BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17188
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/270 (76%), Positives = 220/270 (81%), Gaps = 16/270 (5%)
Query: 65 LAGIPGGKPAYSYHVTTDGQMQPVPFPPDALIGPGIPRHARQINTLSHGEVVCAVTISNP 124
G G KPAYS+HVT DGQMQPVPFPPDALIGPGIPRHARQINTL+HGEVVCAVTISNP
Sbjct: 3 FQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNP 62
Query: 125 TKYVYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLS 184
T++VYTGGKGCVKVWDIS PG+K+PVSQLDCL RDNYIRS KLLPDG TLIVGGEAS LS
Sbjct: 63 TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122
Query: 185 IWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 244
IWDLA+PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH
Sbjct: 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182
Query: 245 TDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNY 304
TDGASCIDIS DGTKLWTGGLDNTVRSWDLREG QL +
Sbjct: 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREG----------------RQLQQHDFTSQ 226
Query: 305 IRSVKLLPDGRTLIVGGEASNLSIWDLASP 334
I S+ P G L VG E+SN+ + + P
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256
Score = 261 bits (666), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 126/136 (92%), Positives = 129/136 (94%)
Query: 369 KSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPT 428
K CVKVWDIS PG+K+PVSQLDCL RDNYIRS KLLPDG TLIVGGEAS LSIWDLA+PT
Sbjct: 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130
Query: 429 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 488
PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID
Sbjct: 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190
Query: 489 ISADGTKLWTGGLDNT 504
IS DGTKLWTGGLDNT
Sbjct: 191 ISNDGTKLWTGGLDNT 206
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 149/296 (50%), Gaps = 55/296 (18%)
Query: 244 HTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDN 303
H + + IS ++TGG +GCVKVWDIS PG+K+PVSQLDCL RDN
Sbjct: 50 HGEVVCAVTISNPTRHVYTGG-----------KGCVKVWDISHPGNKSPVSQLDCLNRDN 98
Query: 304 YIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPF- 362
YIRS KLLPDG TLIVGGEAS LSIWDLA+PTPRIKAELTSSAPACYALAISPDSK F
Sbjct: 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 363 --------------------FSSH-HYKSCVKVWDISQPGSKTPVSQLDC---------- 391
F H SC+ DIS G+K LD
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCI---DISNDGTKLWTGGLDNTVRSWDLREG 215
Query: 392 --LQRDNY---IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 446
LQ+ ++ I S+ P G L VG E+SN+ + + P K +L +L
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSLK 272
Query: 447 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
+ K S D + W + Q + + SC DIS D + TG D
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC-DISVDDKYIVTGSGD 327
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 146/348 (41%), Gaps = 48/348 (13%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ V PDG+T+ + + +W+ ++ LT + + + +A SPD + S
Sbjct: 265 VNGVAFRPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 321
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKV 281
D + +W+ + Q L + GH+ + S DG + + D TV+ W+ R G +
Sbjct: 322 SDDKTVKLWNRNGQHL-QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQL-- 377
Query: 282 WDISQPGSKTPVSQLDCLQ-RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
L L + +R V PDG+T+ + + +W+ ++
Sbjct: 378 --------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQ 420
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRS 400
LT + + + +A SPD ++ +S VK+W+ + +T + +R
Sbjct: 421 TLTGHSSSVWGVAFSPDDQT--IASASDDKTVKLWNRNGQLLQTLTGH------SSSVRG 472
Query: 401 VKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 460
V PDG+T+ + + +W+ ++ LT + + +A SPD + S D
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 529
Query: 461 GNIAVWDLHNQTLVRQFQGHT----------DGASCIDISADGT-KLW 497
+ +W+ + Q L++ GH+ DG + S+D T KLW
Sbjct: 530 KTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/351 (21%), Positives = 148/351 (42%), Gaps = 38/351 (10%)
Query: 145 GSKTPVSQLDCLQ-RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSA 203
GS V + + L+ + +R V PDG+T+ + + +W+ ++ LT +
Sbjct: 1 GSHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHS 57
Query: 204 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTG 263
+ + +A SPD + S D + +W+ + Q L++ GH+ + S DG + +
Sbjct: 58 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASA 116
Query: 264 GLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQ-RDNYIRSVKLLPDGRTLIVGGE 322
D TV+ W+ R G + L L + + V PDG+T+ +
Sbjct: 117 SDDKTVKLWN-RNGQL----------------LQTLTGHSSSVWGVAFSPDGQTIASASD 159
Query: 323 ASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS 382
+ +W+ ++ LT + + + +A SPD ++ +S VK+W+ +
Sbjct: 160 DKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDGQT--IASASDDKTVKLWNRNGQLL 214
Query: 383 KTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPAC 442
+T + +R V PDG+T+ + + +W+ ++ LT + +
Sbjct: 215 QTLTGH------SSSVRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSV 265
Query: 443 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADG 493
+A PD + S D + +W+ + Q L++ GH+ + S DG
Sbjct: 266 NGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDG 315
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 139/333 (41%), Gaps = 37/333 (11%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+R V PDG+T+ + + +W+ ++ LT + + + +A SPD + S
Sbjct: 101 VRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 157
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKV 281
D + +W+ + Q L++ GH+ + S DG + + D TV+ W+ R G +
Sbjct: 158 SDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQL-- 213
Query: 282 WDISQPGSKTPVSQLDCLQ-RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
L L + +R V PDG+T+ + + +W+ ++
Sbjct: 214 --------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQ 256
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRS 400
LT + + +A PD ++ +S VK+W+ + +T + +
Sbjct: 257 TLTGHSSSVNGVAFRPDGQT--IASASDDKTVKLWNRNGQLLQTLTGH------SSSVWG 308
Query: 401 VKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 460
V PDG+T+ + + +W+ + LT + + + +A SPD + S D
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWNRNGQHLQT---LTGHSSSVWGVAFSPDGQTIASASDD 365
Query: 461 GNIAVWDLHNQTLVRQFQGHTDGASCIDISADG 493
+ +W+ + Q L++ GH+ + S DG
Sbjct: 366 KTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDG 397
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/330 (20%), Positives = 138/330 (41%), Gaps = 37/330 (11%)
Query: 165 VKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 224
V PDG+T+ + + +W+ ++ LT + + +A SPD + S D
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 242
Query: 225 GNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDI 284
+ +W+ + Q L++ GH+ + + DG + + D TV+ W+ R G +
Sbjct: 243 KTVKLWNRNGQ-LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQL----- 295
Query: 285 SQPGSKTPVSQLDCLQ-RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELT 343
L L + + V PDG+T+ + + +W+ + LT
Sbjct: 296 -----------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT---LT 341
Query: 344 SSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKL 403
+ + + +A SPD ++ +S VK+W+ + +T + +R V
Sbjct: 342 GHSSSVWGVAFSPDGQT--IASASDDKTVKLWNRNGQLLQTLTGH------SSSVRGVAF 393
Query: 404 LPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 463
PDG+T+ + + +W+ ++ LT + + + +A SPD + S D +
Sbjct: 394 SPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450
Query: 464 AVWDLHNQTLVRQFQGHTDGASCIDISADG 493
+W+ + Q L++ GH+ + S DG
Sbjct: 451 KLWNRNGQ-LLQTLTGHSSSVRGVAFSPDG 479
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 120/308 (38%), Gaps = 39/308 (12%)
Query: 95 LIGPGIPRH--ARQINTLSHGEVVCAVTISNPTKYVYTGGKGCVKVWDISQPGSKTPVSQ 152
L P +PR +L H VVC V SN +Y+ TG +V+ +S +S
Sbjct: 44 LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSD 103
Query: 153 LDCLQRD-------------NYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAEL 199
+D YIRSV PDG+ L G E + IWD+ + +I L
Sbjct: 104 DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN--RKIVMIL 161
Query: 200 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDGASCIDIS-AD 256
Y+L P S D + +WDL +L + DG + + +S D
Sbjct: 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE---DGVTTVAVSPGD 218
Query: 257 GTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRT 316
G + G LD VR WD G + S+ S T +D+ + SV DG++
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG-------HKDS-VYSVVFTRDGQS 270
Query: 317 LIVGGEASNLSIWDLASPTPRIKA--------ELTSSAPACYALAISPDSKSPFFSSHHY 368
++ G ++ +W+L + + + E+T + L+++ + S
Sbjct: 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 330
Query: 369 KSCVKVWD 376
V WD
Sbjct: 331 DRGVLFWD 338
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 22/174 (12%)
Query: 343 TSSAPA----CYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYI 398
TSS+P+ ++ SPD K F ++ +++WDI ++ V L ++D Y
Sbjct: 116 TSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIE---NRKIVMILQGHEQDIY- 169
Query: 399 RSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISP-DSKVCFSC 457
S+ P G L+ G + IWDL + + + +A+SP D K +
Sbjct: 170 -SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT---VAVSPGDGKYIAAG 225
Query: 458 CSDGNIAVWDLHNQTLVRQFQ-------GHTDGASCIDISADGTKLWTGGLDNT 504
D + VWD LV + GH D + + DG + +G LD +
Sbjct: 226 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 123/289 (42%), Gaps = 37/289 (12%)
Query: 99 GIPRHARQINTLSHGEVVCAVTISNPTKYVYTGG-KGCVKVWDISQPGSKTPVSQLDCLQ 157
GIP+ A + H V V IS+ ++ +G G +++WD++ + T +
Sbjct: 76 GIPQRALR----GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT---TGTTTRRFVGHT 128
Query: 158 RDNYIRSVKLLPDGRTLIVGGEASNLSIWD-LASPTPRIKAELTSSAPACYALAISPDSK 216
+D + SV D R ++ G + +W+ L ++ E S +C + + +
Sbjct: 129 KD--VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 186
Query: 217 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLRE 276
+ SC D + VW+L N L GHT + + +S DG+ +GG D WDL E
Sbjct: 187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
Query: 277 GCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP-- 334
G L L + I ++ P+ R + ++ IWDL
Sbjct: 247 G----------------KHLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWDLEGKII 289
Query: 335 TPRIKAELTSSA-----PACYALAISPDSKSPFFSSHHYKSCVKVWDIS 378
+K E+ S++ P C +LA S D ++ F + + + V+VW ++
Sbjct: 290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLF--AGYTDNLVRVWQVT 336
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 131/339 (38%), Gaps = 44/339 (12%)
Query: 182 NLSIWDLASPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTL--- 237
NL + + ++ L +A +P + S D I +W L
Sbjct: 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG 76
Query: 238 --VRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQ 295
R +GH+ S + IS+DG +G D T+R WDL G T +
Sbjct: 77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG-------------TTTRR 123
Query: 296 LDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD-LASPTPRIKAELTSSAPACYALAI 354
+D + SV D R ++ G + +W+ L ++ E S +C +
Sbjct: 124 FVGHTKD--VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC--VRF 179
Query: 355 SPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGG 414
SP+S +P S + VKVW+++ KT + + Y+ +V + PDG GG
Sbjct: 180 SPNSSNPIIVSCGWDKLVKVWNLANCKLKT-----NHIGHTGYLNTVTVSPDGSLCASGG 234
Query: 415 EASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG-NIAVWDLHNQTL 473
+ +WDL + AL SP+ + C + G +I +WDL + +
Sbjct: 235 KDGQAMLWDLNEGKHLYTLD---GGDIINALCFSPNRY--WLCAATGPSIKIWDLEGKII 289
Query: 474 VRQFQGHTDGAS-------CIDI--SADGTKLWTGGLDN 503
V + + S C + SADG L+ G DN
Sbjct: 290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN 328
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 445 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
+ IS D + S DG + +WDL T R+F GHT + S+D ++ +G D T
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 123/289 (42%), Gaps = 37/289 (12%)
Query: 99 GIPRHARQINTLSHGEVVCAVTISNPTKYVYTGG-KGCVKVWDISQPGSKTPVSQLDCLQ 157
GIP+ A + H V V IS+ ++ +G G +++WD++ + T +
Sbjct: 53 GIPQRALR----GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT---TGTTTRRFVGHT 105
Query: 158 RDNYIRSVKLLPDGRTLIVGGEASNLSIWD-LASPTPRIKAELTSSAPACYALAISPDSK 216
+D + SV D R ++ G + +W+ L ++ E S +C + + +
Sbjct: 106 KD--VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 163
Query: 217 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLRE 276
+ SC D + VW+L N L GHT + + +S DG+ +GG D WDL E
Sbjct: 164 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
Query: 277 GCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP-- 334
G L L + I ++ P+ R + ++ IWDL
Sbjct: 224 G----------------KHLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWDLEGKII 266
Query: 335 TPRIKAELTSSA-----PACYALAISPDSKSPFFSSHHYKSCVKVWDIS 378
+K E+ S++ P C +LA S D ++ F + + + V+VW ++
Sbjct: 267 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLF--AGYTDNLVRVWQVT 313
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 120/303 (39%), Gaps = 43/303 (14%)
Query: 217 VCFSCCSDGNIAVWDLHNQTL-----VRQFQGHTDGASCIDISADGTKLWTGGLDNTVRS 271
+ S D I +W L R +GH+ S + IS+DG +G D T+R
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 272 WDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD- 330
WDL G T + +D + SV D R ++ G + +W+
Sbjct: 90 WDLTTG-------------TTTRRFVGHTKD--VLSVAFSSDNRQIVSGSRDKTIKLWNT 134
Query: 331 LASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLD 390
L ++ E S +C + SP+S +P S + VKVW+++ KT +
Sbjct: 135 LGVCKYTVQDESHSEWVSC--VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-----N 187
Query: 391 CLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPD 450
+ Y+ +V + PDG GG+ +WDL + AL SP+
Sbjct: 188 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD---GGDIINALCFSPN 244
Query: 451 SKVCFSCCSDG-NIAVWDLHNQTLVRQFQGHTDGAS-------CIDI--SADGTKLWTGG 500
+ C + G +I +WDL + +V + + S C + SADG L+ G
Sbjct: 245 RY--WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 302
Query: 501 LDN 503
DN
Sbjct: 303 TDN 305
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 445 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
+ IS D + S DG + +WDL T R+F GHT + S+D ++ +G D T
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/325 (19%), Positives = 119/325 (36%), Gaps = 46/325 (14%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ V P ++ E + + +WD T + L + ++ K+ SC
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDY--ETGDFERTLKGHTDSVQDISFDHSGKLLASC 168
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
+D I +WD +R GH S + I +G + + D T++ W+++ G CVK
Sbjct: 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 228
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ G + ++R V+ DG + + +W +A T KA
Sbjct: 229 TF----TGHR------------EWVRMVRPNQDGTLIASCSNDQTVRVWVVA--TKECKA 270
Query: 341 ELTSSAPACYALAISPDSK------------------SPFFSSHHYKSCVKVWDISQPGS 382
EL ++ +P+S PF S +K+WD+S
Sbjct: 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS---- 326
Query: 383 KTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPAC 442
T + + + DN++R V G+ ++ + L +WD + R L +
Sbjct: 327 -TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN--KRCMKTLNAHEHFV 383
Query: 443 YALAISPDSKVCFSCCSDGNIAVWD 467
+L + + D + VW+
Sbjct: 384 TSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/333 (18%), Positives = 113/333 (33%), Gaps = 44/333 (13%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P P K L+ + P V S D I VWD R +GHTD
Sbjct: 96 PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 155
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQ----RDNYIR 306
I G L + D T++ WD + +C++ D+ +
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQ-------------------GFECIRTMHGHDHNVS 196
Query: 307 SVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSH 366
SV ++P+G ++ + +W++ + T + + + P+ +S
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGY----CVKTFTGHREWVRMVRPNQDGTLIASC 252
Query: 367 HYKSCVKVWDISQPGSKTPVSQ----LDCLQR--DNYIRSVKLLPDGRT---------LI 411
V+VW ++ K + + ++C+ ++ S+ T L+
Sbjct: 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 312
Query: 412 VGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ 471
G + +WD++ T L + K SC D + VWD N+
Sbjct: 313 SGSRDKTIKMWDVS--TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Query: 472 TLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
++ H + +D + TG +D T
Sbjct: 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/255 (17%), Positives = 97/255 (38%), Gaps = 34/255 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD +C++ D+ + SV ++P+G ++ + +W++
Sbjct: 174 IKLWDFQG---------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV--Q 222
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 251
T T + + D + SC +D + VW + + + + H CI
Sbjct: 223 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282
Query: 252 DIS----------ADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQR 301
+ A G++ G R+ +K+WD+S T + + +
Sbjct: 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-----TGMCLMTLVGH 337
Query: 302 DNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSP 361
DN++R V G+ ++ + L +WD + + T +A + ++ +P
Sbjct: 338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK----RCMKTLNAHEHFVTSLDFHKTAP 393
Query: 362 FFSSHHYKSCVKVWD 376
+ + VKVW+
Sbjct: 394 YVVTGSVDQTVKVWE 408
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Query: 171 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 230
G L+ G + +WD++ T L + K SC D + VW
Sbjct: 308 GPFLLSGSRDKTIKMWDVS--TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Query: 231 DLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLR 275
D N+ ++ H + +D + TG +D TV+ W+ R
Sbjct: 366 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 116/281 (41%), Gaps = 50/281 (17%)
Query: 239 RQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDC 298
R+ +GH+ S + +S +G + D+++R W+L+ G Q
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG---------------QCQYKF 105
Query: 299 LQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYA--LAISP 356
L + SV PD R ++ GG + L +W++ L+ A + + SP
Sbjct: 106 LGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHT---LSRGAHTDWVSCVRFSP 162
Query: 357 DSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEA 416
+P S + + VKVWD++ T D NY+ SV + PDG +
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDLATGRLVT-----DLKGHTNYVTSVTVSPDGSLCASSDKD 217
Query: 417 SNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFS-------CCSDGNIAVWDLH 469
+WDL K E S A +P +++CFS ++ I ++DL
Sbjct: 218 GVARLWDLT------KGEALSEMAAG-----APINQICFSPNRYWMCAATEKGIRIFDLE 266
Query: 470 NQTLVRQFQGHTDGA-----SCIDI--SADGTKLWTGGLDN 503
N+ ++ + G+ C+ I SADG+ L++G DN
Sbjct: 267 NKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDN 307
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 113/277 (40%), Gaps = 35/277 (12%)
Query: 112 HGEVVCAVTISNPTKYVYTGG-KGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPD 170
H V V +SN + + +++W++ Q G Q L + SV PD
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNL-QNGQ----CQYKFLGHTKDVLSVAFSPD 120
Query: 171 GRTLIVGGEASNLSIWDLASP-TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 229
R ++ GG + L +W++ + + +C + S D+ V S D + V
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 230 WDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGS 289
WDL LV +GHT+ + + +S DG+ + D R WDL +G +S+ +
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEA----LSEMAA 236
Query: 290 KTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSS---- 345
P++Q+ C + Y + + I+DL + I EL
Sbjct: 237 GAPINQI-CFSPNRY------------WMCAATEKGIRIFDLENKD--IIVELAPEHQGS 281
Query: 346 ---APACYALAISPDSKSPFFSSHHYKSCVKVWDISQ 379
P C ++A S D + + S + + ++VW +S+
Sbjct: 282 KKIVPECVSIAWSADGSTLY--SGYTDNVIRVWGVSE 316
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 114/273 (41%), Gaps = 48/273 (17%)
Query: 209 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 268
+A+S + S D ++ +W+L N +F GHT + S D ++ +GG DN
Sbjct: 73 VALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNA 132
Query: 269 VRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLP--DGRTLIVGGEASNL 326
+R W+++ C+ +S+ G+ T +++ V+ P D ++ GG + +
Sbjct: 133 LRVWNVKGECMHT--LSR-GAHT-----------DWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 327 SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDI------SQP 380
+WDLA T R+ +L ++ +SPD +S ++WD+ S+
Sbjct: 179 KVWDLA--TGRLVTDLKGHTNYVTSVTVSPDGS--LCASSDKDGVARLWDLTKGEALSEM 234
Query: 381 GSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSS-- 438
+ P++Q+ C + Y + + I+DL + I EL
Sbjct: 235 AAGAPINQI-CFSPNRY------------WMCAATEKGIRIFDLENKD--IIVELAPEHQ 279
Query: 439 -----APACYALAISPDSKVCFSCCSDGNIAVW 466
P C ++A S D +S +D I VW
Sbjct: 280 GSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 134/338 (39%), Gaps = 50/338 (14%)
Query: 111 SHGEVVCAVT--ISNPTKYVYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL 168
+H ++V A+ I N V + +W +++ V+Q +++ V L
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS 439
Query: 169 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 228
DG+ + G L +WDLA+ + ++A S D++ S D I
Sbjct: 440 SDGQFALSGSWDGELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 229 VWDLHNQ---TLVRQFQGHTDGASCIDISADGTKLWTGGLDNTV--RSWDLREGCVKVWD 283
+W+ + T+ +GH D SC+ S + L T+ SWD VKVW+
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPN-------TLQPTIVSASWD---KTVKVWN 547
Query: 284 ISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELT 343
+S ++ ++ Y+ +V + PDG GG+ + +WDLA E
Sbjct: 548 LSNCKLRSTLA-----GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602
Query: 344 SSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQL------DCLQRDN- 396
S +AL SP+ ++ H +K+WD+ SK+ V L + + DN
Sbjct: 603 S---VIHALCFSPNRYWLCAATEH---GIKIWDLE---SKSIVEDLKVDLKAEAEKADNS 653
Query: 397 ----------YIRSVKLLPDGRTLIVGGEASNLSIWDL 424
Y S+ DG TL G + +W +
Sbjct: 654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 110/288 (38%), Gaps = 38/288 (13%)
Query: 214 DSKVCFSCCSDGNIAVWDLHNQ-----TLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 268
++ + S D +I +W L R+ GH+ + +S+DG +G D
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 269 VRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSI 328
+R WDL G VS + + SV D R ++ + +
Sbjct: 454 LRLWDLAAG---------------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKL 498
Query: 329 WD-LASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVS 387
W+ L I + SP++ P S + VKVW++S ++ ++
