5 2.2E+02 0.0049 20.4 5.7 80 14-98 71-150 (169)
101 COG1196 Smc Chromosome segrega 28.5 4E+02 0.0087 25.1 8.4 60 11-70 966-1031(1163)
102 PF04604 L_biotic_typeA: Type- 27.9 56 0.0012 20.9 2.1 19 82-100 7-25 (51)
103 PF12347 HJURP_C: Holliday jun 27.9 20 0.00043 23.2 0.0 17 15-31 22-38 (64)
104 PF00170 bZIP_1: bZIP transcri 27.9 1.5E+02 0.0033 18.1 4.9 33 16-48 20-52 (64)
105 PF08945 Bclx_interact: Bcl-x 27.9 66 0.0014 19.9 2.3 15 13-27 20-34 (40)
106 PF14841 FliG_M: FliG middle d 27.3 94 0.002 20.1 3.1 32 66-97 30-61 (79)
107 PRK05686 fliG flagellar motor 27.2 83 0.0018 25.4 3.4 34 66-99 31-64 (339)
108 PF08232 Striatin: Striatin fa 27.1 89 0.0019 22.5 3.3 25 25-49 7-31 (134)
109 PF08286 Spc24: Spc24 subunit 27.0 22 0.00048 24.6 0.1 39 9-47 7-45 (118)
110 PF04999 FtsL: Cell division p 26.8 1.8E+02 0.0038 19.0 4.4 41 19-59 39-79 (97)
111 PHA00727 hypothetical protein 26.8 68 0.0015 26.4 2.8 20 21-40 49-68 (278)
112 PF05103 DivIVA: DivIVA protei 26.5 49 0.0011 22.2 1.8 43 12-54 29-71 (131)
113 PF15497 SNAPc19: snRNA-activa 26.4 81 0.0018 21.9 2.8 21 15-38 7-27 (91)
114 PF13256 DUF4047: Domain of un 26.2 2.3E+02 0.0049 21.2 5.3 30 32-63 67-96 (125)
115 PF03701 UPF0181: Uncharacteri 26.2 62 0.0013 20.9 2.0 19 69-90 5-23 (51)
116 KOG0018|consensus 26.1 3.4E+02 0.0073 26.9 7.6 76 15-90 416-500 (1141)
117 PF07407 Seadorna_VP6: Seadorn 26.0 2.3E+02 0.005 24.9 6.0 45 20-67 37-87 (420)
118 TIGR02168 SMC_prok_B chromosom 25.9 2.1E+02 0.0046 25.2 5.8 53 17-69 984-1049(1179)
119 COG4985 ABC-type phosphate tra 25.9 1.2E+02 0.0026 25.4 4.2 56 13-68 176-237 (289)
120 COG4567 Response regulator con 25.6 65 0.0014 25.4 2.5 17 46-62 145-166 (182)
121 PF07749 ERp29: Endoplasmic re 25.5 2.2E+02 0.0047 19.2 6.1 58 14-75 3-79 (95)
122 PF08317 Spc7: Spc7 kinetochor 25.5 1.7E+02 0.0038 23.4 4.9 13 85-97 268-280 (325)
123 PF05384 DegS: Sensor protein 25.2 1.6E+02 0.0035 22.1 4.4 34 10-43 18-55 (159)
124 PF12297 EVC2_like: Ellis van 24.8 1.8E+02 0.0039 25.7 5.2 70 9-81 200-282 (429)
125 PF08172 CASP_C: CASP C termin 24.8 1.5E+02 0.0032 23.6 4.4 39 14-52 85-123 (248)
126 PRK05771 V-type ATP synthase s 24.7 1.5E+02 0.0033 25.8 4.8 36 14-49 92-127 (646)
127 PF15066 CAGE1: Cancer-associa 24.5 1.2E+02 0.0026 27.3 4.2 33 20-52 402-434 (527)
128 PRK13922 rod shape-determining 24.5 2.2E+02 0.0048 21.8 5.2 40 24-66 71-110 (276)
129 PF15066 CAGE1: Cancer-associa 24.4 5.4E+02 0.012 23.4 8.2 34 17-50 420-464 (527)
130 PF11458 Mistic: Membrane-inte 24.3 2.6E+02 0.0056 19.6 5.7 58 14-71 12-75 (84)
131 PF06156 DUF972: Protein of un 24.2 2.6E+02 0.0056 19.6 5.2 37 13-49 6-42 (107)
132 PF14044 NETI: NETI protein 23.7 47 0.001 21.8 1.2 12 12-23 9-20 (57)
133 PF13815 Dzip-like_N: Iguana/D 23.6 2.5E+02 0.0055 19.3 5.0 30 15-44 80-109 (118)
134 PF12802 MarR_2: MarR family; 23.5 1.1E+02 0.0024 17.6 2.7 25 76-100 6-32 (62)
135 PF13085 Fer2_3: 2Fe-2S iron-s 23.4 57 0.0012 23.0 1.6 14 11-24 29-42 (110)
136 KOG2909|consensus 23.4 1.4E+02 0.003 26.0 4.2 39 8-46 114-159 (381)
137 PRK03947 prefoldin subunit alp 23.2 1.9E+02 0.0041 20.0 4.3 29 15-43 108-136 (140)
138 PHA00489 scaffolding protein 23.2 1.9E+02 0.0041 20.9 4.2 36 15-50 27-62 (101)
139 TIGR00207 fliG flagellar motor 23.1 1.1E+02 0.0024 24.9 3.5 34 66-99 28-61 (338)
140 cd07429 Cby_like Chibby, a nuc 23.0 1.2E+02 0.0027 21.8 3.3 30 14-43 71-100 (108)
141 PRK10772 cell division protein 22.6 1.8E+02 0.004 20.7 4.1 35 16-50 53-96 (108)
142 PF11043 DUF2856: Protein of u 22.5 2E+02 0.0044 20.5 4.3 42 12-54 18-64 (97)
143 KOG4098|consensus 22.5 1.1E+02 0.0023 23.4 3.0 23 25-47 18-40 (140)
144 PF14645 Chibby: Chibby family 22.4 1.3E+02 0.0028 21.4 3.3 29 14-42 70-98 (116)
145 PF03791 KNOX2: KNOX2 domain ; 22.4 2E+02 0.0044 18.2 3.8 28 38-65 19-51 (52)
146 PF04678 DUF607: Protein of un 22.3 1.5E+02 0.0033 21.9 3.8 26 25-50 60-85 (180)
147 PF10504 DUF2452: Protein of u 21.9 1.5E+02 0.0032 22.8 3.8 28 12-39 49-76 (159)
148 PF10826 DUF2551: Protein of u 21.9 50 0.0011 23.0 1.1 16 10-25 25-40 (83)
149 PF05508 Ran-binding: RanGTP-b 21.7 4.3E+02 0.0093 22.2 6.6 65 6-73 75-142 (302)
150 PRK07194 fliG flagellar motor 21.7 1.3E+02 0.0028 24.4 3.6 34 66-99 26-59 (334)
151 PRK09750 hypothetical protein; 21.6 47 0.001 22.3 0.9 14 35-48 30-43 (64)
152 PRK10698 phage shock protein P 21.6 3.8E+02 0.0083 20.6 7.6 56 12-67 96-158 (222)
153 PF11932 DUF3450: Protein of u 21.3 3.8E+02 0.0082 20.4 7.3 35 16-50 43-77 (251)
154 cd06257 DnaJ DnaJ domain or J- 21.2 71 0.0015 18.0 1.5 23 15-37 12-34 (55)
155 PF10792 DUF2605: Protein of u 21.0 1.1E+02 0.0023 22.0 2.6 21 69-89 35-55 (98)
156 COG0060 IleS Isoleucyl-tRNA sy 21.0 95 0.002 29.6 3.0 28 51-78 749-776 (933)
157 PF04129 Vps52: Vps52 / Sac2 f 21.0 5.4E+02 0.012 22.1 7.7 54 16-69 29-83 (508)
158 PF10267 Tmemb_cc2: Predicted 20.8 5.4E+02 0.012 22.1 7.2 14 55-68 297-310 (395)
159 COG3140 Uncharacterized protei 20.3 99 0.0021 20.5 2.2 19 69-90 5-23 (60)
160 PF00038 Filament: Intermediat 20.2 4.1E+02 0.0088 20.4 6.9 41 14-54 215-255 (312)
No 1
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=100.00 E-value=3e-59 Score=342.86 Aligned_cols=100 Identities=82% Similarity=1.166 Sum_probs=98.2
Q ss_pred CCCCCCCccchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH---------------HHHHHHHHHHH
Q psy17186 1 GPPQPGQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM---------------TEIAKRLNAII 65 (100)
Q Consensus 1 ~p~~~~q~~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM---------------~Ei~KRLn~i~ 65 (100)
||+++|||||||++||||||||||++|||||||||+||||||+||+|||||||| +||+||||+||
T Consensus 9 ~~~~~~q~~KfT~~es~drIKeEf~~lqaq~hslk~E~eKla~EK~emqrhyvmyyEmSygLniEmhKq~Ei~KRL~~I~ 88 (135)
T PF03920_consen 9 GPSQPPQPFKFTTSESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQAEIAKRLNAIC 88 (135)
T ss_pred CCCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcccchHHHHHHHHhccccchhhhhhcccchhhhhcchh
Confidence 577899999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHccCCCHHHHHHHHHHHHHhhhccHHhHHhhhC
Q psy17186 66 VQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100 (100)
Q Consensus 66 ~QvlPfLsqEhQqqv~~AveraKqvt~~ELn~iig 100 (100)
+|++||||+||||+|++|+||||||||+|||+|||
T Consensus 89 aqvlP~LsqEhQqqv~~Alerakqvt~~eL~~ii~ 123 (135)
T PF03920_consen 89 AQVLPFLSQEHQQQVAQALERAKQVTMPELNSIIG 123 (135)
T ss_pred hhcCCCCChHHHHHHHHHHHHhhhhhhHHhhhhhh
Confidence 99999999999999999999999999999999997
No 2
>KOG0639|consensus
Probab=100.00 E-value=7.6e-57 Score=386.67 Aligned_cols=100 Identities=78% Similarity=1.101 Sum_probs=98.2
Q ss_pred CCCCCCCccchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH---------------HHHHHHHHHHH
Q psy17186 1 GPPQPGQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM---------------TEIAKRLNAII 65 (100)
Q Consensus 1 ~p~~~~q~~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM---------------~Ei~KRLn~i~ 65 (100)
+|+++||||||||+|+||||||||+||||||||||+||||||+||||||||||| +||+||||+||
T Consensus 9 ~~~~~~~~~Kft~~etldRIKdEfqflqaqyhslkleceKlA~EKteMqRhYvmYyEmSygLniemhKq~EI~KRLn~i~ 88 (705)
T KOG0639|consen 9 TPHQPGQPFKFTILETLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTIC 88 (705)
T ss_pred CCCCCCCCeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeeeeeccccchhhHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHccCCCHHHHHHHHHHHHHhhhccHHhHHhhhC
Q psy17186 66 VQIMPFLSQEHQQQVATALERAKQVTMTELNAIIG 100 (100)
Q Consensus 66 ~QvlPfLsqEhQqqv~~AveraKqvt~~ELn~iig 100 (100)
+|++|||||||||||++||||||||||+|||+|||
T Consensus 89 aQl~PfLsqehQqqvlqAvEraKqvT~~eln~iig 123 (705)
T KOG0639|consen 89 AQLIPFLSQEHQQQVLQAVERAKQVTMSELNAIIG 123 (705)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhhcchhhhhhhcc
Confidence 99999999999999999999999999999999998
No 3
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.20 E-value=0.3 Score=37.36 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHH
Q psy17186 53 VMTEIAKRLNAIIVQIMPFLSQEHQQQVA 81 (100)
Q Consensus 53 vM~Ei~KRLn~i~~QvlPfLsqEhQqqv~ 81 (100)
+|..+.++|..++..-+||+.+|-+..+.
T Consensus 106 ~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~ 134 (251)
T PF11932_consen 106 LMEQMIDELEQFVELDLPFLLEERQERLA 134 (251)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 44889999999999999999999988874
No 4
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.67 E-value=0.31 Score=29.86 Aligned_cols=28 Identities=39% Similarity=0.558 Sum_probs=12.5
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhhh
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQE 44 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlasE 44 (100)
||.+|..|..|.+.|.+|+.|-++|..|
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~ae 34 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAE 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 5
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.88 E-value=0.41 Score=29.31 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 22 EEFNFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 22 eEf~~lqaqyhslklEceKlasEK~emqR 50 (100)
-+|..|.++|.+|+.+.+.|..|+..++.
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~a 33 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRA 33 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888888887777776653
No 6
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=88.79 E-value=2.6 Score=30.97 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=34.9
Q ss_pred hHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHH
Q psy17186 13 VSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHY 52 (100)
Q Consensus 13 ~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhY 52 (100)
+.+.++.+.+.|+..+.+-.++...||+|..|++.+..-+
T Consensus 26 ~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~a 65 (157)
T PF04136_consen 26 ILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELA 65 (157)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999999999999999999999887654
No 7
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.75 E-value=6.5 Score=29.16 Aligned_cols=48 Identities=23% Similarity=0.381 Sum_probs=38.6
Q ss_pred hHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH--HHHHHHHHH
Q psy17186 16 SCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM--TEIAKRLNA 63 (100)
Q Consensus 16 s~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM--~Ei~KRLn~ 63 (100)
..+.++||+.-|+.+|..+.-.+.+|-.|-.++-..+|. .+-|.++|.
