RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17186
(100 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.008
Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 17/94 (18%)
Query: 7 QPFK--FTVSESCDRIKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAKRLNAI 64
F F + D K +K E++ +I K + +
Sbjct: 27 DAFVDNFDCKDVQDMPKSIL---------SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 65 IVQIMPFLSQEHQQQ---VATAL-ERAKQVTMTE 94
+VQ F+ + + + + + +Q +M
Sbjct: 78 MVQK--FVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Score = 27.5 bits (60), Expect = 0.92
Identities = 6/65 (9%), Positives = 18/65 (27%), Gaps = 12/65 (18%)
Query: 2 PPQ--PGQPFKFTV-----SESCDRIKEEFNFLQAQYHNAKMEVEKLI--QEKTEMQRHY 52
P + P + ++ + N+ +E + E E ++ +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 53 VMTEI 57
+
Sbjct: 376 DRLSV 380
>3erm_A Uncharacterized conserved protein; APC85034, ppspto1197,
seudomonas syringae PV. tomato STR. DC structural
genomics, PSI-2; HET: MSE; 2.45A {Pseudomonas syringae
PV}
Length = 91
Score = 27.6 bits (61), Expect = 0.32
Identities = 11/59 (18%), Positives = 29/59 (49%)
Query: 37 EVEKLIQEKTEMQRHYVMTEIAKRLNAIIVQIMPFLSQEHQQQVATALERAKQVTMTEL 95
++E ++ H M E+A+ L ++++ +P LS++H + + + + + V
Sbjct: 15 DLETTFVDRKLADAHDQMLELAELLTDVLIKNVPGLSEKHAEDASIYMAKNRAVFAAAF 73
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 26.8 bits (59), Expect = 1.0
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 1 GPPQPGQPFKFTVSESCD 18
PFK V + D
Sbjct: 3 SGSSGRSPFKVKVLPTYD 20
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 26.0 bits (58), Expect = 2.6
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 20 IKEEFNFLQAQYHNAKMEVEKLIQEKTEMQRHYVMTEIAKR 60
+ EE L+A++ + + KL + + + E+A+R
Sbjct: 442 LTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAER 482
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 131
Score = 25.2 bits (55), Expect = 2.9
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 1 GPPQPGQPFKFTVSESCD 18
G P PG P+ S D
Sbjct: 13 GHPVPGSPYTVEASLPPD 30
>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 128
Score = 25.2 bits (55), Expect = 3.6
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 5 PGQPFKFTVSESCDRIK 21
P PFK V+E C
Sbjct: 107 PNSPFKVAVTEGCQPSS 123
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 24.9 bits (55), Expect = 5.1
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 53 VMTEIAKRLNAIIV--------QIMPFLSQEHQQQVATALERAKQ 89
V+ + +L I V ++ +S+E + V + ++
Sbjct: 315 VLEALKAKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAALRE 359
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 24.8 bits (54), Expect = 6.1
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 22 EEFNFLQAQYHNAKMEVEKLI 42
+N+L QY + E+
Sbjct: 803 AGWNYLLEQYELSMSSAEQNK 823
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.20A {Listeria innocua}
Length = 187
Score = 24.4 bits (53), Expect = 6.8
Identities = 4/21 (19%), Positives = 7/21 (33%), Gaps = 1/21 (4%)
Query: 76 HQQQVATALERAKQ-VTMTEL 95
H + A + +TE
Sbjct: 161 HLDMLKKAFSAITEEFLLTEG 181
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase;
nucleotidyltransferase, CMP-KDO synthetase, nucleoside
monophosphate glycosides; 1.83A {Escherichia coli} SCOP:
c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A*
1h7h_A* 1h7t_A*
Length = 245
Score = 24.4 bits (54), Expect = 7.8
Identities = 8/63 (12%), Positives = 20/63 (31%), Gaps = 16/63 (25%)
Query: 53 VMT------------EIAKRLNA-IIVQI---MPFLSQEHQQQVATALERAKQVTMTELN 96
+MT E+ ++ A I + + P + + + + + + L
Sbjct: 67 IMTRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLC 126
Query: 97 AII 99
I
Sbjct: 127 HAI 129
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595,
YHBY, UPF0044, unknown function; NMR {Staphylococcus
aureus} SCOP: d.68.4.1
Length = 104
Score = 23.8 bits (52), Expect = 8.3
Identities = 2/27 (7%), Positives = 12/27 (44%)
Query: 42 IQEKTEMQRHYVMTEIAKRLNAIIVQI 68
+ + + + +++ + +VQ+
Sbjct: 50 VLQNNFDDKKELAETLSEATRSELVQV 76
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 24.4 bits (53), Expect = 9.4
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 21 KEEFNFLQAQYHNAKMEVEKLI 42
E ++FL ++Y + EK
Sbjct: 251 TEGWDFLYSKYQFSLSSTEKSQ 272
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.130 0.359
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,438,459
Number of extensions: 72890
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 31
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)