Query psy17186
Match_columns 100
No_of_seqs 71 out of 73
Neff 3.0
Searched_HMMs 29240
Date Sat Aug 17 00:03:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aj5_K Spindle and kinetochore 92.2 0.36 1.2E-05 34.7 5.9 60 12-78 47-111 (123)
2 3euh_A Protein KICB, chromosom 86.4 0.68 2.3E-05 39.1 4.2 34 8-41 159-192 (440)
3 1t98_A KICB protein, chromosom 81.7 2.1 7E-05 34.4 4.9 42 7-48 158-214 (287)
4 2wuj_A Septum site-determining 77.6 2.8 9.7E-05 25.4 3.6 32 12-43 24-55 (57)
5 2yy0_A C-MYC-binding protein; 66.7 8.6 0.00029 23.2 3.9 29 16-44 20-48 (53)
6 3r8n_R 30S ribosomal protein S 66.6 4.3 0.00015 24.9 2.6 20 71-90 27-46 (55)
7 3a7p_A Autophagy protein 16; c 61.1 22 0.00075 26.0 5.9 46 17-62 98-145 (152)
8 3vp9_A General transcriptional 60.9 1.9 6.3E-05 29.4 0.1 39 12-50 11-54 (92)
9 3i1m_R 30S ribosomal protein S 60.3 6.3 0.00022 25.5 2.6 20 71-90 46-65 (75)
10 2vqe_R 30S ribosomal protein S 55.9 8 0.00027 25.7 2.6 20 71-90 57-76 (88)
11 1nkp_B MAX protein, MYC proto- 55.8 28 0.00095 21.7 5.0 40 10-49 35-74 (83)
12 3fx7_A Putative uncharacterize 53.8 22 0.00075 24.1 4.5 53 16-74 21-77 (94)
13 2eqb_B RAB guanine nucleotide 51.9 26 0.00088 23.9 4.7 31 15-45 5-35 (97)
14 3trt_A Vimentin; cytoskeleton, 49.8 26 0.00089 21.4 4.1 21 19-39 53-73 (77)
15 1l8d_A DNA double-strand break 49.2 43 0.0015 21.3 5.3 46 6-51 54-100 (112)
16 2l5g_A GPS2 protein, G protein 47.9 21 0.00073 21.0 3.2 23 15-37 8-30 (38)
17 1nlw_A MAD protein, MAX dimeri 47.6 51 0.0017 20.9 5.9 42 9-50 34-75 (80)
18 1go4_E MAD1 (mitotic arrest de 46.7 23 0.00079 24.2 3.8 28 13-47 10-37 (100)
19 2wt7_A Proto-oncogene protein 45.6 44 0.0015 20.1 4.6 30 18-47 26-55 (63)
20 1x8y_A Lamin A/C; structural p 42.9 63 0.0022 20.6 6.9 46 9-54 15-60 (86)
21 1use_A VAsp, vasodilator-stimu 40.4 59 0.002 19.5 4.7 30 15-50 7-36 (45)
22 3tnu_B Keratin, type II cytosk 40.0 35 0.0012 22.9 3.9 37 14-50 28-64 (129)
23 1fxk_A Prefoldin; archaeal pro 39.8 53 0.0018 20.5 4.5 30 20-49 6-35 (107)
24 2kxh_B Peptide of FAR upstream 39.2 11 0.00038 21.3 1.0 12 80-91 10-21 (31)
25 3viq_B Mating-type switching p 39.0 84 0.0029 20.9 7.2 37 18-54 4-46 (85)
26 1hlo_A Protein (transcription 37.8 47 0.0016 20.5 4.0 34 10-43 45-78 (80)
27 1ik9_A DNA repair protein XRCC 35.1 56 0.0019 24.3 4.6 35 17-51 141-175 (213)
28 3w03_C DNA repair protein XRCC 33.5 75 0.0026 23.6 5.1 38 12-49 142-179 (184)
29 3kj0_B BCL-2-like protein 11; 33.3 33 0.0011 18.8 2.3 17 11-27 8-24 (27)
30 2p0n_A Hypothetical protein NM 32.1 1.1E+02 0.0039 20.3 6.0 32 12-43 13-44 (172)
31 2v4h_A NF-kappa-B essential mo 32.1 72 0.0025 22.2 4.5 12 38-49 85-96 (110)
32 1gk4_A Vimentin; intermediate 32.0 97 0.0033 19.5 6.9 42 12-53 16-57 (84)
33 3tnu_A Keratin, type I cytoske 31.6 40 0.0014 22.8 3.1 37 14-50 30-66 (131)