Sbjct: 499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558
Query: 388 QLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAI 447
Y+ +V + PDG GG+ + +WDLA E S +AL
Sbjct: 559 G-----HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS---VIHALCF 610
Query: 448 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTK 495
SP+ + ++ I +WDL ++++V + +D+ A+ K
Sbjct: 611 SPN-RYWLCAATEHGIKIWDLESKSIVEDLK--------VDLKAEAEK 649
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 110/289 (38%), Gaps = 45/289 (15%)
Query: 112 HGEVVCAVTISNPTKYVYTGG-KGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPD 170
H V V +S+ ++ +G G +++WD++ VS + + SV D
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLA-----AGVSTRRFVGHTKDVLSVAFSLD 483
Query: 171 GRTLIVGGEASNLSIWDLASP---TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 227
R ++ + +W+ T E +C + + S D +
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 228 AVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQP 287
VW+L N L GHT S + +S DG+ +GG D V WDL EG
Sbjct: 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---------- 593
Query: 288 GSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPT--PRIKAELTSS 345
+L L+ ++ I ++ P+ R + + IWDL S + +K +L +
Sbjct: 594 ------KKLYSLEANSVIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAE 646
Query: 346 A-------PA--------CYALAISPDSKSPFFSSHHYKSCVKVWDISQ 379
A PA C +L S D + F S + ++VW I +
Sbjct: 647 AEKADNSGPAATKRKVIYCTSLNWSADGSTLF--SGYTDGVIRVWGIGR 693
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 435 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGT 494
LT + + +S D + S DG + +WDL R+F GHT + S D
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 495 KLWTGGLDNT 504
++ + D T
Sbjct: 486 QIVSASRDRT 495
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 46/210 (21%)
Query: 338 IKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNY 397
+K + + A+A D+ S+ KS + +W +++ V+Q ++
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSII-LWKLTKDDKAYGVAQRRLTGHSHF 432
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLAS--PTPRIKAELTSSAPACYAL---------- 445
+ V L DG+ + G L +WDLA+ T R ++L
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 446 -------------------------------AISPDSK--VCFSCCSDGNIAVWDLHNQT 472
SP++ S D + VW+L N
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 473 LVRQFQGHTDGASCIDISADGTKLWTGGLD 502
L GHT S + +S DG+ +GG D
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/352 (21%), Positives = 136/352 (38%), Gaps = 45/352 (12%)
Query: 82 DGQMQPVPFPPDALIGPGIPRHARQINTLSHG-EVVCAVTISNPTKYVYTGGKGCVKVWD 140
D ++ V +AL G + + R + HG +V+C + + V + G V VWD
Sbjct: 36 DVELHQVAERVEAL-GQFVMKTRRTLK--GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD 92
Query: 141 ISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLA-------SPTP 193
S +K + C ++ + P G + GG + S++ L +
Sbjct: 93 -SFTTNKEHAVTMPC----TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK 147
Query: 194 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 253
+ A T+ AC + + + DG A+WD+ + L++ F GH C+D+
Sbjct: 148 KSVAMHTNYLSAC---SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDL 204
Query: 254 --SADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKL 310
S G +GG D WD+R G CV+ ++ + + SV+
Sbjct: 205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD----------------VNSVRY 248
Query: 311 LPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKS 370
P G G + + ++DL + S ++ S + F + Y
Sbjct: 249 YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT- 307
Query: 371 CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIW 422
+ VWD+ + GS+ + +N + ++++ PDG G L +W
Sbjct: 308 -INVWDVLK-GSRVSI----LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/297 (19%), Positives = 99/297 (33%), Gaps = 26/297 (8%)
Query: 213 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISA-----DGTKLWTGGLDN 267
D + S DG + VWD + H C + A G + GGLDN
Sbjct: 74 KDKRRIVSSSQDGKVIVWDSFTTN-----KEHAVTMPCTWVMACAYAPSGCAIACGGLDN 128
Query: 268 TVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLS 327
+ L + NY+ + ++ +
Sbjct: 129 KCSVYPL---------TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 179
Query: 328 IWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVS 387
+WD+ S ++ L ++P F S VWD+ S V
Sbjct: 180 LWDVESG--QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR---SGQCVQ 234
Query: 388 QLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAI 447
+ + D + SV+ P G G + + ++DL + S ++
Sbjct: 235 AFETHESD--VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF 292
Query: 448 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
S ++ F+ +D I VWD+ + V GH + S + +S DGT +G D+T
Sbjct: 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 112/300 (37%), Gaps = 30/300 (10%)
Query: 187 DLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 246
+ P +K L A ++ SP+ + S +D I +W ++ + GH
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 247 GASCIDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYI 305
G S + S+D L + D T++ WD+ G C+K NY+
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYV 113
Query: 306 RSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSS 365
P ++ G ++ IWD+ T + L + + A+ + D S
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVS 169
Query: 366 HHYKSCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWD 423
Y ++WD + L L D+ + VK P+G+ ++ + L +WD
Sbjct: 170 SSYDGLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 424 LASPTPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ + C +A K S D + +W+L + +V++ QGHTD
Sbjct: 224 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 113/295 (38%), Gaps = 30/295 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 147 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 189
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 190 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 243
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKV 453
G IV G NL IW+L T I +L + A P +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENI 296
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 71
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 72 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 115
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 163
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 83/228 (36%), Gaps = 34/228 (14%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 92 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 140
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 246
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISP 356
G IV G NL IW+L T I +L + A P
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHP 292
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 9/173 (5%)
Query: 330 DLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQL 389
+ P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG- 66
Query: 390 DCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISP 449
I V D L+ + L IWD++S + L + + +P
Sbjct: 67 ----HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNP 120
Query: 450 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S + S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 33/82 (40%)
Query: 423 DLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ P +K L A ++ SP+ + S +D I +W ++ + GH
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 483 GASCIDISADGTKLWTGGLDNT 504
G S + S+D L + D T
Sbjct: 70 GISDVAWSSDSNLLVSASDDKT 91
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 112/300 (37%), Gaps = 30/300 (10%)
Query: 187 DLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 246
+ P +K L A ++ SP+ + S +D I +W ++ + GH
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 247 GASCIDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYI 305
G S + S+D L + D T++ WD+ G C+K NY+
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYV 113
Query: 306 RSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSS 365
P ++ G ++ IWD+ T + L + + A+ + D S
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVS 169
Query: 366 HHYKSCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWD 423
Y ++WD + L L D+ + VK P+G+ ++ + L +WD
Sbjct: 170 SSYDGLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 424 LASPTPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ + C +A K S D + +W+L + +V++ QGHTD
Sbjct: 224 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 121/320 (37%), Gaps = 39/320 (12%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 147 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 189
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 190 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 243
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENI----- 296
Query: 459 SDGNIAVWDLHNQTLVRQFQ 478
IA L N ++ F+
Sbjct: 297 ----IASAALENDKTIKLFK 312
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 71
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 72 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 115
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 163
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 83/228 (36%), Gaps = 34/228 (14%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 92 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 140
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 246
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISP 356
G IV G NL IW+L T I +L + A P
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHP 292
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 9/173 (5%)
Query: 330 DLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQL 389
+ P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG- 66
Query: 390 DCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISP 449
I V D L+ + L IWD++S + L + + +P
Sbjct: 67 ----HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNP 120
Query: 450 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S + S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 33/82 (40%)
Query: 423 DLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ P +K L A ++ SP+ + S +D I +W ++ + GH
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 483 GASCIDISADGTKLWTGGLDNT 504
G S + S+D L + D T
Sbjct: 70 GISDVAWSSDSNLLVSASDDKT 91
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 147 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 189
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 190 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 243
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P + S
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 302 LENDKTIKLW 311
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 112/300 (37%), Gaps = 30/300 (10%)
Query: 187 DLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 246
+ P +K L A ++ SP+ + + +D I +W ++ + GH
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 247 GASCIDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYI 305
G S + S+D L + D T++ WD+ G C+K NY+
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYV 113
Query: 306 RSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSS 365
P ++ G ++ IWD+ T + L + + A+ + D S
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVS 169
Query: 366 HHYKSCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWD 423
Y ++WD + L L D+ + VK P+G+ ++ + L +WD
Sbjct: 170 SSYDGLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 424 LASPTPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ + C +A K S D + +W+L + +V++ QGHTD
Sbjct: 224 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 100/280 (35%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L D ++ W +G ++ + G K +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGI 71
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 72 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 115
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 163
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 34/247 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 92 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 140
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 246
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY 368
G IV G NL IW+L T I +L + A P ++
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 369 KSCVKVW 375
+K+W
Sbjct: 305 DKTIKLW 311
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 9/165 (5%)
Query: 330 DLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQL 389
+ P +K L A ++ SP+ + + ++ +K+W + +S
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLAASSADKLIKIWGAYDGKFEKTISG- 66
Query: 390 DCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISP 449
I V D L+ + L IWD++S + L + + +P
Sbjct: 67 ----HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNP 120
Query: 450 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGT 494
S + S D ++ +WD+ ++ H+D S + + DG+
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 165
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 33/82 (40%)
Query: 423 DLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ P +K L A ++ SP+ + + +D I +W ++ + GH
Sbjct: 10 EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 483 GASCIDISADGTKLWTGGLDNT 504
G S + S+D L + D T
Sbjct: 70 GISDVAWSSDSNLLVSASDDKT 91
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 120
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ T + L + + A+ + D S Y
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYD 176
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ + L +WD +
Sbjct: 177 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 231 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 150 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 192
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 193 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 246
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P + S
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 305 LENDKTIKLW 314
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 74
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 75 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 118
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 166
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 34/247 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 95 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 143
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 249
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY 368
G IV G NL IW+L T I +L + A P ++
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 307
Query: 369 KSCVKVW 375
+K+W
Sbjct: 308 DKTIKLW 314
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG----- 69
Query: 394 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKV 453
I V D L+ + L IWD++S + L + + +P S +
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 454 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 427 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 486
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 487 IDISADGTKLWTGGLDNT 504
+ S+D L + D T
Sbjct: 77 VAWSSDSNLLVSASDDKT 94
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 120
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ T + L + + A+ + D S Y
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYD 176
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ + L +WD +
Sbjct: 177 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 231 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 150 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 192
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 193 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 246
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P + S
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 305 LENDKTIKLW 314
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 74
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 75 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 118
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 166
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 34/247 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 95 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 143
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 249
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY 368
G IV G NL IW+L T I +L + A P ++
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 307
Query: 369 KSCVKVW 375
+K+W
Sbjct: 308 DKTIKLW 314
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG----- 69
Query: 394 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKV 453
I V D L+ + L IWD++S + L + + +P S +
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 454 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 427 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 486
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 487 IDISADGTKLWTGGLDNT 504
+ S+D L + D T
Sbjct: 77 VAWSSDSNLLVSASDDKT 94
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 101 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 160
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 161 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 203
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 204 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 257
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P + S
Sbjct: 258 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 316 LENDKTIKLW 325
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 87
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 88 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 131
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ T + L + + A+ + D S Y
Sbjct: 132 FNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYD 187
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ + L +WD +
Sbjct: 188 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 241
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 242 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 297
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 85
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 86 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 129
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 130 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 177
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 178 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 34/247 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 106 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 154
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 214
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 215 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 260
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY 368
G IV G NL IW+L T I +L + A P ++
Sbjct: 261 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 318
Query: 369 KSCVKVW 375
+K+W
Sbjct: 319 DKTIKLW 325
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG----- 80
Query: 394 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKV 453
I V D L+ + L IWD++S + L + + +P S +
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 138
Query: 454 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 187
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 101 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 427 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 486
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 87
Query: 487 IDISADGTKLWTGGLDNT 504
+ S+D L + D T
Sbjct: 88 VAWSSDSNLLVSASDDKT 105
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 120
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ T + L + + A+ + D S Y
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYD 176
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ + L +WD +
Sbjct: 177 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 231 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 150 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 192
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 193 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 246
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P + S
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 305 LENDKTIKLW 314
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 74
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 75 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 118
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 166
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 34/247 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 95 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 143
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 249
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY 368
G IV G NL IW+L T I +L + A P ++
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 307
Query: 369 KSCVKVW 375
+K+W
Sbjct: 308 DKTIKLW 314
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG----- 69
Query: 394 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKV 453
I V D L+ + L IWD++S + L + + +P S +
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 454 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 427 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 486
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 487 IDISADGTKLWTGGLDNT 504
+ S+D L + D T
Sbjct: 77 VAWSSDSNLLVSASDDKT 94
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 80 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 139
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 140 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 182
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 183 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 236
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P + S
Sbjct: 237 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 295 LENDKTIKLW 304
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 66
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 67 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 110
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ T + L + + A+ + D S Y
Sbjct: 111 FNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYD 166
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ + L +WD +
Sbjct: 167 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 220
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 221 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 276
