Query psy17187
Match_columns 123
No_of_seqs 144 out of 1081
Neff 7.4
Searched_HMMs 29240
Date Sat Aug 17 00:05:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f5q_B Gamma herpesvirus cycli 100.0 2E-36 6.7E-41 228.7 8.6 114 5-118 43-156 (252)
2 2f2c_A Cyclin homolog, V-cycli 100.0 3.5E-34 1.2E-38 215.7 10.1 114 4-117 45-158 (254)
3 1g3n_C V-cyclin; cyclin-depend 100.0 6.4E-34 2.2E-38 214.6 10.7 114 4-117 44-157 (257)
4 2b9r_A Human cyclin B1; cell c 100.0 1E-32 3.4E-37 209.5 11.9 117 1-117 28-144 (269)
5 3g33_B CCND3 protein; Ser/Thr 100.0 6.1E-33 2.1E-37 214.5 10.4 114 5-118 65-178 (306)
6 2w96_A G1/S-specific cyclin-D1 100.0 4.5E-32 1.6E-36 205.8 11.8 114 5-118 51-164 (271)
7 2cch_B Cyclin A2, cyclin-A; co 100.0 2.5E-32 8.5E-37 206.2 10.0 115 4-118 32-146 (260)
8 1w98_B Cyclin E, G1/S-specific 100.0 6.9E-32 2.4E-36 206.3 10.9 113 5-117 44-157 (283)
9 2ivx_A Cyclin-T2; transcriptio 99.9 2.8E-26 9.6E-31 172.4 8.8 110 8-118 28-153 (257)
10 2i53_A Cyclin K; cell cycle, t 99.9 6.4E-26 2.2E-30 170.2 8.8 113 6-119 36-159 (258)
11 1zp2_A RNA polymerase II holoe 99.9 1.4E-24 4.7E-29 161.5 10.6 106 11-117 28-140 (235)
12 3rgf_B Cyclin-C; protein kinas 99.9 1.6E-24 5.6E-29 165.6 11.1 111 9-119 41-165 (285)
13 2pk2_A Cyclin-T1, protein TAT; 99.9 1.7E-25 5.9E-30 176.1 5.3 110 8-118 35-160 (358)
14 1jkw_A Cyclin H; cell cycle, c 99.9 1.3E-22 4.3E-27 157.7 9.5 106 10-116 56-168 (323)
15 1c9b_A General transcription f 99.7 2.5E-17 8.6E-22 119.9 10.3 106 9-117 3-108 (207)
16 1ais_B TFB TFIIB, protein (tra 99.5 2.6E-13 9E-18 98.0 9.9 106 9-117 7-114 (200)
17 3k7a_M Transcription initiatio 99.0 5.3E-10 1.8E-14 87.3 6.6 102 12-116 127-240 (345)
18 2pmi_B PHO85 cyclin PHO80, ami 98.6 1.6E-07 5.4E-12 72.0 8.8 96 13-110 76-174 (293)
19 4bbr_M Transcription initiatio 98.1 1.2E-05 4E-10 62.8 8.5 91 12-105 127-217 (345)
20 1ais_B TFB TFIIB, protein (tra 97.4 0.0008 2.7E-08 47.8 8.4 88 16-106 110-197 (200)
21 1c9b_A General transcription f 96.2 0.025 8.7E-07 40.2 8.1 86 16-104 104-189 (207)
22 2i53_A Cyclin K; cell cycle, t 93.2 0.33 1.1E-05 35.3 7.3 89 16-104 153-251 (258)
23 2ivx_A Cyclin-T2; transcriptio 93.1 0.35 1.2E-05 35.2 7.2 88 16-103 148-239 (257)
24 2f2c_A Cyclin homolog, V-cycli 92.7 0.59 2E-05 34.1 7.9 85 16-102 154-246 (254)
25 1zp2_A RNA polymerase II holoe 92.6 0.16 5.3E-06 36.8 4.6 84 16-103 136-219 (235)
26 3rgf_B Cyclin-C; protein kinas 91.5 0.23 7.8E-06 37.1 4.5 83 16-103 159-241 (285)
27 2cch_B Cyclin A2, cyclin-A; co 91.3 0.62 2.1E-05 34.1 6.6 85 15-102 140-226 (260)
28 2pk2_A Cyclin-T1, protein TAT; 91.1 0.39 1.3E-05 37.2 5.6 89 16-104 155-247 (358)
29 1g3n_C V-cyclin; cyclin-depend 90.6 1.1 3.8E-05 32.6 7.5 86 15-102 152-246 (257)
30 2b9r_A Human cyclin B1; cell c 88.8 0.63 2.1E-05 34.3 4.9 82 16-100 140-221 (269)
31 3k7a_M Transcription initiatio 87.1 0.12 4E-06 39.9 0.0 66 15-81 236-301 (345)
32 3g33_B CCND3 protein; Ser/Thr 85.4 3.1 0.00011 31.2 7.2 86 17-104 174-267 (306)
33 4bbr_M Transcription initiatio 84.5 0.19 6.4E-06 38.9 0.0 67 14-81 235-301 (345)
34 2w96_A G1/S-specific cyclin-D1 84.4 3.4 0.00012 30.2 6.9 88 16-105 159-258 (271)
35 3h4c_A Transcription factor TF 80.3 9.7 0.00033 27.8 7.6 89 12-104 13-104 (260)
36 1jkw_A Cyclin H; cell cycle, c 77.3 5 0.00017 30.3 5.8 75 30-104 186-261 (323)
37 2p1m_A SKP1-like protein 1A; F 68.5 3.9 0.00013 27.8 3.0 39 54-93 112-150 (160)
38 3v7d_A Suppressor of kinetocho 65.5 8.3 0.00028 26.5 4.2 77 5-93 56-158 (169)
39 2ast_A S-phase kinase-associat 63.6 8.6 0.0003 25.9 4.0 77 5-93 48-151 (159)
40 2qdj_A Retinoblastoma-associat 63.4 15 0.00052 27.8 5.6 71 18-91 6-80 (304)
41 3m03_A ORC6, origin recognitio 62.3 26 0.0009 22.0 7.2 80 18-102 6-91 (95)
42 1fs1_B SKP1, cyclin A/CDK2-ass 60.0 8.4 0.00029 25.5 3.3 55 5-70 43-124 (141)
43 1w98_B Cyclin E, G1/S-specific 56.1 39 0.0013 24.7 6.7 57 35-101 183-239 (283)
44 2wh0_Q Pkcev3, protein kinase 43.3 20 0.00068 17.4 2.2 18 88-105 12-29 (31)
45 3i6x_A P195, RAS GTPase-activa 36.5 22 0.00074 25.1 2.5 79 8-98 112-191 (193)
46 2jn6_A Protein CGL2762, transp 32.7 59 0.002 19.3 3.8 36 1-36 1-44 (97)
47 1dlw_A Hemoglobin; oxygen stor 29.1 1E+02 0.0035 18.9 5.3 39 3-41 70-108 (116)
48 1hll_A Alpha-2A adrenergic rec 29.1 23 0.00079 16.5 1.2 17 30-46 3-19 (32)
49 2zc2_A DNAD-like replication p 27.9 70 0.0024 18.5 3.4 31 5-39 17-47 (78)
50 1fsh_A Dishevelled-1; three-he 27.4 47 0.0016 20.8 2.7 30 12-41 54-83 (105)
51 1uhw_A Pleckstrin; three-helix 26.2 67 0.0023 20.5 3.3 29 12-41 41-69 (109)
52 2bkm_A Truncated hemoglobin fr 24.7 1.3E+02 0.0046 18.8 5.4 39 3-41 77-115 (128)
53 2cso_A Pleckstrin; DEP domain, 23.1 73 0.0025 20.9 3.1 29 12-41 51-79 (127)
54 2bmm_A Thermostable hemoglobin 22.9 1.4E+02 0.0049 18.4 5.3 39 3-41 75-113 (123)
55 1v3f_A Pleckstrin 2; three-hel 20.6 83 0.0028 20.2 2.9 29 12-41 41-69 (120)
No 1
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2e-36 Score=228.74 Aligned_cols=114 Identities=21% Similarity=0.255 Sum_probs=110.2
Q ss_pred CCCHHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcC
Q psy17187 5 AISIQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDY 84 (123)
Q Consensus 5 ~Is~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~ 84 (123)
.|++.+|.++++||.+|+..|+++++|+|+||+|+|||++..+++++++||+|+|||+||+|+||..||+++++++++++
T Consensus 43 ~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~ 122 (252)
T 1f5q_B 43 HFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGG 122 (252)
T ss_dssp HHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhHhcCCceehhhhhHHhccc
Q psy17187 85 TFSPHTLKTTEKPAVYLNNTHVIMKKVKDLVGTS 118 (123)
Q Consensus 85 ~~t~~ei~~mE~~IL~~ln~~i~~~~~~d~~~~~ 118 (123)
.|+++||++||+.||++|||++..||+++|++--
T Consensus 123 ~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~ 156 (252)
T 1f5q_B 123 ATTADKLLTLEVKSLDTLSWVADRCLSTDLICYI 156 (252)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHH
Confidence 9999999999999999999999999999998643
No 2
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=3.5e-34 Score=215.68 Aligned_cols=114 Identities=30% Similarity=0.420 Sum_probs=107.9
Q ss_pred cCCCHHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhc
Q psy17187 4 FAISIQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSD 83 (123)
Q Consensus 4 ~~Is~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~ 83 (123)
..|++.+|.++++||.+|+..|+++++|+|+|++|+|||++..+++++++||+|+|||+||+|+||..||++++++++++
T Consensus 45 ~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~ 124 (254)
T 2f2c_A 45 TEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSC 124 (254)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC-
T ss_pred ccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhHhcCCceehhhhhHHhcc
Q psy17187 84 YTFSPHTLKTTEKPAVYLNNTHVIMKKVKDLVGT 117 (123)
Q Consensus 84 ~~~t~~ei~~mE~~IL~~ln~~i~~~~~~d~~~~ 117 (123)
+.|+++||.+||+.||++|||++..+|+.+|++-
T Consensus 125 ~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~ 158 (254)
T 2f2c_A 125 DCFTNLELINQEKDILEALKWDTEAVLATDFLIP 158 (254)
T ss_dssp --CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999864
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.4e-34 Score=214.56 Aligned_cols=114 Identities=25% Similarity=0.348 Sum_probs=110.9
Q ss_pred cCCCHHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhc
Q psy17187 4 FAISIQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSD 83 (123)