T Consensus 145 ~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~mN~ 194 (194)
T PF08614_consen 145 ANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAERMNE 194 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467789999999999999999999999998888888875 666777773
No 8
>PF03882 KicB: KicB killing factor; InterPro: IPR005582 This family contains MukF, which are proteins involved in chromosome condensation, segregation and cell cycle progression. MukE (IPR007385 from INTERPRO) along with MukF interact with MukB (IPR007406 from INTERPRO) in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. ; GO: 0005509 calcium ion binding, 0006260 DNA replication, 0007059 chromosome segregation, 0005737 cytoplasm; PDB: 1T98_B 3RPU_X 3EUH_B 3EUK_J 3EUJ_B.
Probab=82.40 E-value=2 Score=37.43 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=30.2
Q ss_pred ccchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHh
Q psy17186 8 PFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKL 41 (100)
Q Consensus 8 ~~Kft~~es~DRIKeEf~~lqaqyhslklEceKl 41 (100)
|+|+|+.|.+|+|---=..|-.|-|+.|.|+--|
T Consensus 159 ~LkySVaeifd~Idl~QR~MDeqQ~~vk~eIA~L 192 (440)
T PF03882_consen 159 PLKYSVAEIFDSIDLNQRAMDEQQQSVKEEIAAL 192 (440)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999899999999999984443
No 9
>PRK14127 cell division protein GpsB; Provisional
Probab=81.80 E-value=9.5 Score=27.29 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=31.4
Q ss_pred hHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 13 VSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 13 ~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqR 50 (100)
|-+.||.|-++|..+.+....|+-|...|..+-.++++
T Consensus 28 VD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55779999999999999999999888888777666665
No 10
>PRK05260 condesin subunit F; Provisional
Probab=81.21 E-value=2.1 Score=37.33 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=31.0
Q ss_pred CccchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhh
Q psy17186 7 QPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLI 42 (100)
Q Consensus 7 q~~Kft~~es~DRIKeEf~~lqaqyhslklEceKla 42 (100)
.|+|+|+.|.+|+|---=..|-+|-+|.|.|+-.|-
T Consensus 158 a~LkySVaeifd~Idl~QR~mDeqQ~~vk~eIA~LL 193 (440)
T PRK05260 158 APLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLL 193 (440)
T ss_pred hcCcCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999888899999999999854443
No 11
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.34 E-value=12 Score=28.94 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH----HHHH-HHHHHHHHHHHHHHccCCCH
Q psy17186 20 IKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR----HYVM-TEIAKRLNAIIVQIMPFLSQ 74 (100)
Q Consensus 20 IKeEf~~lqaqyhslklEceKlasEK~emqR----hYvM-~Ei~KRLn~i~~QvlPfLsq 74 (100)
+++|.+.|+.++..++.|.+.|..+-..+++ .|.| ==.+=-+--|++-++|+|.+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlilp~l~p 196 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLLPHLIP 196 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccc
Confidence 5666666677777777766665555455544 4444 22333556678888999765
No 12
>KOG4515|consensus
Probab=75.76 E-value=9.4 Score=30.68 Aligned_cols=47 Identities=28% Similarity=0.311 Sum_probs=29.1
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccC
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAKRLNAIIVQIMPF 71 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM~Ei~KRLn~i~~QvlPf 71 (100)
-+..++-+||...|++|-+--.-+-|+++ |..+--|.|-|+.+++|.
T Consensus 127 ~s~~tLf~~~~~~qk~ya~yaeq~~k~n~----------ls~~l~riq~~l~~~Vp~ 173 (217)
T KOG4515|consen 127 ASMITLFEETRAHQKQYAGYAEQLSKLNQ----------LSDDLCRIQIILEDIVPM 173 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHH
Confidence 34455556666666666666666666655 355556777777777774
No 13
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=75.53 E-value=12 Score=28.74 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=31.6
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM 54 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM 54 (100)
..++++|...|+.++-.|..|.++|-.+.+.++.-|-+
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888889999999999999998888888888855
No 14
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=74.65 E-value=7.2 Score=26.35 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=23.8
Q ss_pred hHHhHHhHHHHHHHHHHhhhhhHHHHHH
Q psy17186 13 VSESCDRIKEEFNFLQAQYHNAKMEVEK 40 (100)
Q Consensus 13 ~~es~DRIKeEf~~lqaqyhslklEceK 40 (100)
+.|.||-||.||..+...+.+.|...+.
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e 29 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDE 29 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4689999999999999988888877653
No 15
>COG0238 RpsR Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]
Probab=74.61 E-value=3.2 Score=28.41 Aligned_cols=35 Identities=34% Similarity=0.473 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcc----CCCHHHHHHHHHHHHHhhhc
Q psy17186 56 EIAKRLNAIIVQIMP----FLSQEHQQQVATALERAKQV 90 (100)
Q Consensus 56 Ei~KRLn~i~~QvlP----fLsqEhQqqv~~AveraKqv 90 (100)
|+-+|.-+--+-|+| =+|.-||.+++.||-||..+
T Consensus 34 ~~L~rfise~GKI~prRiTG~sak~QR~la~AIKRAR~l 72 (75)
T COG0238 34 ELLKRFISERGKILPRRITGTSAKHQRRLARAIKRARYL 72 (75)
T ss_pred HHHHHHhcccCcccccccccccHHHHHHHHHHHHHHHHH
Confidence 333443333344444 47788999999999999876
No 16
>COG1422 Predicted membrane protein [Function unknown]
Probab=70.24 E-value=24 Score=27.99 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=43.2
Q ss_pred chhh-HHhHHhHHHHHHHHHHhhhhhHHH-----HHHhhhhhhhHHHHH--HHHHHHHHHHHHHHHHcc
Q psy17186 10 KFTV-SESCDRIKEEFNFLQAQYHNAKME-----VEKLIQEKTEMQRHY--VMTEIAKRLNAIIVQIMP 70 (100)
Q Consensus 10 Kft~-~es~DRIKeEf~~lqaqyhslklE-----ceKlasEK~emqRhY--vM~Ei~KRLn~i~~QvlP 70 (100)
||++ .|-..|++++-+.+|..+...+.+ ++||.+++.||.++- +|..--|-+--|.--+||
T Consensus 66 ~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfkPM~~~~v~tI~ 134 (201)
T COG1422 66 KLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFKPMLYISVLTIP 134 (201)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3344 577889999888888888877764 899999999998875 344444555544444454
No 17
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=69.68 E-value=32 Score=23.34 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=36.2
Q ss_pred hhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy17186 11 FTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAKRLNAIIVQI 68 (100)
Q Consensus 11 ft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM~Ei~KRLn~i~~Qv 68 (100)
|...+.-|.+.+|++.|++--..|-.|+++.-.+=..+.. .-.|++.||++.+.-|
T Consensus 28 ~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~--~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 28 LERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEE--ANREVSRRLDSAIETI 83 (89)
T ss_pred HHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3344455677777777777777777777775444333322 1189999999877654
No 18
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=67.52 E-value=34 Score=22.80 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=45.5
Q ss_pred CCCCccchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH---HHHHHHHHHHHHHH
Q psy17186 4 QPGQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM---TEIAKRLNAIIVQI 68 (100)
Q Consensus 4 ~~~q~~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM---~Ei~KRLn~i~~Qv 68 (100)
.|.++-+-...+-+..+.|||..|+..|..|..+..++..-...-.|.=+. .+.+++|..=..||
T Consensus 6 r~s~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 6 RPSQSPGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677788999999999999999998877777776555555554444 55566666554444
No 19
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=67.49 E-value=7.9 Score=25.47 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=15.6
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHh
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKL 41 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKl 41 (100)
+++++.|...|+..+..|++|...|
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666666666664444
No 20
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=67.26 E-value=20 Score=21.96 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=30.8
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhH--HHHHHHHHHHH
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEM--QRHYVMTEIAK 59 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlasEK~em--qRhYvM~Ei~K 59 (100)
.-+++.+.+.+++++..++.|-++|..|...+ ...|+ .++|+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i-e~~AR 62 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYI-EKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH-HHHHH
Confidence 34677888888888888888888888887777 45555 44554
No 21
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=66.72 E-value=28 Score=32.49 Aligned_cols=82 Identities=23% Similarity=0.366 Sum_probs=50.9
Q ss_pred CCccchhhHHhHHhHHHHHHH----------HHHhhhhhHHHHHHhhhhhhhHHHH------HHHHHHHHHHHHHHHHHc
Q psy17186 6 GQPFKFTVSESCDRIKEEFNF----------LQAQYHNAKMEVEKLIQEKTEMQRH------YVMTEIAKRLNAIIVQIM 69 (100)
Q Consensus 6 ~q~~Kft~~es~DRIKeEf~~----------lqaqyhslklEceKlasEK~emqRh------YvM~Ei~KRLn~i~~Qvl 69 (100)
.+|...-..|..+++|+||+. |+.-+..|+.|+-|..+.-.-|.+. =++.||.+||.+. .
T Consensus 453 ~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea----~ 528 (762)
T PLN03229 453 SKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRA----P 528 (762)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcc----c
Confidence 577778889999999999985 5666667777777743311111111 1237888888872 2
Q ss_pred cCCCHHHHHHHHHHHHHhhhcc
Q psy17186 70 PFLSQEHQQQVATALERAKQVT 91 (100)
Q Consensus 70 PfLsqEhQqqv~~AveraKqvt 91 (100)
-|.+--+=-..+.++-+||-++
T Consensus 529 n~p~lk~Kle~Lk~~~~~~~~s 550 (762)
T PLN03229 529 NYLSLKYKLDMLNEFSRAKALS 550 (762)
T ss_pred ccHHHHHHHHHHHHHHHhhhhc
Confidence 2444444455666666766654
No 22
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=66.35 E-value=43 Score=23.53 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=40.5
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH---------HHHHHHHHHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM---------TEIAKRLNAI 64 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM---------~Ei~KRLn~i 64 (100)
+..+.+..+|++++.++.+...++.+.+....+=......+.. .++-+|+..+
T Consensus 56 ~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 56 EDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999999999999999999988877766666666654 5555666543
No 23
>COG3006 MukF Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=64.95 E-value=8.9 Score=33.13 Aligned_cols=40 Identities=28% Similarity=0.451 Sum_probs=32.0
Q ss_pred CccchhhHHhHHhHHHHHHHHHHhhhhhHHH---------------HHHhhhhhh
Q psy17186 7 QPFKFTVSESCDRIKEEFNFLQAQYHNAKME---------------VEKLIQEKT 46 (100)
Q Consensus 7 q~~Kft~~es~DRIKeEf~~lqaqyhslklE---------------ceKlasEK~ 46 (100)
.|+|+|+.|..|+|-=--..|..|-+|.|-+ ||.|-+|-+
T Consensus 158 aplkysvaeifdsidl~qr~mde~qqsvke~ia~ll~kdwraai~sce~ll~ets 212 (440)
T COG3006 158 APLKYSVAEIFDSIDLTQRLMDEQQQSVKDDIAQLLNKDWRAAISSCELLLSETS 212 (440)
T ss_pred hhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 4799999999999977777778888888876 666666654
No 24
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=60.18 E-value=72 Score=24.07 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=34.4
Q ss_pred chhhHHhHHhHH----------HHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH
Q psy17186 10 KFTVSESCDRIK----------EEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM 54 (100)
Q Consensus 10 Kft~~es~DRIK----------eEf~~lqaqyhslklEceKlasEK~emqRhYvM 54 (100)
.+-|-|-..||. ||...-++-..+|+-|+|+|+.||..+-+.+-+
T Consensus 5 eP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnk 59 (134)
T PF15233_consen 5 EPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNK 59 (134)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344455555654 677788888999999999999999988777655
No 25
>PRK00391 rpsR 30S ribosomal protein S18; Reviewed
Probab=57.38 E-value=11 Score=25.64 Aligned_cols=20 Identities=45% Similarity=0.529 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHhhhc
Q psy17186 71 FLSQEHQQQVATALERAKQV 90 (100)
Q Consensus 71 fLsqEhQqqv~~AveraKqv 90 (100)
-++..||..|+.||.||+.+
T Consensus 52 G~~~k~Qr~l~~aIkrAR~~ 71 (79)
T PRK00391 52 GTSAKHQRQLATAIKRARFL 71 (79)
T ss_pred CcCHHHHHHHHHHHHHHHHh
Confidence 57788999999999999875
No 26
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.27 E-value=99 Score=28.15 Aligned_cols=49 Identities=20% Similarity=0.406 Sum_probs=35.1
Q ss_pred HHHhhhhhHHHHHHhhhhhhhHHHHHHH------------HHHHHHHHHHHHHH---ccCCCHH
Q psy17186 27 LQAQYHNAKMEVEKLIQEKTEMQRHYVM------------TEIAKRLNAIIVQI---MPFLSQE 75 (100)
Q Consensus 27 lqaqyhslklEceKlasEK~emqRhYvM------------~Ei~KRLn~i~~Qv---lPfLsqE 75 (100)
|+.++..+..+++.+..++..++..--. ..+.+|+..+...+ .|.||..
T Consensus 570 Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~A 633 (717)
T PF10168_consen 570 LKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEA 633 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Confidence 5555555556677788888887665543 77889998887765 8888864
No 27
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.87 E-value=53 Score=21.20 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=25.7
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccC
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAKRLNAIIVQIMPF 71 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM~Ei~KRLn~i~~QvlPf 71 (100)
+.||+-..+-++++...++-++|++. ...++--.++|++-| ++=||
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~---envk~ll~lYE~Vs~------~iNPF 54 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIE---ENVKDLLSLYEVVSN------QINPF 54 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHc------cCCCC
Confidence 45555555666666666666666652 233333333887765 55565
No 28
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.81 E-value=60 Score=21.45 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=28.8
Q ss_pred hHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17186 13 VSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAKRLNAIIVQ 67 (100)
Q Consensus 13 ~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM~Ei~KRLn~i~~Q 67 (100)
..|+++-.+.|...|...+.+|+.+-+.|..|-..++.-+ .....||+++++.