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 64
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 65 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 108
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 109 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 156
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 157 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 34/247 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 85 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 133
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 193
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 194 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 239
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY 368
G IV G NL IW+L T I +L + A P ++
Sbjct: 240 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 297
Query: 369 KSCVKVW 375
+K+W
Sbjct: 298 DKTIKLW 304
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 80 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG----- 59
Query: 394 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKV 453
I V D L+ + L IWD++S + L + + +P S +
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 117
Query: 454 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 166
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 427 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 486
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 66
Query: 487 IDISADGTKLWTGGLDNT 504
+ S+D L + D T
Sbjct: 67 VAWSSDSNLLVSASDDKT 84
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 50/260 (19%)
Query: 224 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVKVW 282
D I V+D N+ + Q GH G + A G L +G D TVR WD+++G C V+
Sbjct: 141 DKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVF 199
Query: 283 DISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAEL 342
+ G + V LD ++ N + ++ G + L +W L P+ +
Sbjct: 200 E----GHNSTVRCLDIVEYKNI----------KYIVTGSRDNTLHVWKL----PKESSVP 241
Query: 343 TSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 402
Y L ++P+F + L+ ++ SV+
Sbjct: 242 DHGEEHDYPLVFHTPEENPYF-------------------------VGVLR--GHMASVR 274
Query: 403 LLPDGRTLIVGGEASN-LSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 461
+ ++V G N L +WD+A + L+ Y+ + K C S D
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 462 NIAVWDLHNQTLVRQFQGHT 481
I +WDL N L+ QGHT
Sbjct: 333 TIRIWDLENGELMYTLQGHT 352
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 161 YIRSVKLLPDGRTLIVGGEASN-LSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCF 219
++ SV+ + ++V G N L +WD+A + L+ Y+ + K C
Sbjct: 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM--KCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 220 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
S D I +WDL N L+ QGHT + +S L + D ++R WD
Sbjct: 327 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWD 378
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 151 SQLDCLQ-RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYAL 209
S + CLQ DNY+ I G + + ++D S + +L+ +AL
Sbjct: 123 SVITCLQFEDNYV------------ITGADDKMIRVYD--SINKKFLLQLSGHDGGVWAL 168
Query: 210 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI--SADGTKLWTGGLDN 267
+ + S +D + VWD+ F+GH C+DI + + TG DN
Sbjct: 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 268 TVRSWDL 274
T+ W L
Sbjct: 228 TLHVWKL 234
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 18/121 (14%)
Query: 387 SQLDCLQ-RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYAL 445
S + CLQ DNY+ I G + + ++D S + +L+ +AL
Sbjct: 123 SVITCLQFEDNYV------------ITGADDKMIRVYD--SINKKFLLQLSGHDGGVWAL 168
Query: 446 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI--SADGTKLWTGGLDN 503
+ + S +D + VWD+ F+GH C+DI + + TG DN
Sbjct: 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 504 T 504
T
Sbjct: 228 T 228
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 75
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 76 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 119
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ T + L + + A+ + D S Y
Sbjct: 120 FNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYD 175
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ + L +WD +
Sbjct: 176 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 229
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 230 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 285
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 89 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 148
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 149 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 191
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 192 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 245
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P + S
Sbjct: 246 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 303
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 304 LENDKTIKLW 313
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 73
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 74 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 117
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 118 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 165
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 166 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 34/247 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 94 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 142
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 202
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 203 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 248
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY 368
G IV G NL IW+L T I +L + A P ++
Sbjct: 249 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 306
Query: 369 KSCVKVW 375
+K+W
Sbjct: 307 DKTIKLW 313
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG----- 68
Query: 394 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKV 453
I V D L+ + L IWD++S + L + + +P S +
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 126
Query: 454 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 175
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 89 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 427 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 486
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 75
Query: 487 IDISADGTKLWTGGLDNT 504
+ S+D L + D T
Sbjct: 76 VAWSSDSNLLVSASDDKT 93
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 69
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 113
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ T + L + + A+ + D S Y
Sbjct: 114 FNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYD 169
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ + L +WD +
Sbjct: 170 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 223
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 224 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 279
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 83 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 142
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 143 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 185
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 186 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 239
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P + S
Sbjct: 240 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 298 LENDKTIKLW 307
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 67
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 68 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 111
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 112 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 159
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 160 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 34/247 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 88 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 136
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 196
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 197 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 242
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY 368
G IV G NL IW+L T I +L + A P ++
Sbjct: 243 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 300
Query: 369 KSCVKVW 375
+K+W
Sbjct: 301 DKTIKLW 307
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG----- 62
Query: 394 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKV 453
I V D L+ + L IWD++S + L + + +P S +
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 120
Query: 454 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 169
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 83 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 427 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 486
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 69
Query: 487 IDISADGTKLWTGGLDNT 504
+ S+D L + D T
Sbjct: 70 VAWSSDSNLLVSASDDKT 87
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 120/311 (38%), Gaps = 25/311 (8%)
Query: 194 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 253
R + L YA+ DS++ S DG + +WD + V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 254 SADGTKLWTGGLDNTVRSWDL--REGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL 311
+ G + GGLDN ++L REG V+V S+ Y+ + L
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRV-------SRELAGHT------GYLSCCRFL 152
Query: 312 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSC 371
D + + G+ + ++WD+ + T +L+++PD++ F S +
Sbjct: 153 DDNQIVTSSGDTT-CALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTR--LFVSGACDAS 207
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 431
K+WD+ + + + ++ I ++ P+G G + + ++DL + +
Sbjct: 208 AKLWDVREGMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 432 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISA 491
+ +++ S ++ + D N VWD GH + SC+ ++
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
Query: 492 DGTKLWTGGLD 502
DG + TG D
Sbjct: 323 DGMAVATGSWD 333
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 22/173 (12%)
Query: 161 YIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFS 220
Y+ + L D + + G+ + ++WD+ + T +L+++PD+++ S
Sbjct: 145 YLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 221 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVK 280
D + +WD+ + F GH + I +G TG D T R +DLR
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD--- 258
Query: 281 VWDISQPGSKTPVSQLDCLQRDNY---IRSVKLLPDGRTLIVGGEASNLSIWD 330
+L DN I SV GR L+ G + N ++WD
Sbjct: 259 -------------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/163 (17%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Query: 112 HGEVVCAVTISNPTKYVYTGG-KGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPD 170
H V +++++ T+ +G K+WD+ + + + ++ I ++ P+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-----HESDINAICFFPN 237
Query: 171 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 230
G G + + ++DL + + + +++ S ++ + D N VW
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 231 DLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
D GH + SC+ ++ DG + TG D+ ++ W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/271 (19%), Positives = 100/271 (36%), Gaps = 31/271 (11%)
Query: 158 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP--TPRIKAELTSSAPACYALAISPDS 215
R +++ + P G + GG + SI++L + R+ EL D+
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 216 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLR 275
++ S D A+WD+ F GHT + ++ D +G D + + WD+R
Sbjct: 156 QIVTSS-GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 276 EGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPT 335
EG + + G ++ I ++ P+G G + + ++DL
Sbjct: 215 EGMCRQ---TFTGHESD------------INAICFFPNGNAFATGSDDATCRLFDL---- 255
Query: 336 PRIKAELTSSAP---ACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCL 392
R EL + + C ++S + + VWD + ++
Sbjct: 256 -RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---- 310
Query: 393 QRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 423
DN + + + DG + G S L IW+
Sbjct: 311 -HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 8/193 (4%)
Query: 312 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSC 371
D R L+ + L IWD + L SS A A S + + + +
Sbjct: 65 TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN----YVACGGLDNI 120
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 431
++++ VS+ + Y+ + L D + + G+ + ++WD+ +
Sbjct: 121 CSIYNLKTREGNVRVSR-ELAGHTGYLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQ-- 176
Query: 432 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISA 491
T +L+++PD+++ S D + +WD+ + F GH + I
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 492 DGTKLWTGGLDNT 504
+G TG D T
Sbjct: 237 NGNAFATGSDDAT 249
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 92
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 136
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ T + L + + A+ + D S Y
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYD 192
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ + L +WD +
Sbjct: 193 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 246
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 247 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 106 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 165
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 166 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 208
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 209 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 262
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P + S
Sbjct: 263 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 321 LENDKTIKLW 330
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 90
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 91 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 134
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 135 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 182
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 34/247 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 111 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 159
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 265
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY 368
G IV G NL IW+L T I +L + A P ++
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 323
Query: 369 KSCVKVW 375
+K+W
Sbjct: 324 DKTIKLW 330
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 106 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG----- 85
Query: 394 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKV 453
I V D L+ + L IWD++S + L + + +P S +
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 143
Query: 454 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 427 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 486
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 92
Query: 487 IDISADGTKLWTGGLDNT 504
+ S+D L + D T
Sbjct: 93 VAWSSDSNLLVSASDDKT 110
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 94
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 95 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 138
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ T + L + + A+ + D S Y
Sbjct: 139 FNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYD 194
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ + L +WD +
Sbjct: 195 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 248
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 249 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 304
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 108 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 167
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 168 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 210
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 211 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 264
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P + S
Sbjct: 265 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 323 LENDKTIKLW 332
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 92
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 93 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 136
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 137 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 184
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 185 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 34/247 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 113 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 161
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 221
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 222 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 267
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY 368
G IV G NL IW+L T I +L + A P ++
Sbjct: 268 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 325
Query: 369 KSCVKVW 375
+K+W
Sbjct: 326 DKTIKLW 332
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 108 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG----- 87
Query: 394 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKV 453
I V D L+ + L IWD++S + L + + +P S +
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 145
Query: 454 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 194
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 427 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 486
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 94
Query: 487 IDISADGTKLWTGGLDNT 504
+ S+D L + D T
Sbjct: 95 VAWSSDSNLLVSASDDKT 112
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 120/311 (38%), Gaps = 25/311 (8%)
Query: 194 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 253
R + L YA+ DS++ S DG + +WD + V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 254 SADGTKLWTGGLDNTVRSWDL--REGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL 311
+ G + GGLDN ++L REG V+V S+ Y+ + L
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRV-------SRELAGHT------GYLSCCRFL 152
Query: 312 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSC 371
D + + G+ + ++WD+ + T +L+++PD++ F S +
Sbjct: 153 DDNQIVTSSGDTT-CALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTR--LFVSGACDAS 207
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 431
K+WD+ + + + ++ I ++ P+G G + + ++DL + +
Sbjct: 208 AKLWDVREGMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 432 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISA 491
+ +++ S ++ + D N VWD GH + SC+ ++
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
Query: 492 DGTKLWTGGLD 502
DG + TG D
Sbjct: 323 DGMAVATGSWD 333
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 22/173 (12%)
Query: 161 YIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFS 220
Y+ + L D + + G+ + ++WD+ + T +L+++PD+++ S
Sbjct: 145 YLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 221 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVK 280
D + +WD+ + F GH + I +G TG D T R +DLR
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD--- 258
Query: 281 VWDISQPGSKTPVSQLDCLQRDNY---IRSVKLLPDGRTLIVGGEASNLSIWD 330
+L DN I SV GR L+ G + N ++WD
Sbjct: 259 -------------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/163 (17%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Query: 112 HGEVVCAVTISNPTKYVYTGG-KGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPD 170
H V +++++ T+ +G K+WD+ + + + ++ I ++ P+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-----HESDINAICFFPN 237
Query: 171 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 230
G G + + ++DL + + + +++ S ++ + D N VW
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 231 DLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
D GH + SC+ ++ DG + TG D+ ++ W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/271 (19%), Positives = 100/271 (36%), Gaps = 31/271 (11%)
Query: 158 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP--TPRIKAELTSSAPACYALAISPDS 215
R +++ + P G + GG + SI++L + R+ EL D+
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 216 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLR 275
++ S D A+WD+ F GHT + ++ D +G D + + WD+R
Sbjct: 156 QIVTSS-GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 276 EGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPT 335
EG + + G ++ I ++ P+G G + + ++DL
Sbjct: 215 EGMCRQ---TFTGHESD------------INAICFFPNGNAFATGSDDATCRLFDL---- 255
Query: 336 PRIKAELTSSAP---ACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCL 392
R EL + + C ++S + + VWD + ++
Sbjct: 256 -RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---- 310
Query: 393 QRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 423
DN + + + DG + G S L IW+
Sbjct: 311 -HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 8/193 (4%)
Query: 312 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSC 371
D R L+ + L IWD + L SS A A S + + + +
Sbjct: 65 TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN----YVACGGLDNI 120
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 431
++++ VS+ + Y+ + L D + + G+ + ++WD+ +
Sbjct: 121 CSIYNLKTREGNVRVSR-ELAGHTGYLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQ-- 176
Query: 432 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISA 491
T +L+++PD+++ S D + +WD+ + F GH + I
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 492 DGTKLWTGGLDNT 504
+G TG D T
Sbjct: 237 NGNAFATGSDDAT 249
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 114
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ T + L + + A+ + D S Y
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYD 170
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ + L +WD +
Sbjct: 171 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 225 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 280
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 144 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 186
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 187 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 240
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P + S
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 299 LENDKTIKLW 308