Q Consensus 4 ~~Is~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~ 83 (123)
..|++.+|.++++||.+|+..|+++++|+|+|++|+|||++..+++++++||+|+|||+||+|+||..||++++++++++
T Consensus 44 ~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~ 123 (257)
T 1g3n_C 44 QSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAA 123 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhHhcCCceehhhhhHHhcc
Q psy17187 84 YTFSPHTLKTTEKPAVYLNNTHVIMKKVKDLVGT 117 (123)
Q Consensus 84 ~~~t~~ei~~mE~~IL~~ln~~i~~~~~~d~~~~ 117 (123)
+.|+++||.+||+.||+.|||++..+|+.+|+.-
T Consensus 124 ~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~ 157 (257)
T 1g3n_C 124 DSFSRQELIDQEKELLEKLAWRTEAVLATDVTSF 157 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999864
No 4
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=1e-32 Score=209.48 Aligned_cols=117 Identities=21% Similarity=0.224 Sum_probs=113.0
Q ss_pred CCccCCCHHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHH
Q psy17187 1 MSAFAISIQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVY 80 (123)
Q Consensus 1 ~~~~~Is~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~ 80 (123)
|..+.|++.+|..+++||.+++..++++++|+++|++++|||++..+++++++|++|+|||+||+|+||..||++++++.
T Consensus 28 ~~~q~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~ 107 (269)
T 2b9r_A 28 LLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAF 107 (269)
T ss_dssp TSSSSSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhHhcCCceehhhhhHHhcc
Q psy17187 81 YSDYTFSPHTLKTTEKPAVYLNNTHVIMKKVKDLVGT 117 (123)
Q Consensus 81 ~~~~~~t~~ei~~mE~~IL~~ln~~i~~~~~~d~~~~ 117 (123)
++++.|+++||.+||+.||+.|||++..+|+.+|+.-
T Consensus 108 ~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~ 144 (269)
T 2b9r_A 108 VTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRR 144 (269)
T ss_dssp HTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 9999999999999999999999999999999999864
No 5
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=6.1e-33 Score=214.46 Aligned_cols=114 Identities=33% Similarity=0.540 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcC
Q psy17187 5 AISIQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDY 84 (123)
Q Consensus 5 ~Is~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~ 84 (123)
.|++.+|.++++||.+|+..|+++++|+++|++|+|||++..++.+.++||+|++||+||+|+||..||++++++.++++
T Consensus 65 ~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~ 144 (306)
T 3g33_B 65 EIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDH 144 (306)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhHhcCCceehhhhhHHhccc
Q psy17187 85 TFSPHTLKTTEKPAVYLNNTHVIMKKVKDLVGTS 118 (123)
Q Consensus 85 ~~t~~ei~~mE~~IL~~ln~~i~~~~~~d~~~~~ 118 (123)
.|+++||++||+.||+.|||++..+|+++|+.--
T Consensus 145 ~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~ 178 (306)
T 3g33_B 145 AVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFI 178 (306)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHH
Confidence 9999999999999999999999999999998643
No 6
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.97 E-value=4.5e-32 Score=205.80 Aligned_cols=114 Identities=31% Similarity=0.521 Sum_probs=110.8
Q ss_pred CCCHHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcC
Q psy17187 5 AISIQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDY 84 (123)
Q Consensus 5 ~Is~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~ 84 (123)
.|++.+|.++++||.+++..++++++|+++|++|+|||++..++++.++|++|+|||+||+|+||..||++++++.++++
T Consensus 51 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~ 130 (271)
T 2w96_A 51 EVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDN 130 (271)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhHhcCCceehhhhhHHhccc
Q psy17187 85 TFSPHTLKTTEKPAVYLNNTHVIMKKVKDLVGTS 118 (123)
Q Consensus 85 ~~t~~ei~~mE~~IL~~ln~~i~~~~~~d~~~~~ 118 (123)
.|+++||.+||+.||+.|||++..+|+.+|+.--
T Consensus 131 ~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~ 164 (271)
T 2w96_A 131 SIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHF 164 (271)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHH
Confidence 9999999999999999999999999999998643
No 7
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.97 E-value=2.5e-32 Score=206.17 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=111.4
Q ss_pred cCCCHHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhc
Q psy17187 4 FAISIQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSD 83 (123)
Q Consensus 4 ~~Is~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~ 83 (123)
..|++.+|..+++||.+++..++++++|+++|++++|||++..++++.++|++|+|||+||+|+||..||++++++.+++
T Consensus 32 ~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~ 111 (260)
T 2cch_B 32 PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITD 111 (260)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhHhcCCceehhhhhHHhccc
Q psy17187 84 YTFSPHTLKTTEKPAVYLNNTHVIMKKVKDLVGTS 118 (123)
Q Consensus 84 ~~~t~~ei~~mE~~IL~~ln~~i~~~~~~d~~~~~ 118 (123)
+.|+++||.+||+.||+.|||++..+|+.+|+.--
T Consensus 112 ~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~ 146 (260)
T 2cch_B 112 DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQY 146 (260)
T ss_dssp SSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHH
Confidence 99999999999999999999999999999998643
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=6.9e-32 Score=206.34 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHcccc-CCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhc
Q psy17187 5 AISIQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCY-CPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSD 83 (123)
Q Consensus 5 ~Is~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~-~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~ 83 (123)
.|++.+|.++++||.+++..++++++|+++|++++|||++. ..+++.++||+|++||+||+|+||..||++++++.+++
T Consensus 44 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~ 123 (283)
T 1w98_B 44 LLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTD 123 (283)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHc
Confidence 68999999999999999999999999999999999999998 68999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhHhcCCceehhhhhHHhcc
Q psy17187 84 YTFSPHTLKTTEKPAVYLNNTHVIMKKVKDLVGT 117 (123)
Q Consensus 84 ~~~t~~ei~~mE~~IL~~ln~~i~~~~~~d~~~~ 117 (123)
+.|+++||.+||+.||+.|||++..+|+.+|++-
T Consensus 124 ~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~ 157 (283)
T 1w98_B 124 GACSGDEILTMELMIMKALKWRLSPLTIVSWLNV 157 (283)
T ss_dssp TSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999864
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.93 E-value=2.8e-26 Score=172.38 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhh-----
Q psy17187 8 IQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYS----- 82 (123)
Q Consensus 8 ~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~----- 82 (123)
..+|..+++||.+++..++++++|+++|++|+|||++.+++.+.++|++|+|||+||+|+||. |+++++++..+
T Consensus 28 ~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~~~ 106 (257)
T 2ivx_A 28 LSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHACLH 106 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHHhc
Confidence 369999999999999999999999999999999999999999999999999999999999998 89999998654
Q ss_pred ---------cCCCC--HHHHHHHHHHHhHhcCCceehhhhhHHhccc
Q psy17187 83 ---------DYTFS--PHTLKTTEKPAVYLNNTHVIMKKVKDLVGTS 118 (123)
Q Consensus 83 ---------~~~~t--~~ei~~mE~~IL~~ln~~i~~~~~~d~~~~~ 118 (123)