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~--~~~~~rl~~LL~k 68 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER--NAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 3566666677777777765555555544444333333211 2334577776654
No 29
>PF01084 Ribosomal_S18: Ribosomal protein S18; InterPro: IPR001648 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S18 is known to be involved in binding the aminoacyl-tRNA complex in Escherichia coli [], and appears to be situated at the tRNA A-site. Experimental evidence has revealed that S18 is well exposed on the surface of the E. coli ribosome, and is a secondary rRNA binding protein []. S18 belongs to a family of ribosomal proteins [] that includes: eubacterial S18; metazoan mitochondrial S18, algal and plant chloroplast S18; and cyanelle S18.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2UXD_R 3I8G_U 3UZ7_U 1N33_R 2XSY_R 3V24_R 3OGY_R 2XUY_R 2XFZ_R 3UXT_R ....
Probab=54.54 E-value=15 Score=23.03 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHhhhc
Q psy17186 71 FLSQEHQQQVATALERAKQV 90 (100)
Q Consensus 71 fLsqEhQqqv~~AveraKqv 90 (100)
-|+..+|..+..||.||+..
T Consensus 32 gl~~k~Qr~l~~aIkrAR~~ 51 (54)
T PF01084_consen 32 GLCAKQQRKLAKAIKRARQL 51 (54)
T ss_dssp TSTHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 36677999999999999875
No 30
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=53.84 E-value=62 Score=21.38 Aligned_cols=37 Identities=35% Similarity=0.416 Sum_probs=27.0
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHH
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRH 51 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRh 51 (100)
...|.++++|-..|.++..++..|-..|. +|.+..|+
T Consensus 13 i~~~~~L~~EN~~Lr~q~~~~~~ER~~L~-ekne~Ar~ 49 (65)
T TIGR02449 13 LEYLERLKSENRLLRAQEKTWREERAQLL-EKNEQARQ 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45688888888888888888888877763 45565554
No 31
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=53.71 E-value=45 Score=22.05 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHH
Q psy17186 18 DRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRH 51 (100)
Q Consensus 18 DRIKeEf~~lqaqyhslklEceKlasEK~emqRh 51 (100)
++.|++-+.|......|+.|-++|..|...+++|
T Consensus 28 eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 28 EELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555544
No 32
>KOG3156|consensus
Probab=52.26 E-value=17 Score=29.29 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhh
Q psy17186 21 KEEFNFLQAQYHNAKMEVEKLIQ 43 (100)
Q Consensus 21 KeEf~~lqaqyhslklEceKlas 43 (100)
+-||.-|+++|.++|.|+||+-+
T Consensus 115 ~sEF~~lr~e~EklkndlEk~ks 137 (220)
T KOG3156|consen 115 RSEFANLRAENEKLKNDLEKLKS 137 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999854
No 33
>TIGR00165 S18 ribosomal protein S18. This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
Probab=51.72 E-value=15 Score=24.37 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHhhhc
Q psy17186 71 FLSQEHQQQVATALERAKQV 90 (100)
Q Consensus 71 fLsqEhQqqv~~AveraKqv 90 (100)
-++..||..+..||.||+.+
T Consensus 43 gl~~k~Qr~l~~aIKrAR~~ 62 (70)
T TIGR00165 43 GTSAKYQRRLARAIKRARYL 62 (70)
T ss_pred CcCHHHHHHHHHHHHHHHHH
Confidence 57788999999999999976
No 34
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=51.56 E-value=1e+02 Score=23.20 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=16.1
Q ss_pred hHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhh
Q psy17186 13 VSESCDRIKEEFNFLQAQYHNAKMEVEKLIQE 44 (100)
Q Consensus 13 ~~es~DRIKeEf~~lqaqyhslklEceKlasE 44 (100)
|.+.++....|+..++..+..+|.+......+
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~e 49 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEE 49 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554433333
No 35
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=51.29 E-value=57 Score=23.54 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy17186 56 EIAKRLNAIIVQIMPFLSQEHQQQVATAL 84 (100)
Q Consensus 56 Ei~KRLn~i~~QvlPfLsqEhQqqv~~Av 84 (100)
|+-|||++ ||+|.|+...+=+
T Consensus 82 ~lqkRle~--------l~~eE~~~L~~ei 102 (104)
T PF11460_consen 82 ELQKRLEE--------LSPEELEALQAEI 102 (104)
T ss_pred HHHHHHHh--------CCHHHHHHHHHHh
Confidence 56677776 6777766665443
No 36
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=49.95 E-value=55 Score=19.58 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=29.0
Q ss_pred hHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH---HHHHHHHHHHHHHH
Q psy17186 16 SCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM---TEIAKRLNAIIVQI 68 (100)
Q Consensus 16 s~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM---~Ei~KRLn~i~~Qv 68 (100)
-+..+++|....+..+.++...++.|...+ .-....+. .+|..|.+.++..+
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~-~~~~~~i~~~~~~l~~~w~~l~~~~ 96 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQLIDSG-PEDSDEIQEKLEELNQRWEALCELV 96 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666666666666663332 22222332 66777777776654
No 37
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=49.59 E-value=63 Score=21.45 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=34.5
Q ss_pred CCccchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhH
Q psy17186 6 GQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEM 48 (100)
Q Consensus 6 ~q~~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~em 48 (100)
|--+..|+.|+.+.+++.-.+++++...+..++.++..+-.++
T Consensus 78 ~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l 120 (129)
T cd00890 78 GVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITEL 120 (129)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778999999999999999999999998888876654443
No 38
>KOG3612|consensus
Probab=49.46 E-value=96 Score=28.33 Aligned_cols=72 Identities=26% Similarity=0.242 Sum_probs=47.5
Q ss_pred hhHHhHHhHHHHHHHHHHhhh---------hhHHHHHHhhhhhhhHHHHHHH-------------HHHHHHHHHHHHHH-
Q psy17186 12 TVSESCDRIKEEFNFLQAQYH---------NAKMEVEKLIQEKTEMQRHYVM-------------TEIAKRLNAIIVQI- 68 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyh---------slklEceKlasEK~emqRhYvM-------------~Ei~KRLn~i~~Qv- 68 (100)
-....-|.||+=|.-++.+.- ++....+||+.|-++.|++|.- .|..|-|..-++-.
T Consensus 427 d~~~~~~km~~~i~~~~~~~~sd~~~~rer~l~a~t~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~~n~ 506 (588)
T KOG3612|consen 427 DPTVVEDKMKDAIIDLQESTLSDYSGSRERSLVAATEKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHAENI 506 (588)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 334556888888888887643 4778899999999999999943 33333333332222
Q ss_pred ---ccCCCHHHHHHHHHH
Q psy17186 69 ---MPFLSQEHQQQVATA 83 (100)
Q Consensus 69 ---lPfLsqEhQqqv~~A 83 (100)
+--|.-+||+-|+.+
T Consensus 507 ~e~~kkl~~~~qr~l~et 524 (588)
T KOG3612|consen 507 KEEIKKLAEEHQRALAET 524 (588)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334556888877654
No 39
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.75 E-value=99 Score=22.22 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=29.2
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHH
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYV 53 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYv 53 (100)
-..+|+.-....+...+++++.++..|..+|.++..--|
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv 54 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIV 54 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777888888888888888888877765443
No 40
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=47.95 E-value=64 Score=19.84 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=16.7
Q ss_pred hHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhH
Q psy17186 16 SCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEM 48 (100)
Q Consensus 16 s~DRIKeEf~~lqaqyhslklEceKlasEK~em 48 (100)
-+||+|.|. ....+.|+.|+-.|-.+-
T Consensus 4 dle~~KqEI------L~EvrkEl~K~K~EIIeA 30 (40)
T PF08776_consen 4 DLERLKQEI------LEEVRKELQKVKEEIIEA 30 (40)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 367888876 556666666665544433
No 41
>PRK10772 cell division protein FtsL; Provisional
Probab=47.55 E-value=23 Score=25.28 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=16.5
Q ss_pred HHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHHHHHH
Q psy17186 23 EFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIA 58 (100)
Q Consensus 23 Ef~~lqaqyhslklEceKlasEK~emqRhYvM~Ei~ 58 (100)
|.+.++++...|..|+..|--|++.+.-|--...+|
T Consensus 53 ele~l~~e~~~Le~Ew~~L~LEqstla~hsRIE~iA 88 (108)
T PRK10772 53 EREQLVLERDALDIEWRNLILEENALGDHSRVERIA 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 344444444445555444444444444444333333
No 42
>PRK13401 30S ribosomal protein S18; Provisional
Probab=47.50 E-value=19 Score=24.84 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHhhhc
Q psy17186 71 FLSQEHQQQVATALERAKQV 90 (100)
Q Consensus 71 fLsqEhQqqv~~AveraKqv 90 (100)
-++..||.+++.||.||..+
T Consensus 51 Gl~~k~QR~l~~AIKrAR~l 70 (82)
T PRK13401 51 GLTVQQQRQVATAIKNAREM 70 (82)
T ss_pred CcCHHHHHHHHHHHHHHHHH
Confidence 57888999999999999876
No 43
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=46.86 E-value=1.3e+02 Score=25.90 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=32.6
Q ss_pred ccchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHH
Q psy17186 8 PFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHY 52 (100)
Q Consensus 8 ~~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhY 52 (100)
+......+.++.|++|.+.+...+.+|..++|+|-. .+++-|
T Consensus 205 ~~~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~---~~~~e~ 246 (395)
T PF10267_consen 205 SVSSQQNLGLQKILEELREIKESQSRLEESIEKLKE---QYQREY 246 (395)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 344556788999999999999999999999999854 455544
No 44
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=46.33 E-value=52 Score=20.70 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=20.6
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhh
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQ 43 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceKlas 43 (100)
+++|....++.+...|......++..|+++++
T Consensus 55 ~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~~ 86 (87)
T PF08700_consen 55 EASDEISSMENDLSELRNLLSELQQSIQSLQE 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44566666666666666666666666666643
No 45
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.85 E-value=2.1e+02 Score=24.96 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=42.5
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHH-HH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHh
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHY-VM----TEIAKRLNAIIVQIMPFLSQEHQQQVATALERA 87 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhY-vM----~Ei~KRLn~i~~QvlPfLsqEhQqqv~~Avera 87 (100)
..++.++++++.|+++..+++.|+..+-.+-.+.+..- .. .++.++|+.+-.|- ..|..+++-+-+|
T Consensus 52 ~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~------r~qr~~La~~L~A 123 (420)
T COG4942 52 KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE------REQRRRLAEQLAA 123 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 45778889999999999999999888765544433321 11 55566666655543 3455554444443
No 46
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=44.63 E-value=38 Score=24.30 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM 54 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM 54 (100)
.|+.|..-+.+++.+..++.+.++...+|-+..|.|+|
T Consensus 42 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 79 (168)
T PF01956_consen 42 MDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELM 79 (168)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence 78888888889999999999999888889888888887
No 47
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=44.40 E-value=47 Score=21.95 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=29.7
Q ss_pred ccchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhh
Q psy17186 8 PFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLI 42 (100)
Q Consensus 8 ~~Kft~~es~DRIKeEf~~lqaqyhslklEceKla 42 (100)
.+.|.+.|-.|-+|+....|..+...|..|+.-|-
T Consensus 7 HLm~AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 7 HLMYAVREEVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HGGGT-TTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999987664
No 48
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=44.28 E-value=75 Score=26.60 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH------HHHHHHHHHHHH
Q psy17186 21 KEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM------TEIAKRLNAIIV 66 (100)
Q Consensus 21 KeEf~~lqaqyhslklEceKlasEK~emqRhYvM------~Ei~KRLn~i~~ 66 (100)
.+-+..|+..-.+|..|+|+|...|..++.---. -+||.|..++=-
T Consensus 3 ~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RVqGFkd 54 (283)
T PF11285_consen 3 QEALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRVQGFKD 54 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHhhhHH
Confidence 3445678899999999999999988777654322 899999988643
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=44.19 E-value=69 Score=24.61 Aligned_cols=39 Identities=28% Similarity=0.410 Sum_probs=30.8
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHH
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHY 52 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhY 52 (100)
.+.+++.|+|...+..++.+|..++++|.+.+..+.+.-
T Consensus 208 ~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 208 SEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 456788888888888888888888888887777666554
No 50
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=43.21 E-value=1.7e+02 Score=23.36 Aligned_cols=36 Identities=33% Similarity=0.526 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHhhhc
Q psy17186 55 TEIAKRLNAIIVQIMPFLS--------QEHQQQVATALERAKQV 90 (100)
Q Consensus 55 ~Ei~KRLn~i~~QvlPfLs--------qEhQqqv~~AveraKqv 90 (100)
.+++|+|..-|.---||.- +..=|+.+...|||..+
T Consensus 49 ~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~ 92 (239)
T PF05276_consen 49 NELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSM 92 (239)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777766666688754 33445667778888765
No 51
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=43.08 E-value=68 Score=23.89 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=35.9
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM 54 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM 54 (100)
...++++-.++|.+++|..+|..+++-|...+++++..=-.