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 68
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 69 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 112
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 113 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 160
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 34/247 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 89 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 137
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 243
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY 368
G IV G NL IW+L T I +L + A P ++
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 301
Query: 369 KSCVKVW 375
+K+W
Sbjct: 302 DKTIKLW 308
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG----- 63
Query: 394 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKV 453
I V D L+ + L IWD++S + L + + +P S +
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 454 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 427 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 486
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 487 IDISADGTKLWTGGLDNT 504
+ S+D L + D T
Sbjct: 71 VAWSSDSNLLVSASDDKT 88
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 71
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 72 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 115
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ T + L + + A+ + D S Y
Sbjct: 116 FNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYD 171
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ + L +WD +
Sbjct: 172 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 225
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 226 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 281
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 85 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 144
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 145 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 187
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 188 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 241
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P + S
Sbjct: 242 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 300 LENDKTIKLW 309
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 69
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 70 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 113
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 114 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 161
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 162 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 34/247 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 90 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 138
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 198
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 199 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 244
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY 368
G IV G NL IW+L T I +L + A P ++
Sbjct: 245 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 302
Query: 369 KSCVKVW 375
+K+W
Sbjct: 303 DKTIKLW 309
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 85 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG----- 64
Query: 394 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKV 453
I V D L+ + L IWD++S + L + + +P S +
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 122
Query: 454 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 171
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 427 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 486
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 71
Query: 487 IDISADGTKLWTGGLDNT 504
+ S+D L + D T
Sbjct: 72 VAWSSDSNLLVSASDDKT 89
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 144 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 186
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNYIR 399
+ P + SP+ K + + + +K+WD S+ KT + + Y
Sbjct: 187 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 240
Query: 400 SVKLLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
G IV G NL IW+L T I +L + A P + S
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 299 LENDKTIKLW 308
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 114
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ T + L + + A+ + D S Y
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRD--GSLIVSSSYD 170
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ + L +WD +
Sbjct: 171 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 225 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 280
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 101/280 (36%), Gaps = 42/280 (15%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 68
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 69 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 112
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDI-------SQPGSKTPVSQLDCLQRDNYIRSVKLLPD 406
+ + +S S + V++WD+ + P PVS +V D
Sbjct: 113 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS------------AVHFNRD 160
Query: 407 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
G ++ IWD AS +K + P + SP+ K + D + +W
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 467 DLHNQTLVRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
D ++ + GH + CI + S G K + +G DN
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 34/247 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 89 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 137
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T + L + + A+ + D + S DG +WD + Q L S
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K + Y
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK----------NEKYCIFAN 243
Query: 310 LLPDGRTLIVGGEASNL-SIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY 368
G IV G NL IW+L T I +L + A P ++
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 301
Query: 369 KSCVKVW 375
+K+W
Sbjct: 302 DKTIKLW 308
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
P +K L A ++ SP+ + + +S +K+W + +S
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISG----- 63
Query: 394 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKV 453
I V D L+ + L IWD++S + L + + +P S +
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 454 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S D ++ +WD+ ++ H+D S + + DG+ + + D
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 427 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 486
P +K L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 487 IDISADGTKLWTGGLDNT 504
+ S+D L + D T
Sbjct: 71 VAWSSDSNLLVSASDDKT 88
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 120/311 (38%), Gaps = 25/311 (8%)
Query: 194 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 253
R + L YA+ DS++ S DG + +WD + V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 254 SADGTKLWTGGLDNTVRSWDL--REGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL 311
+ G + GGLDN ++L REG V+V S+ Y+ + L
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRV-------SRELAGHT------GYLSCCRFL 152
Query: 312 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSC 371
D + + G+ + ++WD+ + T +L+++PD++ F S +
Sbjct: 153 DDNQIVTSSGDTT-CALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTR--LFVSGACDAS 207
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 431
K+WD+ + + + ++ I ++ P+G G + + ++DL + +
Sbjct: 208 AKLWDVREGMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 432 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISA 491
+ +++ S ++ + D N VWD GH + SC+ ++
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
Query: 492 DGTKLWTGGLD 502
DG + TG D
Sbjct: 323 DGMAVATGSWD 333
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 22/173 (12%)
Query: 161 YIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFS 220
Y+ + L D + + G+ + ++WD+ + T +L+++PD+++ S
Sbjct: 145 YLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 221 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVK 280
D + +WD+ + F GH + I +G TG D T R +DLR
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD--- 258
Query: 281 VWDISQPGSKTPVSQLDCLQRDNY---IRSVKLLPDGRTLIVGGEASNLSIWD 330
+L DN I SV GR L+ G + N ++WD
Sbjct: 259 -------------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/163 (17%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Query: 112 HGEVVCAVTISNPTKYVYTGG-KGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPD 170
H V +++++ T+ +G K+WD+ + + + ++ I ++ P+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-----HESDINAICFFPN 237
Query: 171 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 230
G G + + ++DL + + + +++ S ++ + D N VW
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 231 DLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
D GH + SC+ ++ DG + TG D+ ++ W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/271 (19%), Positives = 100/271 (36%), Gaps = 31/271 (11%)
Query: 158 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP--TPRIKAELTSSAPACYALAISPDS 215
R +++ + P G + GG + SI++L + R+ EL D+
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 216 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLR 275
++ S D A+WD+ F GHT + ++ D +G D + + WD+R
Sbjct: 156 QIVTSS-GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 276 EGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPT 335
EG + + G ++ I ++ P+G G + + ++DL
Sbjct: 215 EGMCRQ---TFTGHESD------------INAICFFPNGNAFATGSDDATCRLFDL---- 255
Query: 336 PRIKAELTSSAP---ACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCL 392
R EL + + C ++S + + VWD + ++
Sbjct: 256 -RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---- 310
Query: 393 QRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 423
DN + + + DG + G S L IW+
Sbjct: 311 -HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 8/193 (4%)
Query: 312 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSC 371
D R L+ + L IWD + L SS A A S + + + +
Sbjct: 65 TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN----YVACGGLDNI 120
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 431
++++ VS+ + Y+ + L D + + G+ + ++WD+ +
Sbjct: 121 CSIYNLKTREGNVRVSR-ELAGHTGYLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQ-- 176
Query: 432 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISA 491
T +L+++PD+++ S D + +WD+ + F GH + I
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 492 DGTKLWTGGLDNT 504
+G TG D T
Sbjct: 237 NGNAFATGSDDAT 249
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 120/311 (38%), Gaps = 25/311 (8%)
Query: 194 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 253
R + L YA+ DS++ S DG + +WD + V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 254 SADGTKLWTGGLDNTVRSWDL--REGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL 311
+ G + GGLDN ++L REG V+V S+ Y+ + L
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRV-------SRELAGHT------GYLSCCRFL 152
Query: 312 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSC 371
D + + G+ + ++WD+ + T +L+++PD++ F S +
Sbjct: 153 DDNQIVTSSGDTT-CALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTR--LFVSGACDAS 207
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 431
K+WD+ + + + ++ I ++ P+G G + + ++DL + +
Sbjct: 208 AKLWDVREGMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262
Query: 432 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISA 491
+ +++ S ++ + D N VWD GH + SC+ ++
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
Query: 492 DGTKLWTGGLD 502
DG + TG D
Sbjct: 323 DGMAVATGSWD 333
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 22/173 (12%)
Query: 161 YIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFS 220
Y+ + L D + + G+ + ++WD+ + T +L+++PD+++ S
Sbjct: 145 YLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 221 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVK 280
D + +WD+ + F GH + I +G TG D T R +DLR
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD--- 258
Query: 281 VWDISQPGSKTPVSQLDCLQRDNY---IRSVKLLPDGRTLIVGGEASNLSIWD 330
+L DN I SV GR L+ G + N ++WD
Sbjct: 259 -------------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/163 (17%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Query: 112 HGEVVCAVTISNPTKYVYTGG-KGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPD 170
H V +++++ T+ +G K+WD+ + + + ++ I ++ P+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-----HESDINAICFFPN 237
Query: 171 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 230
G G + + ++DL + + + +++ S ++ + D N VW
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 231 DLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
D GH + SC+ ++ DG + TG D+ ++ W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/271 (19%), Positives = 100/271 (36%), Gaps = 31/271 (11%)
Query: 158 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP--TPRIKAELTSSAPACYALAISPDS 215
R +++ + P G + GG + SI++L + R+ EL D+
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 216 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLR 275
++ S D A+WD+ F GHT + ++ D +G D + + WD+R
Sbjct: 156 QIVTSS-GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 276 EGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPT 335
EG + + G ++ I ++ P+G G + + ++DL
Sbjct: 215 EGMCRQ---TFTGHESD------------INAICFFPNGNAFATGSDDATCRLFDL---- 255
Query: 336 PRIKAELTSSAP---ACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCL 392
R EL + + C ++S + + VWD + ++
Sbjct: 256 -RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---- 310
Query: 393 QRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 423
DN + + + DG + G S L IW+
Sbjct: 311 -HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 8/193 (4%)
Query: 312 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSC 371
D R L+ + L IWD + L SS A A S + + + +
Sbjct: 65 TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN----YVACGGLDNI 120
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 431
++++ VS+ + Y+ + L D + + G+ + ++WD+ +
Sbjct: 121 CSIYNLKTREGNVRVSR-ELAGHTGYLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQ-- 176
Query: 432 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISA 491
T +L+++PD+++ S D + +WD+ + F GH + I
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 492 DGTKLWTGGLDNT 504
+G TG D T
Sbjct: 237 NGNAFATGSDDAT 249
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 120/311 (38%), Gaps = 25/311 (8%)
Query: 194 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 253
R + L YA+ DS++ S DG + +WD + V +
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 116
Query: 254 SADGTKLWTGGLDNTVRSWDL--REGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL 311
+ G + GGLDN ++L REG V+V S+ Y+ + L
Sbjct: 117 APSGNYVACGGLDNICSIYNLKTREGNVRV-------SRELAGHT------GYLSCCRFL 163
Query: 312 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSC 371
D + + G+ + ++WD+ + T +L+++PD++ F S +
Sbjct: 164 DDNQIVTSSGDTT-CALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTR--LFVSGACDAS 218
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 431
K+WD+ + + + ++ I ++ P+G G + + ++DL + +
Sbjct: 219 AKLWDVREGMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 273
Query: 432 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISA 491
+ +++ S ++ + D N VWD GH + SC+ ++
Sbjct: 274 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 333
Query: 492 DGTKLWTGGLD 502
DG + TG D
Sbjct: 334 DGMAVATGSWD 344
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 22/173 (12%)
Query: 161 YIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFS 220
Y+ + L D + + G+ + ++WD+ + T +L+++PD+++ S
Sbjct: 156 YLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVS 212
Query: 221 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVK 280
D + +WD+ + F GH + I +G TG D T R +DLR
Sbjct: 213 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD--- 269
Query: 281 VWDISQPGSKTPVSQLDCLQRDNY---IRSVKLLPDGRTLIVGGEASNLSIWD 330
+L DN I SV GR L+ G + N ++WD
Sbjct: 270 -------------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 309
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/163 (17%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Query: 112 HGEVVCAVTISNPTKYVYTGG-KGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPD 170
H V +++++ T+ +G K+WD+ + + + ++ I ++ P+
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-----HESDINAICFFPN 248
Query: 171 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 230
G G + + ++DL + + + +++ S ++ + D N VW
Sbjct: 249 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 308
Query: 231 DLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
D GH + SC+ ++ DG + TG D+ ++ W+
Sbjct: 309 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/271 (19%), Positives = 100/271 (36%), Gaps = 31/271 (11%)
Query: 158 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP--TPRIKAELTSSAPACYALAISPDS 215
R +++ + P G + GG + SI++L + R+ EL D+
Sbjct: 107 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 166
Query: 216 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLR 275
++ S D A+WD+ F GHT + ++ D +G D + + WD+R
Sbjct: 167 QIVTSS-GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 276 EGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPT 335
EG + + G ++ I ++ P+G G + + ++DL
Sbjct: 226 EGMCRQ---TFTGHESD------------INAICFFPNGNAFATGSDDATCRLFDL---- 266
Query: 336 PRIKAELTSSAP---ACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCL 392
R EL + + C ++S + + VWD + ++
Sbjct: 267 -RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---- 321
Query: 393 QRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 423
DN + + + DG + G S L IW+
Sbjct: 322 -HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 8/193 (4%)
Query: 312 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSC 371
D R L+ + L IWD + L SS A A S + + + +
Sbjct: 76 TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN----YVACGGLDNI 131
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 431
++++ VS+ + Y+ + L D + + G+ + ++WD+ +
Sbjct: 132 CSIYNLKTREGNVRVSR-ELAGHTGYLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQ-- 187
Query: 432 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISA 491
T +L+++PD+++ S D + +WD+ + F GH + I
Sbjct: 188 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 247
Query: 492 DGTKLWTGGLDNT 504
+G TG D T
Sbjct: 248 NGNAFATGSDDAT 260
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 50/260 (19%)
Query: 224 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVKVW 282
D I V+D N+ + Q GH G + A G L +G D TVR WD+++G C V+
Sbjct: 141 DKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVF 199
Query: 283 DISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAEL 342
+ G + V LD ++ N + ++ G + L +W L P+ +
Sbjct: 200 E----GHNSTVRCLDIVEYKNI----------KYIVTGSRDNTLHVWKL----PKESSVP 241
Query: 343 TSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 402
Y L ++P+F + L+ + SV+
Sbjct: 242 DHGEEHDYPLVFHTPEENPYF-------------------------VGVLR--GHXASVR 274
Query: 403 LLPDGRTLIVGGEASN-LSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 461
+ ++V G N L +WD+A + L+ Y+ + K C S D
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQ--XKCLYILSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 462 NIAVWDLHNQTLVRQFQGHT 481
I +WDL N L QGHT
Sbjct: 333 TIRIWDLENGELXYTLQGHT 352
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 171 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 230
G ++ G + L +WD+A + L+ Y+ + K C S D I +W
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQX--KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
Query: 231 DLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
DL N L QGHT + +S L + D ++R WD
Sbjct: 338 DLENGELXYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWD 378
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 151 SQLDCLQ-RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYAL 209
S + CLQ DNY+ I G + + ++D S + +L+ +AL
Sbjct: 123 SVITCLQFEDNYV------------ITGADDKXIRVYD--SINKKFLLQLSGHDGGVWAL 168
Query: 210 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI--SADGTKLWTGGLDN 267
+ + S +D + VWD+ F+GH C+DI + + TG DN
Sbjct: 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 268 TVRSWDL 274
T+ W L
Sbjct: 228 TLHVWKL 234
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 18/121 (14%)
Query: 387 SQLDCLQ-RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYAL 445
S + CLQ DNY+ I G + + ++D S + +L+ +AL
Sbjct: 123 SVITCLQFEDNYV------------ITGADDKXIRVYD--SINKKFLLQLSGHDGGVWAL 168
Query: 446 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI--SADGTKLWTGGLDN 503
+ + S +D + VWD+ F+GH C+DI + + TG DN
Sbjct: 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 504 T 504
T
Sbjct: 228 T 228
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 124/310 (40%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 147 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 189
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNY-I 398
+ P + SP+ K + + + +K+WD S+ KT + + Y I
Sbjct: 190 LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGH----KNEKYCI 243
Query: 399 RSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
+ + G+ ++ G E + + IW+L T I +L + A P + S
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 302 LENDKTIKLW 311
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 109/296 (36%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P + L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 117
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ + +K S P A+ + S Y
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMC-LKTLPAHSDPVS---AVHFNRDGSLIVSSSYD 173
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ + L +WD +
Sbjct: 174 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 227
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 228 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 102/273 (37%), Gaps = 28/273 (10%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L+ GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 71
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 72 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 115
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVG 413
+ + +S S + V++WD+ KT + + + +V DG ++
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDV-----KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 414 GEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 473