++.|+ +++|.+||..||+.|+|++..+++.+|+.--
T Consensus 107 ~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~ 153 (257)
T 2ivx_A 107 PLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKC 153 (257)
T ss_dssp TTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHH
Confidence 34565 8999999999999999999999999998643
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.93 E-value=6.4e-26 Score=170.24 Aligned_cols=113 Identities=12% Similarity=0.171 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhh---
Q psy17187 6 ISIQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYS--- 82 (123)
Q Consensus 6 Is~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~--- 82 (123)
+...+|..+++||.+++..++++++|+++|++|+|||++.+++.+.++|++|+|||+||+|+|| .|+++++++..+
T Consensus 36 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~~~~~~ 114 (258)
T 2i53_A 36 TEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEE-TPKKCKDIIKTARSL 114 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999999999999 588999998654
Q ss_pred --cCCC------CHHHHHHHHHHHhHhcCCceehhhhhHHhcccc
Q psy17187 83 --DYTF------SPHTLKTTEKPAVYLNNTHVIMKKVKDLVGTSM 119 (123)
Q Consensus 83 --~~~~------t~~ei~~mE~~IL~~ln~~i~~~~~~d~~~~~~ 119 (123)
++.| ++++|.+||+.||+.|||++..+++.+|+..-+
T Consensus 115 ~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~ 159 (258)
T 2i53_A 115 LNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYA 159 (258)
T ss_dssp SCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHH
T ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHH
Confidence 3344 489999999999999999999999999986533
No 11
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.4e-24 Score=161.50 Aligned_cols=106 Identities=11% Similarity=0.249 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccC-cCceehhhhhHHHHhhhhhccCCCHHhHHHhhcC-----
Q psy17187 11 NVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEK-SQLQLTASACLLIASKIRECHALCVEDLVYYSDY----- 84 (123)
Q Consensus 11 R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~-~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~----- 84 (123)
|...++||.+++..++++++|+++|++|+|||++.+++.+ .++|++|+|||+||+|+|| .|+++++++..+++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999 9999999999999999999 58899999998875
Q ss_pred -CCCHHHHHHHHHHHhHhcCCceehhhhhHHhcc
Q psy17187 85 -TFSPHTLKTTEKPAVYLNNTHVIMKKVKDLVGT 117 (123)
Q Consensus 85 -~~t~~ei~~mE~~IL~~ln~~i~~~~~~d~~~~ 117 (123)
.+++++|.+||+.||+.|+|++..+++.+|+.-
T Consensus 107 ~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~ 140 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQ 140 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHCCCcEEecChHHHHHH
Confidence 689999999999999999999999999999754
No 12
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.6e-24 Score=165.58 Aligned_cols=111 Identities=17% Similarity=0.227 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhc-----
Q psy17187 9 QTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSD----- 83 (123)
Q Consensus 9 ~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~----- 83 (123)
++|..+++||.+++..++++++|+++|++|+|||++.+.+.+.++|++|++||+||+|+||..+|++++++..++
T Consensus 41 ~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~ 120 (285)
T 3rgf_B 41 KLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKT 120 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcc
Confidence 578999999999999999999999999999999999999999999999999999999999998889999887652
Q ss_pred ---------CCCCHHHHHHHHHHHhHhcCCceehhhhhHHhcccc
Q psy17187 84 ---------YTFSPHTLKTTEKPAVYLNNTHVIMKKVKDLVGTSM 119 (123)
Q Consensus 84 ---------~~~t~~ei~~mE~~IL~~ln~~i~~~~~~d~~~~~~ 119 (123)
..|++++|++||..||+.|||++..+++.+|+..-+
T Consensus 121 ~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~ 165 (285)
T 3rgf_B 121 RFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYV 165 (285)
T ss_dssp HCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHH
T ss_pred cccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHH
Confidence 248999999999999999999999999999986433
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.91 E-value=1.7e-25 Score=176.07 Aligned_cols=110 Identities=14% Similarity=0.102 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhh-----
Q psy17187 8 IQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYS----- 82 (123)
Q Consensus 8 ~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~----- 82 (123)
..+|..+++||.+++..++++++|+++|++|+|||++.+++.+.++|++|+|||+||+|+||. |+++++++..+
T Consensus 35 ~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~~~~ 113 (358)
T 2pk2_A 35 LSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHTCLH 113 (358)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999999999999999999999999999998 88999998654
Q ss_pred ---------cCCCC--HHHHHHHHHHHhHhcCCceehhhhhHHhccc
Q psy17187 83 ---------DYTFS--PHTLKTTEKPAVYLNNTHVIMKKVKDLVGTS 118 (123)
Q Consensus 83 ---------~~~~t--~~ei~~mE~~IL~~ln~~i~~~~~~d~~~~~ 118 (123)
++.|+ +++|++||+.||+.|+|++..+++.+|+.--
T Consensus 114 ~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~ 160 (358)
T 2pk2_A 114 PQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKC 160 (358)
T ss_dssp SSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHH
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHH
Confidence 33454 8999999999999999999999999998643
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.88 E-value=1.3e-22 Score=157.71 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhHhcC--CchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcC---
Q psy17187 10 TNVFLYSSLLQLCEERH--CEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDY--- 84 (123)
Q Consensus 10 ~R~~li~W~~~v~~~~~--l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~--- 84 (123)
.|....+||.++|..++ ++++|+++|++|+|||++.+++.+.++|++|+|||+||+|+||. |+++++++..+.+
T Consensus 56 lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p~ 134 (323)
T 1jkw_A 56 LCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESPL 134 (323)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccChh
Confidence 67888999999999999 99999999999999999999999999999999999999999997 6789999876643
Q ss_pred --CCCHHHHHHHHHHHhHhcCCceehhhhhHHhc
Q psy17187 85 --TFSPHTLKTTEKPAVYLNNTHVIMKKVKDLVG 116 (123)
Q Consensus 85 --~~t~~ei~~mE~~IL~~ln~~i~~~~~~d~~~ 116 (123)
.|++++|++||..||+.|+|++..+++.+++.
T Consensus 135 ~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~ 168 (323)
T 1jkw_A 135 GQEKALEQILEYELLLIQQLNFHLIVHNPYRPFE 168 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHH
Confidence 37789999999999999999999999998775
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.72 E-value=2.5e-17 Score=119.94 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCH
Q psy17187 9 QTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSP 88 (123)
Q Consensus 9 ~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~ 88 (123)
.......+|+.+++..++++++|...|+.+++||+..+.+...+.+++|++|+++|+|+||. |+++++++..++ +++
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~ 79 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISK 79 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCH
Confidence 45667889999999999999999999999999999999999999999999999999999986 889999998887 899
Q ss_pred HHHHHHHHHHhHhcCCceehhhhhHHhcc
Q psy17187 89 HTLKTTEKPAVYLNNTHVIMKKVKDLVGT 117 (123)
Q Consensus 89 ~ei~~mE~~IL~~ln~~i~~~~~~d~~~~ 117 (123)
+++.++|+.|++.|++++..+++.+++..