34 4etp_A Kinesin-like protein KA 31.5 1.1E+02 0.0036 24.4 6.0 46 17-62 5-51 (403)
35 1uru_A Amphiphysin; endocytosi 31.4 1.1E+02 0.0038 21.1 5.5 32 14-48 172-203 (244)
36 2wt7_B Transcription factor MA 30.8 1.2E+02 0.0041 20.2 5.4 26 25-50 51-76 (90)
37 3erm_A Uncharacterized conserv 28.7 1.4E+02 0.0047 20.2 5.6 41 41-81 19-59 (91)
38 2wh6_B BCL-2-like protein 11; 27.8 32 0.0011 18.7 1.6 15 13-27 8-22 (26)
39 3bas_A Myosin heavy chain, str 27.2 1.2E+02 0.0042 19.2 7.2 32 22-53 14-45 (89)
40 1ci6_A Transcription factor AT 26.8 1.1E+02 0.0037 18.5 4.2 28 17-44 25-52 (63)
41 3zcc_A HAMP, osmolarity sensor 26.6 95 0.0032 17.7 5.0 45 21-66 36-80 (114)
42 3etw_A Adhesin A; antiparallel 25.9 1.7E+02 0.0058 20.3 5.8 20 21-40 70-89 (119)
43 3hjl_A Flagellar motor switch 25.6 43 0.0015 26.3 2.7 34 66-99 28-61 (329)
44 3swk_A Vimentin; cytoskeleton, 25.3 1.4E+02 0.0047 19.1 4.7 38 25-63 3-47 (86)
45 2v66_B Nuclear distribution pr 25.3 1.3E+02 0.0045 20.6 4.8 34 17-50 19-56 (111)
46 1pq1_B BCL2-like protein 11; B 25.3 43 0.0015 19.1 1.9 14 13-26 8-21 (33)
47 1x79_B RAB GTPase binding effe 24.9 1.7E+02 0.0059 20.1 7.8 33 20-52 4-36 (112)
48 1qbj_A Protein (double-strande 24.7 66 0.0022 20.2 3.0 28 73-100 8-38 (81)
49 1nkp_A C-MYC, MYC proto-oncoge 24.3 1.4E+02 0.0049 19.0 4.9 40 10-49 40-79 (88)
50 1fxk_C Protein (prefoldin); ar 24.1 1.5E+02 0.005 19.3 4.8 37 8-44 81-117 (133)
51 2jo8_A Serine/threonine-protei 23.7 1E+02 0.0035 18.8 3.6 27 24-53 12-38 (51)
52 3jsv_C NF-kappa-B essential mo 23.3 24 0.00083 24.0 0.7 21 31-51 56-76 (94)
53 1s2x_A CAG-Z; CAG pathogenicit 23.2 61 0.0021 24.4 3.0 42 55-96 162-204 (206)
54 1a93_A Coiled coil, LZ, MYC pr 22.4 48 0.0016 18.8 1.8 21 31-51 2-22 (34)
55 2wt7_B Transcription factor MA 22.1 1.2E+02 0.0039 20.2 3.9 36 17-52 50-85 (90)
56 3m91_A Proteasome-associated A 21.0 1.2E+02 0.004 18.3 3.4 10 23-32 17-26 (51)
57 3bbn_R Ribosomal protein S18; 20.3 16 0.00054 25.2 -0.7 21 71-91 53-73 (103)
58 2w6b_A RHO guanine nucleotide 20.2 1.7E+02 0.0058 18.3 6.5 29 12-40 7-35 (56)
59 2zvf_A Alanyl-tRNA synthetase; 20.1 1.7E+02 0.0058 19.5 4.5 27 12-38 29-55 (171)
60 3htk_A Structural maintenance 20.0 1.4E+02 0.0047 17.1 5.0 27 17-43 21-47 (60)
No 1
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=92.19 E-value=0.36 Score=34.65 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=43.7
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhh-hhHHHHHHH----HHHHHHHHHHHHHHccCCCHHHHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEK-TEMQRHYVM----TEIAKRLNAIIVQIMPFLSQEHQQ 78 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceKlasEK-~emqRhYvM----~Ei~KRLn~i~~QvlPfLsqEhQq 78 (100)
++++-+.+||++ |..|+..|+.+|.|+ .-|.+-... ..+..||+.-..--+|.|+.|.+.