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~t 45 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIET 45 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998886544
No 52
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.98 E-value=85 Score=21.35 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=37.1
Q ss_pred CCCccchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 5 PGQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 5 ~~q~~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqR 50 (100)
.|--..+|+.|+.+-+++.-..|+.+...+.-++.++..+-+.++.
T Consensus 77 ~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 77 TGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677999999999999999999999999999888776655554
No 53
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.47 E-value=1.3e+02 Score=21.65 Aligned_cols=69 Identities=17% Similarity=0.305 Sum_probs=35.2
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH-------HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM-------TEIAKRLNAIIVQIMPFLSQEHQQQVATALER 86 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM-------~Ei~KRLn~i~~QvlPfLsqEhQqqv~~Aver 86 (100)
+..+++|...|...+.+|+.|+-.|.+.-|.-+.-=.+ .++-.||..+-...-| .|++.-..+.....+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~-vs~ee~~~~~~~~~~ 156 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKP-VSPEEKEKLEKEYKK 156 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH
Confidence 44555555555555555555555555554433321111 4445666665553333 666665555554443
No 54
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=40.49 E-value=1.7e+02 Score=24.53 Aligned_cols=54 Identities=28% Similarity=0.262 Sum_probs=40.6
Q ss_pred HhHHhHHHHHHHHHHhhh----hhHHHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHH
Q psy17186 15 ESCDRIKEEFNFLQAQYH----NAKMEVEKLIQEKTEMQ-RHYVMTEIAKRLNAIIVQI 68 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyh----slklEceKlasEK~emq-RhYvM~Ei~KRLn~i~~Qv 68 (100)
.|..+||.-|+.|+..++ .|-.|++|+-.|.+++= .+---+|--|||...-+|+
T Consensus 182 ~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~M 240 (302)
T PF07139_consen 182 SSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQM 240 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457799999999998876 67889999999988862 2222278888888766665
No 55
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=40.09 E-value=78 Score=23.57 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=28.1
Q ss_pred CCCccchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhh
Q psy17186 5 PGQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTE 47 (100)
Q Consensus 5 ~~q~~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~e 47 (100)
.|=...-|+-|+.+++|+.-+.|.+-...+.-++++|+...+.
T Consensus 84 sg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~ 126 (145)
T COG1730 84 SGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQ 126 (145)
T ss_pred CceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555888999999997766666666666666665554433
No 56
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=39.83 E-value=1.6e+02 Score=24.70 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=34.8
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH-HHHHHHHH
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM-TEIAKRLN 62 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM-~Ei~KRLn 62 (100)
|-|.|--+|...|.+|.-.+...|-.++.|+.+++.|-.- .|+-.+|.
T Consensus 227 Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~ 275 (306)
T PF04849_consen 227 EENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQ 275 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777778888888899999999999998765 34434443
No 57
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=39.42 E-value=45 Score=27.37 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=31.3
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHH
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHY 52 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhY 52 (100)
-|+..|.+||...|.+=|.+.-.+-|....||.+|+-.|
T Consensus 205 ~eA~~R~~eel~lL~~fYE~~eek~E~y~~ek~al~~qY 243 (260)
T PF11079_consen 205 EEARERWQEELALLDHFYEDEEEKPEQYEIEKQALQEQY 243 (260)
T ss_pred HHHHHHHHHHHHHHHHhhcchhcchHHHHHHHHHHHHHh
Confidence 367889999999999999886555577777888887666
No 58
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=39.38 E-value=33 Score=23.35 Aligned_cols=34 Identities=12% Similarity=0.398 Sum_probs=23.3
Q ss_pred HHHccCCCHHHHHHHHHHHHHhhhccHHhHHhhh
Q psy17186 66 VQIMPFLSQEHQQQVATALERAKQVTMTELNAII 99 (100)
Q Consensus 66 ~QvlPfLsqEhQqqv~~AveraKqvt~~ELn~ii 99 (100)
+.|+-.|+++..+.|..++-+-+.|+..++..++
T Consensus 24 a~vlk~l~~~ei~~i~~~ma~l~~v~~~~~~~Vl 57 (108)
T PF14842_consen 24 AEVLKHLDEEEIERISREMAKLGSVSPEEVEEVL 57 (108)
T ss_dssp HHHHHHS-HHHHHHHHHHHHT-----HHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHccCCCCHHHHHHHH
Confidence 4567788999999999999999999988887764
No 59
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=38.90 E-value=1.7e+02 Score=24.42 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHH
Q psy17186 19 RIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYV 53 (100)
Q Consensus 19 RIKeEf~~lqaqyhslklEceKlasEK~emqRhYv 53 (100)
++..|+..|+...+.+..++|++..+|.++-+-..
T Consensus 148 ~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~ 182 (342)
T PF06632_consen 148 HLQKENERLESEANKLLKQLEKFVNAKEEHEEDLY 182 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555556666668888999988876553
No 60
>KOG2008|consensus
Probab=38.53 E-value=1.1e+02 Score=26.79 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHhhhc
Q psy17186 55 TEIAKRLNAIIVQIMPFLS--------QEHQQQVATALERAKQV 90 (100)
Q Consensus 55 ~Ei~KRLn~i~~QvlPfLs--------qEhQqqv~~AveraKqv 90 (100)
-||+|.+..-|.--=||.- ++.=|+.++-+|||+.|
T Consensus 55 ~el~Kk~~k~I~ksrpf~elk~~er~~r~e~QkAa~~FeRat~v 98 (426)
T KOG2008|consen 55 DELVKKIGKAIEKSRPFWELKRVERQARLEAQKAAQDFERATEV 98 (426)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888988888888888875 33446778889998865
No 61
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=38.46 E-value=75 Score=23.55 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=31.1
Q ss_pred hHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 16 SCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 16 s~DRIKeEf~~lqaqyhslklEceKlasEK~emqR 50 (100)
.|.+++++..-|-.-...|..|+.-+.+||.++.+
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999998876
No 62
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=38.40 E-value=93 Score=20.56 Aligned_cols=39 Identities=15% Similarity=0.283 Sum_probs=30.5
Q ss_pred cchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhh
Q psy17186 9 FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTE 47 (100)
Q Consensus 9 ~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~e 47 (100)
...|+.|+.+.+++....|+.+...+..++.++...-..
T Consensus 71 vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~ 109 (120)
T PF02996_consen 71 VEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQ 109 (120)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999998888888888888888777655443
No 63
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=38.22 E-value=1.1e+02 Score=19.54 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=31.7
Q ss_pred chhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 10 KFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 10 Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqR 50 (100)
+..+.++++.--+.|+..=.+-..+-.|+++|..+-+|++.
T Consensus 14 ~~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~ 54 (60)
T PF14775_consen 14 KIRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRS 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899998888888888888888888888666665543
No 64
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=37.82 E-value=2.4e+02 Score=23.60 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=36.4
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM 54 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM 54 (100)
.+..++|||.--=.+|..|+..+..|.-....+-.+++.-|=.
T Consensus 249 ~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~ 291 (359)
T PF10498_consen 249 DISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQ 291 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899998888889999999999988888888899988854
No 65
>PF15590 Imm15: Immunity protein 15
Probab=37.70 E-value=34 Score=23.24 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=20.6
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHH
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYV 53 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYv 53 (100)
.+||||++= ... -++|+++++-..++-|+
T Consensus 2 ~i~~rIe~L---i~n-------~Lqkv~~~~d~We~~y~ 30 (69)
T PF15590_consen 2 IIKMRIEWL---ITN-------RLQKVASSPDGWETLYQ 30 (69)
T ss_pred cHHHHHHHH---HHH-------HHHHHhcCCcchhhhcc
Confidence 479999872 222 28899988878887774
No 66
>TIGR01847 bacteriocin_sig bacteriocin-type signal sequence. Bacteriocins are bacterial peptide products toxic to closely related bacteria. This model represents the N-terminal region up to the GG cleavage motif. Processing to remove this bacteriocin leader peptide occurs together with export by an ABC transporter. Note: because this model is so small (15 amino acids), it may have many spurious high-scoring matches to unrelated proteins, even with fairly stringent cutoff scores. The most likely true positives are small proteins of Gram-positive bacteria, matching regions that start within the first 15 amino acids, and encoded near bacteriocin transport family proteins (TIGR01000, TIGR01193).
Probab=37.14 E-value=18 Score=20.33 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=11.6
Q ss_pred hhhccHHhHHhhhC
Q psy17186 87 AKQVTMTELNAIIG 100 (100)
Q Consensus 87 aKqvt~~ELn~iig 100 (100)
+|.+|-.||++|+|
T Consensus 1 fk~Ls~kEL~~I~G 14 (26)
T TIGR01847 1 FKELSEKELAQIIG 14 (26)
T ss_pred CccCCHHHHhhccC
Confidence 36788899999987
No 67
>KOG2604|consensus
Probab=36.53 E-value=1.1e+02 Score=28.67 Aligned_cols=39 Identities=13% Similarity=0.358 Sum_probs=30.8
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqR 50 (100)
.+.|.++-.+++|.+...-...+--+||.|-.|+++++-
T Consensus 116 ~~~~~l~sl~~k~~~vs~kt~~l~eace~l~~eq~kl~e 154 (733)
T KOG2604|consen 116 NALDTLLSLQKKFEFVSQKTSALHEACEQLLEEQSKLSE 154 (733)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 346667777788888888888888889999999887753
No 68
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=35.38 E-value=1.1e+02 Score=23.48 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=34.5
Q ss_pred hhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHH
Q psy17186 11 FTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRH 51 (100)
Q Consensus 11 ft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRh 51 (100)
-.+.|.|..|+.|...|+...-.+--|..+|...++.+.+.
T Consensus 152 ~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~q 192 (206)
T PF14988_consen 152 KSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQ 192 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999888888888877777654
No 69
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=35.15 E-value=96 Score=21.10 Aligned_cols=34 Identities=29% Similarity=0.277 Sum_probs=21.6
Q ss_pred HHhHHHHHHHHHH-------hhhhhHHHHHHhhhhhhhHHH
Q psy17186 17 CDRIKEEFNFLQA-------QYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 17 ~DRIKeEf~~lqa-------qyhslklEceKlasEK~emqR 50 (100)
-+++-.+...||. .....|.||+||.+|-.=+|-
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444554 445678899999998765553
No 70
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=35.04 E-value=88 Score=22.54 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=23.8
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhh
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKT 46 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceKlasEK~ 46 (100)
++.+++|.||+=-.-....|.++-.-++++..||.
T Consensus 22 ~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~reRe 56 (98)
T PF11166_consen 22 TIFNKLDEIKDGQHDQELVNQKLDRTLDEINRERE 56 (98)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHH
Confidence 46788999998766666666666666666666543
No 71
>PF06193 Orthopox_A5L: Orthopoxvirus A5L protein-like; InterPro: IPR010396 This family consists of several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion [].
Probab=34.76 E-value=1.8e+02 Score=22.60 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=31.1
Q ss_pred hHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHH-------HHHHHHHHH
Q psy17186 16 SCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYV-------MTEIAKRLN 62 (100)
Q Consensus 16 s~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYv-------M~Ei~KRLn 62 (100)
+.+-|+.||+-++.-.++|..|-+.|-++=+. .|.|- |.|..||++
T Consensus 108 t~~~IikEl~dik~~t~~LQ~es~~Lv~DIs~-AKe~T~~AIn~IM~~L~k~fq 160 (166)
T PF06193_consen 108 TKDNIIKELNDIKDETSSLQAESNSLVTDISD-AKESTQDAINDIMKDLSKKFQ 160 (166)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777777777777665444 66663 467777775
No 72
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=34.74 E-value=1.9e+02 Score=21.99 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH
Q psy17186 21 KEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM 54 (100)
Q Consensus 21 KeEf~~lqaqyhslklEceKlasEK~emqRhYvM 54 (100)
.+++..|.-.+..|...|+||-.|+.++.+.|..
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666689999999999998865
No 73
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=34.39 E-value=54 Score=24.06 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhh
Q psy17186 21 KEEFNFLQAQYHNAKMEVEKLIQE 44 (100)
Q Consensus 21 KeEf~~lqaqyhslklEceKlasE 44 (100)
|.+|+.|.+....|+.|+++|..+
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777888887777654
No 74
>PF09053 CagZ: CagZ; InterPro: IPR015139 Helicobacter pylori (Campylobacter pylori) clinical isolates can be classified into two types according to their degree of pathogenicity. Type I strains are associated with a severe disease pathology, express functional VacA (vacuolating cytotoxin A) and contain an insertion of 40 kb of foreign DNA: the cag (cytotoxin-associated gene) pathogenicity island (cagPAI). Type II strains lack the 40 kb insert, cagPAI. The cagPAI may be divided into two regions, cag I and cag II and contain approximately 16 and 15 genes, respectively. The cagPAI encodes a type IV secretion system (T4SS), which delivers CagA into the cytosol of gastric epithelial cells through a rigid needle structure covered by Cag7 or CagY, a VirB10-homologous protein, and CagT, a VirB7-homologous protein, at the base []. The CagA protein is the virulence factor that induces morphological changes in host cells, which may be associated with the development of peptic ulcer and gastric carcinoma []. CagZ is a 23 kDa protein consisting of a single compact L-shaped domain, composed of seven alpha-helices that run antiparallel to each other. 70% of the residues are in alpha-helix conformation and no beta-sheet is present. CagZ is essential for the translocation of the pathogenic protein CagA into host cells []. ; PDB: 1S2X_A.
