RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17186
         (100 letters)



>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 115

 Score = 27.2 bits (60), Expect = 0.18
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 1   GPPQPGQPFKFTVSESCD 18
             P P  PFK  V+E C 
Sbjct: 96  DVPIPNSPFKVAVTEGCQ 113


>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 98

 Score = 25.7 bits (56), Expect = 0.67
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 5  PGQPFKFTVSESCD 18
          PG PF+  V +  D
Sbjct: 83 PGSPFRVPVKDVVD 96


>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 101

 Score = 24.5 bits (53), Expect = 1.7
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 5  PGQPFKFTVSESCD 18
          P  PFK  V  + D
Sbjct: 86 PRSPFKVKVLPTYD 99


>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 100

 Score = 24.6 bits (53), Expect = 1.9
 Identities = 4/14 (28%), Positives = 6/14 (42%)

Query: 5  PGQPFKFTVSESCD 18
          P  P +  V  + D
Sbjct: 85 PHFPARVKVEPAVD 98


>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 118

 Score = 24.6 bits (53), Expect = 2.1
 Identities = 7/18 (38%), Positives = 8/18 (44%)

Query: 1  GPPQPGQPFKFTVSESCD 18
          G P PG P+    S   D
Sbjct: 6  GHPVPGSPYTVEASLPPD 23


>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 102

 Score = 24.1 bits (52), Expect = 2.6
 Identities = 5/18 (27%), Positives = 7/18 (38%)

Query: 1   GPPQPGQPFKFTVSESCD 18
           G   P  PF+     + D
Sbjct: 83  GDEIPYSPFRIHALPTGD 100


>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 103

 Score = 22.9 bits (49), Expect = 7.1
 Identities = 3/12 (25%), Positives = 4/12 (33%)

Query: 5  PGQPFKFTVSES 16
             P    V +S
Sbjct: 88 ANSPVSIMVVQS 99


>d1ulea_ b.29.1.3 (A:) Galectin-2 {Inky cap fungus (Coprinopsis
           cinerea) [TaxId: 5346]}
          Length = 150

 Score = 22.9 bits (49), Expect = 7.3
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 2   PPQPGQPFKFTVSESCDRIKEEFN 25
                     TV +  DR +  F+
Sbjct: 82  EKFRPPNPSITVIDHGDRFQIRFD 105


>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli
          [TaxId: 562]}
          Length = 55

 Score = 21.8 bits (47), Expect = 9.5
 Identities = 6/18 (33%), Positives = 13/18 (72%)

Query: 72 LSQEHQQQVATALERAKQ 89
             ++Q+Q+A A++RA+ 
Sbjct: 28 TRAKYQRQLARAIKRARY 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 343,161
Number of extensions: 13787
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 22
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (21.9 bits)