T Consensus 47 ~Ll~~LsaIk~r-------y~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~td~el~plteeE~~ 111 (123)
T 4aj5_K 47 TLLKELSVIKSR-------YQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKT 111 (123)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhHHH
Confidence 345556666665 777777888888887 556666554 788888887666669999999774
No 2
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=86.38 E-value=0.68 Score=39.11 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=30.6
Q ss_pred ccchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHh
Q psy17186 8 PFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKL 41 (100)
Q Consensus 8 ~~Kft~~es~DRIKeEf~~lqaqyhslklEceKl 41 (100)
|+|+|+.|.+|+|---=..|-+|-||.|.|+-+|
T Consensus 159 ~LkySVaeifd~Idl~QR~mDeQQ~~vk~eIA~L 192 (440)
T 3euh_A 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQL 192 (440)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999995444
No 3
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=81.69 E-value=2.1 Score=34.44 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=34.7
Q ss_pred CccchhhHHhHHhHHHHHHHHHHhhhhhHHH---------------HHHhhhhhhhH
Q psy17186 7 QPFKFTVSESCDRIKEEFNFLQAQYHNAKME---------------VEKLIQEKTEM 48 (100)
Q Consensus 7 q~~Kft~~es~DRIKeEf~~lqaqyhslklE---------------ceKlasEK~em 48 (100)
.|+|+||.|..|+|----.-|..|-++.|.| ||+|-+|-+--
T Consensus 158 apLkySVaeifd~IDl~QR~mDeQQ~~Vk~~IA~LL~qDW~~AI~~CE~LL~eTs~t 214 (287)
T 1t98_A 158 APLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGT 214 (287)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hheeeeHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Confidence 3799999999999988777888888888877 88888776543
No 4
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=77.56 E-value=2.8 Score=25.40 Aligned_cols=32 Identities=13% Similarity=0.303 Sum_probs=26.3
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhh
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQ 43 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceKlas 43 (100)
-|-+.+|+|-+++..|.++..+|+.+++.|..
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999988753
No 5
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.67 E-value=8.6 Score=23.24 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=23.7
Q ss_pred hHHhHHHHHHHHHHhhhhhHHHHHHhhhh
Q psy17186 16 SCDRIKEEFNFLQAQYHNAKMEVEKLIQE 44 (100)
Q Consensus 16 s~DRIKeEf~~lqaqyhslklEceKlasE 44 (100)
-.|.+|-|...|++.|..|+.+++.|.++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788889999999999998888877653
No 6
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=66.60 E-value=4.3 Score=24.92 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHhhhc
Q psy17186 71 FLSQEHQQQVATALERAKQV 90 (100)
Q Consensus 71 fLsqEhQqqv~~AveraKqv 90 (100)
-++..||.++..|+.||+..
T Consensus 27 Glc~k~QR~l~~AIKrAR~~ 46 (55)
T 3r8n_R 27 GTRAKYQRQLARAIKRARYL 46 (55)
T ss_dssp CCCHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHh
Confidence 46788999999999999875
No 7
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=61.08 E-value=22 Score=26.04 Aligned_cols=46 Identities=9% Similarity=0.196 Sum_probs=31.0
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH--HHHHHHHH
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM--TEIAKRLN 62 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM--~Ei~KRLn 62 (100)
.+.++||+.-|+.|+..+.....+|-.|-.++-..+|- ..=|.++|
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN 145 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMN 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888888887776666666654 33344444
No 8
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=60.89 E-value=1.9 Score=29.38 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=24.4
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHH----HHH-HhhhhhhhHHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKM----EVE-KLIQEKTEMQR 50 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslkl----Ece-KlasEK~emqR 50 (100)
-+.|.||-||-||..+.....+.|. |+| |+++-=.||+.
T Consensus 11 Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~ 54 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQ 54 (92)
T ss_dssp ------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4589999999999999888877663 444 56666666653
No 9
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=60.26 E-value=6.3 Score=25.54 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHhhhc
Q psy17186 71 FLSQEHQQQVATALERAKQV 90 (100)
Q Consensus 71 fLsqEhQqqv~~AveraKqv 90 (100)
-++..||.+++.||.||+.+
T Consensus 46 Glc~k~QR~l~~AIKrAR~~ 65 (75)
T 3i1m_R 46 GTRAKYQRQLARAIKRARYL 65 (75)
T ss_dssp CCCHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHh
Confidence 46778999999999999876
No 10
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=55.90 E-value=8 Score=25.69 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHhhhc
Q psy17186 71 FLSQEHQQQVATALERAKQV 90 (100)
Q Consensus 71 fLsqEhQqqv~~AveraKqv 90 (100)
-++..||.+++.||.||+.+
T Consensus 57 Glc~k~QR~l~~AIKrAR~l 76 (88)
T 2vqe_R 57 GLSGKEQRILAKTIKRARIL 76 (88)
T ss_dssp CCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 46778999999999999976
No 11
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=55.81 E-value=28 Score=21.66 Aligned_cols=40 Identities=13% Similarity=0.347 Sum_probs=27.6
Q ss_pred chhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHH
Q psy17186 10 KFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQ 49 (100)
Q Consensus 10 Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emq 49 (100)
|.+-.+.++.--+=...|+.+...|+.|.+.|..+...+.