T Consensus 80 ~~i~~~~~~ll~~L~~~l~~~~p~~~l~r 108 (207)
T 1c9b_A 80 KEIGRCFKLILKALETSVDLITTGDFMSR 108 (207)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcCcCCHHHHHHH
Confidence 99999999999999999999999988764
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.47 E-value=2.6e-13 Score=98.02 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCH
Q psy17187 9 QTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSP 88 (123)
Q Consensus 9 ~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~ 88 (123)
.......+++.+++..+++++.+...|..+++|+.....+.....+.++++|+++|+|.+| .|.++++++..++ ++.
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~--v~~ 83 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR--VDK 83 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT--SCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC--CCH
Confidence 3446788999999999999999999999999999999999999999999999999999987 6899999998886 789
Q ss_pred HHHHHHHHHHhHhcCCceeh--hhhhHHhcc
Q psy17187 89 HTLKTTEKPAVYLNNTHVIM--KKVKDLVGT 117 (123)
Q Consensus 89 ~ei~~mE~~IL~~ln~~i~~--~~~~d~~~~ 117 (123)
.+|.++|+.+++.|++++.. +++.+++.-
T Consensus 84 ~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r 114 (200)
T 1ais_B 84 KEIGRSYRFIARNLNLTPKKLFVKPTDYVNK 114 (200)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCCCGGGGHHH
T ss_pred HHHHHHHHHHHHHhcccCCcCCCCHHHHHHH
Confidence 99999999999999999877 778777653
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.00 E-value=5.3e-10 Score=87.27 Aligned_cols=102 Identities=10% Similarity=0.054 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHH
Q psy17187 12 VFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSPHTL 91 (123)
Q Consensus 12 ~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei 91 (123)
......+.+++..++++..+.-.|..++.|+.....+.....+.++++|+++|+|.++. |.++.+++..++ ++.++|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~keI 203 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHHH
Confidence 45668889999999999999999999999999999999999999999999999998764 899999998886 889999
Q ss_pred HHHHHHHhHhcC------------CceehhhhhHHhc
Q psy17187 92 KTTEKPAVYLNN------------THVIMKKVKDLVG 116 (123)
Q Consensus 92 ~~mE~~IL~~ln------------~~i~~~~~~d~~~ 116 (123)
.++++.|++.|+ +.+...++.+|+.
T Consensus 204 gr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~ 240 (345)
T 3k7a_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIP 240 (345)
T ss_dssp HHHHHHHHHHHTCC-----------------------
T ss_pred HHHHHHHHHHHhhhhccccccccccccCCCCHHHHHH
Confidence 999999999998 7766666667654
No 18
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.62 E-value=1.6e-07 Score=71.96 Aligned_cols=96 Identities=11% Similarity=0.019 Sum_probs=83.1
Q ss_pred HHHHHHHHHhHhcCCchhhHHHHHHHHHHccccC---CccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCHH
Q psy17187 13 FLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYC---PMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSPH 89 (123)
Q Consensus 13 ~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~---~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ 89 (123)
.+-+|+.++...-+++.+++-.|..|+||..... .+.....+-+-++|+.+|+|+-+....+-+....++ .++.+
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--Gisl~ 153 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--GVRCH 153 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--TSCHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc--CcCHH
Confidence 3567899999999999999999999999998853 356777888999999999999988888888887774 47999
Q ss_pred HHHHHHHHHhHhcCCceehhh
Q psy17187 90 TLKTTEKPAVYLNNTHVIMKK 110 (123)
Q Consensus 90 ei~~mE~~IL~~ln~~i~~~~ 110 (123)
|+-.||+..|..+||++..+.
T Consensus 154 ELN~LE~eFL~lLdf~L~V~~ 174 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRIIPRD 174 (293)
T ss_dssp HHHHHHHHHHHTTTTCCSCCT
T ss_pred HHHHHHHHHHHHcCCceeeCH
Confidence 999999999999999986553
No 19
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.11 E-value=1.2e-05 Score=62.78 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHH
Q psy17187 12 VFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSPHTL 91 (123)
Q Consensus 12 ~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei 91 (123)
......|.+++..++++..+.-.|..++.++.....+.......++++|+++|+|.++ .|.++.++...++ .++.+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~-~prtl~eI~~~~~--v~~kei 203 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC-CBCCHHHHHHHHT--CCTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC-CCccHHHHHHHhC--CCHHHH
Confidence 4456778899999999999999999999999999889888999999999999999864 6889999998886 578899
Q ss_pred HHHHHHHhHhcCCc
Q psy17187 92 KTTEKPAVYLNNTH 105 (123)
Q Consensus 92 ~~mE~~IL~~ln~~ 105 (123)
-+..+.|.+.|+..
T Consensus 204 gr~~k~l~~~L~l~ 217 (345)
T 4bbr_M 204 GKTLNIMKNILRGK 217 (345)
T ss_dssp HHHHHHHHHCC---
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999999864
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.42 E-value=0.0008 Score=47.84 Aligned_cols=88 Identities=16% Similarity=0.063 Sum_probs=76.5
Q ss_pred HHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHHHHHH
Q psy17187 16 SSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSPHTLKTTE 95 (123)
Q Consensus 16 ~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei~~mE 95 (123)
+++...+..++++.++.-.|..++++.....-........++++|+++|++... .+.+.+++...++ .++.+|.+.=
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~-~~~t~~ei~~~~~--vs~~ti~~~~ 186 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEG-EKRTQREVAEVAR--VTEVTVRNRY 186 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHT--CCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhC--CCHHHHHHHH
Confidence 567788889999999999999999999987777788889999999999999864 5678899988886 5899999999
Q ss_pred HHHhHhcCCce
Q psy17187 96 KPAVYLNNTHV 106 (123)
Q Consensus 96 ~~IL~~ln~~i 106 (123)
+.+.+.++.++
T Consensus 187 ~~l~~~l~~~~ 197 (200)
T 1ais_B 187 KELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHcCCCC
Confidence 99999988654
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=96.22 E-value=0.025 Score=40.17 Aligned_cols=86 Identities=12% Similarity=0.039 Sum_probs=70.2
Q ss_pred HHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHHHHHH
Q psy17187 16 SSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSPHTLKTTE 95 (123)
Q Consensus 16 ~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei~~mE 95 (123)
+.+.+.+..++++.++.-+|..+++.-....-.....-.-++++|+++|++..+ .+.+.+++...++ ++..+|.+.=
T Consensus 104 ~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~-~~~~~~~i~~~~~--v~~~tI~~~~ 180 (207)
T 1c9b_A 104 DFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASA-EKRTQKEIGDIAG--VADVTIRQSY 180 (207)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSS-SCCCHHHHHHHHT--CCHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHhC--CCHHHHHHHH
Confidence 566778889999999999999999988776556678888999999999999874 4567788877664 5788999988
Q ss_pred HHHhHhcCC
Q psy17187 96 KPAVYLNNT 104 (123)
Q Consensus 96 ~~IL~~ln~ 104 (123)
+.+.+.++-
T Consensus 181 ~~l~~~l~~ 189 (207)
T 1c9b_A 181 RLIYPRAPD 189 (207)
T ss_dssp HHHGGGHHH
T ss_pred HHHHHHHHH
Confidence 888887653
No 22
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=93.25 E-value=0.33 Score=35.34 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=61.0
Q ss_pred HHHHHHhHhcCCch----hhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCH------HhHHHhhcCC
Q psy17187 16 SSLLQLCEERHCEY----QVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCV------EDLVYYSDYT 85 (123)
Q Consensus 16 ~W~~~v~~~~~l~~----~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~------~~l~~~~~~~ 85 (123)
+++...+..++.+. +....|..+++.-+.....-...-..+|++|+++|++..+...+.. ..-...-...