Probab=34.37 E-value=99 Score=24.18 Aligned_cols=42 Identities=33% Similarity=0.513 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHhhhccHHhHH
Q psy17186 55 TEIAKRLNAIIVQI-MPFLSQEHQQQVATALERAKQVTMTELN 96 (100)
Q Consensus 55 ~Ei~KRLn~i~~Qv-lPfLsqEhQqqv~~AveraKqvt~~ELn 96 (100)
-...|.||.|..-+ -.|.--..-..-+..+||||-+|--.||
T Consensus 155 ddfgkklneivqdigtkyiilsknktyltsleraklitqlkln 197 (199)
T PF09053_consen 155 DDFGKKLNEIVQDIGTKYIILSKNKTYLTSLERAKLITQLKLN 197 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred hhHhHHHHHHHHHhCceEEEEecCchHHhHHHHHHHHHHHhhc
Confidence 56778888887644 2222222335567789999998876655
No 75
>KOG1113|consensus
Probab=34.24 E-value=57 Score=28.12 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=31.9
Q ss_pred hHHHHHHH--HHHHHHHHHHHHHHccC--CCHHHHHHHHHHHHH
Q psy17186 47 EMQRHYVM--TEIAKRLNAIIVQIMPF--LSQEHQQQVATALER 86 (100)
Q Consensus 47 emqRhYvM--~Ei~KRLn~i~~QvlPf--LsqEhQqqv~~Aver 86 (100)
+.-|+|-= .|-.+||..+|.-.++| |++|+..||+.|++-
T Consensus 104 ~~~~~~~pKd~e~~~~L~~a~r~~~LF~~Ld~eq~~~v~dam~~ 147 (368)
T KOG1113|consen 104 EFKRKYIPKDDETRRRLEEAFRKNLLFANLDDEQLSQVLDAMFE 147 (368)
T ss_pred hhhhcCCCCCHHHHHHHHHHHHhccccccCCHHHHHHHHHhhce
Confidence 34444433 77889999999999885 899999999999863
No 76
>CHL00077 rps18 ribosomal protein S18
Probab=34.16 E-value=41 Score=23.43 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHhhhc
Q psy17186 71 FLSQEHQQQVATALERAKQV 90 (100)
Q Consensus 71 fLsqEhQqqv~~AveraKqv 90 (100)
-++..||..|+.||.||+.+
T Consensus 53 Gl~~K~QR~l~~aIKrAR~~ 72 (86)
T CHL00077 53 RLTLKQQRLITKAIKQARIL 72 (86)
T ss_pred CcCHHHHHHHHHHHHHHHHH
Confidence 57788999999999999876
No 77
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=33.92 E-value=1.2e+02 Score=19.00 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=15.1
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhh
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQ 43 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlas 43 (100)
+.+++.+...+++.+..|+.|..+|++
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444555555556666666666555543
No 78
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.68 E-value=1.5e+02 Score=19.86 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=26.5
Q ss_pred cchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhH
Q psy17186 9 FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEM 48 (100)
Q Consensus 9 ~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~em 48 (100)
++.+..|..+.+++...++.+....+....+.+..+-.++
T Consensus 57 v~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 57 VKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888888877777776666666666655544333
No 79
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=33.19 E-value=2.4e+02 Score=24.35 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=35.1
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM 54 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM 54 (100)
..++++++|-+.|+.-.-||+.|+++...+...++...-+
T Consensus 295 ~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~ 334 (522)
T PF05701_consen 295 KELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKE 334 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999998888888887766
No 80
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=32.61 E-value=1.6e+02 Score=19.92 Aligned_cols=41 Identities=10% Similarity=0.193 Sum_probs=33.6
Q ss_pred cchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHH
Q psy17186 9 FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQ 49 (100)
Q Consensus 9 ~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emq 49 (100)
..+|+.|+.+-+++.-..|..+...+.-.+.++..+-+.+.
T Consensus 80 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~ 120 (126)
T TIGR00293 80 VEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLE 120 (126)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999999999999988888876655543
No 81
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=32.46 E-value=1.5e+02 Score=20.48 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=33.4
Q ss_pred cchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHH
Q psy17186 9 FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQ 49 (100)
Q Consensus 9 ~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emq 49 (100)
..+|+.|+.+-+++....|..+...+.-++.++..+-.+++
T Consensus 88 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 88 AEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999988888876654443
No 82
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=32.23 E-value=1.5e+02 Score=19.55 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=17.6
Q ss_pred HHHhhhhhHHHHHHhhhhhhhHHHHH
Q psy17186 27 LQAQYHNAKMEVEKLIQEKTEMQRHY 52 (100)
Q Consensus 27 lqaqyhslklEceKlasEK~emqRhY 52 (100)
|-.++-++..+.+.|..++-.+.+..
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I 59 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEI 59 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56667777777777777766666654
No 83
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=31.71 E-value=2e+02 Score=20.78 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=28.1
Q ss_pred hhHHHHHHH----------HHHHHHHHHHHHHH-ccCCCH---HHHHHHHHHHHHhhh
Q psy17186 46 TEMQRHYVM----------TEIAKRLNAIIVQI-MPFLSQ---EHQQQVATALERAKQ 89 (100)
Q Consensus 46 ~emqRhYvM----------~Ei~KRLn~i~~Qv-lPfLsq---EhQqqv~~AveraKq 89 (100)
.+-||.++. .+...|+|+.+.+. +|- + +-=.+..+.+|++||
T Consensus 50 idkqkiF~~Rl~LSdD~~Ak~m~~qi~~~~~~fG~~~--~~l~~~fd~m~~tLe~mkq 105 (108)
T PF08855_consen 50 IDKQKIFYKRLELSDDPEAKDMKEQINAQLNQFGYTP--QDLSQMFDQMNQTLERMKQ 105 (108)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHcCCCc--chHHHHHHHHHHHHHHHHH
Confidence 567777766 67778888877766 332 3 344566667777776
No 84
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.65 E-value=1.4e+02 Score=19.04 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=28.3
Q ss_pred cchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhH
Q psy17186 9 FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEM 48 (100)
Q Consensus 9 ~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~em 48 (100)
++.+..+..+.|+++...+++....++.+.+.+..+-.++
T Consensus 56 v~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 56 VKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888888887777777776665544443
No 85
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=31.39 E-value=2.2e+02 Score=26.46 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=34.2
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHH
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHY 52 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhY 52 (100)
-+..+|.++|-+.|++-.-.+|-|+|+|-++-.++.|..
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999988888876
No 86
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.21 E-value=1e+02 Score=22.56 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHH
Q psy17186 20 IKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHY 52 (100)
Q Consensus 20 IKeEf~~lqaqyhslklEceKlasEK~emqRhY 52 (100)
.++|...|..+......|.+.|...-...++.|
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444444444444334444433
No 87
>KOG0483|consensus
Probab=30.61 E-value=57 Score=25.43 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=8.5
Q ss_pred hhhhHHHHHHhhhhhhhHHH
Q psy17186 31 YHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 31 yhslklEceKlasEK~emqR 50 (100)
|..||-.|+.|.+++.-+|+
T Consensus 114 ~~~Lk~~~~~l~~~~~~Lq~ 133 (198)
T KOG0483|consen 114 YESLKRQLESLRSENDRLQS 133 (198)
T ss_pred HHHHHHHHHHHhhhhhHHHH
Confidence 44444444444444444443
No 88
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=30.11 E-value=92 Score=21.27 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=19.3
Q ss_pred HHHhhhhhHHHHHHhhhhhhhHHHHHHH
Q psy17186 27 LQAQYHNAKMEVEKLIQEKTEMQRHYVM 54 (100)
Q Consensus 27 lqaqyhslklEceKlasEK~emqRhYvM 54 (100)
|+...-.||.|+.||-.|..++.|.|-.
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~~~~~~qI 32 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQNKREFQI 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4555777888888887666666665543
No 89
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=30.05 E-value=2e+02 Score=22.61 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=32.0
Q ss_pred hhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 11 FTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 11 ft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqR 50 (100)
+++.+.+.||......|+..-..+..-++.|..||.++..
T Consensus 204 P~L~~~~~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~ 243 (254)
T PF15458_consen 204 PSLSECLERLRESLSSLEDSKSQLQQQLESLEKEKEEIEE 243 (254)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888999999988888888888888888888766543
No 90
>PF00570 HRDC: HRDC domain Bloom syndrome. Werner syndrome.; InterPro: IPR002121 The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain associated with the human BLM gene result in Bloom Syndrome (BS), an autosomal recessive disorder characterised by proportionate pre- and postnatal growth deficiency; sun-sensitive, telangiectatic, hypo- and hyperpigmented skin; predisposition to malignancy; and chromosomal instability [].; GO: 0003676 nucleic acid binding, 0005622 intracellular; PDB: 3SAG_B 3SAH_B 2CPR_A 3SAF_B 3CYM_A 1WUD_A 2HBK_A 2HBJ_A 2HBM_A 2HBL_A ....
Probab=29.86 E-value=88 Score=18.64 Aligned_cols=34 Identities=32% Similarity=0.340 Sum_probs=22.8
Q ss_pred HhhhhhHHHHHHhhhhhhhHHHHHHH-----HHHHHHHHH
Q psy17186 29 AQYHNAKMEVEKLIQEKTEMQRHYVM-----TEIAKRLNA 63 (100)
Q Consensus 29 aqyhslklEceKlasEK~emqRhYvM-----~Ei~KRLn~ 63 (100)
+-|..|+.-.+++|.+. ++-+++|| .+||+++-.
T Consensus 3 ~~~~~L~~~R~~~A~~~-~~~~~~Il~~~~L~~ia~~~P~ 41 (68)
T PF00570_consen 3 ALLKALKEWREELAREE-DVPPYRILSDEALLEIAKRLPT 41 (68)
T ss_dssp HHHHHHHHHHHHHHHHH-TS-HHHHS-HHHHHHHHHH--S
T ss_pred HHHHHHHHHHHHHHHHc-CcCcccccCHHHHHHHHHhCCC
Confidence 34667777889998554 58888888 777777654
No 91
>KOG4196|consensus
Probab=29.86 E-value=89 Score=23.62 Aligned_cols=37 Identities=30% Similarity=0.494 Sum_probs=24.8
Q ss_pred hHHhHHhHHHHH--HHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 13 VSESCDRIKEEF--NFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 13 ~~es~DRIKeEf--~~lqaqyhslklEceKlasEK~emqR 50 (100)
|.-|| |+|.=- ..|+++...|..|+|+|+.|-+.|.|
T Consensus 64 YA~sC-R~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 64 YAQSC-RVKRVQQKHELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 444322 24777888888888888888887775
No 92
>PF15294 Leu_zip: Leucine zipper
Probab=29.82 E-value=1e+02 Score=25.48 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=31.0
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHH
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRH 51 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRh 51 (100)
.-.+|+++|-..|....-++...|-....||+.+++.
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~ 168 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQ 168 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468888888888888888888999999999998874
No 93
>KOG4591|consensus
Probab=29.82 E-value=85 Score=26.00 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=23.7
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhh
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLI 42 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKla 42 (100)
-+-+|-+|+|||-||...-.++..|--|+
T Consensus 9 ~d~L~iLkeef~aLQke~~E~~kkcall~ 37 (280)
T KOG4591|consen 9 EDHLDILKEEFNALQKEHAELEKKCALLA 37 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999998887777776554
No 94
>PRK05114 hypothetical protein; Provisional
Probab=29.62 E-value=48 Score=21.95 Aligned_cols=19 Identities=42% Similarity=0.749 Sum_probs=14.7
Q ss_pred ccCCCHHHHHHHHHHHHHhhhc
Q psy17186 69 MPFLSQEHQQQVATALERAKQV 90 (100)
Q Consensus 69 lPfLsqEhQqqv~~AveraKqv 90 (100)
+|-||.|.||+ ||||-.++
T Consensus 5 lp~LtHeeQQ~---AVErIq~L 23 (59)
T PRK05114 5 LPSLTHEQQQK---AVERIQEL 23 (59)
T ss_pred cccCCHHHHHH---HHHHHHHH
Confidence 79999999985 67775543
No 95
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=29.43 E-value=1e+02 Score=20.63 Aligned_cols=29 Identities=34% Similarity=0.583 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHH
Q psy17186 52 YVMTEIAKRLNAIIVQIMPFLSQEHQQQV 80 (100)
Q Consensus 52 YvM~Ei~KRLn~i~~QvlPfLsqEhQqqv 80 (100)
|++.++.+.+-.+++=++||++.|-=+.+
T Consensus 64 ~~l~~~l~~~~~ll~P~~P~~aEeiw~~l 92 (153)
T PF08264_consen 64 YTLYEILKILLILLSPFMPFIAEEIWQRL 92 (153)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHh
Confidence 66688888888888888998888855433
No 96
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=29.39 E-value=81 Score=21.12 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=20.5
Q ss_pred hHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhh
Q psy17186 13 VSESCDRIKEEFNFLQAQYHNAKMEVEKLIQE 44 (100)
Q Consensus 13 ~~es~DRIKeEf~~lqaqyhslklEceKlasE 44 (100)
|-+.+|++-+++..|..++-.|+.+++.|..+
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~ 54 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQ 54 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556777777777777777766666655443
No 97
>KOG2483|consensus
Probab=29.15 E-value=2e+02 Score=22.99 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=35.9
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHY 52 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhY 52 (100)
|++-.+||=++=.+.|+..-+......|+|..|+..+++.|
T Consensus 95 t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl 135 (232)
T KOG2483|consen 95 TTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARL 135 (232)
T ss_pred hhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778999999999999999999999999999998887755
No 98
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=28.79 E-value=2.2e+02 Score=20.27 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHH
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHY 52 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhY 52 (100)
++-|.++...|+.+-......++++...-.++++.+
T Consensus 53 l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~ 88 (141)
T PF13874_consen 53 LKEINDKLEELQKHDLETSARLEEARRRHQELSHRL 88 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444433
No 99
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=28.76 E-value=2.9e+02 Score=26.10 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=14.6
Q ss_pred CccchhhHHhHHhHHHHHHH
Q psy17186 7 QPFKFTVSESCDRIKEEFNF 26 (100)
Q Consensus 7 q~~Kft~~es~DRIKeEf~~ 26 (100)
|++-.-..|=.+++|+|||.