IWD AS +K + P + SP+ K + D + +WD
Sbjct: 171 SYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 474 VRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
++ + GH + CI + S G K + +G DN
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 94/246 (38%), Gaps = 32/246 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 92 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 140
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T L + + A+ + D + S DG +WD + Q L S
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDNT++ WD +G C+K + G K ++ C+ + +
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TGHK---NEKYCIFANFSVTG-- 251
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
G+ ++ G E + + IW+L T I +L + A P ++
Sbjct: 252 ----GKWIVSGSEDNMVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 370 SCVKVW 375
+K+W
Sbjct: 306 KTIKLW 311
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 124/310 (40%), Gaps = 32/310 (10%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVK 280
D + +WD+ + ++ +GH++ C + + + +G D +VR WD++ G C+K
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ P PVS +V DG ++ IWD AS +K
Sbjct: 147 ----TLPAHSDPVS------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKT 189
Query: 341 ELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS-KTPVSQLDCLQRDNY-I 398
+ P + SP+ K + + + +K+WD S+ KT + + Y I
Sbjct: 190 LIDDDNPPVSFVKFSPNGK--YILAATLDNDLKLWDYSKGKCLKTYTGH----KNEKYCI 243
Query: 399 RSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
+ + G+ ++ G E + + IW+L T I +L + A P + S
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 459 --SDGNIAVW 466
+D I +W
Sbjct: 302 LENDKTIKLW 311
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 110/296 (37%), Gaps = 30/296 (10%)
Query: 191 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 250
P + L A ++ SP+ + S +D I +W ++ + GH G S
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S+D L + D T++ WD+ G C+K NY+
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----------------LKGHSNYVFCCN 117
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
P ++ G ++ IWD+ + +K S P A+ + S Y
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMC-LKTLPAHSDPVS---AVHFNRDGSLIVSSSYD 173
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNY--IRSVKLLPDGRTLIVGGEASNLSIWDLASP 427
++WD + L L D+ + VK P+G+ ++ ++L +WD +
Sbjct: 174 GLCRIWDTASGQC------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG 227
Query: 428 TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
+ C +A K S D + +W+L + +V++ QGHTD
Sbjct: 228 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 103/273 (37%), Gaps = 28/273 (10%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV 293
N L+ GHT S + S +G L + D ++ W +G ++ + G K +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGI 71
Query: 294 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALA 353
S V D L+ + L IWD++S K T + Y
Sbjct: 72 SD------------VAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFC 115
Query: 354 ISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVG 413
+ + +S S + V++WD+ KT + + + +V DG ++
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDV-----KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 414 GEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 473
IWD AS +K + P + SP+ K + D ++ +WD
Sbjct: 171 SYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKC 229
Query: 474 VRQFQGHTDGASCI--DISADGTK-LWTGGLDN 503
++ + GH + CI + S G K + +G DN
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 93/246 (37%), Gaps = 32/246 (13%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQ----RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASP 191
+K+WD+S CL+ NY+ P ++ G ++ IWD+
Sbjct: 92 LKIWDVSSG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--K 140
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASC 250
T L + + A+ + D + S DG +WD + Q L S
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 251 IDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ S +G + LDN ++ WD +G C+K + G K ++ C+ + +
Sbjct: 201 VKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY----TGHK---NEKYCIFANFSVTG-- 251
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
G+ ++ G E + + IW+L T I +L + A P ++
Sbjct: 252 ----GKWIVSGSEDNMVYIWNL--QTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 370 SCVKVW 375
+K+W
Sbjct: 306 KTIKLW 311
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SVK P+G L + IW + + + ++ +A S DS + S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 458 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
D + +WD+ + ++ +GH++ C + + + +G D +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 107/252 (42%), Gaps = 36/252 (14%)
Query: 237 LVRQFQGHTDGASCI----DISADGTKLWTGGLDNTVRSWDLREGCVKV-WDISQPGSKT 291
L +Q Q H D + + + + TG LD+ V+ W R+ + + W S G +
Sbjct: 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW--SLEGHQL 81
Query: 292 PVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEAS---NLSIWDLASPTPRIKAELTSSAPA 348
V +D TL + +S ++ +WDL + +IK+ + +
Sbjct: 82 GVVSVDI---------------SHTLPIAASSSLDAHIRLWDLENG-KQIKS-IDAGPVD 124
Query: 349 CYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGR 408
+ LA SPDS+ +H V ++ G ++ + R +I S+ PDG+
Sbjct: 125 AWTLAFSPDSQYLATGTH-------VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK 177
Query: 409 TLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 468
L G ++I+D+A T ++ L A +L SPDS++ + DG I ++D+
Sbjct: 178 YLASGAIDGIINIFDIA--TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Query: 469 HNQTLVRQFQGH 480
+ L GH
Sbjct: 236 QHANLAGTLSGH 247
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 119/293 (40%), Gaps = 30/293 (10%)
Query: 213 PDSKVCFSCCSDGNIAVWDLHNQTLVRQF--QGHTDGASCIDISADGTKLWTGGLDNTVR 270
+S+ + D + VW ++ L Q+ +GH G +DIS + LD +R
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105
Query: 271 SWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 330
WDL G + +D D + ++ PD + L G ++I+
Sbjct: 106 LWDLENG-------------KQIKSIDAGPVDAW--TLAFSPDSQYLATGTHVGKVNIFG 150
Query: 331 LASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLD 390
+ S + + L + ++A SPD K + +S + ++DI+ L
Sbjct: 151 VESG--KKEYSLDTRGKFILSIAYSPDGK--YLASGAIDGIINIFDIATG------KLLH 200
Query: 391 CLQRDNY-IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISP 449
L+ IRS+ PD + L+ + + I+D+ + L+ A +A P
Sbjct: 201 TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--NLAGTLSGHASWVLNVAFCP 258
Query: 450 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
D S SD ++ VWD+ +T V F H D + + +G+K+ + G D
Sbjct: 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 22/230 (9%)
Query: 102 RHARQINTLSHGEV-VCAVTISNPTKYVYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDN 160
+ +QI ++ G V + S ++Y+ TG V ++ G ++ + R
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATG----THVGKVNIFGVESGKKEYSLDTRGK 165
Query: 161 YIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFS 220
+I S+ PDG+ L G ++I+D+A T ++ L A +L SPDS++ +
Sbjct: 166 FILSIAYSPDGKYLASGAIDGIINIFDIA--TGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 221 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVK 280
DG I ++D+ + L GH + D T + D +V+ WD+
Sbjct: 224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV------ 277
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 330
G++T V + + VK +G ++ G+ + I+D
Sbjct: 278 -------GTRTCVHTF--FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 120/310 (38%), Gaps = 28/310 (9%)
Query: 207 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 266
Y+L +P+ S DG + VW+ + H + +G + GGLD
Sbjct: 70 YSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD 129
Query: 267 NTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRT-LIVGGEASN 325
+ ++L + PVS++ Y S + +PD T LI G
Sbjct: 130 SACSIFNLSSQ-------ADRDGNMPVSRV-LTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 326 LSIWDLASPTPRIKAELTSSAPACY---ALAISPDS-KSPFFSSHHYKSCVKVWDISQPG 381
+WD+ + RI S P+ + L++S +S + F S + V++WD+
Sbjct: 182 CVLWDVTTG-QRISI-FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239
Query: 382 SKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTP-----RIKAELT 436
+ I SVK PDG+ G + ++D+ + R
Sbjct: 240 RAVRTYH----GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND 295
Query: 437 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF----QGHTDGASCIDISAD 492
+ P ++A S ++ F+ S+G+ VWD +V H SC+ +S+D
Sbjct: 296 NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD 355
Query: 493 GTKLWTGGLD 502
G+ L TG D
Sbjct: 356 GSALCTGSWD 365
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 116/311 (37%), Gaps = 43/311 (13%)
Query: 134 GCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTP 193
G + VW+ + KT +L C ++ P+G+++ GG S SI++L+S
Sbjct: 88 GRLIVWN-ALTSQKTHAIKLHC----PWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD 142
Query: 194 R-----IKAELTSSAPACYALAISPDSKV-CFSCCSDGNIAVWDLHNQTLVRQF-----Q 242
R + LT + PD + + D +WD+ + F
Sbjct: 143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS 202
Query: 243 GHTDGASCIDISADGTKLW-TGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQR 301
GHT + I++ ++ +G D TVR WDLR I+ +T
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLR--------ITSRAVRTYHGH------ 248
Query: 302 DNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTP-----RIKAELTSSAPACYALAISP 356
+ I SVK PDG+ G + ++D+ + R + P ++A S
Sbjct: 249 EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308
Query: 357 DSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ--RDNYIRSVKLLPDGRTLIVGG 414
+ F+ + C VWD V L LQ + I + L DG L G
Sbjct: 309 SGR-LLFAGYSNGDCY-VWDTLLA---EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS 363
Query: 415 EASNLSIWDLA 425
NL IW +
Sbjct: 364 WDKNLKIWAFS 374
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 16/210 (7%)
Query: 305 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFS 364
+ S+ P+ ++ + L +W+ + T + + P A +P+ +S +
Sbjct: 69 VYSLDWTPEKNWIVSASQDGRLIVWN--ALTSQKTHAIKLHCPWVMECAFAPNGQS--VA 124
Query: 365 SHHYKSCVKVWDISQPGSK---TPVSQLDCLQRDNYIRSVKLLPDGRT-LIVGGEASNLS 420
S ++++S + PVS++ Y S + +PD T LI G
Sbjct: 125 CGGLDSACSIFNLSSQADRDGNMPVSRV-LTGHKGYASSCQYVPDQETRLITGSGDQTCV 183
Query: 421 IWDLASPTPRIK---AELTSSAPA-CYALAI-SPDSKVCFSCCSDGNIAVWDLH-NQTLV 474
+WD+ + RI +E S A +L+I S ++ + S D + +WDL V
Sbjct: 184 LWDVTTG-QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV 242
Query: 475 RQFQGHTDGASCIDISADGTKLWTGGLDNT 504
R + GH + + DG + TG D T
Sbjct: 243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGT 272
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/354 (21%), Positives = 137/354 (38%), Gaps = 39/354 (11%)
Query: 169 PDGRTLIVGGEASNLSIWDLASPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNI 227
DG +IV + L ++D+ T + AE+ T SP + S +
Sbjct: 815 ADGDKIIVAAKNKVL-LFDI--HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCV 871
Query: 228 AVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGC-------VK 280
+W++ ++ V +GH + S DG+ T D T+R W+ ++ C +
Sbjct: 872 ELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQ 931
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIR----SVKLLPDGRT-----------LIVGGEASN 325
D+ ++T V +D ++ I + LP+ + + G E
Sbjct: 932 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA 991
Query: 326 LSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTP 385
+ I +L P R+ + A + + D K+ SS S ++VW+ Q G
Sbjct: 992 IKIIEL--PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE--DSVIQVWNW-QTGDYVF 1046
Query: 386 VSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYAL 445
+ ++ +LL D R L + + + +W++ T RI+ + T +
Sbjct: 1047 LQ-----AHQETVKDFRLLQDSRLLSWSFDGT-VKVWNVI--TGRIERDFTCHQGTVLSC 1098
Query: 446 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTG 499
AIS D+ S +D +W + + + +GH C S DG L TG
Sbjct: 1099 AISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATG 1152
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 102/255 (40%), Gaps = 32/255 (12%)
Query: 82 DGQMQPVPFPPDALIGPGI--PRHARQINTLSHGEVVCAVTISNPTKYVYTGGKGCVKVW 139
DG ++ + P + + G+ + R I + G+ + + + ++VW
Sbjct: 989 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL-----------ISSSEDSVIQVW 1037
Query: 140 DISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAEL 199
+ Q G + ++ +LL D R L + + + +W++ T RI+ +
Sbjct: 1038 NW-QTGDYVFLQA-----HQETVKDFRLLQDSRLLSWSFDGT-VKVWNVI--TGRIERDF 1088
Query: 200 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTK 259
T + AIS D+ S +D +W + + + +GH C S DG
Sbjct: 1089 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGIL 1148
Query: 260 LWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVS-QLDCLQRDNYIRSVKLLPDGRTLI 318
L TG + +R W++ +G + S P+S + ++ V PD +TL+
Sbjct: 1149 LATGDDNGEIRIWNVSDGQL-------LHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1201
Query: 319 VGGEASNLSIWDLAS 333
G L W++A+
Sbjct: 1202 SAG--GYLKWWNVAT 1214
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 116/311 (37%), Gaps = 33/311 (10%)
Query: 205 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGG 264
A Y S D + SC +D + V+ + + H D C S+D + + T
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS 683
Query: 265 LDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEA 323
D V+ WD G V +D Q++C N +S LL L G
Sbjct: 684 ADKKVKIWDSATGKLVHTYD-------EHSEQVNCCHFTN--KSNHLL-----LATGSND 729
Query: 324 SNLSIWDLASPTPR-IKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS 382
L +WDL R T+S C SPD + +S +++WD+
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHC---RFSPDDE--LLASCSADGTLRLWDVRSANE 784
Query: 383 KTPVS-QLDCLQRDNYIRSVKLL-------PDGRTLIVGGEASNLSIWDLASPTPRIKAE 434
+ ++ + L ++ V+++ DG +IV + L ++D+ T + AE
Sbjct: 785 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDI--HTSGLLAE 841
Query: 435 L-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADG 493
+ T SP + S + +W++ ++ V +GH + S DG
Sbjct: 842 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 901
Query: 494 TKLWTGGLDNT 504
+ T D T
Sbjct: 902 SSFLTASDDQT 912
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/248 (19%), Positives = 85/248 (34%), Gaps = 39/248 (15%)
Query: 244 HTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDN 303
HTD S DG ++ + G D T++ + ++ G K LD ++
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFK-----------AETGEKL----LDIKAHED 665
Query: 304 YIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFF 363
+ D + + IWD S T ++ + + S
Sbjct: 666 EVLCCAFSSDDSYIATCSADKKVKIWD--SATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 364 SSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 423
++ +K+WD++Q + + N + + PD L L +WD
Sbjct: 724 ATGSNDFFLKLWDLNQKECRNTM-----FGHTNSVNHCRFSPDDELLASCSADGTLRLWD 778
Query: 424 LASPTPR-----IKAELTSSAPACYALAISPDSKVCFSCCS---DGNIAVWDLHNQTLVR 475
+ S R + L+S P D +V CCS DG+ + N+ L+
Sbjct: 779 VRSANERKSINVKRFFLSSEDPP-------EDVEVIVKCCSWSADGDKIIVAAKNKVLL- 830
Query: 476 QFQGHTDG 483
F HT G
Sbjct: 831 -FDIHTSG 837
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/354 (21%), Positives = 137/354 (38%), Gaps = 39/354 (11%)
Query: 169 PDGRTLIVGGEASNLSIWDLASPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNI 227
DG +IV + L ++D+ T + AE+ T SP + S +
Sbjct: 808 ADGDKIIVAAKNKVL-LFDI--HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCV 864
Query: 228 AVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGC-------VK 280
+W++ ++ V +GH + S DG+ T D T+R W+ ++ C +
Sbjct: 865 ELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQ 924
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIR----SVKLLPDGRT-----------LIVGGEASN 325
D+ ++T V +D ++ I + LP+ + + G E
Sbjct: 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA 984
Query: 326 LSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTP 385
+ I +L P R+ + A + + D K+ SS S ++VW+ Q G
Sbjct: 985 IKIIEL--PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE--DSVIQVWNW-QTGDYVF 1039
Query: 386 VSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYAL 445
+ ++ +LL D R L + + + +W++ T RI+ + T +
Sbjct: 1040 LQ-----AHQETVKDFRLLQDSRLLSWSFDGT-VKVWNVI--TGRIERDFTCHQGTVLSC 1091
Query: 446 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTG 499
AIS D+ S +D +W + + + +GH C S DG L TG
Sbjct: 1092 AISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATG 1145
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 102/255 (40%), Gaps = 32/255 (12%)
Query: 82 DGQMQPVPFPPDALIGPGI--PRHARQINTLSHGEVVCAVTISNPTKYVYTGGKGCVKVW 139
DG ++ + P + + G+ + R I + G+ + + + ++VW
Sbjct: 982 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL-----------ISSSEDSVIQVW 1030
Query: 140 DISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAEL 199
+ Q G + ++ +LL D R L + + + +W++ T RI+ +
Sbjct: 1031 NW-QTGDYVFLQA-----HQETVKDFRLLQDSRLLSWSFDGT-VKVWNVI--TGRIERDF 1081
Query: 200 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTK 259
T + AIS D+ S +D +W + + + +GH C S DG
Sbjct: 1082 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGIL 1141
Query: 260 LWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVS-QLDCLQRDNYIRSVKLLPDGRTLI 318
L TG + +R W++ +G + S P+S + ++ V PD +TL+
Sbjct: 1142 LATGDDNGEIRIWNVSDGQL-------LHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1194
Query: 319 VGGEASNLSIWDLAS 333
G L W++A+
Sbjct: 1195 SAG--GYLKWWNVAT 1207
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 116/311 (37%), Gaps = 33/311 (10%)
Query: 205 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGG 264
A Y S D + SC +D + V+ + + H D C S+D + + T
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS 676
Query: 265 LDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEA 323
D V+ WD G V +D Q++C N +S LL L G
Sbjct: 677 ADKKVKIWDSATGKLVHTYD-------EHSEQVNCCHFTN--KSNHLL-----LATGSND 722
Query: 324 SNLSIWDLASPTPR-IKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS 382
L +WDL R T+S C SPD + +S +++WD+
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHC---RFSPDDE--LLASCSADGTLRLWDVRSANE 777
Query: 383 KTPVS-QLDCLQRDNYIRSVKLL-------PDGRTLIVGGEASNLSIWDLASPTPRIKAE 434
+ ++ + L ++ V+++ DG +IV + L ++D+ T + AE
Sbjct: 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDI--HTSGLLAE 834
Query: 435 L-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADG 493
+ T SP + S + +W++ ++ V +GH + S DG
Sbjct: 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894
Query: 494 TKLWTGGLDNT 504
+ T D T
Sbjct: 895 SSFLTASDDQT 905
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/248 (19%), Positives = 85/248 (34%), Gaps = 39/248 (15%)
Query: 244 HTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDN 303
HTD S DG ++ + G D T++ + ++ G K LD ++
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFK-----------AETGEKL----LDIKAHED 658
Query: 304 YIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFF 363
+ D + + IWD S T ++ + + S
Sbjct: 659 EVLCCAFSSDDSYIATCSADKKVKIWD--SATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 364 SSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 423
++ +K+WD++Q + + N + + PD L L +WD
Sbjct: 717 ATGSNDFFLKLWDLNQKECRNTM-----FGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Query: 424 LASPTPR-----IKAELTSSAPACYALAISPDSKVCFSCCS---DGNIAVWDLHNQTLVR 475
+ S R + L+S P D +V CCS DG+ + N+ L+
Sbjct: 772 VRSANERKSINVKRFFLSSEDPP-------EDVEVIVKCCSWSADGDKIIVAAKNKVLL- 823
Query: 476 QFQGHTDG 483
F HT G
Sbjct: 824 -FDIHTSG 830
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 36/237 (15%)
Query: 105 RQINTLSHGEVVCAVTISNPTKYVYTGGK-GCVKVWDISQ-PGSKTPVSQLDCLQRDNYI 162
++I T G V+C + + + TG V+VWD++ T + + +
Sbjct: 166 KRILTGHTGSVLC---LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV------ 216
Query: 163 RSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 222
+ L + ++ + ++++WD+ASPT + A + + D K S
Sbjct: 217 --LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV-VDFDDKYIVSAS 273
Query: 223 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVKV 281
D I VW+ VR GH G +C+ + +G DNT+R WD+ G C++V
Sbjct: 274 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV 331
Query: 282 WDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL-ASPTPR 337
+ + +R ++ D + ++ G + +WDL A+ PR
Sbjct: 332 LE----------------GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR 370
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 94/257 (36%), Gaps = 37/257 (14%)
Query: 214 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
D + S D I +WD + R GHT C+ D + TG D+TVR WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL--QYDERVIITGSSDSTVRVWD 199
Query: 274 LREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLAS 333
+ G T + + + + L + ++ + ++++WD+AS
Sbjct: 200 VNTG---------EMLNTLIHHCEAV--------LHLRFNNGMMVTCSKDRSIAVWDMAS 242
Query: 334 PTP-RIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCL 392
PT ++ L A + D + S +KVW+ S +
Sbjct: 243 PTDITLRRVLVGHRAAVNVV----DFDDKYIVSASGDRTIKVWNTSTCEFVRTL------ 292
Query: 393 QRDNYIRSVKLLPDGRTLIVGGEASN-LSIWDLASPTPRIKAELTSSAPACYALAISPDS 451
+ + R + L L+V G + N + +WD+ E C I D+
Sbjct: 293 --NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC----IRFDN 346
Query: 452 KVCFSCCSDGNIAVWDL 468
K S DG I VWDL
Sbjct: 347 KRIVSGAYDGKIKVWDL 363
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 16/179 (8%)
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
L D + ++ G + + IWD T K LT + L + D + S
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWD--KNTLECKRILTGHTGS--VLCLQYDERVIITGSS--D 192
Query: 370 SCVKVWDISQ-PGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPT 428
S V+VWD++ T + + + + L + ++ + ++++WD+ASPT
Sbjct: 193 STVRVWDVNTGEMLNTLIHHCEAV--------LHLRFNNGMMVTCSKDRSIAVWDMASPT 244
Query: 429 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 487
+ A + + D K S D I VW+ VR GH G +C+
Sbjct: 245 DITLRRVLVGHRAAVNV-VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 302
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/270 (18%), Positives = 102/270 (37%), Gaps = 39/270 (14%)
Query: 211 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVR 270
++ D S D + +WD+ ++F GH +DI + + +G D T++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 271 SWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLP------DGRTLIVGGEAS 324
W ++ C+ L ++++ V+++P D T+I G
Sbjct: 133 VWTIKGQCLAT----------------LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 325 NLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKT 384
+ W+L +I+A+ L SPD +S + +W+++ +
Sbjct: 177 XVKAWNL--NQFQIEADFIGHNSNINTLTASPD--GTLIASAGKDGEIXLWNLAAKKAXY 232