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~ 232 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQD 232 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSS
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccC
Confidence 45666667777765 5777888888877765555567778999999999999875432211 1100111236
Q ss_pred CCHHHHHHHHHHHhHhcCC
Q psy17187 86 FSPHTLKTTEKPAVYLNNT 104 (123)
Q Consensus 86 ~t~~ei~~mE~~IL~~ln~ 104 (123)
++.+++.+.-..|++..+-
T Consensus 233 ~~~~~l~~~~~~il~ly~~ 251 (258)
T 2i53_A 233 VPVDVLEDICHQILDLYSQ 251 (258)
T ss_dssp CCHHHHHHHHHHHHTTTSS
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 8999999999999987653
No 23
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=93.10 E-value=0.35 Score=35.23 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=58.5
Q ss_pred HHHHHHhHhcCCchhhHHHHHHHHHHccc-cCCccCcCceehhhhhHHHHhhhhhccCCCH---HhHHHhhcCCCCHHHH
Q psy17187 16 SSLLQLCEERHCEYQVFPYAVSIMDRFLC-YCPMEKSQLQLTASACLLIASKIRECHALCV---EDLVYYSDYTFSPHTL 91 (123)
Q Consensus 16 ~W~~~v~~~~~l~~~tl~lAv~~lDr~ls-~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~---~~l~~~~~~~~t~~ei 91 (123)
+++.......+.+.+...+|..++..-+. ..-.-...-..+|++|+++|++..+...|.. .......+..++.+++
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l 227 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELL 227 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHH
Confidence 35556666777778888888888755442 2223445667899999999999876432211 1111122345899999
Q ss_pred HHHHHHHhHhcC
Q psy17187 92 KTTEKPAVYLNN 103 (123)
Q Consensus 92 ~~mE~~IL~~ln 103 (123)
.+.-..|++.+.
T Consensus 228 ~~~~~~i~~~~~ 239 (257)
T 2ivx_A 228 DELTHEFLQILE 239 (257)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
No 24
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=92.67 E-value=0.59 Score=34.11 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=57.4
Q ss_pred HHHHHHhHhcCCchhhH----HHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCC----HHhHHHhhcCCCC
Q psy17187 16 SSLLQLCEERHCEYQVF----PYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALC----VEDLVYYSDYTFS 87 (123)
Q Consensus 16 ~W~~~v~~~~~l~~~tl----~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~----~~~l~~~~~~~~t 87 (123)
+|+.......+.+.++. ..|..+++.-+.....-......+|++|+++|.+.....+.+ .+.+...++ ++
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg--~~ 231 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILN--FS 231 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHT--CC
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHC--cC
Confidence 34555556666666653 346677775554444556677889999999999985333444 556666654 68
Q ss_pred HHHHHHHHHHHhHhc
Q psy17187 88 PHTLKTTEKPAVYLN 102 (123)
Q Consensus 88 ~~ei~~mE~~IL~~l 102 (123)
.+++...=..|.+.+
T Consensus 232 ~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 232 TNTVRTVKDQVSEAF 246 (254)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888777654
No 25
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=92.56 E-value=0.16 Score=36.78 Aligned_cols=84 Identities=15% Similarity=0.044 Sum_probs=60.0
Q ss_pred HHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHHHHHH
Q psy17187 16 SSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSPHTLKTTE 95 (123)
Q Consensus 16 ~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei~~mE 95 (123)
+++...+...+++.++.-.|..+++.-+.....-...-..+|++|+++|++..+...| .+-.... .++.+++.+.-
T Consensus 136 ~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~--~~~~~~~--~~~~~~i~~~~ 211 (235)
T 1zp2_A 136 TSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP--KLLDLIK--STDAFKVILCV 211 (235)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHH--HHHHHCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCC--CCcchhh--cCCHHHHHHHH
Confidence 3555666677888888899999998876655556667788999999999998643211 1112222 57888999888
Q ss_pred HHHhHhcC
Q psy17187 96 KPAVYLNN 103 (123)
Q Consensus 96 ~~IL~~ln 103 (123)
..|++...
T Consensus 212 ~~i~~ly~ 219 (235)
T 1zp2_A 212 QRIISIYY 219 (235)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88887654
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=91.46 E-value=0.23 Score=37.13 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=58.9
Q ss_pred HHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHHHHHH
Q psy17187 16 SSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSPHTLKTTE 95 (123)
Q Consensus 16 ~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei~~mE 95 (123)
+++...+..++.+.++..+|..+++.-+.....-...-..+|++|+++|++...... ..-. ..-.++.+++.+.-
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~--~~~~~~~~~l~~~~ 233 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA---RQWF--AELSVDMEKILEII 233 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC---HHHH--HTSCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh---hhHH--HHHCCCHHHHHHHH
Confidence 355566667777788888888888876654444456677899999999999865422 2222 22358899999998
Q ss_pred HHHhHhcC
Q psy17187 96 KPAVYLNN 103 (123)
Q Consensus 96 ~~IL~~ln 103 (123)
..|++...
T Consensus 234 ~~il~ly~ 241 (285)
T 3rgf_B 234 RVILKLYE 241 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888753
No 27
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=91.26 E-value=0.62 Score=34.10 Aligned_cols=85 Identities=15% Similarity=-0.005 Sum_probs=59.0
Q ss_pred HHHHHHHhHhcCCch-hhHHHHHHHHHHccccCC-ccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHHH
Q psy17187 15 YSSLLQLCEERHCEY-QVFPYAVSIMDRFLCYCP-MEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSPHTLK 92 (123)
Q Consensus 15 i~W~~~v~~~~~l~~-~tl~lAv~~lDr~ls~~~-i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei~ 92 (123)
.+|+...+...+.+. ++..+|-.+++.-+.... .-...-..+|++|+++|.+..+. ++..+.+...++ ++.+++.
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g--~~~~~i~ 216 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTG--YTLESLK 216 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhC--cCHHHHH
Confidence 356666777777665 667778777776543333 44556678999999999998764 333455655554 6899999
Q ss_pred HHHHHHhHhc
Q psy17187 93 TTEKPAVYLN 102 (123)
Q Consensus 93 ~mE~~IL~~l 102 (123)
..=..|.+.+
T Consensus 217 ~~~~~l~~~~ 226 (260)
T 2cch_B 217 PCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 28
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=91.09 E-value=0.39 Score=37.20 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=59.9
Q ss_pred HHHHHHhHhcCCchhhHHHHHHHHHHccccCC-ccCcCceehhhhhHHHHhhhhhccCCCH---HhHHHhhcCCCCHHHH
Q psy17187 16 SSLLQLCEERHCEYQVFPYAVSIMDRFLCYCP-MEKSQLQLTASACLLIASKIRECHALCV---EDLVYYSDYTFSPHTL 91 (123)
Q Consensus 16 ~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~-i~~~~lqLlg~tcL~iAsK~eE~~~~~~---~~l~~~~~~~~t~~ei 91 (123)
+++......++.+.+...+|..+++.-+.... .-...-..+|++|+++|+++.+...|.- .......+..++.++|
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l 234 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELL 234 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHH
Confidence 35566667777788888889888866553222 3445667899999999999876432211 1111122345799999
Q ss_pred HHHHHHHhHhcCC
Q psy17187 92 KTTEKPAVYLNNT 104 (123)
Q Consensus 92 ~~mE~~IL~~ln~ 104 (123)
.+.-..|++.++-
T Consensus 235 ~~i~~~il~~y~~ 247 (358)
T 2pk2_A 235 DELTHEFLQILEK 247 (358)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988743
No 29
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=90.60 E-value=1.1 Score=32.64 Aligned_cols=86 Identities=8% Similarity=-0.121 Sum_probs=57.4
Q ss_pred HHHHHHHhHhcCCchhh----HHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccC----CC-HHhHHHhhcCC
Q psy17187 15 YSSLLQLCEERHCEYQV----FPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHA----LC-VEDLVYYSDYT 85 (123)
Q Consensus 15 i~W~~~v~~~~~l~~~t----l~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~----~~-~~~l~~~~~~~ 85 (123)
.+|+.......+.+.++ ..+|-.+++.-+.....-...-..+|++|+++|.+..+..+ +. .+.+...+ .