T Consensus 503 ~~~~~~L~eK~~kLk~Efnk 522 (762)
T PLN03229 503 QLMHPVLMEKIEKLKDEFNK 522 (762)
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 45555567778899999973
No 100
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.53 E-value=2.2e+02 Score=20.35 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=53.6
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhhhccHH
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMT 93 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM~Ei~KRLn~i~~QvlPfLsqEhQqqv~~AveraKqvt~~ 93 (100)
.|.+..+..|...|+.++.+++.+|-.|.+|-..+...=-..|+...++.+...+- +-...+...-.-++.||..
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~-----~l~~kL~~l~~~~~~vs~e 145 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIE-----ELEEKLEKLRSGSKPVSPE 145 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHhCCCCCCHH
Confidence 45677788889999999999999999998888877665444677777666655431 1222333223345557777
Q ss_pred hHHhh
Q psy17186 94 ELNAI 98 (100)
Q Consensus 94 ELn~i 98 (100)
|.+.+
T Consensus 146 e~~~~ 150 (169)
T PF07106_consen 146 EKEKL 150 (169)
T ss_pred HHHHH
Confidence 76654
No 101
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=28.52 E-value=4e+02 Score=25.14 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=41.4
Q ss_pred hhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHH---H---HHHHHHHHHHHHHHcc
Q psy17186 11 FTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYV---M---TEIAKRLNAIIVQIMP 70 (100)
Q Consensus 11 ft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYv---M---~Ei~KRLn~i~~QvlP 70 (100)
+-..|-.++.+++|.+|..++..++.+.++|-.-=.+|.+-.. | ..|++.++.+...+.|
T Consensus 966 ~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~ 1031 (1163)
T COG1196 966 LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFG 1031 (1163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445667777778888888888777777666555555544331 1 7788888888887766
No 102
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=27.91 E-value=56 Score=20.91 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=15.8
Q ss_pred HHHHHhhhccHHhHHhhhC
Q psy17186 82 TALERAKQVTMTELNAIIG 100 (100)
Q Consensus 82 ~AveraKqvt~~ELn~iig 100 (100)
.|++.-.-||..||..|||
T Consensus 7 ea~~~lqevs~eELd~ilG 25 (51)
T PF04604_consen 7 EALNSLQEVSDEELDQILG 25 (51)
T ss_pred HHHHHHHhcCHHHHHHHhC
Confidence 5666677889999999998
No 103
>PF12347 HJURP_C: Holliday junction regulator protein family C-terminal repeat; InterPro: IPR022102 Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, PF10384 from PFAM, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. ; PDB: 3P57_A 3KOV_A.
Probab=27.89 E-value=20 Score=23.19 Aligned_cols=17 Identities=35% Similarity=0.643 Sum_probs=0.0
Q ss_pred HhHHhHHHHHHHHHHhh
Q psy17186 15 ESCDRIKEEFNFLQAQY 31 (100)
Q Consensus 15 es~DRIKeEf~~lqaqy 31 (100)
+--++|+|||+.|=..|
T Consensus 22 ~kY~eI~eeFD~l~q~y 38 (64)
T PF12347_consen 22 NKYREINEEFDKLHQRY 38 (64)
T ss_dssp -----------------
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 44578999888776655
No 104
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.87 E-value=1.5e+02 Score=18.13 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=18.9
Q ss_pred hHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhH
Q psy17186 16 SCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEM 48 (100)
Q Consensus 16 s~DRIKeEf~~lqaqyhslklEceKlasEK~em 48 (100)
+-+|-|+....|+..++.|..+.+.|-.+-..+
T Consensus 20 ~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 20 SRQRKKQYIEELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666655443333
No 105
>PF08945 Bclx_interact: Bcl-x interacting, BH3 domain; InterPro: IPR015040 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Members of this entry induce apoptosis. The isoform BimL is more potent than the isoform BimEL. They form heterodimers with a number of antiapoptotic Bcl-2 proteins including Mcl-1, Bcl-2, Bcl-X(L), BFL-1, and BHRF1, but do not heterodimerise with proapoptotic proteins such as BAD, BOK, BAX or BAK. They are peripheral membrane proteins, associated with intracytoplasmic membranes. The BH3 motif is required for Bcl-2 binding and cytotoxicity. After antigen-driven expansion, the majority of T cells involved in an immune response die rapidly by apoptosis dependent on the Bcl-2 related proteins; Bim and Bax or Bak []. Bcl-xL regulates Bax and Bim is an important regulator of bcl-x deficiency induced cell death during hematopoiesis and testicular development in mice []. Bim(L) displaces Bcl-x(L) in the mitochondria and promotes Bax translocation during TNFalpha-induced apoptosis []. A potent inhibitor of antiapoptotic Bcl-2 family members, including Bcl-X(L), is AT-101 []. The immunophilin protein FKBP8 and its splice variant are Bcl-XL-interacting proteins and regulate the apoptotic signalling pathways in the RPE []. This protein is a long alpha helix, required for interaction with Bcl-x. It is found in BAM, Bim and Bcl2-like protein 11 []. ; PDB: 2NL9_B 2V6Q_B 3KJ0_B 3KJ1_B 3FDL_B 3D7V_B 3IO8_D 2K7W_B 2VM6_B 3IO9_B ....
Probab=27.86 E-value=66 Score=19.87 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=11.8
Q ss_pred hHHhHHhHHHHHHHH
Q psy17186 13 VSESCDRIKEEFNFL 27 (100)
Q Consensus 13 ~~es~DRIKeEf~~l 27 (100)
|..-+-||-||||.+
T Consensus 20 iAqELRRIgDEFnas 34 (40)
T PF08945_consen 20 IAQELRRIGDEFNAS 34 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 455689999999864
No 106
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=27.32 E-value=94 Score=20.08 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=24.4
Q ss_pred HHHccCCCHHHHHHHHHHHHHhhhccHHhHHh
Q psy17186 66 VQIMPFLSQEHQQQVATALERAKQVTMTELNA 97 (100)
Q Consensus 66 ~QvlPfLsqEhQqqv~~AveraKqvt~~ELn~ 97 (100)
+.||..|+.|.|..|+..+-+...|++.-+..
T Consensus 30 A~VL~~lp~e~r~~v~~Ria~~~~v~~~~i~~ 61 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRIARLESVSPEVIEE 61 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHccCCCCHHHHHH
Confidence 35677888899999999998888888765544
No 107
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=27.25 E-value=83 Score=25.37 Aligned_cols=34 Identities=18% Similarity=0.462 Sum_probs=29.5
Q ss_pred HHHccCCCHHHHHHHHHHHHHhhhccHHhHHhhh
Q psy17186 66 VQIMPFLSQEHQQQVATALERAKQVTMTELNAII 99 (100)
Q Consensus 66 ~QvlPfLsqEhQqqv~~AveraKqvt~~ELn~ii 99 (100)
+.|+..|+.+.++.|..++-+-..|+..+++.++
T Consensus 31 a~VL~~L~~~e~~~l~~~ma~l~~vs~~~~~~vL 64 (339)
T PRK05686 31 AKVLKHLTEEEVQKLSAAMANLRNVSPEQVEAVL 64 (339)
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4677899999999999999999999998888765
No 108
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=27.13 E-value=89 Score=22.46 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=12.8
Q ss_pred HHHHHhhhhhHHHHHHhhhhhhhHH
Q psy17186 25 NFLQAQYHNAKMEVEKLIQEKTEMQ 49 (100)
Q Consensus 25 ~~lqaqyhslklEceKlasEK~emq 49 (100)
+|||.++|..-.+--.-.-||.||+
T Consensus 7 ~fLQ~Ew~r~ErdR~~WeiERaEmk 31 (134)
T PF08232_consen 7 HFLQTEWHRFERDRNQWEIERAEMK 31 (134)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4555555555444444444555554
No 109
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=26.99 E-value=22 Score=24.59 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=0.8
Q ss_pred cchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhh
Q psy17186 9 FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTE 47 (100)
Q Consensus 9 ~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~e 47 (100)
-||++...++.+-.+.+.|+++...||.+++.|..+..+
T Consensus 7 ~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 7 EKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ------------------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 478888888888888888888888888887777554433
No 110
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=26.84 E-value=1.8e+02 Score=18.98 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy17186 19 RIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAK 59 (100)
Q Consensus 19 RIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM~Ei~K 59 (100)
..-.|.+.++.+...++.|.++|-.|...+...--..++|+
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA~ 79 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIAR 79 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 33455677777777777777777777776666544455553
No 111
>PHA00727 hypothetical protein
Probab=26.80 E-value=68 Score=26.44 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q psy17186 21 KEEFNFLQAQYHNAKMEVEK 40 (100)
Q Consensus 21 KeEf~~lqaqyhslklEceK 40 (100)
|.||...-+||.++|.|++|
T Consensus 49 krefelk~~qf~qlkael~k 68 (278)
T PHA00727 49 KREFELKKQQFEQLKAELSK 68 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999876
No 112
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=26.48 E-value=49 Score=22.17 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=23.4
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM 54 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM 54 (100)
.+.+.++++.+|...|+.+...|..++..+......+++..+.
T Consensus 29 ~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~ 71 (131)
T PF05103_consen 29 ELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence 4677889999999999999999999999998888888887655
No 113
>PF15497 SNAPc19: snRNA-activating protein complex subunit 19, SNAPc subunit 19
Probab=26.37 E-value=81 Score=21.85 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=16.1
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHH
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEV 38 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEc 38 (100)
+.+.||+. -++.|.++||.|=
T Consensus 7 ~~L~~i~~---~i~~qLN~LkVEE 27 (91)
T PF15497_consen 7 EKLLKILP---KIQDQLNRLKVEE 27 (91)
T ss_pred HHHHHHHH---HHHHHHHHHHHHH
Confidence 56677776 5788999999873
No 114
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=26.25 E-value=2.3e+02 Score=21.22 Aligned_cols=30 Identities=33% Similarity=0.414 Sum_probs=21.3
Q ss_pred hhhHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy17186 32 HNAKMEVEKLIQEKTEMQRHYVMTEIAKRLNA 63 (100)
Q Consensus 32 hslklEceKlasEK~emqRhYvM~Ei~KRLn~ 63 (100)
..-+.-.||+.+|++-+||-| +||-+--|-
T Consensus 67 ~~w~~~rEki~~e~eaLQ~IY--~eie~~ynq 96 (125)
T PF13256_consen 67 VEWKQGREKIVAEREALQNIY--TEIEDYYNQ 96 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 333444899999999999998 555554443
No 115
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=26.17 E-value=62 Score=20.85 Aligned_cols=19 Identities=47% Similarity=0.756 Sum_probs=14.2
Q ss_pred ccCCCHHHHHHHHHHHHHhhhc
Q psy17186 69 MPFLSQEHQQQVATALERAKQV 90 (100)
Q Consensus 69 lPfLsqEhQqqv~~AveraKqv 90 (100)
+|-||.|.||+ ||||-.++
T Consensus 5 lp~LtHeeQQ~---AvE~Iq~L 23 (51)
T PF03701_consen 5 LPSLTHEEQQQ---AVERIQEL 23 (51)
T ss_pred CCCCCHHHHHH---HHHHHHHH
Confidence 79999999986 66665443
No 116
>KOG0018|consensus
Probab=26.12 E-value=3.4e+02 Score=26.89 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=54.3
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH-----HHHHHHHHHHHHHHcc----CCCHHHHHHHHHHHH
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM-----TEIAKRLNAIIVQIMP----FLSQEHQQQVATALE 85 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM-----~Ei~KRLn~i~~QvlP----fLsqEhQqqv~~Ave 85 (100)
.+..|+...-++|-+...+++.+.+-++.+...+++-|++ +|..++|+.+..|+.- +---+-.+....|||
T Consensus 416 ~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave 495 (1141)
T KOG0018|consen 416 ESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVE 495 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHH
Confidence 3445666666677777778888888888888888898988 7888888888888744 223345566677777
Q ss_pred Hhhhc
Q psy17186 86 RAKQV 90 (100)
Q Consensus 86 raKqv 90 (100)
.-|-.
T Consensus 496 ~lKr~ 500 (1141)
T KOG0018|consen 496 ALKRL 500 (1141)
T ss_pred HHHHh
Confidence 66654
No 117
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=26.04 E-value=2.3e+02 Score=24.89 Aligned_cols=45 Identities=29% Similarity=0.398 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHH------HHHHHHHHHHHHHH
Q psy17186 20 IKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYV------MTEIAKRLNAIIVQ 67 (100)
Q Consensus 20 IKeEf~~lqaqyhslklEceKlasEK~emqRhYv------M~Ei~KRLn~i~~Q 67 (100)
+++|=..|.+....||.|+++| +.||-|.-| |.++++++-.|+.-
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerL---E~e~l~s~V~E~vet~dv~~d~i~Kimnk 87 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERL---ENEMLRSHVCEDVETNDVIYDKIVKIMNK 87 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH---HHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555 445555322 25566666665554
No 118
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=25.88 E-value=2.1e+02 Score=25.18 Aligned_cols=53 Identities=15% Similarity=0.274 Sum_probs=35.6
Q ss_pred HHhHH----HHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH---------HHHHHHHHHHHHHHc
Q psy17186 17 CDRIK----EEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM---------TEIAKRLNAIIVQIM 69 (100)
Q Consensus 17 ~DRIK----eEf~~lqaqyhslklEceKlasEK~emqRhYvM---------~Ei~KRLn~i~~Qvl 69 (100)
.+.++ ++|.||..|+..|....+.|.....+|.+..-- ..|.+.++.++..+.