Query: 385 PVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL------ASPTPRIKAELTSS 438
+S D + S+ P+ R + A+ + ++ L P ++
Sbjct: 233 TLSAQD------EVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 285
Query: 439 APACYALAISPDSKVCFSCCSDGNIAVWDL 468
P +LA S D + F+ +D I VW +
Sbjct: 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 121/305 (39%), Gaps = 46/305 (15%)
Query: 217 VCFSCCSDGNIAVWDL--HNQTL---VRQFQGHTDGASCIDISADGTKLWTGGLDNTVRS 271
+ S D + W L +Q VR F+GH+ ++ADG + D T+R
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 272 WDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL 331
WD+ G G K+ V +D ++ + I I G + +W +
Sbjct: 92 WDVATGETYQ---RFVGHKSDVXSVDIDKKASXI------------ISGSRDKTIKVWTI 136
Query: 332 ASPTPRIKAELTSSAPACYALAISPDSK----SPFFSSHHYKSCVKVWDISQPGSKTPVS 387
+ A L + + P+ K S S VK W+++Q
Sbjct: 137 KG---QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ-----I 188
Query: 388 QLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAP-ACYALA 446
+ D + ++ I ++ PDG + G+ + +W+LA+ KA T SA ++LA
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK----KAXYTLSAQDEVFSLA 244
Query: 447 ISPDSKVCFSCCSDGNIAVWDLHNQTLVR----QFQGHTDGAS----CIDISADGTKLWT 498
SP+ + + + I V+ L Q LV +F G++ A + SADG L+
Sbjct: 245 FSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
Query: 499 GGLDN 503
G DN
Sbjct: 304 GYTDN 308
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 128 VYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 187
+ G VK W+++Q + D + ++ I ++ PDG + G+ + +W+
Sbjct: 170 ISAGNDKXVKAWNLNQFQI-----EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Query: 188 LASPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR----QFQ 242
LA+ KA T SA ++LA SP+ + + + I V+ L Q LV +F
Sbjct: 225 LAAK----KAXYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Query: 243 GHTDGAS----CIDISADGTKLWTGGLDNTVRSWDL 274
G++ A + SADG L+ G DN +R W +
Sbjct: 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 110 LSHGEVVCAVTISNPTKYVYTGGKG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL 168
+ H V +V I + +G + +KVW I T + D + + + + K
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 169 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 228
D T+I G + W+L +I+A+ L SPD + S DG I
Sbjct: 164 DDSVTIISAGNDKXVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIX 221
Query: 229 VWDL 232
+W+L
Sbjct: 222 LWNL 225
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 447 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
++ D S D + +WD+ ++F GH +DI + + +G D T
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKT 130
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 112/292 (38%), Gaps = 35/292 (11%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 195
V VW+ + GS + +++ D Y+ SVK DG L VG + I+D+ S T
Sbjct: 115 VYVWN-ADSGSVSALAETD---ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 196 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDIS 254
+ C +S + V S G I D+ + QGH+ +
Sbjct: 171 TMAGHQARVGC----LSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226
Query: 255 ADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDG 314
+DG +L +GG DN V+ WD R K +KT + +++V P
Sbjct: 227 SDGLQLASGGNDNVVQIWDARSSIPKF-------TKT--------NHNAAVKAVAWCPWQ 271
Query: 315 RTLIVGGEAS---NLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHY-KS 370
L+ G + + W+ A+ + + +L SP SK S+H + +
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGA---RVNTVDAGSQVTSLIWSPHSKE-IMSTHGFPDN 327
Query: 371 CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIW 422
+ +W S G Q+D D + L PDGR L NL W
Sbjct: 328 NLSIWSYSSSG---LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 9/133 (6%)
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 431
V VW+ + GS + +++ D Y+ SVK DG L VG + I+D+ S T
Sbjct: 115 VYVWN-ADSGSVSALAETD---ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 432 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDIS 490
+ C +S + V S G I D+ + QGH+ +
Sbjct: 171 TMAGHQARVGC----LSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226
Query: 491 ADGTKLWTGGLDN 503
+DG +L +GG DN
Sbjct: 227 SDGLQLASGGNDN 239
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/270 (18%), Positives = 102/270 (37%), Gaps = 39/270 (14%)
Query: 211 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVR 270
++ D S D + +WD+ ++F GH +DI + + +G D T++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 271 SWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLP------DGRTLIVGGEAS 324
W ++ C+ L ++++ V+++P D T+I G
Sbjct: 133 VWTIKGQCLAT----------------LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 325 NLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKT 384
+ W+L +I+A+ L SPD +S + +W+++ +
Sbjct: 177 MVKAWNL--NQFQIEADFIGHNSNINTLTASPD--GTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 385 PVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL------ASPTPRIKAELTSS 438
+S D + S+ P+ R + A+ + ++ L P ++
Sbjct: 233 TLSAQD------EVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAA 285
Query: 439 APACYALAISPDSKVCFSCCSDGNIAVWDL 468
P +LA S D + F+ +D I VW +
Sbjct: 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 113/279 (40%), Gaps = 41/279 (14%)
Query: 238 VRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLD 297
VR F+GH+ ++ADG + D T+R WD+ G G K+ V +D
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVD 114
Query: 298 CLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPD 357
++ + I I G + +W + + A L + + P+
Sbjct: 115 IDKKASMI------------ISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPN 159
Query: 358 SK----SPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVG 413
K S S VK W+++Q + D + ++ I ++ PDG +
Sbjct: 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEA-----DFIGHNSNINTLTASPDGTLIASA 214
Query: 414 GEASNLSIWDLASPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 472
G+ + +W+LA+ KA T SA ++LA SP+ + + + I V+ L Q
Sbjct: 215 GKDGEIMLWNLAAK----KAMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQY 269
Query: 473 LVR----QFQGHTDGAS----CIDISADGTKLWTGGLDN 503
LV +F G++ A + SADG L+ G DN
Sbjct: 270 LVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDN 308
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 128 VYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 187
+ G VK W+++Q + D + ++ I ++ PDG + G+ + +W+
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEA-----DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 188 LASPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR----QFQ 242
LA+ KA T SA ++LA SP+ + + + I V+ L Q LV +F
Sbjct: 225 LAAK----KAMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Query: 243 GHTDGAS----CIDISADGTKLWTGGLDNTVRSWDL 274
G++ A + SADG L+ G DN +R W +
Sbjct: 280 GYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 110 LSHGEVVCAVTISNPTKYVYTGGKG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL 168
+ H V +V I + +G + +KVW I T + D + + + + K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 169 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 228
D T+I G + W+L +I+A+ L SPD + S DG I
Sbjct: 164 DDSVTIISAGNDKMVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 229 VWDL 232
+W+L
Sbjct: 222 LWNL 225
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 447 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
++ D S D + +WD+ ++F GH +DI + + +G D T
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/270 (18%), Positives = 102/270 (37%), Gaps = 39/270 (14%)
Query: 211 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVR 270
++ D S D + +WD+ ++F GH +DI + + +G D T++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 271 SWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLP------DGRTLIVGGEAS 324
W ++ C+ L ++++ V+++P D T+I G
Sbjct: 133 VWTIKGQCLAT----------------LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 325 NLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKT 384
+ W+L +I+A+ L SPD +S + +W+++ +
Sbjct: 177 MVKAWNL--NQFQIEADFIGHNSNINTLTASPD--GTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 385 PVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL------ASPTPRIKAELTSS 438
+S D + S+ P+ R + A+ + ++ L P ++
Sbjct: 233 TLSAQD------EVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 285
Query: 439 APACYALAISPDSKVCFSCCSDGNIAVWDL 468
P +LA S D + F+ +D I VW +
Sbjct: 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 121/305 (39%), Gaps = 46/305 (15%)
Query: 217 VCFSCCSDGNIAVWDL--HNQTL---VRQFQGHTDGASCIDISADGTKLWTGGLDNTVRS 271
+ S D + W L +Q VR F+GH+ ++ADG + D T+R
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 272 WDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL 331
WD+ G G K+ V +D ++ + I I G + +W +
Sbjct: 92 WDVATGETYQ---RFVGHKSDVMSVDIDKKASMI------------ISGSRDKTIKVWTI 136
Query: 332 ASPTPRIKAELTSSAPACYALAISPDSK----SPFFSSHHYKSCVKVWDISQPGSKTPVS 387
+ A L + + P+ K S S VK W+++Q +
Sbjct: 137 KG---QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA--- 190
Query: 388 QLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAP-ACYALA 446
D + ++ I ++ PDG + G+ + +W+LA+ KA T SA ++LA
Sbjct: 191 --DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK----KAMYTLSAQDEVFSLA 244
Query: 447 ISPDSKVCFSCCSDGNIAVWDLHNQTLVR----QFQGHTDGAS----CIDISADGTKLWT 498
SP+ + + + I V+ L Q LV +F G++ A + SADG L+
Sbjct: 245 FSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
Query: 499 GGLDN 503
G DN
Sbjct: 304 GYTDN 308
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 128 VYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 187
+ G VK W+++Q + D + ++ I ++ PDG + G+ + +W+
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEA-----DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 188 LASPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR----QFQ 242
LA+ KA T SA ++LA SP+ + + + I V+ L Q LV +F
Sbjct: 225 LAAK----KAMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Query: 243 GHTDGAS----CIDISADGTKLWTGGLDNTVRSWDL 274
G++ A + SADG L+ G DN +R W +
Sbjct: 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 110 LSHGEVVCAVTISNPTKYVYTGGK-GCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL 168
+ H V +V I + +G + +KVW I T + D + + + + K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 169 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 228
D T+I G + W+L +I+A+ L SPD + S DG I
Sbjct: 164 DDSVTIISAGNDKMVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 229 VWDL 232
+W+L
Sbjct: 222 LWNL 225
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 447 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
++ D S D + +WD+ ++F GH +DI + + +G D T
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/270 (18%), Positives = 102/270 (37%), Gaps = 39/270 (14%)
Query: 211 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVR 270
++ D S D + +WD+ ++F GH +DI + + +G D T++
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 271 SWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLP------DGRTLIVGGEAS 324
W ++ C+ L ++++ V+++P D T+I G
Sbjct: 127 VWTIKGQCLAT----------------LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 325 NLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKT 384
+ W+L +I+A+ L SPD +S + +W+++ +
Sbjct: 171 MVKAWNL--NQFQIEADFIGHNSNINTLTASPD--GTLIASAGKDGEIMLWNLAAKKAMY 226
Query: 385 PVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL------ASPTPRIKAELTSS 438
+S D + S+ P+ R + A+ + ++ L P ++
Sbjct: 227 TLSAQD------EVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 279
Query: 439 APACYALAISPDSKVCFSCCSDGNIAVWDL 468
P +LA S D + F+ +D I VW +
Sbjct: 280 EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 121/305 (39%), Gaps = 46/305 (15%)
Query: 217 VCFSCCSDGNIAVWDL--HNQTL---VRQFQGHTDGASCIDISADGTKLWTGGLDNTVRS 271
+ S D + W L +Q VR F+GH+ ++ADG + D T+R
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 272 WDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL 331
WD+ G G K+ V +D ++ + I I G + +W +
Sbjct: 86 WDVATGETYQ---RFVGHKSDVMSVDIDKKASMI------------ISGSRDKTIKVWTI 130
Query: 332 ASPTPRIKAELTSSAPACYALAISPDSK----SPFFSSHHYKSCVKVWDISQPGSKTPVS 387
+ A L + + P+ K S S VK W+++Q +
Sbjct: 131 KG---QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA--- 184
Query: 388 QLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAP-ACYALA 446
D + ++ I ++ PDG + G+ + +W+LA+ KA T SA ++LA
Sbjct: 185 --DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK----KAMYTLSAQDEVFSLA 238
Query: 447 ISPDSKVCFSCCSDGNIAVWDLHNQTLVR----QFQGHTDGAS----CIDISADGTKLWT 498
SP+ + + + I V+ L Q LV +F G++ A + SADG L+
Sbjct: 239 FSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 297
Query: 499 GGLDN 503
G DN
Sbjct: 298 GYTDN 302
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 128 VYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 187
+ G VK W+++Q + D + ++ I ++ PDG + G+ + +W+
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEA-----DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 188 LASPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR----QFQ 242
LA+ KA T SA ++LA SP+ + + + I V+ L Q LV +F
Sbjct: 219 LAAK----KAMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFA 273
Query: 243 GHTDGAS----CIDISADGTKLWTGGLDNTVRSWDL 274
G++ A + SADG L+ G DN +R W +
Sbjct: 274 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 110 LSHGEVVCAVTISNPTKYVYTGGK-GCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL 168
+ H V +V I + +G + +KVW I T + D + + + + K
Sbjct: 98 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD 157
Query: 169 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 228
D T+I G + W+L +I+A+ L SPD + S DG I
Sbjct: 158 DDSVTIISAGNDKMVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 215
Query: 229 VWDL 232
+W+L
Sbjct: 216 LWNL 219
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 447 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
++ D S D + +WD+ ++F GH +DI + + +G D T
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 124
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/270 (18%), Positives = 102/270 (37%), Gaps = 39/270 (14%)
Query: 211 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVR 270
++ D S D + +WD+ ++F GH +DI + + +G D T++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 271 SWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLP------DGRTLIVGGEAS 324
W ++ C+ L ++++ V+++P D T+I G
Sbjct: 133 VWTIKGQCLAT----------------LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 325 NLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKT 384
+ W+L +I+A+ L SPD +S + +W+++ +
Sbjct: 177 MVKAWNL--NQFQIEADFIGHNSNINTLTASPD--GTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 385 PVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL------ASPTPRIKAELTSS 438
+S D + S+ P+ R + A+ + ++ L P ++
Sbjct: 233 TLSAQD------EVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 285
Query: 439 APACYALAISPDSKVCFSCCSDGNIAVWDL 468
P +LA S D + F+ +D I VW +
Sbjct: 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 121/305 (39%), Gaps = 46/305 (15%)
Query: 217 VCFSCCSDGNIAVWDL--HNQTL---VRQFQGHTDGASCIDISADGTKLWTGGLDNTVRS 271
+ S D + W L +Q VR F+GH+ ++ADG + D T+R
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 272 WDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL 331
WD+ G G K+ V +D ++ + I I G + +W +
Sbjct: 92 WDVATGETYQ---RFVGHKSDVMSVDIDKKASMI------------ISGSRDKTIKVWTI 136
Query: 332 ASPTPRIKAELTSSAPACYALAISPDSK----SPFFSSHHYKSCVKVWDISQPGSKTPVS 387
+ A L + + P+ K S S VK W+++Q +
Sbjct: 137 KG---QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA--- 190
Query: 388 QLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAP-ACYALA 446
D + ++ I ++ PDG + G+ + +W+LA+ KA T SA ++LA
Sbjct: 191 --DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK----KAMYTLSAQDEVFSLA 244
Query: 447 ISPDSKVCFSCCSDGNIAVWDLHNQTLVR----QFQGHTDGAS----CIDISADGTKLWT 498
SP+ + + + I V+ L Q LV +F G++ A + SADG L+
Sbjct: 245 FSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
Query: 499 GGLDN 503
G DN
Sbjct: 304 GYTDN 308
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 128 VYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 187
+ G VK W+++Q + D + ++ I ++ PDG + G+ + +W+
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEA-----DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 188 LASPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR----QFQ 242
LA+ KA T SA ++LA SP+ + + + I V+ L Q LV +F
Sbjct: 225 LAAK----KAMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Query: 243 GHTDGAS----CIDISADGTKLWTGGLDNTVRSWDL 274
G++ A + SADG L+ G DN +R W +
Sbjct: 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 110 LSHGEVVCAVTISNPTKYVYTGGK-GCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL 168
+ H V +V I + +G + +KVW I T + D + + + + K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 169 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 228
D T+I G + W+L +I+A+ L SPD + S DG I
Sbjct: 164 DDSVTIISAGNDKMVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 229 VWDL 232
+W+L
Sbjct: 222 LWNL 225
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 447 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
++ D S D + +WD+ ++F GH +DI + + +G D T
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/268 (18%), Positives = 101/268 (37%), Gaps = 39/268 (14%)
Query: 211 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVR 270
++ D S D + +WD+ ++F GH +DI + + +G D T++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 271 SWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLP------DGRTLIVGGEAS 324
W ++ C+ L ++++ V+++P D T+I G
Sbjct: 133 VWTIKGQCLAT----------------LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 325 NLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKT 384
+ W+L +I+A+ L SPD +S + +W+++ +
Sbjct: 177 MVKAWNL--NQFQIEADFIGHNSNINTLTASPD--GTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 385 PVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL------ASPTPRIKAELTSS 438
+S D + S+ P+ R + A+ + ++ L P ++
Sbjct: 233 TLSAQD------EVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 285
Query: 439 APACYALAISPDSKVCFSCCSDGNIAVW 466
P +LA S D + F+ +D I VW
Sbjct: 286 EPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 121/305 (39%), Gaps = 46/305 (15%)
Query: 217 VCFSCCSDGNIAVWDL--HNQTL---VRQFQGHTDGASCIDISADGTKLWTGGLDNTVRS 271
+ S D + W L +Q VR F+GH+ ++ADG + D T+R
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 272 WDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL 331
WD+ G G K+ V +D ++ + I I G + +W +
Sbjct: 92 WDVATGETYQ---RFVGHKSDVMSVDIDKKASMI------------ISGSRDKTIKVWTI 136
Query: 332 ASPTPRIKAELTSSAPACYALAISPDSK----SPFFSSHHYKSCVKVWDISQPGSKTPVS 387
+ A L + + P+ K S S VK W+++Q +
Sbjct: 137 KG---QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA--- 190
Query: 388 QLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAP-ACYALA 446
D + ++ I ++ PDG + G+ + +W+LA+ KA T SA ++LA
Sbjct: 191 --DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK----KAMYTLSAQDEVFSLA 244
Query: 447 ISPDSKVCFSCCSDGNIAVWDLHNQTLVR----QFQGHTDGAS----CIDISADGTKLWT 498
SP+ + + + I V+ L Q LV +F G++ A + SADG L+
Sbjct: 245 FSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
Query: 499 GGLDN 503
G DN
Sbjct: 304 GYTDN 308
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 128 VYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 187
+ G VK W+++Q + D + ++ I ++ PDG + G+ + +W+
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEA-----DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 188 LASPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR----QFQ 242
LA+ KA T SA ++LA SP+ + + + I V+ L Q LV +F
Sbjct: 225 LAAK----KAMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Query: 243 GHTDGAS----CIDISADGTKLWTGGLDNTVRSW 272
G++ A + SADG L+ G DN +R W
Sbjct: 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 110 LSHGEVVCAVTISNPTKYVYTGGK-GCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL 168
+ H V +V I + +G + +KVW I T + D + + + + K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 169 PDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 228
D T+I G + W+L +I+A+ L SPD + S DG I
Sbjct: 164 DDSVTIISAGNDKMVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 229 VWDL 232
+W+L
Sbjct: 222 LWNL 225
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 447 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
++ D S D + +WD+ ++F GH +DI + + +G D T
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/323 (20%), Positives = 120/323 (37%), Gaps = 32/323 (9%)
Query: 164 SVKLLPDGRTLIVGGEASNLSIWDLASPTPRI-----KAELTSSAPACYALAISPDSKVC 218
S K D LI G + IW L LT LA+S ++
Sbjct: 32 SQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91
Query: 219 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGC 278
S D + +WDL T ++F GH + S D ++ + G + ++ W++ C
Sbjct: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151
Query: 279 VKVWDISQPGSKTPVSQLDCLQRDNYIRSV-KLLPDGRTLIVGGEASNLSIWDLASPTPR 337
S + + C++ ++S K+ P G L +W+ +
Sbjct: 152 ----KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN---TNFQ 204
Query: 338 IKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNY 397
I+ + L+ISP+ K + ++ + +WDI P + D +
Sbjct: 205 IRYTFKAHESNVNHLSISPNGK--YIATGGKDKKLLIWDILNL--TYPQREFDA---GST 257
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLAS----PTPRIKAELTSSA-------PACYALA 446
I + P + + VG + + I++L + P I+AE + A P C +LA
Sbjct: 258 INQIAFNPKLQWVAVGTD-QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLA 316
Query: 447 ISPDSKVCFSCCSDGNIAVWDLH 469
+ K F+ +DG I +
Sbjct: 317 WNALGKKLFAGFTDGVIRTFSFE 339
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 109/308 (35%), Gaps = 69/308 (22%)
Query: 197 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF-------QGHTDGAS 249
++ +S A ++ + DS V S D + +W L+ + F GH S
Sbjct: 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS 80
Query: 250 CIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 309
+ +S + + D T+R WDLR G T + Q + Y SV
Sbjct: 81 DLALSQENCFAISSSWDKTLRLWDLRTG-------------TTYKRFVGHQSEVY--SVA 125
Query: 310 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYK 369
PD R ++ G + +W++ C + ++ S + S Y
Sbjct: 126 FSPDNRQILSAGAEREIKLWNILGE--------------CKFSSAEKENHSDWVSCVRYS 171
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTP 429
+K + QP + Y SV DGR L +W+
Sbjct: 172 PIMKSANKVQPFAP-------------YFASVGW--DGR----------LKVWN---TNF 203
Query: 430 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCID 488