T Consensus 35 k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 35 KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555688888888888888877665554
No 12
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=53.82 E-value=22 Score=24.12 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=35.0
Q ss_pred hHHhHHHHHHHHHHhhhhhH----HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCCCH
Q psy17186 16 SCDRIKEEFNFLQAQYHNAK----MEVEKLIQEKTEMQRHYVMTEIAKRLNAIIVQIMPFLSQ 74 (100)
Q Consensus 16 s~DRIKeEf~~lqaqyhslk----lEceKlasEK~emqRhYvM~Ei~KRLn~i~~QvlPfLsq 74 (100)
..|.+.++-+.|.+++.+|+ -++.|-+.+=.+. ...-||+...+...+|||-.
T Consensus 21 F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l------~s~l~~f~e~a~e~vp~L~~ 77 (94)
T 3fx7_A 21 FKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNL------KSTFNEFDEAAQEQIAWLKE 77 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHH------HHHHHHHHHhhHHHhHHHHH
Confidence 35667777788888888886 2344444333332 34567888888888999854
No 13
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.94 E-value=26 Score=23.92 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=26.2
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHHHHhhhhh
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEVEKLIQEK 45 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEceKlasEK 45 (100)
..+++.|+++..|+.++.....|+.+|..+=
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4578999999999999999999999986443
No 14
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=49.83 E-value=26 Score=21.37 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHhhhhhHHHHH
Q psy17186 19 RIKEEFNFLQAQYHNAKMEVE 39 (100)
Q Consensus 19 RIKeEf~~lqaqyhslklEce 39 (100)
..|+|...|.-++++|..|++
T Consensus 53 ~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 53 QAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 15
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=49.19 E-value=43 Score=21.31 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=31.7
Q ss_pred CCccchhh-HHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHH
Q psy17186 6 GQPFKFTV-SESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRH 51 (100)
Q Consensus 6 ~q~~Kft~-~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRh 51 (100)
|+++--.. .+..+.+..+...++.++..++.+.+.+..+..++..-
T Consensus 54 gs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 54 GRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544332 34577788888888888888888888887766665543
No 16
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.91 E-value=21 Score=20.96 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=18.2
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHH
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKME 37 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklE 37 (100)
.+++-+||+...|+...++|+-|
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999888888877777765
No 17
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=47.64 E-value=51 Score=20.87 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=31.9
Q ss_pred cchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 9 FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 9 ~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqR 50 (100)
-|.|-++.+.+-.+=...|+..-..+..|.+.|..|..++.+
T Consensus 34 ~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 34 SRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666667999999999999999888777654
No 18
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.67 E-value=23 Score=24.18 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=15.9
Q ss_pred hHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhh
Q psy17186 13 VSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTE 47 (100)
Q Consensus 13 ~~es~DRIKeEf~~lqaqyhslklEceKlasEK~e 47 (100)
..|-++.++.+ ..+|+.|+++|..+|..
T Consensus 10 ~~e~~~~lr~e-------i~~Le~E~~rLr~~~~~ 37 (100)
T 1go4_E 10 SREEADTLRLK-------VEELEGERSRLEEEKRM 37 (100)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 45655666555 45555566666555543
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=45.59 E-value=44 Score=20.12 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=14.9
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHhhhhhhh
Q psy17186 18 DRIKEEFNFLQAQYHNAKMEVEKLIQEKTE 47 (100)
Q Consensus 18 DRIKeEf~~lqaqyhslklEceKlasEK~e 47 (100)
+.+-++...|......|+.+++.|-.|+..
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555444433
No 20
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=42.95 E-value=63 Score=20.59 Aligned_cols=46 Identities=9% Similarity=0.061 Sum_probs=32.8
Q ss_pred cchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHH
Q psy17186 9 FKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVM 54 (100)
Q Consensus 9 ~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM 54 (100)
+.-++.|.=+|..-+...+|....++..++.++-.+-...-|-|-.
T Consensus 15 Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~ 60 (86)
T 1x8y_A 15 KEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQE 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777888888888888999988888875544444455643
No 21
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=40.42 E-value=59 Score=19.54 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=20.5
Q ss_pred HhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 15 ESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 15 es~DRIKeEf~~lqaqyhslklEceKlasEK~emqR 50 (100)
+-+|++|+|. +...+.|+.|+-.|=.+--|
T Consensus 7 ~dle~~KqEI------L~E~RkElqK~K~EIIeAi~ 36 (45)
T 1use_A 7 SDLQRVKQEL------LEEVKKELQKVKEEIIEAFV 36 (45)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 4589999986 56667777776665544444
No 22
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.97 E-value=35 Score=22.90 Aligned_cols=37 Identities=11% Similarity=0.252 Sum_probs=24.7
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqR 50 (100)
.+.+...|+|...+.-+..+|..|++.+-+-|..+.+
T Consensus 28 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~ 64 (129)
T 3tnu_B 28 GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQN 64 (129)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4566778889888888888888888887776665544
No 23
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=39.79 E-value=53 Score=20.52 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhhhhHH
Q psy17186 20 IKEEFNFLQAQYHNAKMEVEKLIQEKTEMQ 49 (100)
Q Consensus 20 IKeEf~~lqaqyhslklEceKlasEK~emq 49 (100)
.-.+|+.++++++.+...+..+-+++.+..