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t--~ 229 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL--G 229 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHH--T
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHH--C
Confidence 35566666666776665 34566777766555555566778899999999999875321 22 34444454 4
Q ss_pred CCHHHHHHHHHHHhHhc
Q psy17187 86 FSPHTLKTTEKPAVYLN 102 (123)
Q Consensus 86 ~t~~ei~~mE~~IL~~l 102 (123)
++.+++...=..|.+.+
T Consensus 230 ~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 230 CDVSVLQAAVEQILTSV 246 (257)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 68999999888777664
No 30
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=88.75 E-value=0.63 Score=34.33 Aligned_cols=82 Identities=13% Similarity=0.065 Sum_probs=57.0
Q ss_pred HHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHHHHHH
Q psy17187 16 SSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSPHTLKTTE 95 (123)
Q Consensus 16 ~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei~~mE 95 (123)
+++...+...+.+.++..+|-.+++.-+.....-...-..+|++|+++|.+..+.. +-..++...++ |+.++|...=
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~tg--~~~~~l~~~~ 216 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHYLS--YTEESLLPVM 216 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHSC--CCSSTTTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHC--CCHHHHHHHH
Confidence 56666677778888888889888888776666666777889999999999987543 22334444443 4556666555
Q ss_pred HHHhH
Q psy17187 96 KPAVY 100 (123)
Q Consensus 96 ~~IL~ 100 (123)
..+.+
T Consensus 217 ~~l~~ 221 (269)
T 2b9r_A 217 QHLAK 221 (269)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 31
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=87.11 E-value=0.12 Score=39.89 Aligned_cols=66 Identities=8% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHh
Q psy17187 15 YSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYY 81 (123)
Q Consensus 15 i~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~ 81 (123)
.+.+...+..++++.++...|..++++.....-.....-.-++++|+++|+++.+. +.+.+++...
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~-~~t~~eIa~~ 301 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQT 301 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHH
Confidence 36677888889999999999999999887665566778888999999999998653 2334444433
No 32
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=85.38 E-value=3.1 Score=31.25 Aligned_cols=86 Identities=8% Similarity=-0.088 Sum_probs=52.5
Q ss_pred HHHHHhHhcCCchhhH----HHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCH----HhHHHhhcCCCCH
Q psy17187 17 SLLQLCEERHCEYQVF----PYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCV----EDLVYYSDYTFSP 88 (123)
Q Consensus 17 W~~~v~~~~~l~~~tl----~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~----~~l~~~~~~~~t~ 88 (123)
|+......++.+.+.. ..|-++++.-+.....-...-..+|++|+++|.+.-+..++.. +.+..++ .|+.
T Consensus 174 fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~t--g~~~ 251 (306)
T 3g33_B 174 FLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGIT--GTEV 251 (306)
T ss_dssp GHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHH--TCCH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH--CCCH
Confidence 4444444555544322 3455555544444444556677899999999999876555442 3444444 4689
Q ss_pred HHHHHHHHHHhHhcCC
Q psy17187 89 HTLKTTEKPAVYLNNT 104 (123)
Q Consensus 89 ~ei~~mE~~IL~~ln~ 104 (123)
+++...-..|++.+.-
T Consensus 252 ~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 252 DCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888887654
No 33
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=84.54 E-value=0.19 Score=38.88 Aligned_cols=67 Identities=7% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHh
Q psy17187 14 LYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYY 81 (123)
Q Consensus 14 li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~ 81 (123)
-.+++...+..++++.++.-.|..++.+.....-.....-.-++++|+++|+++... ..+.+++...
T Consensus 235 p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~-~~t~~eIa~v 301 (345)
T 4bbr_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQT 301 (345)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 447888899999999999999999998888765566777888999999999998653 3445555443
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=84.37 E-value=3.4 Score=30.24 Aligned_cols=88 Identities=8% Similarity=-0.031 Sum_probs=55.1
Q ss_pred HHHHHHhHhcCCchhhH----HHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhcc----C---CC-HHhHHHhhc
Q psy17187 16 SSLLQLCEERHCEYQVF----PYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECH----A---LC-VEDLVYYSD 83 (123)
Q Consensus 16 ~W~~~v~~~~~l~~~tl----~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~----~---~~-~~~l~~~~~ 83 (123)
+|+......++.+.++. ..|..+++..+.....-...-..+|++|+++|.+.-+.. + .. .+.+..+++
T Consensus 159 ~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~ 238 (271)
T 2w96_A 159 DFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIK 238 (271)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHC
Confidence 55666666667666553 245556654433333334566789999999999865421 1 11 234555554
Q ss_pred CCCCHHHHHHHHHHHhHhcCCc
Q psy17187 84 YTFSPHTLKTTEKPAVYLNNTH 105 (123)
Q Consensus 84 ~~~t~~ei~~mE~~IL~~ln~~ 105 (123)
++.+++...=..|++.++-.
T Consensus 239 --v~~~~l~~c~~~i~~l~~~~ 258 (271)
T 2w96_A 239 --CDPDCLRACQEQIEALLESS 258 (271)
T ss_dssp --SCHHHHHHHHHHHHHHHTTT
T ss_pred --cCHHHHHHHHHHHHHHHHHH
Confidence 68999999988888876543
No 35
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=80.25 E-value=9.7 Score=27.81 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccC---CccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCH
Q psy17187 12 VFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYC---PMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSP 88 (123)
Q Consensus 12 ~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~---~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~ 88 (123)
..+.+-|..++++-+++..++--||-+--.|.-.. ...-.+-|=++++|++||+.- -.+|+++.++-. -+.+...
T Consensus 13 P~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~-~~~PiplaE~r~-lD~sL~D 90 (260)
T 3h4c_A 13 PTMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEE-AQQPLPLAEVRC-LDSSLGD 90 (260)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHH-TTCCCCHHHHHH-HCTTCCC
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHH-cCCCccHHHHHH-HhhhhhH
Confidence 45667778999999999999999999988887553 344566788999999999973 246888888653 4555554
Q ss_pred HHHHHHHHHHhHhcCC
Q psy17187 89 HTLKTTEKPAVYLNNT 104 (123)
Q Consensus 89 ~ei~~mE~~IL~~ln~ 104 (123)
-++++.| |++.+|.
T Consensus 91 velrr~E--iv~~l~l 104 (260)
T 3h4c_A 91 VELRRAD--IVRELHL 104 (260)
T ss_dssp HHHHHHH--HHHHTTC
T ss_pred HHHHHHH--HHHHccC
Confidence 4555544 4555543
No 36
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=77.26 E-value=5 Score=30.34 Aligned_cols=75 Identities=9% Similarity=-0.044 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCC-HHhHHHhhcCCCCHHHHHHHHHHHhHhcCC
Q psy17187 30 QVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALC-VEDLVYYSDYTFSPHTLKTTEKPAVYLNNT 104 (123)
Q Consensus 30 ~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~-~~~l~~~~~~~~t~~ei~~mE~~IL~~ln~ 104 (123)
+....|..+++.-+.....-...-..+|++|+++|++......+. ...+....+..++.+++...=..|......