+I+ + L+ISP+ K + D + +WD+ N T R+F D S I+
Sbjct: 204 QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF----DAGSTIN 259
Query: 489 ISADGTKL 496
A KL
Sbjct: 260 QIAFNPKL 267
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 5/108 (4%)
Query: 400 SVKLLPDGRTLIVGGEASNLSIWDLASPTPRI-----KAELTSSAPACYALAISPDSKVC 454
S K D LI G + IW L LT LA+S ++
Sbjct: 32 SQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91
Query: 455 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 502
S D + +WDL T ++F GH + S D ++ + G +
Sbjct: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAE 139
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/235 (19%), Positives = 87/235 (37%), Gaps = 40/235 (17%)
Query: 75 YSYHVTTDGQMQPVPFPPD--ALIGPGIPRHARQINTL-----------SHGEVVCAVTI 121
Y V ++ V F PD ++ G R + N L +H + V V
Sbjct: 111 YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY 170
Query: 122 SNPTK-----------YVYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPD 170
S K + G G +KVW+ + T + ++ + + + P+
Sbjct: 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAH------ESNVNHLSISPN 224
Query: 171 GRTLIVGGEASNLSIWDLASPT-PRIKAELTSSA------PACYALAISPDSKV-CFSCC 222
G+ + GG+ L IWD+ + T P+ + + S+ P +A+ D V F+
Sbjct: 225 GKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLM 284
Query: 223 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS--ADGTKLWTGGLDNTVRSWDLR 275
+ V + + + + C ++ A G KL+ G D +R++
Sbjct: 285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/383 (19%), Positives = 133/383 (34%), Gaps = 65/383 (16%)
Query: 102 RHARQINTLSHGEVVCAVTISNPTKYVYTGGKGC-VKVWDISQPGSKTPVSQLDCLQRDN 160
H+ Q+N C T S+ + TG C +K+WD++Q + + N
Sbjct: 703 EHSEQVN-------CCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTM-----FGHTN 750
Query: 161 YIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAIS---PDSKV 217
+ + PD + L L +WD S R + + L + D +V
Sbjct: 751 SVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQ-----FFLNLEDPQEDMEV 805
Query: 218 CFSCCS---DG---------NIAVWDLHNQTLVRQFQ-GHTDGASCIDISADGTKLWTGG 264
CCS DG I ++D+H L+ + GH D S
Sbjct: 806 IVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQ-------- 857
Query: 265 LDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEAS 324
N + L + CV++W+ S++ V+ DC +++ V PDG + + +
Sbjct: 858 --NHLAVVALSQYCVELWN---TDSRSKVA--DCRGHLSWVHGVMFSPDGSSFLTSSDDQ 910
Query: 325 NLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKT 384
+ +W+ L + +++ + H + + +T
Sbjct: 911 TIRLWETKKVCKNSAVMLKQEVDVVF-----QENEVMVLAVDHIRR------LQLINGRT 959
Query: 385 PVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYA 444
Q+D L + + L P + + G E + I +L + RI +
Sbjct: 960 --GQIDYLT-EAQVSCCCLSPHLQYIAFGDENGAIEILELVN--NRIFQSRFQHKKTVWH 1014
Query: 445 LAISPDSKVCFSCCSDGNIAVWD 467
+ + D K S D I VW+
Sbjct: 1015 IQFTADEKTLISSSDDAEIQVWN 1037
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 114/312 (36%), Gaps = 35/312 (11%)
Query: 205 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGG 264
A Y S D + SC +D + V+ + + + H D C S D + T
Sbjct: 623 AVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCS 682
Query: 265 LDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEA 323
+D V+ W+ G V +D Q++C N S LL L G
Sbjct: 683 VDKKVKIWNSMTGELVHTYD-------EHSEQVNCCHFTN--SSHHLL-----LATGSSD 728
Query: 324 SNLSIWDLASPTPR-IKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS 382
L +WDL R T+S C SPD K +S +K+WD +
Sbjct: 729 CFLKLWDLNQKECRNTMFGHTNSVNHC---RFSPDDK--LLASCSADGTLKLWDATSANE 783
Query: 383 KTPVS------QLDCLQRDN--YIRSVKLLPDGRTLIVGGEASNLSIWDLASP--TPRIK 432
+ ++ L+ Q D ++ DG ++V + + + ++D+ + I
Sbjct: 784 RKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAK-NKIFLFDIHTSGLLGEIH 842
Query: 433 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISAD 492
S+ C SP + + S + +W+ +++ V +GH + S D
Sbjct: 843 TGHHSTIQYC---DFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPD 899
Query: 493 GTKLWTGGLDNT 504
G+ T D T
Sbjct: 900 GSSFLTSSDDQT 911
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/199 (19%), Positives = 75/199 (37%), Gaps = 14/199 (7%)
Query: 162 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
++ +LL + R L + + + +W++ T + + + IS D+ S
Sbjct: 1053 VKDFRLLKNSRLLSWSFDGT-VKVWNII--TGNKEKDFVCHQGTVLSCDISHDATKFSST 1109
Query: 222 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKV 281
+D +W + + +GH C S D T L TG + +R W++ G
Sbjct: 1110 SADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNG---- 1165
Query: 282 WDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAE 341
P+S+ ++ + PDG+ LI G + W++ T
Sbjct: 1166 ---ELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNVV--TGESSQT 1218
Query: 342 LTSSAPACYALAISPDSKS 360
++ + +SPD K+
Sbjct: 1219 FYTNGTNLKKIHVSPDFKT 1237
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/372 (21%), Positives = 141/372 (37%), Gaps = 60/372 (16%)
Query: 88 VPFPPDALIGPGIPRHARQINTL--SHGEVVCAVTISNPTKYVYTGGKG-CVKVWDISQP 144
+P PD ++ R+ +N + S G V+ AV + N Y+++ G +++ + QP
Sbjct: 89 IPSLPDRILDAPEIRNDYYLNLVDWSSGNVL-AVALDNSV-YLWSASSGDILQLLQMEQP 146
Query: 145 GSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAP 204
G YI SV + +G L VG ++ + +WD+ R++ + SA
Sbjct: 147 G--------------EYISSVAWIKEGNYLAVGTSSAEVQLWDV-QQQKRLRNMTSHSAR 191
Query: 205 ACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISADGTKLWTG 263
++S +S + S G+I D+ + V GH+ + + DG L +G
Sbjct: 192 VG---SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 248
Query: 264 GLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLP-DGRTLIVGGE 322
G DN V W S PG V Q +++V P L GG
Sbjct: 249 GNDNLVNVWP-----------SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 323 ASN--LSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQP 380
S+ + IW++ S AC + + S HYK + +Q
Sbjct: 298 TSDRHIRIWNVCS-------------GACLSAVDAHSQVCSILWSPHYKELISGHGFAQN 344
Query: 381 G-------SKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 433
+ V++L + + S+ + PDG T+ L +W P +
Sbjct: 345 QLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 402
Query: 434 ELTSSAPACYAL 445
E ++ A +L
Sbjct: 403 EREKASAAKSSL 414
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 389 LDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAIS 448
L Q YI SV + +G L VG ++ + +WD+ R++ + SA ++S
Sbjct: 141 LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV-QQQKRLRNMTSHSARVG---SLS 196
Query: 449 PDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDN 503
+S + S G+I D+ + V GH+ + + DG L +GG DN
Sbjct: 197 WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 252
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 100/286 (34%), Gaps = 65/286 (22%)
Query: 264 GLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGE 322
LDN+V W G +++ + QPG YI SV + +G L VG
Sbjct: 122 ALDNSVYLWSASSGDILQLLQMEQPG--------------EYISSVAWIKEGNYLAVGTS 167
Query: 323 ASNLSIWD---------LASPTPRIK------------------------------AELT 343
++ + +WD + S + R+ A L+
Sbjct: 168 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 227
Query: 344 SSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKL 403
+ L +PD + +S + V VW S PG V Q +++V
Sbjct: 228 GHSQEVCGLRWAPDGR--HLASGGNDNLVNVWP-SAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 404 LP-DGRTLIVGGEASN--LSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC--C 458
P L GG S+ + IW++ S + + + + C L SP K S
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWNVCSGA--CLSAVDAHSQVCSIL-WSPHYKELISGHGF 341
Query: 459 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
+ + +W V + +GHT + +S DG + + D T
Sbjct: 342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 387
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 134 GCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTP 193
G V++W+I + S V++ + D+ ++++ + DG + GG+ ++ +WDL+
Sbjct: 115 GAVELWEILEKES-LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV 173
Query: 194 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 231
SS C A D+ + SC DG I +WD
Sbjct: 174 LKSYNAHSSEVNCVAACPGKDT-IFLSCGEDGRILLWD 210
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 431
V++W+I + S V++ + D+ ++++ + DG + GG+ ++ +WDL+
Sbjct: 117 VELWEILEKES-LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK 175
Query: 432 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 467
SS C A D+ + SC DG I +WD
Sbjct: 176 SYNAHSSEVNCVAACPGKDT-IFLSCGEDGRILLWD 210
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Query: 225 GNIAVWDLHNQT--LVRQFQG--HTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVK 280
G + +W++ + LV +F H D + + +DGT+ +GG D +V+ WDL + V
Sbjct: 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV- 173
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVG-GEASNLSIWDLASPTPRIK 339
S+++C V P T+ + GE + +WD P P +
Sbjct: 174 -----LKSYNAHSSEVNC---------VAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219
Query: 340 AELTSSAPACYALAISPDSKSPF 362
+ +S ++ P+ F
Sbjct: 220 IDFCASDTIPTSVTWHPEKDDTF 242
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 112 HGEVVCAVTI-SNPTKYVYTGGKGCVKVWDISQPG----SKTPVSQLDCLQRDNYIRSVK 166
H ++V +++ S+ T+ V G VKVWD+SQ S+++C V
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNC---------VA 188
Query: 167 LLPDGRTLIVG-GEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD- 224
P T+ + GE + +WD P P + + +S ++ P+ F+C +
Sbjct: 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248
Query: 225 GNIAVWDLHN 234
GN+++ ++ N
Sbjct: 249 GNVSLVNIKN 258
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 372 VKVWDISQPG----SKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVG-GEASNLSIWDLAS 426
VKVWD+SQ S+++C V P T+ + GE + +WD
Sbjct: 163 VKVWDLSQKAVLKSYNAHSSEVNC---------VAACPGKDTIFLSCGEDGRILLWDTRK 213
Query: 427 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-GNIAVWDLHN 470
P P + + +S ++ P+ F+C + GN+++ ++ N
Sbjct: 214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/82 (14%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 408 RTLIVGGEASNLSIWDLASPTPRIKAELTSSA--PACYALAISPDSKVCFSCCSDGNIAV 465
+ ++V ++ + +W++ + + L++ D S D ++ V
Sbjct: 106 KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165
Query: 466 WDLHNQTLVRQFQGHTDGASCI 487
WDL + +++ + H+ +C+
Sbjct: 166 WDLSQKAVLKSYNAHSSEVNCV 187
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/372 (21%), Positives = 141/372 (37%), Gaps = 60/372 (16%)
Query: 88 VPFPPDALIGPGIPRHARQINTL--SHGEVVCAVTISNPTKYVYTGGKG-CVKVWDISQP 144
+P PD ++ R+ +N + S G V+ AV + N Y+++ G +++ + QP
Sbjct: 100 IPSLPDRILDAPEIRNDYYLNLVDWSSGNVL-AVALDNSV-YLWSASSGDILQLLQMEQP 157
Query: 145 GSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAP 204
G YI SV + +G L VG ++ + +WD+ R++ + SA
Sbjct: 158 G--------------EYISSVAWIKEGNYLAVGTSSAEVQLWDV-QQQKRLRNMTSHSAR 202
Query: 205 ACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISADGTKLWTG 263
++S +S + S G+I D+ + V GH+ + + DG L +G
Sbjct: 203 VG---SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 259
Query: 264 GLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLP-DGRTLIVGGE 322
G DN V W S PG V Q +++V P L GG
Sbjct: 260 GNDNLVNVWP-----------SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 323 ASN--LSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQP 380
S+ + IW++ S AC + + S HYK + +Q
Sbjct: 309 TSDRHIRIWNVCS-------------GACLSAVDAHSQVCSILWSPHYKELISGHGFAQN 355
Query: 381 G-------SKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 433
+ V++L + + S+ + PDG T+ L +W P +
Sbjct: 356 QLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 413
Query: 434 ELTSSAPACYAL 445
E ++ A +L
Sbjct: 414 EREKASAAKSSL 425
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 389 LDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAIS 448
L Q YI SV + +G L VG ++ + +WD+ R++ + SA ++S
Sbjct: 152 LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV-QQQKRLRNMTSHSARVG---SLS 207
Query: 449 PDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDN 503
+S + S G+I D+ + V GH+ + + DG L +GG DN
Sbjct: 208 WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 263
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 100/286 (34%), Gaps = 65/286 (22%)
Query: 264 GLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGE 322
LDN+V W G +++ + QPG YI SV + +G L VG
Sbjct: 133 ALDNSVYLWSASSGDILQLLQMEQPG--------------EYISSVAWIKEGNYLAVGTS 178
Query: 323 ASNLSIWD---------LASPTPRIK------------------------------AELT 343
++ + +WD + S + R+ A L+
Sbjct: 179 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 238
Query: 344 SSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKL 403
+ L +PD + +S + V VW S PG V Q +++V
Sbjct: 239 GHSQEVCGLRWAPDGR--HLASGGNDNLVNVWP-SAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 404 LP-DGRTLIVGGEASN--LSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC--C 458
P L GG S+ + IW++ S + + + + C L SP K S
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWNVCSGA--CLSAVDAHSQVCSIL-WSPHYKELISGHGF 352
Query: 459 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
+ + +W V + +GHT + +S DG + + D T
Sbjct: 353 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 398
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/333 (19%), Positives = 118/333 (35%), Gaps = 48/333 (14%)
Query: 171 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 230
G ++ G + + L +W ++ T + L ++ + + + S +D + VW
Sbjct: 129 GNRIVSGSDDNTLKVW--SAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVW 184
Query: 231 DLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGS 289
+ + GHT C+ + ++ +G D T+R WD+ G C+ V
Sbjct: 185 NAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIETGQCLHV-------L 235
Query: 290 KTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPAC 349
V+ + C+Q DGR ++ G + +WD T L
Sbjct: 236 MGHVAAVRCVQ-----------YDGRRVVSGAYDFMVKVWD--PETETCLHTLQGHTNRV 282
Query: 350 YALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRT 409
Y+L S + ++VWD+ + L + S L D
Sbjct: 283 YSLQFD----GIHVVSGSLDTSIRVWDVETGNC------IHTLTGHQSLTSGMELKDN-I 331
Query: 410 LIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAIS---PDSKVCFSCCSDGNIAVW 466
L+ G S + IWD+ + + T P + A++ + + DG + +W
Sbjct: 332 LVSGNADSTVKIWDIKTG----QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Query: 467 DLHNQTLVRQFQGHTDGAS---CIDISADGTKL 496
DL +R G S I A TKL
Sbjct: 388 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 420
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 36/213 (16%)
Query: 126 KYVYTGGK-GCVKVWDISQPGSKTPVSQLDCLQ-RDNYIRSVKLLP-DGRTLIVGGEASN 182
K V +G + ++VWDI CL ++ +V+ + DGR ++ G
Sbjct: 210 KRVVSGSRDATLRVWDIETG---------QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM 260
Query: 183 LSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 242
+ +WD + T L Y+L D S D +I VWD+ +
Sbjct: 261 VKVWDPETET--CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Query: 243 GHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQR 301
GH S +++ + L +G D+TV+ WD++ G C++ + G S + CLQ
Sbjct: 317 GHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQ----TLQGPNKHQSAVTCLQF 370
Query: 302 D-NYIRSVKLLPDGRTLIVGGEASNLSIWDLAS 333
+ N++ I + + +WDL +
Sbjct: 371 NKNFV------------ITSSDDGTVKLWDLKT 391
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 408 RTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 467
+ ++ G + L +WD+ + +A C + D + S D + VWD
Sbjct: 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC----VQYDGRRVVSGAYDFMVKVWD 265
Query: 468 LHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
+T + QGHT+ + DG + +G LD +
Sbjct: 266 PETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS 300
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 133/349 (38%), Gaps = 60/349 (17%)
Query: 88 VPFPPDALIGPGIPRHARQINTL--SHGEVVCAVTISNPTKYVYTGGKG-CVKVWDISQP 144
+P PD ++ R+ +N + S G V+ AV + N Y+++ G +++ + QP
Sbjct: 9 IPSLPDRILDAPEIRNDYYLNLVDWSSGNVL-AVALDNSV-YLWSASSGDILQLLQMEQP 66
Query: 145 GSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAP 204
G YI SV + +G L VG ++ + +WD+ R++ + SA
Sbjct: 67 G--------------EYISSVAWIKEGNYLAVGTSSAEVQLWDV-QQQKRLRNMTSHSAR 111
Query: 205 ACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISADGTKLWTG 263
++S +S + S G+I D+ + V GH+ + + DG L +G
Sbjct: 112 VG---SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 168
Query: 264 GLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLP-DGRTLIVGGE 322
G DN V W S PG V Q +++V P L GG
Sbjct: 169 GNDNLVNVWP-----------SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 323 ASN--LSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQP 380
S+ + IW++ S AC + + S HYK + +Q
Sbjct: 218 TSDRHIRIWNVCS-------------GACLSAVDAHSQVCSILWSPHYKELISGHGFAQN 264
Query: 381 G-------SKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIW 422
+ V++L + + S+ + PDG T+ L +W
Sbjct: 265 QLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 11/179 (6%)
Query: 105 RQINTLS-HGEVVCAVTISNPTKYVYTGGK-GCVKVWDISQPGSKTPVSQLDCLQRDNYI 162
+ TLS H + VC + + +++ +GG V VW S PG V Q +
Sbjct: 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP-SAPGEGGWVPLQTFTQHQGAV 199
Query: 163 RSVKLLP-DGRTLIVGGEASN--LSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCF 219
++V P L GG S+ + IW++ S + + + + C ++ SP K
Sbjct: 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--CLSAVDAHSQVC-SILWSPHYKELI 256
Query: 220 SC--CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLRE 276
S + + +W V + +GHT + +S DG + + D T+R W E
Sbjct: 257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 389 LDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAIS 448
L Q YI SV + +G L VG ++ + +WD+ R++ + SA ++S
Sbjct: 61 LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV-QQQKRLRNMTSHSARVG---SLS 116
Query: 449 PDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDN 503
+S + S G+I D+ + V GH+ + + DG L +GG DN
Sbjct: 117 WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 172
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 101/285 (35%), Gaps = 65/285 (22%)
Query: 265 LDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEA 323
LDN+V W G +++ + QPG YI SV + +G L VG +
Sbjct: 43 LDNSVYLWSASSGDILQLLQMEQPG--------------EYISSVAWIKEGNYLAVGTSS 88
Query: 324 SNLSIWD---------LASPTPRIK------------------------------AELTS 344
+ + +WD + S + R+ A L+
Sbjct: 89 AEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 148
Query: 345 SAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL 404
+ L +PD + +S + V VW S PG V Q +++V
Sbjct: 149 HSQEVCGLRWAPDGR--HLASGGNDNLVNVWP-SAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 405 P-DGRTLIVGGEASN--LSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC--CS 459
P L GG S+ + IW++ S + + + + C ++ SP K S +
Sbjct: 206 PWQSNVLATGGGTSDRHIRIWNVCSGA--CLSAVDAHSQVC-SILWSPHYKELISGHGFA 262
Query: 460 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
+ +W V + +GHT + +S DG + + D T
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 94/403 (23%), Positives = 161/403 (39%), Gaps = 73/403 (18%)
Query: 127 YVYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLL---PDGRTLIVGGEASNL 183
+ TGG G + +++ G+KT V + D L+ + SV L PDG + +
Sbjct: 205 FASTGGDGTIVLYN-GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI 263
Query: 184 SIWDLASPTPRIKAELT---SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 240
IW++A+ +K E T + L I + S ++G I + ++ +
Sbjct: 264 KIWNVAT----LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV 319
Query: 241 FQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVK-----VWDISQPGSKTPVS- 294
GH + + SADG L++ + + SWD+ G V G KT
Sbjct: 320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 379
Query: 295 QLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAI 354
L + D+++ K++P G + + + + A SS P LA+
Sbjct: 380 DLFTVSWDDHL---KVVPAGGSGV---------------DSSKAVANKLSSQP--LGLAV 419
Query: 355 SPDSKSPFFSSHHYKSCVKVWDISQPG--SKTPVSQLDCLQRDNYIRS-VKLLPDGRTLI 411
S D +C K I G ++ P+S Y S V L D + +
Sbjct: 420 SADGDIAV------AACYKHIAIYSHGKLTEVPIS---------YNSSCVALSNDKQFVA 464
Query: 412 VGGEASNLSIWDLA-SPTPRIK-----AELTSSA---PACYALAISPDSKVC-FSCCSDG 461
VGG+ S + ++ L+ + +K AE+TS A + +A KV +S ++
Sbjct: 465 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 524
Query: 462 NIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
+A H + + HT +C+ S D +L TG LDN+
Sbjct: 525 ELA----HTNS----WTFHTAKVACVSWSPDNVRLATGSLDNS 559
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 31/177 (17%)
Query: 165 VKLLPDGRTLIVGGEASNLSIWDLA-SPTPRIK-----AELTSSA---PACYALAISPDS 215
V L D + + VGG+ S + ++ L+ + +K AE+TS A + +A
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 513
Query: 216 KVC-FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDL 274
KV +S ++ +A H + + HT +C+ S D +L TG LDN+V
Sbjct: 514 KVIPYSVANNFELA----HTNS----WTFHTAKVACVSWSPDNVRLATGSLDNSVI---- 561
Query: 275 REGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL 331
VW++++P S P+ + + + SV L + T++ G+ SN+ W++
Sbjct: 562 ------VWNMNKP-SDHPI-IIKGAHAMSSVNSVIWLNE-TTIVSAGQDSNIKFWNV 609
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 107/293 (36%), Gaps = 25/293 (8%)
Query: 212 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRS 271
SP C S GN+ +WD T + + DIS D +
Sbjct: 68 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE- 126
Query: 272 WDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL 331
R G V ++D T S + + + SV P I+ G N ++
Sbjct: 127 ---RFGHVFLFD-------TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN-TVAIF 175
Query: 332 ASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDC 391
P + K+ +++ +PD F+S + +++ G+KT V + D
Sbjct: 176 EGPPFKFKSTFGEHTKFVHSVRYNPDGS--LFASTGGDGTIVLYN-GVDGTKTGVFEDDS 232
Query: 392 LQRDNYIRSVKLL---PDGRTLIVGGEASNLSIWDLASPTPRIKAELT---SSAPACYAL 445
L+ + SV L PDG + + IW++A+ +K E T + L
Sbjct: 233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT----LKVEKTIPVGTRIEDQQL 288
Query: 446 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWT 498
I + S ++G I + ++ + GH + + SADG L++
Sbjct: 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFS 341
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 24/139 (17%)
Query: 163 RSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYAL------------- 209
++ K+ +G +L+ +A N S+WD + LT+SA L
Sbjct: 124 KTAKVWKEG-SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGI 182
Query: 210 --------AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLW 261
A+ D SC +DG I + D H ++R ++GH CI + +G +
Sbjct: 183 HNDVVRHLAVVDDGHF-ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIV- 240
Query: 262 TGGLDNTVRSWDLREGCVK 280
+ G D TVR W G +K
Sbjct: 241 SCGEDRTVRIWSKENGSLK 259
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 23/116 (19%)