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~ 35 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEMQINETQ 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888888888888888766655543
No 24
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=39.16 E-value=11 Score=21.34 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=9.9
Q ss_pred HHHHHHHhhhcc
Q psy17186 80 VATALERAKQVT 91 (100)
Q Consensus 80 v~~AveraKqvt 91 (100)
-+.|++||+|+-
T Consensus 10 FadA~~RaRQIa 21 (31)
T 2kxh_B 10 FKDALQRARQIA 21 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468999999983
No 25
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=39.01 E-value=84 Score=20.87 Aligned_cols=37 Identities=14% Similarity=0.342 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHhhhh------hhhHHHHHHH
Q psy17186 18 DRIKEEFNFLQAQYHNAKMEVEKLIQE------KTEMQRHYVM 54 (100)
Q Consensus 18 DRIKeEf~~lqaqyhslklEceKlasE------K~emqRhYvM 54 (100)
++|..+...|+++...|..+|..+.++ +....||--+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~ 46 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDL 46 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 456666667777777777777776543 3446666443
No 26
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=37.82 E-value=47 Score=20.55 Aligned_cols=34 Identities=15% Similarity=0.361 Sum_probs=22.7
Q ss_pred chhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhh
Q psy17186 10 KFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQ 43 (100)
Q Consensus 10 Kft~~es~DRIKeEf~~lqaqyhslklEceKlas 43 (100)
|.+-.+.+..--+=...|+.+...|+.|.+.|..
T Consensus 45 k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 45 KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555688888888888777754
No 27
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=35.10 E-value=56 Score=24.28 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=26.8
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHH
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRH 51 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlasEK~emqRh 51 (100)
+.+..+|...++..+..++..+|++.++|.++-..
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777778888999999888764
No 28
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=33.47 E-value=75 Score=23.59 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=29.6
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQ 49 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emq 49 (100)
++.|.+|..-+-.+.|++....|..|-|+|.+|-.+++
T Consensus 142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 142 VIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777888888888888888888766654
No 29
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=33.25 E-value=33 Score=18.79 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=13.3
Q ss_pred hhhHHhHHhHHHHHHHH
Q psy17186 11 FTVSESCDRIKEEFNFL 27 (100)
Q Consensus 11 ft~~es~DRIKeEf~~l 27 (100)
.-|..-+.||-||||..
T Consensus 8 ~wiAqELRRIGDeFN~~ 24 (27)
T 3kj0_B 8 IWYAQELRRIGDEFNAY 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 34567799999999864
No 30
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=32.10 E-value=1.1e+02 Score=20.31 Aligned_cols=32 Identities=9% Similarity=0.062 Sum_probs=27.4
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhh
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQ 43 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceKlas 43 (100)
+..+.+|.|++++..+......|..-++++..
T Consensus 13 ~~~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~ 44 (172)
T 2p0n_A 13 TFAEPIEMLYACHGKVRRFCGQVAMLSDYIAE 44 (172)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999998888888753
No 31
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=32.08 E-value=72 Score=22.24 Aligned_cols=12 Identities=42% Similarity=0.576 Sum_probs=5.9
Q ss_pred HHHhhhhhhhHH
Q psy17186 38 VEKLIQEKTEMQ 49 (100)
Q Consensus 38 ceKlasEK~emq 49 (100)
-||+++||.+++
T Consensus 85 REkl~~eKe~L~ 96 (110)
T 2v4h_A 85 REKLVEKKEYLQ 96 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 445555555443
No 32
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=32.01 E-value=97 Score=19.51 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=27.3
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYV 53 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYv 53 (100)
++.|+=.|...+..-+|+....+..++.++-.+-...-|-|-
T Consensus 16 ~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq 57 (84)
T 1gk4_A 16 QMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQ 57 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667777788888888777776554444444464
No 33
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.62 E-value=40 Score=22.77 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=19.6
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKlasEK~emqR 50 (100)
.|.+...|+|...+.-+..+|..|++.+-+-|..+.+
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~ 66 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLSMKASLEN 66 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4567778888888888888888888887666654443
No 34
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=31.55 E-value=1.1e+02 Score=24.39 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHHHHHH-HHHH
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIA-KRLN 62 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhYvM~Ei~-KRLn 62 (100)
++-+++|...|+.+..++..+++++..+-.++...|...|.. |+|.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~ 51 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLH 51 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777888888888888888888888888888888775543 4443
No 35
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=31.35 E-value=1.1e+02 Score=21.14 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=22.2
Q ss_pred HHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhH
Q psy17186 14 SESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEM 48 (100)
Q Consensus 14 ~es~DRIKeEf~~lqaqyhslklEceKlasEK~em 48 (100)
-+-++.-|++|..+. ..|+.|+..+...+.+.