T Consensus 984 ~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf 1049 (1179)
T TIGR02168 984 LGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVF 1049 (1179)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556 889999999999888888877666665544321 456666666665543
No 119
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=25.87 E-value=1.2e+02 Score=25.35 Aligned_cols=56 Identities=23% Similarity=0.531 Sum_probs=30.1
Q ss_pred hHHhHHhH-HHHHHHHHHhhhhhHHHHHHhhhh---hhhHHHHHHH--HHHHHHHHHHHHHH
Q psy17186 13 VSESCDRI-KEEFNFLQAQYHNAKMEVEKLIQE---KTEMQRHYVM--TEIAKRLNAIIVQI 68 (100)
Q Consensus 13 ~~es~DRI-KeEf~~lqaqyhslklEceKlasE---K~emqRhYvM--~Ei~KRLn~i~~Qv 68 (100)
+-+-.|+| +....-+..|+..|+++-.||.-. -.+.|.||+. .|.-||+..+..+.
T Consensus 176 l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L 237 (289)
T COG4985 176 LRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTEL 237 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 234455677777777775444321 2455666655 55556665555443
No 120
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=25.62 E-value=65 Score=25.40 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=14.2
Q ss_pred hhHHHHHHH-----HHHHHHHH
Q psy17186 46 TEMQRHYVM-----TEIAKRLN 62 (100)
Q Consensus 46 ~emqRhYvM-----~Ei~KRLn 62 (100)
+.+||.|+| .|-|.|||
T Consensus 145 EhIqrvl~e~~~NiSeTARrL~ 166 (182)
T COG4567 145 EHIQRVLEECEGNISETARRLN 166 (182)
T ss_pred HHHHHHHHHhCCCHHHHHHHhh
Confidence 357899998 88899988
No 121
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=25.53 E-value=2.2e+02 Score=19.15 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=33.0
Q ss_pred HHhHHhHHHHHHHHH-HhhhhhHHHHHHhhh----hhhhHHHHHHH--------------HHHHHHHHHHHHHHccCCCH
Q psy17186 14 SESCDRIKEEFNFLQ-AQYHNAKMEVEKLIQ----EKTEMQRHYVM--------------TEIAKRLNAIIVQIMPFLSQ 74 (100)
Q Consensus 14 ~es~DRIKeEf~~lq-aqyhslklEceKlas----EK~emqRhYvM--------------~Ei~KRLn~i~~QvlPfLsq 74 (100)
.+.+|.+-.+|---. +...++-.+.++++. +....-.+|+- .| .+||+.|+. .-+++
T Consensus 3 i~~lD~la~~f~~~~~~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E-~~RL~~lL~---~~l~~ 78 (95)
T PF07749_consen 3 IEELDELAAEFVAASDDEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKE-IARLERLLE---GKLSP 78 (95)
T ss_dssp -HHHHHHHHHHHHS-CHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHH-HHHHHHHHH---SSS-H
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHH-HHHHHHHHh---ccCCH
Confidence 467788877774443 233333334444433 22267788854 66 469999988 66665
Q ss_pred H
Q psy17186 75 E 75 (100)
Q Consensus 75 E 75 (100)
+
T Consensus 79 ~ 79 (95)
T PF07749_consen 79 E 79 (95)
T ss_dssp H
T ss_pred H
Confidence 5
No 122
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.51 E-value=1.7e+02 Score=23.41 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=7.1
Q ss_pred HHhhhccHHhHHh
Q psy17186 85 ERAKQVTMTELNA 97 (100)
Q Consensus 85 eraKqvt~~ELn~ 97 (100)
+.-+..|..|+..
T Consensus 268 ~~~r~~t~~Ev~~ 280 (325)
T PF08317_consen 268 EECRGWTRSEVKR 280 (325)
T ss_pred HHhcCCCHHHHHH
Confidence 3445556666654
No 123
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=25.21 E-value=1.6e+02 Score=22.15 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=27.6
Q ss_pred chhhHHh----HHhHHHHHHHHHHhhhhhHHHHHHhhh
Q psy17186 10 KFTVSES----CDRIKEEFNFLQAQYHNAKMEVEKLIQ 43 (100)
Q Consensus 10 Kft~~es----~DRIKeEf~~lqaqyhslklEceKlas 43 (100)
-|.|.|+ |++++.|+..+..+....=.++|+|..
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~ 55 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEK 55 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666665 789999999999999888888888754
No 124
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=24.82 E-value=1.8e+02 Score=25.66 Aligned_cols=70 Identities=24% Similarity=0.249 Sum_probs=47.2
Q ss_pred cchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH------HHHHHHHH----HHHHHH---ccCCCHH
Q psy17186 9 FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM------TEIAKRLN----AIIVQI---MPFLSQE 75 (100)
Q Consensus 9 ~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM------~Ei~KRLn----~i~~Qv---lPfLsqE 75 (100)
||=.+..-+.||+||| ++...-|..+|.-=..+|++++.+=-| .|..|+.+ .-|.-+ +--+.||
T Consensus 200 ~kkq~l~le~~l~eEy---~rkm~aL~~~c~lE~r~k~e~~~qre~a~~~eaeel~k~~~e~~a~e~~~LL~~lH~leqe 276 (429)
T PF12297_consen 200 FKKQFLGLEKRLQEEY---DRKMVALTAECNLETRKKMEAQHQREMAEMEEAEELLKHASERSAAECSSLLRKLHGLEQE 276 (429)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhHHHHHHHHHHHHhhhHH
Confidence 4446778899999998 677888999999888899888766655 23333322 122222 4467788
Q ss_pred HHHHHH
Q psy17186 76 HQQQVA 81 (100)
Q Consensus 76 hQqqv~ 81 (100)
|.++-+
T Consensus 277 ~L~~~L 282 (429)
T PF12297_consen 277 HLRRSL 282 (429)
T ss_pred HHHHHH
Confidence 777654
No 125
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.79 E-value=1.5e+02 Score=23.62 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=28.7
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHH
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHY 52 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhY 52 (100)
.-=-||+|..-..|.++...++.++.+|-.|-..++.--
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344799999888888888877777777776666665543
No 126
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.67 E-value=1.5e+02 Score=25.79 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=26.3
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHH
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQ 49 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKlasEK~emq 49 (100)
.+.++.+-+|.+.+..+.++|+.|++++..++.++.
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445677778888888888888888777776666444
No 127
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=24.51 E-value=1.2e+02 Score=27.34 Aligned_cols=33 Identities=12% Similarity=0.282 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHH
Q psy17186 20 IKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHY 52 (100)
Q Consensus 20 IKeEf~~lqaqyhslklEceKlasEK~emqRhY 52 (100)
++...+.-.+--.+|.+|++|+...=.-+|-.|
T Consensus 402 tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry 434 (527)
T PF15066_consen 402 TQKHLQESRNEKETLQLELKKIKANYVHLQERY 434 (527)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 333333333333444444444444444444444
No 128
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=24.48 E-value=2.2e+02 Score=21.82 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=23.1
Q ss_pred HHHHHHhhhhhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17186 24 FNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAKRLNAIIV 66 (100)
Q Consensus 24 f~~lqaqyhslklEceKlasEK~emqRhYvM~Ei~KRLn~i~~ 66 (100)
+..+.+++-.||.|..+|..+..++.. +.+-+.||..++.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~---l~~en~~L~~lL~ 110 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQ---LEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc
Confidence 445666666677776666665555432 2444566666543
No 129
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=24.43 E-value=5.4e+02 Score=23.40 Aligned_cols=34 Identities=29% Similarity=0.553 Sum_probs=27.1
Q ss_pred HHhHHHHHHHHHHhhhh----------hHHHHHHhhhhh-hhHHH
Q psy17186 17 CDRIKEEFNFLQAQYHN----------AKMEVEKLIQEK-TEMQR 50 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhs----------lklEceKlasEK-~emqR 50 (100)
+.+||-+|-.||..|-. +-+|.+|.-++| .++.|
T Consensus 420 lkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeever 464 (527)
T PF15066_consen 420 LKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVER 464 (527)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHH
Confidence 68999999999998865 777888888888 45555
No 130
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=24.31 E-value=2.6e+02 Score=19.65 Aligned_cols=58 Identities=33% Similarity=0.474 Sum_probs=30.7
Q ss_pred HHhHHhHHHHHH-HHHHhhhhhHHH-HHHhhhhhhhHHHHHH----HHHHHHHHHHHHHHHccC
Q psy17186 14 SESCDRIKEEFN-FLQAQYHNAKME-VEKLIQEKTEMQRHYV----MTEIAKRLNAIIVQIMPF 71 (100)
Q Consensus 14 ~es~DRIKeEf~-~lqaqyhslklE-ceKlasEK~emqRhYv----M~Ei~KRLn~i~~QvlPf 71 (100)
+-+.||..|=.. |+|--..|-+-| +=.+-.|-.+|-|+-. -.+.+..||+||.|++.+
T Consensus 12 S~AID~mnEGLD~fI~lYNeSe~DepLiql~detael~~~A~~~yG~e~~n~klN~iIkqiLs~ 75 (84)
T PF11458_consen 12 STAIDRMNEGLDTFIQLYNESEKDEPLIQLEDETAELIRQAREKYGQEKLNEKLNAIIKQILSI 75 (84)
T ss_pred HHHHHHHHhhHHHHHHHHcccccccchhhcchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc
Confidence 445566555443 222222332222 2223334444444432 278899999999999763
No 131
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.24 E-value=2.6e+02 Score=19.64 Aligned_cols=37 Identities=14% Similarity=0.398 Sum_probs=25.2
Q ss_pred hHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHH
Q psy17186 13 VSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQ 49 (100)
Q Consensus 13 ~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emq 49 (100)
+.|.++++.+....|.++...||..+..|-.|-.++.
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777666655554
No 132
>PF14044 NETI: NETI protein
Probab=23.67 E-value=47 Score=21.77 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=10.7
Q ss_pred hhHHhHHhHHHH
Q psy17186 12 TVSESCDRIKEE 23 (100)
Q Consensus 12 t~~es~DRIKeE 23 (100)
||.|-|||+++|
T Consensus 9 TI~~CL~RM~~e 20 (57)
T PF14044_consen 9 TISDCLARMKKE 20 (57)
T ss_pred cHHHHHHHHHHc
Confidence 789999999986
No 133
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.61 E-value=2.5e+02 Score=19.31 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=15.6
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHHHHhhhh
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEVEKLIQE 44 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEceKlasE 44 (100)
+++...+++.+.++.+...++.++.|.+.|
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 109 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEE 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555443
No 134
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=23.45 E-value=1.1e+02 Score=17.57 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhh--ccHHhHHhhhC
Q psy17186 76 HQQQVATALERAKQ--VTMTELNAIIG 100 (100)
Q Consensus 76 hQqqv~~AveraKq--vt~~ELn~iig 100 (100)
.|..|+.++....- +|+.||...+|
T Consensus 6 ~q~~vL~~l~~~~~~~~t~~~la~~l~ 32 (62)
T PF12802_consen 6 SQFRVLMALARHPGEELTQSELAERLG 32 (62)
T ss_dssp HHHHHHHHHHHSTTSGEEHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHC
Confidence 47788899999888 89988876543
No 135
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=23.45 E-value=57 Score=23.04 Aligned_cols=14 Identities=43% Similarity=0.475 Sum_probs=12.4
Q ss_pred hhhHHhHHhHHHHH
Q psy17186 11 FTVSESCDRIKEEF 24 (100)
Q Consensus 11 ft~~es~DRIKeEf 24 (100)
.|++|.|++||++.
T Consensus 29 ~tVLd~L~~Ik~~~ 42 (110)
T PF13085_consen 29 MTVLDALNYIKEEQ 42 (110)
T ss_dssp SBHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHhcc
Confidence 48999999999974
No 136
>KOG2909|consensus
Probab=23.43 E-value=1.4e+02 Score=26.01 Aligned_cols=39 Identities=33% Similarity=0.455 Sum_probs=28.6
Q ss_pred ccchhhHHhHHhHHHHHHHH-------HHhhhhhHHHHHHhhhhhh
Q psy17186 8 PFKFTVSESCDRIKEEFNFL-------QAQYHNAKMEVEKLIQEKT 46 (100)
Q Consensus 8 ~~Kft~~es~DRIKeEf~~l-------qaqyhslklEceKlasEK~ 46 (100)
|++-|+.+..|+|--|...+ ++-|+++|-+|++|...++
T Consensus 114 ~~~~si~~iid~I~~e~~qie~Dlk~r~a~yn~ak~nl~nlerK~~ 159 (381)
T KOG2909|consen 114 PTNQSIKEIIDLISKEIAQIENDLKTRAAAYNNAKGNLQNLERKKT 159 (381)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcc
Confidence 45557788888887776655 5678899999998865443
No 137
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.21 E-value=1.9e+02 Score=20.02 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=14.5
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHHHHhhh
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEVEKLIQ 43 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEceKlas 43 (100)
++.+.+.++..+++.++..+...+..+..
