RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17187
(123 letters)
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri
[TaxId: 10381]}
Length = 127
Score = 72.2 bits (177), Expect = 3e-18
Identities = 32/79 (40%), Positives = 41/79 (51%)
Query: 18 LLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVED 77
+ LCE + VFP +VSI+DR+LC K LQ +AC+LI SKIR + V
Sbjct: 38 MHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSK 97
Query: 78 LVYYSDYTFSPHTLKTTEK 96
L Y S F+ L EK
Sbjct: 98 LTYLSCDCFTNLELINQEK 116
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68
[TaxId: 33708]}
Length = 141
Score = 71.1 bits (174), Expect = 2e-17
Identities = 20/79 (25%), Positives = 35/79 (44%)
Query: 18 LLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVED 77
+ +C++ + VFP AV+++D +++ Q TA+ L IA K+R +
Sbjct: 51 MFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQ 110
Query: 78 LVYYSDYTFSPHTLKTTEK 96
L Y + L T E
Sbjct: 111 LAYLCGGATTADKLLTLEV 129
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 132
Score = 68.4 bits (167), Expect = 1e-16
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 18 LLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVED 77
+ +C+E + E V A++++DR L + K Q T SACLL+ASK+R +
Sbjct: 43 MFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSS 102
Query: 78 LVYYSDYTFSPHTLKTTEK 96
L Y + +FS L EK
Sbjct: 103 LCYAAADSFSRQELIDQEK 121
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 128
Score = 64.2 bits (156), Expect = 6e-15
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 18 LLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVED 77
L+++ EE + + AV+ +DRFL + + +LQL +A +L+ASK E + V +
Sbjct: 38 LVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAE 97
Query: 78 LVYYSDYTFSPHTLKTTEK 96
VY +D T++ + E
Sbjct: 98 FVYITDDTYTKKQVLRMEH 116
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 63.5 bits (154), Expect = 1e-14
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 18 LLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKS-QLQLTASACLLIASKIRECHALCVE 76
L+++CE + F A DR++ LQL + L IA+K+ E + +
Sbjct: 50 LMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLH 109
Query: 77 DLVYYSDYTFSPHTLKTTEK 96
Y +D S + T E
Sbjct: 110 QFAYVTDGACSGDEILTMEL 129
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId:
9606]}
Length = 144
Score = 47.7 bits (113), Expect = 2e-08
Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 10/89 (11%)
Query: 18 LLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECH------ 71
+ + Y + RF + ++ +T + CL +A K+ E
Sbjct: 44 IFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDI 103
Query: 72 ----ALCVEDLVYYSDYTFSPHTLKTTEK 96
+ D+ + + E+
Sbjct: 104 IKTARSLLNDVQFGQFGDDPKEEVMVLER 132
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 151
Score = 47.3 bits (112), Expect = 2e-08
Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 6/85 (7%)
Query: 18 LLQLCEERHCEY--QVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHA--- 72
LL+ C V A RF + + ++ C +A K+ E +
Sbjct: 54 LLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSP 113
Query: 73 -LCVEDLVYYSDYTFSPHTLKTTEK 96
+ + E
Sbjct: 114 QFVGNLRESPLGQEKALEQILEYEL 138
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 143
Score = 46.6 bits (110), Expect = 4e-08
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 18 LLQLCEERHCEYQVFPYAVSIMDRFLCYCPMEKSQLQLTASACLLIASKIRECHALCVED 77
+ ++ + + A+ M RF + K + +S L +A+K+ E +E
Sbjct: 38 IQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARK-LEH 96
Query: 78 LVYYSDYTFSPHTLKTTEKPAVYLNNTHVIMK 109
++ + P K YL T ++
Sbjct: 97 VIKVAHACLHPLEPLLDTKCDAYLQQTRELVI 128
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent
helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 25.2 bits (55), Expect = 1.5
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 14 LYSSLLQLCEERHCEYQVFPYAV---SIMDRFLCYCPMEKSQLQ 54
LY L++ ++ + V P + I+ P ++
Sbjct: 15 LYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVK 58
>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}
Length = 235
Score = 24.6 bits (52), Expect = 3.3
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 32 FPYAVSIMDRFLCYCPMEKSQLQLTASACL 61
P+ V++++ +LC + +TA+ C
Sbjct: 12 QPWQVAVINEYLCGGVLIDPSWVITAAHCY 41
>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine
protease 2 (MASP-2), catalytic domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 242
Score = 24.0 bits (50), Expect = 6.2
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 32 FPYAVSIMDRFLCYCPMEKSQLQLTASACL 61
FP+ V I+ + LTA+ +
Sbjct: 12 FPWQVLILGGTTAAGALLYDNWVLTAAHAV 41
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 124
Score = 23.6 bits (51), Expect = 6.9
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 43 LCYCPMEKSQLQLTASACLLIASKIRECHALCVEDLVYYSDYTFS 87
+ P K + A A +A + E L+ + YT
Sbjct: 34 IDADPYLKYLPSVIAGAAFHLALYTVTGQS-WPESLIRKTGYTLE 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.133 0.402
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 417,076
Number of extensions: 16343
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 13
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.3 bits)