T Consensus 172 e~el~~ak~~ye~ln---~~L~~eLp~l~~~~~~~ 203 (244)
T 1uru_A 172 REQLEEARRTYEILN---TELHDELPALYDSRILF 203 (244)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHH
Confidence 345777788876554 56777888887766664
No 36
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.77 E-value=1.2e+02 Score=20.17 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=13.0
Q ss_pred HHHHHhhhhhHHHHHHhhhhhhhHHH
Q psy17186 25 NFLQAQYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 25 ~~lqaqyhslklEceKlasEK~emqR 50 (100)
..|.....+|..|.+.|..|...+.+
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~ 76 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLAR 76 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554443
No 37
>3erm_A Uncharacterized conserved protein; APC85034, ppspto1197, seudomonas syringae PV. tomato STR. DC structural genomics, PSI-2; HET: MSE; 2.45A {Pseudomonas syringae PV}
Probab=28.66 E-value=1.4e+02 Score=20.20 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=34.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Q psy17186 41 LIQEKTEMQRHYVMTEIAKRLNAIIVQIMPFLSQEHQQQVA 81 (100)
Q Consensus 41 lasEK~emqRhYvM~Ei~KRLn~i~~QvlPfLsqEhQqqv~ 81 (100)
.-.-|.|-..|-=|-|+|.+|..++.+..|-++..+.-.+.
T Consensus 19 tFtsKKEADAyDKMLdlAd~L~~~L~~~~~~ldE~~~E~l~ 59 (91)
T 3erm_A 19 TFVDRKLADAHDQMLELAELLTDVLIKNVPGLSEKHAEDAS 59 (91)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 66678888999999999999999999999999987665543
No 38
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=27.84 E-value=32 Score=18.72 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=11.9
Q ss_pred hHHhHHhHHHHHHHH
Q psy17186 13 VSESCDRIKEEFNFL 27 (100)
Q Consensus 13 ~~es~DRIKeEf~~l 27 (100)
|..-+.||-||||.+
T Consensus 8 iAqELRRIGDeFN~~ 22 (26)
T 2wh6_B 8 IAQELRRIGDEFNAY 22 (26)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHhhh
Confidence 456689999999853
No 39
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=27.22 E-value=1.2e+02 Score=19.24 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHH
Q psy17186 22 EEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYV 53 (100)
Q Consensus 22 eEf~~lqaqyhslklEceKlasEK~emqRhYv 53 (100)
+|+..+...+..++-.++|.-..+.++...++
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~ 45 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 40
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.79 E-value=1.1e+02 Score=18.45 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=16.4
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhhh
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQE 44 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlasE 44 (100)
++.+.++...|......|+.+++.|-.|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666544
No 41
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=26.56 E-value=95 Score=17.67 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17186 21 KEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAKRLNAIIV 66 (100)
Q Consensus 21 KeEf~~lqaqyhslklEceKlasEK~emqRhYvM~Ei~KRLn~i~~ 66 (100)
++|+..|-..++.+...++++..++.++-.. +--|+..-|+.|-.