T Consensus 186 ~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~ 261 (323)
T 1jkw_A 186 ILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKK 261 (323)
T ss_dssp HHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHc
Confidence 445667777776543333334566789999999999987654333 222323334567778888877777766543
No 37
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=68.49 E-value=3.9 Score=27.80 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=26.0
Q ss_pred eehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHHHH
Q psy17187 54 QLTASACLLIASKIRECHALCVEDLVYYSDYTFSPHTLKT 93 (123)
Q Consensus 54 qLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei~~ 93 (123)
.|+-++|-.+|.++....|-.+++...+ .+.||++|=.+
T Consensus 112 ~Lldl~c~~vA~~ikgkt~eeir~~f~I-~nd~t~eEe~~ 150 (160)
T 2p1m_A 112 NLLDLTCQTVADMIKGKTPEEIRTTFNI-KNDFTPEEEEE 150 (160)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHTTC-CCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCC-CCCCCHHHHHH
Confidence 4788899999999876544334444443 35799876543
No 38
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=65.54 E-value=8.3 Score=26.49 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHHhHh-----------------------cCCchhhHH---HHHHHHHHccccCCccCcCceehhh
Q psy17187 5 AISIQTNVFLYSSLLQLCEE-----------------------RHCEYQVFP---YAVSIMDRFLCYCPMEKSQLQLTAS 58 (123)
Q Consensus 5 ~Is~~~R~~li~W~~~v~~~-----------------------~~l~~~tl~---lAv~~lDr~ls~~~i~~~~lqLlg~ 58 (123)
.|+...=..+++|+..-... +++.+++++ +|.+|||. -.|+-+
T Consensus 56 nV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdI-----------k~Lldl 124 (169)
T 3v7d_A 56 NVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI-----------KPLLDA 124 (169)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTC-----------HHHHHH
T ss_pred CCCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCc-----------HHHHHH
Confidence 46777778888888663321 345555554 35565554 357889
Q ss_pred hhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHHHH
Q psy17187 59 ACLLIASKIRECHALCVEDLVYYSDYTFSPHTLKT 93 (123)
Q Consensus 59 tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei~~ 93 (123)
+|-.+|.++....|=.++++..+. +.||++|-.+
T Consensus 125 ~c~~vA~~ikgktpeeiR~~f~I~-nd~t~eEe~~ 158 (169)
T 3v7d_A 125 GCKVVAEMIRGRSPEEIRRTFNIV-NDFTPEEEAA 158 (169)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCC-CCCCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCC-CCCCHHHHHH
Confidence 999999998766443344433333 5699986543
No 39
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=63.58 E-value=8.6 Score=25.89 Aligned_cols=77 Identities=9% Similarity=0.045 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHHHhHh------------------------cCCchhhHH---HHHHHHHHccccCCccCcCceehh
Q psy17187 5 AISIQTNVFLYSSLLQLCEE------------------------RHCEYQVFP---YAVSIMDRFLCYCPMEKSQLQLTA 57 (123)
Q Consensus 5 ~Is~~~R~~li~W~~~v~~~------------------------~~l~~~tl~---lAv~~lDr~ls~~~i~~~~lqLlg 57 (123)
.|++..=..+++|+..-... ++++.++++ +|.+|||- -.|+-
T Consensus 48 ~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I-----------~~Lld 116 (159)
T 2ast_A 48 NVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI-----------KGLLD 116 (159)
T ss_dssp TSCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTC-----------HHHHH
T ss_pred CccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhH-----------HHHHH
Confidence 46777788999999754411 456666654 35566653 34788
Q ss_pred hhhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHHHH
Q psy17187 58 SACLLIASKIRECHALCVEDLVYYSDYTFSPHTLKT 93 (123)
Q Consensus 58 ~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei~~ 93 (123)
++|-++|.++....|-.++++..+ .+.||++|-.+
T Consensus 117 ~~c~~va~~i~gkt~eeir~~f~I-~~d~t~eEe~~ 151 (159)
T 2ast_A 117 VTCKTVANMIKGKTPEEIRKTFNI-KNDFTEEEEAQ 151 (159)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHTTC-CCCSCTTHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHcCC-CCCCCHHHHHH
Confidence 899999999887544334444433 36688876543
No 40
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=63.37 E-value=15 Score=27.82 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=49.8
Q ss_pred HHHHhHhcCCchhhHHHHHHHHHHcccc----CCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHH
Q psy17187 18 LLQLCEERHCEYQVFPYAVSIMDRFLCY----CPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSPHTL 91 (123)
Q Consensus 18 ~~~v~~~~~l~~~tl~lAv~~lDr~ls~----~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei 91 (123)
..++|+.++++..|.--|...+.+.-+. .....+.-... .+||+.|++-.|...+++.++.+.|+- +..|+
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w-~acLY~a~~~~~~n~vsLt~LLr~~~l--si~~F 80 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELW-GICIFIAAVDLDEMSFTFTELQKNIEI--SVHKF 80 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHH-HHHHHHHHHHHTCCCSCHHHHHHHHTC--CHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHH-HHhHHHHhhccCCCcCcHHHHHHHcCC--CHHHH
Confidence 4578999999999999999999996653 12333333334 445999998777788999999888753 44444
No 41
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=62.30 E-value=26 Score=22.01 Aligned_cols=80 Identities=21% Similarity=0.211 Sum_probs=55.1
Q ss_pred HHHHhHhcCCchhhHHHHHHHHHHccccCC------ccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHH
Q psy17187 18 LLQLCEERHCEYQVFPYAVSIMDRFLCYCP------MEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSPHTL 91 (123)
Q Consensus 18 ~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~------i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei 91 (123)
+.++|-+||+.. ....|-.++++|=..-+ ++-++ -...++|++.|+|..-. .++-.++...++ .++.|+
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~-P~f~aaA~~~acr~~K~-kVdK~KL~~~s~--lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSR-PLFTSAALLSACKILKL-KVDKNKMVATSG--VKKAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTS-HHHHHHHHHHHHHHTTC-CCCHHHHHHTTC--BCHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccc-cHHHHHHHHHHHHHHcc-CCCHHHHHHHHC--CCHHHH
Confidence 457889999765 77788899999986532 22333 34677899999998643 444556665554 468888
Q ss_pred HHHHHHHhHhc
Q psy17187 92 KTTEKPAVYLN 102 (123)
Q Consensus 92 ~~mE~~IL~~l 102 (123)
-+.|..+-+..
T Consensus 81 ~~l~~~~e~~~ 91 (95)
T 3m03_A 81 DRLCKQLEKIG 91 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887765543
No 42
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=60.01 E-value=8.4 Score=25.52 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHHhHh------------------------cCCchhhHH---HHHHHHHHccccCCccCcCceehh
Q psy17187 5 AISIQTNVFLYSSLLQLCEE------------------------RHCEYQVFP---YAVSIMDRFLCYCPMEKSQLQLTA 57 (123)
Q Consensus 5 ~Is~~~R~~li~W~~~v~~~------------------------~~l~~~tl~---lAv~~lDr~ls~~~i~~~~lqLlg 57 (123)
.|+...=+.+++|+..-... ++++.++++ +|.+|||- -.|+-
T Consensus 43 ~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I-----------~~Lld 111 (141)
T 1fs1_B 43 NVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI-----------KGLLD 111 (141)
T ss_dssp TCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHHHHHHTC-----------HHHHH
T ss_pred CcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhh-----------hHHHH
Confidence 56777778889998654311 455666655 45666654 34677
Q ss_pred hhhHHHHhhhhhc
Q psy17187 58 SACLLIASKIREC 70 (123)
Q Consensus 58 ~tcL~iAsK~eE~ 70 (123)
.+|-.+|.++...
T Consensus 112 l~c~~vA~~ikgk 124 (141)
T 1fs1_B 112 VTCKTVANMIKGK 124 (141)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 8888888888654
No 43
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=56.07 E-value=39 Score=24.75 Aligned_cols=57 Identities=14% Similarity=0.027 Sum_probs=33.3
Q ss_pred HHHHHHHccccCCccCcCceehhhhhHHHHhhhhhccCCCHHhHHHhhcCCCCHHHHHHHHHHHhHh
Q psy17187 35 AVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFSPHTLKTTEKPAVYL 101 (123)
Q Consensus 35 Av~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~ 101 (123)
+..++|.-+.....-......+|++|+++|+. .+.+...+ .|+.++|...-..+...