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 108 KALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444443
No 138
>PHA00489 scaffolding protein
Probab=23.18 E-value=1.9e+02 Score=20.93 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=24.6
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEceKlasEK~emqR 50 (100)
|.+-.+.+.|-..-..|..+..-.+|++.||..++-
T Consensus 27 eaLqqlr~~ygSf~sEy~elT~a~eKl~aek~DLiv 62 (101)
T PHA00489 27 EALQQLRESYGSFHSEYEELTEALEKLTAEKEDLIV 62 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 445555555555555566666678999999998875
No 139
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=23.10 E-value=1.1e+02 Score=24.88 Aligned_cols=34 Identities=15% Similarity=0.357 Sum_probs=30.0
Q ss_pred HHHccCCCHHHHHHHHHHHHHhhhccHHhHHhhh
Q psy17186 66 VQIMPFLSQEHQQQVATALERAKQVTMTELNAII 99 (100)
Q Consensus 66 ~QvlPfLsqEhQqqv~~AveraKqvt~~ELn~ii 99 (100)
+.|+-.|+++..+++..++.+-+.|+..+++.|+
T Consensus 28 a~vlk~L~~~ei~~l~~~m~~l~~v~~~~~~~vl 61 (338)
T TIGR00207 28 AEVFKHLSQEEIETLSAEIANVTQIDNQQKDDVL 61 (338)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4567789999999999999999999999988875
No 140
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=22.99 E-value=1.2e+02 Score=21.77 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.7
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhhh
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLIQ 43 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKlas 43 (100)
.+..-|+|...+-|+...+.||+.+|-|--
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKievLLD 100 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIEVLLD 100 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999999999999999999998743
No 141
>PRK10772 cell division protein FtsL; Provisional
Probab=22.56 E-value=1.8e+02 Score=20.74 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=28.0
Q ss_pred hHHhHHHHHHHHHHhhhhhHHH---------HHHhhhhhhhHHH
Q psy17186 16 SCDRIKEEFNFLQAQYHNAKME---------VEKLIQEKTEMQR 50 (100)
Q Consensus 16 s~DRIKeEf~~lqaqyhslklE---------ceKlasEK~emqR 50 (100)
-+|+...|-+.|+-.|-+|.+| .|++|.++=.|.|
T Consensus 53 ele~l~~e~~~Le~Ew~~L~LEqstla~hsRIE~iA~~~L~M~~ 96 (108)
T PRK10772 53 EREQLVLERDALDIEWRNLILEENALGDHSRVERIATEKLQMQH 96 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCC
Confidence 3677777888888888888888 8888888887764
No 142
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=22.55 E-value=2e+02 Score=20.54 Aligned_cols=42 Identities=33% Similarity=0.333 Sum_probs=29.1
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHH-----HHHhhhhhhhHHHHHHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKME-----VEKLIQEKTEMQRHYVM 54 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklE-----ceKlasEK~emqRhYvM 54 (100)
|++|.+|.||..|..+-+--..-|.| |=-| .||.|-.|.|-.
T Consensus 18 SvsEVL~~~k~N~D~~~aL~~ETKaEr~~R~~I~L-A~k~Ek~r~~~t 64 (97)
T PF11043_consen 18 SVSEVLDNIKNNYDAFMALPPETKAERMYRRDIQL-AEKQEKERINQT 64 (97)
T ss_pred cHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 78999999999998876665555655 2223 356666666644
No 143
>KOG4098|consensus
Probab=22.45 E-value=1.1e+02 Score=23.35 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=17.2
Q ss_pred HHHHHhhhhhHHHHHHhhhhhhh
Q psy17186 25 NFLQAQYHNAKMEVEKLIQEKTE 47 (100)
Q Consensus 25 ~~lqaqyhslklEceKlasEK~e 47 (100)
+-++++|.++|.|+.-|+++=++
T Consensus 18 ~~v~a~yn~~r~el~~ia~ki~~ 40 (140)
T KOG4098|consen 18 QAVVAKYNALRSELQQIASKITD 40 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888877654
No 144
>PF14645 Chibby: Chibby family
Probab=22.38 E-value=1.3e+02 Score=21.44 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=25.2
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhh
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLI 42 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKla 42 (100)
.+.--|++++.+.|+...+-||++||=|-
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lklk~elLl 98 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLKLKIELLL 98 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999873
No 145
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=22.35 E-value=2e+02 Score=18.24 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=14.7
Q ss_pred HHHhhhhhhhHHHHHH---H--HHHHHHHHHHH
Q psy17186 38 VEKLIQEKTEMQRHYV---M--TEIAKRLNAII 65 (100)
Q Consensus 38 ceKlasEK~emqRhYv---M--~Ei~KRLn~i~ 65 (100)
|+-|.+=|.+++|++- + .+|-.-|+.||
T Consensus 19 c~~L~kykeeL~~p~~EA~~f~~~ie~qL~~Lt 51 (52)
T PF03791_consen 19 CDMLVKYKEELQRPFQEAMEFCREIEQQLSSLT 51 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555666677662 1 44444444443
No 146
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=22.30 E-value=1.5e+02 Score=21.94 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=21.8
Q ss_pred HHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 25 NFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 25 ~~lqaqyhslklEceKlasEK~emqR 50 (100)
..|+.++..++.|++.|..+|.++.+
T Consensus 60 ~~l~~~l~~~~~el~~le~~k~~id~ 85 (180)
T PF04678_consen 60 RQLRKRLEELRQELAPLEKIKQEIDE 85 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888899999999999988888765
No 147
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=21.93 E-value=1.5e+02 Score=22.79 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=21.0
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVE 39 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEce 39 (100)
++..-++.|.|.+++||+|+..+..|.+
T Consensus 49 ~t~~kL~~I~eQi~~Lq~QA~~ile~~~ 76 (159)
T PF10504_consen 49 NTCNKLEVIAEQIRFLQEQARKILEEAE 76 (159)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344477899999999999988876644
No 148
>PF10826 DUF2551: Protein of unknown function (DUF2551) ; InterPro: IPR020501 This entry contains proteins with no known function.
Probab=21.93 E-value=50 Score=23.00 Aligned_cols=16 Identities=44% Similarity=0.854 Sum_probs=14.2
Q ss_pred chhhHHhHHhHHHHHH
Q psy17186 10 KFTVSESCDRIKEEFN 25 (100)
Q Consensus 10 Kft~~es~DRIKeEf~ 25 (100)
+||+.|..+++++.|+
T Consensus 25 ~~T~~di~e~L~~~f~ 40 (83)
T PF10826_consen 25 KFTTDDIYERLKEKFD 40 (83)
T ss_pred CeeHHHHHHHHHHHcC
Confidence 6899999999999874
No 149
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=21.71 E-value=4.3e+02 Score=22.18 Aligned_cols=65 Identities=11% Similarity=0.268 Sum_probs=39.2
Q ss_pred CCccchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH---ccCCC
Q psy17186 6 GQPFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAKRLNAIIVQI---MPFLS 73 (100)
Q Consensus 6 ~q~~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM~Ei~KRLn~i~~Qv---lPfLs 73 (100)
|+..==+..+-++.++.|++.+......+...-|. -++.-..+=....|.++++.++..| +||+-
T Consensus 75 GNt~Lesal~L~~~L~~eI~~f~~~l~~~~~~~e~---~~~~~~~~~~i~~V~~~ik~LL~rId~aiPlin 142 (302)
T PF05508_consen 75 GNTSLESALPLTKDLRREIDSFDERLEEAAEKEEL---SKSSENQKESIKKVERYIKDLLARIDDAIPLIN 142 (302)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---ccCcchhHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 44443455666888899988888877776664443 2222222333355666777766655 88763
No 150
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=21.69 E-value=1.3e+02 Score=24.43 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=29.7
Q ss_pred HHHccCCCHHHHHHHHHHHHHhhhccHHhHHhhh
Q psy17186 66 VQIMPFLSQEHQQQVATALERAKQVTMTELNAII 99 (100)
Q Consensus 66 ~QvlPfLsqEhQqqv~~AveraKqvt~~ELn~ii 99 (100)
+.++-.|+++..+++..++.+-+.|+..++++++
T Consensus 26 a~vl~~L~~~ei~~l~~~m~~l~~v~~~~~~~vl 59 (334)
T PRK07194 26 AMVMQQLSREEVQRLSQKMARLSGIKVDQARQVL 59 (334)
T ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4567789999999999999999999999988875
No 151
>PRK09750 hypothetical protein; Provisional
Probab=21.63 E-value=47 Score=22.33 Aligned_cols=14 Identities=43% Similarity=0.558 Sum_probs=10.6
Q ss_pred HHHHHHhhhhhhhH
Q psy17186 35 KMEVEKLIQEKTEM 48 (100)
Q Consensus 35 klEceKlasEK~em 48 (100)
|.||||+-|-+.|-
T Consensus 30 k~ECeK~~s~~kEA 43 (64)
T PRK09750 30 KSECEKMLSGKKEA 43 (64)
T ss_pred HHHHHHHhcccccc
Confidence 56999998876653
No 152
>PRK10698 phage shock protein PspA; Provisional
Probab=21.55 E-value=3.8e+02 Score=20.61 Aligned_cols=56 Identities=9% Similarity=0.170 Sum_probs=32.8
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH-------HHHHHHHHHHHHHHHHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR-------HYVMTEIAKRLNAIIVQ 67 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqR-------hYvM~Ei~KRLn~i~~Q 67 (100)
++.+....++.++.-.+++...|+..+.+|-+.=.++.. .|-..+..+++|..++-
T Consensus 96 ~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~ 158 (222)
T PRK10698 96 KLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDS 158 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666666666666666665555555555544444433 33337777788877764
No 153
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.25 E-value=3.8e+02 Score=20.44 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=24.6
Q ss_pred hHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 16 SCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 16 s~DRIKeEf~~lqaqyhslklEceKlasEK~emqR 50 (100)
-.|.+.+|-+.|.+.|..++.|.+-|......+++
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~ 77 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLER 77 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777665555555
No 154
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=21.23 E-value=71 Score=17.99 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=18.8
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHH
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKME 37 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklE 37 (100)
.+.+.||.-|..|...||.=+..
T Consensus 12 ~~~~~ik~~y~~l~~~~HPD~~~ 34 (55)
T cd06257 12 ASDEEIKKAYRKLALKYHPDKNP 34 (55)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCC
Confidence 46788999999999999976643
No 155
>PF10792 DUF2605: Protein of unknown function (DUF2605); InterPro: IPR019728 This entry represents a protein conserved in Cyanobacteria. The function is not known.
Probab=21.04 E-value=1.1e+02 Score=22.00 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=17.1
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q psy17186 69 MPFLSQEHQQQVATALERAKQ 89 (100)
Q Consensus 69 lPfLsqEhQqqv~~AveraKq 89 (100)
++|+|++.|+..+.=|.-|++
T Consensus 35 ~~fls~~eQ~~Ll~Rv~qaq~ 55 (98)
T PF10792_consen 35 ISFLSPEEQSDLLERVKQAQQ 55 (98)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 889999999988877776654
No 156
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.02 E-value=95 Score=29.57 Aligned_cols=28 Identities=29% Similarity=0.441 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHH
Q psy17186 51 HYVMTEIAKRLNAIIVQIMPFLSQEHQQ 78 (100)
Q Consensus 51 hYvM~Ei~KRLn~i~~QvlPfLsqEhQq 78 (100)
.++|.+|.+.|-.++|=++||.+.|-=|
T Consensus 749 ~~~Ly~il~~l~~~lAPilPftaEeiw~ 776 (933)
T COG0060 749 QTTLYHILKALVRLLAPILPFTAEEIWQ 776 (933)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHH
Confidence 4577999999999999999999887433
No 157
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=20.95 E-value=5.4e+02 Score=22.09 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=34.7
Q ss_pred hHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHHHHHc
Q psy17186 16 SCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM-TEIAKRLNAIIVQIM 69 (100)
Q Consensus 16 s~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM-~Ei~KRLn~i~~Qvl 69 (100)
.|.++.+-+...|..+.++..|+..|-.+-.+|...--= ..+-++|+.++..++
T Consensus 29 ~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ 83 (508)
T PF04129_consen 29 ILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIV 83 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 344555556666777777777777776666666543211 666688888888773
No 158
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.81 E-value=5.4e+02 Score=22.14 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q psy17186 55 TEIAKRLNAIIVQI 68 (100)
Q Consensus 55 ~Ei~KRLn~i~~Qv 68 (100)
+|-++=++..+-.+
T Consensus 297 ~eRaRdi~E~~Es~ 310 (395)
T PF10267_consen 297 YERARDIWEVMESC 310 (395)
T ss_pred HHHHhHHHHHHHHH
Confidence 45555555544433
No 159
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.33 E-value=99 Score=20.53 Aligned_cols=19 Identities=42% Similarity=0.749 Sum_probs=13.8
Q ss_pred ccCCCHHHHHHHHHHHHHhhhc
Q psy17186 69 MPFLSQEHQQQVATALERAKQV 90 (100)
Q Consensus 69 lPfLsqEhQqqv~~AveraKqv 90 (100)
+|-|+.|.||. ||||-.++
T Consensus 5 lp~LtHeqQQ~---AVE~Iq~l 23 (60)
T COG3140 5 LPSLTHEQQQK---AVERIQEL 23 (60)
T ss_pred cccccHHHHHH---HHHHHHHH
Confidence 78899988874 67776554
No 160
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=20.22 E-value=4.1e+02 Score=20.39 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=29.3
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM 54 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM 54 (100)
-+-+.+.+-.++.|+++..+|+...+.|-..=.++...|-+
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 34466777777778888888877777777776777766655
Done!