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~-~shel~tpl~~i~~ 80 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQLADDGTLLMAG-VSHDLRTPLTRIRL 80 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHcChHHHHHH
Confidence 4556666666666666666655544443211 11444444444443
No 42
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=25.90 E-value=1.7e+02 Score=20.34 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q psy17186 21 KEEFNFLQAQYHNAKMEVEK 40 (100)
Q Consensus 21 KeEf~~lqaqyhslklEceK 40 (100)
|++|+.+=++|.+++.++++
T Consensus 70 k~~y~~l~k~Y~~~~keLd~ 89 (119)
T 3etw_A 70 KSQYQELASKYEDALKKLEA 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777765
No 43
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=25.60 E-value=43 Score=26.31 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=30.5
Q ss_pred HHHccCCCHHHHHHHHHHHHHhhhccHHhHHhhh
Q psy17186 66 VQIMPFLSQEHQQQVATALERAKQVTMTELNAII 99 (100)
Q Consensus 66 ~QvlPfLsqEhQqqv~~AveraKqvt~~ELn~ii 99 (100)
+.|+-+|+++..+++..++-+-+.|+..++++++
T Consensus 28 a~vlk~L~~~ei~~l~~~ma~l~~v~~~~~~~Vl 61 (329)
T 3hjl_A 28 MNIVKELSEEELQKLFALAKDLESVPEEEIENIA 61 (329)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Confidence 4677789999999999999999999999998875
No 44
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.34 E-value=1.4e+02 Score=19.12 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=21.5
Q ss_pred HHHHHhhhhhHHHHHHhhhhhhhHHHH-------HHHHHHHHHHHH
Q psy17186 25 NFLQAQYHNAKMEVEKLIQEKTEMQRH-------YVMTEIAKRLNA 63 (100)
Q Consensus 25 ~~lqaqyhslklEceKlasEK~emqRh-------YvM~Ei~KRLn~ 63 (100)
+.|+.|..++..|-.+|..|-.+|+-. |- .|+++|-.+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE-~E~~~R~~~ 47 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ-EEMLQREEA 47 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 345666666665555555555554432 21 788888654
No 45
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.32 E-value=1.3e+02 Score=20.63 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHHH----hhhhhHHHHHHhhhhhhhHHH
Q psy17186 17 CDRIKEEFNFLQA----QYHNAKMEVEKLIQEKTEMQR 50 (100)
Q Consensus 17 ~DRIKeEf~~lqa----qyhslklEceKlasEK~emqR 50 (100)
+|.+|+-|+..+. +.++|.-|+.+|..++..|+.
T Consensus 19 ~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~ 56 (111)
T 2v66_B 19 VEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHK 56 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555543 345566677777666666654
No 46
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=25.27 E-value=43 Score=19.08 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=11.4
Q ss_pred hHHhHHhHHHHHHH
Q psy17186 13 VSESCDRIKEEFNF 26 (100)
Q Consensus 13 ~~es~DRIKeEf~~ 26 (100)
|..-+.||-||||.
T Consensus 8 IAQELRRIGDeFNa 21 (33)
T 1pq1_B 8 IAQELRRIGDEFNE 21 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhc
Confidence 45668999999985
No 47
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.90 E-value=1.7e+02 Score=20.12 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHH
Q psy17186 20 IKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHY 52 (100)
Q Consensus 20 IKeEf~~lqaqyhslklEceKlasEK~emqRhY 52 (100)
+.++...||++..+++-+++|++.+++++..-+
T Consensus 4 t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w 36 (112)
T 1x79_B 4 TRDQVKKLQLMLRQANDQLEKTMKDKQELEDFI 36 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999998864
No 48
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=24.71 E-value=66 Score=20.18 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHhh---hccHHhHHhhhC
Q psy17186 73 SQEHQQQVATALERAK---QVTMTELNAIIG 100 (100)
Q Consensus 73 sqEhQqqv~~AveraK---qvt~~ELn~iig 100 (100)
+++-+++++.++.... .+|..||-..+|
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg 38 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLG 38 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHC
Confidence 3556677777777666 677777765544
No 49
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.34 E-value=1.4e+02 Score=18.95 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=27.7
Q ss_pred chhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHH
Q psy17186 10 KFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQ 49 (100)
Q Consensus 10 Kft~~es~DRIKeEf~~lqaqyhslklEceKlasEK~emq 49 (100)
|.+-...+++--|=.++|+.+...+..+.+.|..+...+.
T Consensus 40 K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~ 79 (88)
T 1nkp_A 40 KAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLK 79 (88)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666788888888888777766555443
No 50
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.09 E-value=1.5e+02 Score=19.35 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=29.5
Q ss_pred ccchhhHHhHHhHHHHHHHHHHhhhhhHHHHHHhhhh
Q psy17186 8 PFKFTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQE 44 (100)
Q Consensus 8 ~~Kft~~es~DRIKeEf~~lqaqyhslklEceKlasE 44 (100)
-+.+|+.|+.+-+++-..++..+...+.-.++++...
T Consensus 81 ~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~ 117 (133)
T 1fxk_C 81 AIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDI 117 (133)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999998888888888888877776544
No 51
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=23.67 E-value=1e+02 Score=18.77 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=19.1
Q ss_pred HHHHHHhhhhhHHHHHHhhhhhhhHHHHHH
Q psy17186 24 FNFLQAQYHNAKMEVEKLIQEKTEMQRHYV 53 (100)
Q Consensus 24 f~~lqaqyhslklEceKlasEK~emqRhYv 53 (100)
|..|++-..+|-.+.|+ |++++.+.|-
T Consensus 12 ~eEL~~rl~~Ld~~Me~---Ei~elr~RY~ 38 (51)
T 2jo8_A 12 VEDLQKRLLALDPMMEQ---EIEEIRQKYQ 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHH---HHHHHHHHHH
Confidence 34566667777777776 7788888773
No 52
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=23.28 E-value=24 Score=24.05 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=15.7
Q ss_pred hhhhHHHHHHhhhhhhhHHHH
Q psy17186 31 YHNAKMEVEKLIQEKTEMQRH 51 (100)
Q Consensus 31 yhslklEceKlasEK~emqRh 51 (100)
+++=+..-||+++||.+++..