T Consensus 183 ~~~llelsl~d~~~l~~~PS~iAaAai~la~~--------~~~l~~~t--g~~~~~i~~c~~~l~~~ 239 (283)
T 1w98_B 183 IAELLDLCVLDVDCLEFPYGILAASALYHFSS--------SELMQKVS--GYQWCDIENCVKWMVPF 239 (283)
T ss_dssp HHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC--------HHHHHHHS--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC--------hHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 33344433332233344556689999999875 23444444 36888888877766544
No 44
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=43.26 E-value=20 Score=17.40 Aligned_cols=18 Identities=11% Similarity=-0.025 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhHhcCCc
Q psy17187 88 PHTLKTTEKPAVYLNNTH 105 (123)
Q Consensus 88 ~~ei~~mE~~IL~~ln~~ 105 (123)
.++|.++|..|-+.|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 378999999999998876
No 45
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=36.53 E-value=22 Score=25.08 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHHccccCCccCcCceehhhhhHHHHhhhhh-ccCCCHHhHHHhhcCCC
Q psy17187 8 IQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRE-CHALCVEDLVYYSDYTF 86 (123)
Q Consensus 8 ~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr~ls~~~i~~~~lqLlg~tcL~iAsK~eE-~~~~~~~~l~~~~~~~~ 86 (123)
..+|..+..|+ +.|+.+|++..-+|-+.-+++. +++.-+-.+=+.++-+..- ...|.+.++. ..-.|
T Consensus 112 F~~~eNI~~FL-~ac~~~Gvp~~~lFet~DL~e~---------kn~~~V~~cL~aL~~~a~~~G~~P~i~~l~--g~~~F 179 (193)
T 3i6x_A 112 FRHTDNVIQWL-NAMDEIGLPKIFYPETTDIYDR---------KNMPRCIYCIHALSLYLFKLGLAPQIQDLY--GKVDF 179 (193)
T ss_dssp GGGHHHHHHHH-HHHHHHTCCGGGCCCHHHHHSC---------SCHHHHHHHHHHHHHHHHHTTSSCCCCCCT--TTCCC
T ss_pred hHHHHHHHHHH-HHHHHcCCCcccCCCcHHHhcC---------CCHHHHHHHHHHHHHHHhhCCCCCCccccc--CCCCc
Confidence 34566666665 6777899998877777766653 2222222222222222221 2345555543 35679
Q ss_pred CHHHHHHHHHHH
Q psy17187 87 SPHTLKTTEKPA 98 (123)
Q Consensus 87 t~~ei~~mE~~I 98 (123)
|.+||.+|+..+
T Consensus 180 t~eei~~~~~~l 191 (193)
T 3i6x_A 180 TEEEINNMKTEL 191 (193)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHHh
Confidence 999999999874
No 46
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=32.66 E-value=59 Score=19.27 Aligned_cols=36 Identities=8% Similarity=-0.069 Sum_probs=26.3
Q ss_pred CCccCCCHHHHHHHHHHH--------HHHhHhcCCchhhHHHHH
Q psy17187 1 MSAFAISIQTNVFLYSSL--------LQLCEERHCEYQVFPYAV 36 (123)
Q Consensus 1 ~~~~~Is~~~R~~li~W~--------~~v~~~~~l~~~tl~lAv 36 (123)
|+.-..|+..|..++..+ .+++..+|+++.|++--+
T Consensus 1 M~r~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~ 44 (97)
T 2jn6_A 1 MPTKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp CCCCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHH
Confidence 444456788887777655 378899999999987644
No 47
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=29.12 E-value=1e+02 Score=18.93 Aligned_cols=39 Identities=8% Similarity=0.035 Sum_probs=30.3
Q ss_pred ccCCCHHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHH
Q psy17187 3 AFAISIQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDR 41 (123)
Q Consensus 3 ~~~Is~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr 41 (123)
.+.|++.++....+-|.+..++.+++.+..-.....+.+
T Consensus 70 ~~~I~~~~f~~wl~~~~~al~~~~~~~~~~~~~~~~~~~ 108 (116)
T 1dlw_A 70 NMGVSNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAET 108 (116)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHH
Confidence 357899999999999999999998887766555555544
No 48
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Probab=29.08 E-value=23 Score=16.54 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHccccC
Q psy17187 30 QVFPYAVSIMDRFLCYC 46 (123)
Q Consensus 30 ~tl~lAv~~lDr~ls~~ 46 (123)
..+.++..-+|||++..
T Consensus 3 Si~~L~~is~dRy~aI~ 19 (32)
T 1hll_A 3 SIVHLCAISLDRYWSIT 19 (32)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 46778889999999763
No 49
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=27.92 E-value=70 Score=18.46 Aligned_cols=31 Identities=10% Similarity=-0.061 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHHhHhcCCchhhHHHHHHHH
Q psy17187 5 AISIQTNVFLYSSLLQLCEERHCEYQVFPYAVSIM 39 (123)
Q Consensus 5 ~Is~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~l 39 (123)
.+||..+..+.+|+-+ ++++++.+-.|+.+.
T Consensus 17 ~ls~~e~~~i~~w~~~----~~~~~elI~~A~~~a 47 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSD----DKTDPDLVRSALREA 47 (78)
T ss_dssp CCCHHHHHHHHHHHTT----TCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----hCCCHHHHHHHHHHH
Confidence 6788888888888854 688899988887665
No 50
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=27.42 E-value=47 Score=20.85 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHhcCCchhhHHHHHHHHHH
Q psy17187 12 VFLYSSLLQLCEERHCEYQVFPYAVSIMDR 41 (123)
Q Consensus 12 ~~li~W~~~v~~~~~l~~~tl~lAv~~lDr 41 (123)
..+++|+.+-.+...-..+.+.+|-.+++.
T Consensus 54 ~dlVdWL~~~~~~~~~r~eAv~lg~~Ll~~ 83 (105)
T 1fsh_A 54 ADVVDWLYTHVEGFKERREARKYASSMLKH 83 (105)
T ss_dssp HHHHHHHHHHCCCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCCCCHHHHHHHHHHHHHC
Confidence 578999998775555567788888777775
No 51
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=26.24 E-value=67 Score=20.50 Aligned_cols=29 Identities=7% Similarity=-0.087 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhHhcCCchhhHHHHHHHHHH
Q psy17187 12 VFLYSSLLQLCEERHCEYQVFPYAVSIMDR 41 (123)
Q Consensus 12 ~~li~W~~~v~~~~~l~~~tl~lAv~~lDr 41 (123)
..+++||++-. ...-..|.++++-.++|.
T Consensus 41 selVdWLi~~~-~~~~R~EAv~lgq~Ll~~ 69 (109)
T 1uhw_A 41 SGVIDWLVSNK-LVRNRQEGLMISASLLSE 69 (109)
T ss_dssp HHHHHHHHHHT-SSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC-CCCCHHHHHHHHHHHHHC
Confidence 47999999944 333356788887777775
No 52
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=24.74 E-value=1.3e+02 Score=18.80 Aligned_cols=39 Identities=8% Similarity=-0.097 Sum_probs=30.9
Q ss_pred ccCCCHHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHH
Q psy17187 3 AFAISIQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDR 41 (123)
Q Consensus 3 ~~~Is~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr 41 (123)
++.|++.+|....+-|.+..+..+++++..-....++.+
T Consensus 77 ~~~I~~~~fd~wl~~~~~al~e~~~~~~~~~~~~~~~~~ 115 (128)
T 2bkm_A 77 RFEITPKRAEAWLACMRAAMDEIGLSGPAREQFYHRLVL 115 (128)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356899999999999999888888888777666666654
No 53
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=23.14 E-value=73 Score=20.91 Aligned_cols=29 Identities=10% Similarity=0.010 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHhcCCchhhHHHHHHHHHH
Q psy17187 12 VFLYSSLLQLCEERHCEYQVFPYAVSIMDR 41 (123)
Q Consensus 12 ~~li~W~~~v~~~~~l~~~tl~lAv~~lDr 41 (123)
..+++||.+-. ...-..|.++++-.+++.
T Consensus 51 sdlVdWLl~~~-~~~sR~EAv~lg~~Ll~~ 79 (127)
T 2cso_A 51 NCVIDWLVSNQ-SVRNRQEGLMIASSLLNE 79 (127)
T ss_dssp HHHHHHHHHTT-SCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC-CCCCHHHHHHHHHHHHHC
Confidence 47899999943 233457888888777764
No 54
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=22.86 E-value=1.4e+02 Score=18.44 Aligned_cols=39 Identities=3% Similarity=-0.055 Sum_probs=30.6
Q ss_pred ccCCCHHHHHHHHHHHHHHhHhcCCchhhHHHHHHHHHH
Q psy17187 3 AFAISIQTNVFLYSSLLQLCEERHCEYQVFPYAVSIMDR 41 (123)
Q Consensus 3 ~~~Is~~~R~~li~W~~~v~~~~~l~~~tl~lAv~~lDr 41 (123)
.+.|++.+|....+-|.+..+..+++++..--...++.+
T Consensus 75 ~~~I~~~~f~~wl~~~~~al~e~~~~~~~~~~~~~~~~~ 113 (123)
T 2bmm_A 75 PYRIGAEERDRWLTHMRAAVDDLALPAHLEQQLWEYLVY 113 (123)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356999999999999999999988888776655555543
No 55
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=20.56 E-value=83 Score=20.18 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhHhcCCchhhHHHHHHHHHH
Q psy17187 12 VFLYSSLLQLCEERHCEYQVFPYAVSIMDR 41 (123)
Q Consensus 12 ~~li~W~~~v~~~~~l~~~tl~lAv~~lDr 41 (123)
..+|+||.+-.. ..-..+.+.+|-.++|.
T Consensus 41 sdlVdWL~~~~~-~~sR~eAv~lgq~Ll~~ 69 (120)
T 1v3f_A 41 SSLVDWLISSNF-AASRLEAVTLASMLMEE 69 (120)
T ss_dssp HHHHHHHHHTTS-CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHHHC
Confidence 578999998542 33356788888888885
Done!