T Consensus 56 F~aERadREkl~~eKe~L~~q 76 (94)
T 3jsv_C 56 FQAERHAREKLVEKKEYLQEQ 76 (94)
T ss_dssp HHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 455566689999999988763
No 53
>1s2x_A CAG-Z; CAG pathogenicity island, type IV secretion system, unknown function; 1.90A {Helicobacter pylori} SCOP: a.47.3.1
Probab=23.21 E-value=61 Score=24.37 Aligned_cols=42 Identities=33% Similarity=0.513 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHhhhccHHhHH
Q psy17186 55 TEIAKRLNAIIVQI-MPFLSQEHQQQVATALERAKQVTMTELN 96 (100)
Q Consensus 55 ~Ei~KRLn~i~~Qv-lPfLsqEhQqqv~~AveraKqvt~~ELn 96 (100)
-...|.||.|..-+ -.|.--..-..-+..+||||-+|--.||
T Consensus 162 ddfgkklneivqdigtkyiilsknktyltsleraklitqlkln 204 (206)
T 1s2x_A 162 DDFGKKLNEIVQDIGTKYIILSKNKTYLTSLERAKLITQLKLN 204 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC------------------
T ss_pred hhHhHHHHHHHHHhCceEEEEecCchHHhHHHHHHHHHHHhhc
Confidence 56678888876543 1111111112345678999988866555
No 54
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=22.45 E-value=48 Score=18.80 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=16.4
Q ss_pred hhhhHHHHHHhhhhhhhHHHH
Q psy17186 31 YHNAKMEVEKLIQEKTEMQRH 51 (100)
Q Consensus 31 yhslklEceKlasEK~emqRh 51 (100)
.||+..+=.||.+||...++.
T Consensus 2 ~~slq~dE~kLl~ekE~l~~r 22 (34)
T 1a93_A 2 CGGVQAEEQKLISEEDLLRKR 22 (34)
T ss_dssp CCSHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHH
Confidence 367888888888888887764
No 55
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=22.10 E-value=1.2e+02 Score=20.23 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=27.5
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhhhhhhHHHHH
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHY 52 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlasEK~emqRhY 52 (100)
.+-+-+|-..|+++...|+.|...+..|...|..-|
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777788888888888888888887777665
No 56
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.03 E-value=1.2e+02 Score=18.25 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=3.6
Q ss_pred HHHHHHHhhh
Q psy17186 23 EFNFLQAQYH 32 (100)
Q Consensus 23 Ef~~lqaqyh 32 (100)
+...|.++++
T Consensus 17 ~l~~L~~rN~ 26 (51)
T 3m91_A 17 RIDSLAARNS 26 (51)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 57
>3bbn_R Ribosomal protein S18; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=20.32 E-value=16 Score=25.20 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHhhhcc
Q psy17186 71 FLSQEHQQQVATALERAKQVT 91 (100)
Q Consensus 71 fLsqEhQqqv~~AveraKqvt 91 (100)
-++..||.++..||.||..+-
T Consensus 53 GlcaK~QR~l~~AIKrAR~la 73 (103)
T 3bbn_R 53 RLTLKQQRLITSAIKQARILS 73 (103)
T ss_dssp TCCTTTTTTTHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 466789999999999999763
No 58
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=20.16 E-value=1.7e+02 Score=18.28 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=23.5
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHHHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEVEK 40 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEceK 40 (100)
|+.|+.=-+|||.++|++-...++--+|.
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888999999999988888776654
No 59
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.14 E-value=1.7e+02 Score=19.53 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=17.8
Q ss_pred hhHHhHHhHHHHHHHHHHhhhhhHHHH
Q psy17186 12 TVSESCDRIKEEFNFLQAQYHNAKMEV 38 (100)
Q Consensus 12 t~~es~DRIKeEf~~lqaqyhslklEc 38 (100)
.+.+.++++.+|...++.+..+++.++
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777766666666666553
No 60
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.01 E-value=1.4e+02 Score=17.13 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=15.4
Q ss_pred HHhHHHHHHHHHHhhhhhHHHHHHhhh
Q psy17186 17 CDRIKEEFNFLQAQYHNAKMEVEKLIQ 43 (100)
Q Consensus 17 ~DRIKeEf~~lqaqyhslklEceKlas 43 (100)
++-++.+|+.+.+.|.++..+|++...
T Consensus 21 ~~~~~~~~~~~k~~~~~~~~~l~~~~~ 47 (60)
T 3htk_A 21 CSLKTDEFLKAKEKINEIFEKLNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666655543
Done!