Query: 399 RSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYAL------------- 445
++ K+ +G +L+ +A N S+WD + LT+SA L
Sbjct: 124 KTAKVWKEG-SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGI 182
Query: 446 --------AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADG 493
A+ D SC +DG I + D H ++R ++GH CI + +G
Sbjct: 183 HNDVVRHLAVVDDGHF-ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNG 237
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 12/208 (5%)
Query: 277 GCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTP 336
G V++W++ + VS+ + D+ + +V +L G + G + + +WDLA
Sbjct: 103 GAVELWELDE-NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV- 160
Query: 337 RIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDN 396
+ + + A +A SP S F S + +WD P P SQ+ C
Sbjct: 161 -VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR-ILLWDTRCP---KPASQIGCSAPGY 215
Query: 397 YIRSVKLLP-DGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDS-KVC 454
S+ P + G E +S+ D S + + + + S L SP S
Sbjct: 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ--CVTGLVFSPHSVPFL 273
Query: 455 FSCCSDGNIAVWDLHNQTLVRQFQGHTD 482
S D ++AV D L R Q H D
Sbjct: 274 ASLSEDCSLAVLDSSLSELFRS-QAHRD 300
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 134 GCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTP 193
G V++W++ + VS+ + D+ + +V +L G + G + + +WDLA
Sbjct: 103 GAVELWELDE-NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV 161
Query: 194 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 231
++ C A + DS V SC D I +WD
Sbjct: 162 LSSYRAHAAQVTCVAASPHKDS-VFLSCSEDNRILLWD 198
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 225 GNIAVWDL-HNQTL-VRQF--QGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVK 280
G + +W+L N+TL V +F H D S + + + GT+ +G D ++ WDL + V
Sbjct: 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL 162
Query: 281 VWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA 340
+ +Q+ C+ + SV + E + + +WD P P +
Sbjct: 163 ------SSYRAHAAQVTCVAASPHKDSV--------FLSCSEDNRILLWDTRCPKP--AS 206
Query: 341 ELTSSAP 347
++ SAP
Sbjct: 207 QIGCSAP 213
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 112 HGEVVCAVTISNPTKYVYTGGKG-CVKVWDISQ----PGSKTPVSQLDCLQRDNYIRSVK 166
H ++V V++ + +G K C+KVWD++Q + +Q+ C+ + SV
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV- 184
Query: 167 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAP 204
+ E + + +WD P P +++ SAP
Sbjct: 185 -------FLSCSEDNRILLWDTRCPKP--ASQIGCSAP 213
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 103 HARQINTLSHGE--VVCAVTISNPTKYVYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDN 160
H + T+ + + + AVT + + G +K+WD Q G++ SQ+ L D
Sbjct: 179 HKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEP--SQILSLTGDR 236
Query: 161 Y-IRSVKLLPDGRTLI-VGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDS-KV 217
+ V P+ + ++ GG+ LSIWD+ T + L + + + P + +
Sbjct: 237 VPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSL-LKAHEAEMWEVHFHPSNPEH 295
Query: 218 CFSCCSDGNIAVWD 231
F+C DG++ WD
Sbjct: 296 LFTCSEDGSLWHWD 309
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNY-IRSVKLLPDGRTLI-VGGEASNLSIWDLASPTP 429
+K+WD Q G++ SQ+ L D + V P+ + ++ GG+ LSIWD+ T
Sbjct: 214 LKIWDFRQQGNEP--SQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTM 271
Query: 430 RIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWD 467
+ L + + + P + + F+C DG++ WD
Sbjct: 272 PVSL-LKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 277 GCVKVWDISQPGSKTPVSQLDCLQRDNY-IRSVKLLPDGRTLI-VGGEASNLSIWDLASP 334
G +K+WD Q G++ SQ+ L D + V P+ + ++ GG+ LSIWD+
Sbjct: 212 GQLKIWDFRQQGNEP--SQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQG 269
Query: 335 TPRIKAELTSSAPACYALAISPDSKSPFFS 364
T + L + + + P + F+
Sbjct: 270 TMPVSL-LKAHEAEMWEVHFHPSNPEHLFT 298
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 95/274 (34%), Gaps = 57/274 (20%)
Query: 214 DSKVCFSCCSDGNIAVWDLHNQTLVRQF---QGHTDGASCIDISADGTKLWTGGLDNTVR 270
D + S D + +W++ TLV F +GH D D G K+ + G+D++++
Sbjct: 163 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 222
Query: 271 SWDLR-----EGCVKVWDISQPGSKTP-VSQL----DCLQRD---NYIRSVKLLPDGRTL 317
W + + +D + + P +SQ D RD NY+ V+ L D L
Sbjct: 223 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGD---L 279
Query: 318 IVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDI 377
I+ N A C+ D S + + +D
Sbjct: 280 ILSKSCEN--------------------AIVCWKPGKMEDDIDKIKPSESNVTILGRFDY 319
Query: 378 SQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTS 437
SQ +D Q + L +G + L +WDL P T
Sbjct: 320 SQCDIWYMRFSMDFWQ--------------KMLALGNQVGKLYVWDLEVEDPHKAKCTTL 365
Query: 438 SAPACYA----LAISPDSKVCFSCCSDGNIAVWD 467
+ C A + S DS + + C D +I WD
Sbjct: 366 THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 399
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 148 TPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACY 207
T + + D Q D + + + L +G + L +WDL P T + C
Sbjct: 312 TILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCG 371
Query: 208 A----LAISPDSKVCFSCCSDGNIAVWD 231
A + S DS + + C D +I WD
Sbjct: 372 AAIRQTSFSRDSSILIAVCDDASIWRWD 399
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 450 DSKVCFSCCSDGNIAVWDLHNQTLVRQF---QGHTDGASCIDISADGTKLWTGGLDNT 504
D + S D + +W++ TLV F +GH D D G K+ + G+D++
Sbjct: 163 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS 220
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 198 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADG 257
+LT + + + + FSC D + +VW N + GHT ID+
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 258 TKLWTGGLDNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSV 308
TG D +++ WD+ G CV W S PV +++ NY ++
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWK-----SPVPVKRVEFSPCGNYFLAI 133
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 95/274 (34%), Gaps = 57/274 (20%)
Query: 214 DSKVCFSCCSDGNIAVWDLHNQTLVRQF---QGHTDGASCIDISADGTKLWTGGLDNTVR 270
D + S D + +W++ TLV F +GH D D G K+ + G+D++++
Sbjct: 127 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 186
Query: 271 SW-----DLREGCVKVWDISQPGSKTP-VSQL----DCLQRD---NYIRSVKLLPDGRTL 317
W + + +D + + P +SQ D RD NY+ V+ L D L
Sbjct: 187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGD---L 243
Query: 318 IVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDI 377
I+ N A C+ D S + + +D
Sbjct: 244 ILSKSCEN--------------------AIVCWKPGKMEDDIDKIKPSESNVTILGRFDY 283
Query: 378 SQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTS 437
SQ +D Q + L +G + L +WDL P T
Sbjct: 284 SQCDIWYMRFSMDFWQ--------------KMLALGNQVGKLYVWDLEVEDPHKAKCTTL 329
Query: 438 SAPACYA----LAISPDSKVCFSCCSDGNIAVWD 467
+ C A + S DS + + C D +I WD
Sbjct: 330 THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 148 TPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACY 207
T + + D Q D + + + L +G + L +WDL P T + C
Sbjct: 276 TILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCG 335
Query: 208 A----LAISPDSKVCFSCCSDGNIAVWD 231
A + S DS + + C D +I WD
Sbjct: 336 AAIRQTSFSRDSSILIAVCDDASIWRWD 363
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 97/275 (35%), Gaps = 59/275 (21%)
Query: 214 DSKVCFSCCSDGNIAVWDLHNQTLVRQF---QGHTDGASCIDISADGTKLWTGGLDNTVR 270
D + S D + +W++ TLV F +GH D D G K+ + G+D++++
Sbjct: 122 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 181
Query: 271 SW-----DLREGCVKVWDISQPGSKTP-VSQL----DCLQRD---NYIRSVKLLPDGRTL 317
W + + +D + + P +SQ D RD NY+ V+ L D L
Sbjct: 182 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGD---L 238
Query: 318 IVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDI 377
I+ N A C+ D S + + +D
Sbjct: 239 ILSKSCEN--------------------AIVCWKPGKMEDDIDKIKPSESNVTILGRFDY 278
Query: 378 SQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTS 437
SQ +D Q + L +G + L +WDL P KA+ T+
Sbjct: 279 SQCDIWYMRFSMDFWQ--------------KMLALGNQVGKLYVWDLEVEDPH-KAKCTT 323
Query: 438 -----SAPACYALAISPDSKVCFSCCSDGNIAVWD 467
A + S DS + + C D +I WD
Sbjct: 324 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 358
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 148 TPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTS-----S 202
T + + D Q D + + + L +G + L +WDL P KA+ T+
Sbjct: 271 TILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH-KAKCTTLTHHKC 329
Query: 203 APACYALAISPDSKVCFSCCSDGNIAVWD 231
A + S DS + + C D +I WD
Sbjct: 330 GAAIRQTSFSRDSSILIAVCDDASIWRWD 358
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 97/275 (35%), Gaps = 59/275 (21%)
Query: 214 DSKVCFSCCSDGNIAVWDLHNQTLVRQF---QGHTDGASCIDISADGTKLWTGGLDNTVR 270
D + S D + +W++ TLV F +GH D D G K+ + G+D++++
Sbjct: 126 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 185
Query: 271 SW-----DLREGCVKVWDISQPGSKTP-VSQL----DCLQRD---NYIRSVKLLPDGRTL 317
W + + +D + + P +SQ D RD NY+ V+ L D L
Sbjct: 186 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGD---L 242
Query: 318 IVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDI 377
I+ N A C+ D S + + +D
Sbjct: 243 ILSKSCEN--------------------AIVCWKPGKMEDDIDKIKPSESNVTILGRFDY 282
Query: 378 SQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTS 437
SQ +D Q + L +G + L +WDL P KA+ T+
Sbjct: 283 SQCDIWYMRFSMDFWQ--------------KMLALGNQVGKLYVWDLEVEDPH-KAKCTT 327
Query: 438 -----SAPACYALAISPDSKVCFSCCSDGNIAVWD 467
A + S DS + + C D +I WD
Sbjct: 328 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 362
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 148 TPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACY 207
T + + D Q D + + + L +G + L +WDL P T + C
Sbjct: 275 TILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCG 334
Query: 208 A----LAISPDSKVCFSCCSDGNIAVWD 231
A + S DS + + C D +I WD
Sbjct: 335 AAIRQTSFSRDSSILIAVCDDASIWRWD 362
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 99/275 (36%), Gaps = 59/275 (21%)
Query: 214 DSKVCFSCCSDGNIAVWDLHNQTLVRQF---QGHTDGASCIDISADGTKLWTGGLDNTVR 270
D + S D + +W++ TLV F +GH D D G K+ + G+D++++
Sbjct: 126 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 185
Query: 271 SW-----DLREGCVKVWDISQPGSKTP-VSQL----DCLQRD---NYIRSVKLLPDGRTL 317
W + + +D + + P +SQ D RD NY+ V+ L D L
Sbjct: 186 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGD---L 242
Query: 318 IVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDI 377
I+ N + +++ ++ P+ +S Y C DI
Sbjct: 243 ILSKSCENAIV---CWKPGKMEDDIDKIKPS--------ESNVTILGRFDYSQC----DI 287
Query: 378 SQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTS 437
T Q + L +G + L +WDL P KA+ T+
Sbjct: 288 WYMRFSTDFWQ-------------------KMLALGNQVGKLYVWDLEVEDPH-KAKCTT 327
Query: 438 -----SAPACYALAISPDSKVCFSCCSDGNIAVWD 467
A + S DS + + C D +I WD
Sbjct: 328 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 362
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 172 RTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYA----LAISPDSKVCFSCCSDGNI 227
+ L +G + L +WDL P T + C A + S DS + + C D +I
Sbjct: 299 KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASI 358
Query: 228 AVWD 231
WD
Sbjct: 359 WRWD 362
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 225 GNIAVWDLHN--QTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVW 282
++ W++ + QT+ + Q HT + S DG+K++T D T + WDL +
Sbjct: 64 NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN--QAI 121
Query: 283 DISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAEL 342
I+Q PV + ++ NY ++ G L WD S P + +L
Sbjct: 122 QIAQ--HDAPVKTIHWIKAPNY----------SCVMTGSWDKTLKFWDTRSSNPMMVLQL 169
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 82/237 (34%), Gaps = 26/237 (10%)
Query: 274 LREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLAS 333
L G V++W+ +T V + +R+ K + +IVG + + +++ +
Sbjct: 32 LYSGRVELWNY-----ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
+ E A Y +I+ P+ S VK+W+ + +
Sbjct: 87 GEKVVDFE----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE----G 138
Query: 394 RDNYIRSVKLLP-DGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAIS-PDS 451
++++ V P D T G + +W L TP Y PD
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 452 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS----------CIDISADGT-KLW 497
+ D I +WD ++ V +GH S I S DGT K+W
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 9/173 (5%)
Query: 105 RQINTLSHGEVVCAVTISNPTK-YVYTGGKG-CVKVWDISQPGSKTPVSQLDCLQRDNYI 162
+ ++ +H + + ++ + +PTK YV +G VK+W+ + + ++++
Sbjct: 89 KVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWNWENNWALEQTFE----GHEHFV 143
Query: 163 RSVKLLP-DGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAIS-PDSKVCFS 220
V P D T G + +W L TP Y PD +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 221 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
D I +WD ++ V +GH S + +G D T++ W+
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 23/230 (10%)
Query: 224 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWD 283
D I V++ + V F+ H D I + + +G D TV+ W+ W
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN----WA 131
Query: 284 ISQPGSKTPVSQLDCLQRDNYIRSVKLLP-DGRTLIVGGEASNLSIWDLASPTPRIKAEL 342
+ Q ++++ V P D T G + +W L TP
Sbjct: 132 LEQTFEG----------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 343 TSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 402
Y + P P+ + +K+WD +K+ V+ L+ + +
Sbjct: 182 GQERGVNY-VDYYPLPDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSN--VSFAV 235
Query: 403 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSK 452
P +I G E L IW+ S T +++ L + +A P +
Sbjct: 236 FHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLERSWCIATHPTGR 283
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 82/237 (34%), Gaps = 26/237 (10%)
Query: 274 LREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLAS 333
L G V++W+ +T V + +R+ K + +IVG + + +++ +
Sbjct: 32 LYSGRVELWNY-----ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
+ E A Y +I+ P+ S VK+W+ + +
Sbjct: 87 GEKVVDFE----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE----G 138
Query: 394 RDNYIRSVKLLP-DGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAIS-PDS 451
++++ V P D T G + +W L TP Y PD
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 452 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS----------CIDISADGT-KLW 497
+ D I +WD ++ V +GH S I S DGT K+W
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 9/173 (5%)
Query: 105 RQINTLSHGEVVCAVTISNPTK-YVYTGGKG-CVKVWDISQPGSKTPVSQLDCLQRDNYI 162
+ ++ +H + + ++ + +PTK YV +G VK+W+ + + ++++
Sbjct: 89 KVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWNWENNWALEQTFE----GHEHFV 143
Query: 163 RSVKLLP-DGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAIS-PDSKVCFS 220
V P D T G + +W L TP Y PD +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 221 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
D I +WD ++ V +GH S + +G D T++ W+
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 23/230 (10%)
Query: 224 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWD 283
D I V++ + V F+ H D I + + +G D TV+ W+ W
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN----WA 131
Query: 284 ISQPGSKTPVSQLDCLQRDNYIRSVKLLP-DGRTLIVGGEASNLSIWDLASPTPRIKAEL 342
+ Q ++++ V P D T G + +W L TP
Sbjct: 132 LEQTFEG----------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 343 TSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 402
Y + P P+ + +K+WD +K+ V+ L+ + +
Sbjct: 182 GQERGVNY-VDYYPLPDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSN--VSFAV 235
Query: 403 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSK 452
P +I G E L IW+ S T +++ L + +A P +
Sbjct: 236 FHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLERSWCIATHPTGR 283
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 151 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLS------------IWDLASPTPRIKAE 198
SQ + N IRSVK P G L + ++++ I L+ PT +A
Sbjct: 235 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 294
Query: 199 LTSSAPACYALAISPDSKVCFSCCS--DGNIAVWDLHNQTLVRQFQGHTDGASCIDISAD 256
L A + + +++S + C + DG + WD+ + + H D I+I D
Sbjct: 295 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD---IEIEED 351
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 387 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLS------------IWDLASPTPRIKAE 434
SQ + N IRSVK P G L + ++++ I L+ PT +A
Sbjct: 235 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 294
Query: 435 LTSSAPACYALAISPDSKVCFSCCS--DGNIAVWDLHNQTLVRQFQGHTDGASCIDISAD 492
L A + + +++S + C + DG + WD+ + + H D I+I D
Sbjct: 295 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD---IEIEED 351
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 30/146 (20%)
Query: 248 ASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV----SQLDCLQRDN 303
A+ +DIS G L G +N G V+ IS+ + P+ SQ + N
Sbjct: 199 ATSVDISERG--LIATGFNN---------GTVQ---ISELSTLRPLYNFESQHSMINNSN 244
Query: 304 YIRSVKLLPDGRTLIVGGEASNLS------------IWDLASPTPRIKAELTSSAPACYA 351
IRSVK P G L + ++++ I L+ PT +A L A + +
Sbjct: 245 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV 304
Query: 352 LAISPDSKSPFFSSHHYKSCVKVWDI 377
+++S + S + ++ WD+
Sbjct: 305 MSLSFNDSGETLCSAGWDGKLRFWDV 330
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 151 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLS------------IWDLASPTPRIKAE 198
SQ + N IRSVK P G L + ++++ I L+ PT +A
Sbjct: 225 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 284
Query: 199 LTSSAPACYALAISPDSKVCFSCCS--DGNIAVWDLHNQTLVRQFQGHTDGASCIDISAD 256
L A + + +++S + C + DG + WD+ + + H D I+I D
Sbjct: 285 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD---IEIEED 341
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 387 SQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLS------------IWDLASPTPRIKAE 434
SQ + N IRSVK P G L + ++++ I L+ PT +A
Sbjct: 225 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 284
Query: 435 LTSSAPACYALAISPDSKVCFSCCS--DGNIAVWDLHNQTLVRQFQGHTDGASCIDISAD 492
L A + + +++S + C + DG + WD+ + + H D I+I D
Sbjct: 285 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD---IEIEED 341
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 30/146 (20%)
Query: 248 ASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPV----SQLDCLQRDN 303
A+ +DIS G L G +N G V+ IS+ + P+ SQ + N
Sbjct: 189 ATSVDISERG--LIATGFNN---------GTVQ---ISELSTLRPLYNFESQHSMINNSN 234
Query: 304 YIRSVKLLPDGRTLIVGGEASNLS------------IWDLASPTPRIKAELTSSAPACYA 351
IRSVK P G L + ++++ I L+ PT +A L A + +
Sbjct: 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV 294
Query: 352 LAISPDSKSPFFSSHHYKSCVKVWDI 377
+++S + S + ++ WD+
Sbjct: 295 MSLSFNDSGETLCSAGWDGKLRFWDV 320
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 15/175 (8%)
Query: 107 INTLSH---GEVVCAVTISNPTKYVYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIR 163
IN +H G + V + K+V G KG + V+ I++ KTP +L + I
Sbjct: 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITE---KTPTGKL--IGHHGPIS 251
Query: 164 SVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 223
++ + L+ + L IW + + + + + + D KV SC
Sbjct: 252 VLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ--NCFYGHSQSIVSASWVGDDKV-ISCSM 308
Query: 224 DGNIAVWDLHNQTLVRQFQGHTDGASCI--DISADGTKLWTGGLDNTVRSWDLRE 276
DG++ +W L TL+ DG IS DG K +D V +DL++
Sbjct: 309 DGSVRLWSLKQNTLLA--LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 82/237 (34%), Gaps = 26/237 (10%)
Query: 274 LREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLAS 333
L G V++W+ +T V + +R+ K + +IVG + + +++ +
Sbjct: 32 LYSGRVELWNY-----ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
+ E A Y +I+ P+ S VK+W+ + +
Sbjct: 87 GEKVVDFE----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE----G 138
Query: 394 RDNYIRSVKLLP-DGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAI-SPDS 451
++++ V P D T G + +W L TP Y PD
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 452 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS----------CIDISADGT-KLW 497
+ D I +WD ++ V +GH S I S DGT K+W
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 97/265 (36%), Gaps = 31/265 (11%)
Query: 105 RQINTLSHGEVVCAVTISNPTK-YVYTGGKGC-VKVWDISQPGSKTPVSQLDCLQRDNYI 162
+ ++ +H + + ++ + +PTK YV +G VK+W+ + + ++++
Sbjct: 89 KVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWNWENNWALEQTFE----GHEHFV 143
Query: 163 RSVKLLP-DGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAI-SPDSKVCFS 220
V P D T G + +W L TP Y PD +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 221 CCSDGNIAVWDLHNQTLVRQFQGHTDGAS----------CIDISADGT-KLWTGGLDNTV 269
D I +WD ++ V +GH S I S DGT K+W
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Query: 270 RSWDLREGCVKVWDISQ--PGSKTPVSQ-----LDCLQRDNYIRSVKLLPDGRTLIVGGE 322
++ L G + W I+ G K ++ L N ++ L P G+ + GG+
Sbjct: 264 KT--LNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGK 321
Query: 323 ASNLSIWDLASPTPRIKAELTSSAP 347
+ S D+ + R E+ P
Sbjct: 322 NAAAS--DIFTAVIRGNEEVEQDEP 344
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 23/230 (10%)
Query: 224 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWD 283
D I V++ + V F+ H D I + + +G D TV+ W+ W
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN----WA 131
Query: 284 ISQPGSKTPVSQLDCLQRDNYIRSVKLLP-DGRTLIVGGEASNLSIWDLASPTPRIKAEL 342
+ Q ++++ V P D T G + +W L TP
Sbjct: 132 LEQTFEG----------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 343 TSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 402
Y + P P+ + +K+WD +K+ V+ L+ + +
Sbjct: 182 GQERGVNY-VDYYPLPDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSN--VSFAV 235
Query: 403 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSK 452
P +I G E L IW+ S T +++ L + +A P +
Sbjct: 236 FHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLERSWCIATHPTGR 283
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 82/237 (34%), Gaps = 26/237 (10%)
Query: 274 LREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLAS 333
L G V++W+ +T V + +R+ K + +IVG + + +++ +
Sbjct: 32 LYSGRVEIWNY-----ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86
Query: 334 PTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQ 393
+ E A Y +I+ P+ S VK+W+ + +
Sbjct: 87 GEKVVDFE----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE----G 138
Query: 394 RDNYIRSVKLLP-DGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAI-SPDS 451
++++ V P D T G + +W L TP Y PD
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 452 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS----------CIDISADGT-KLW 497
+ D I +WD ++ V +GH S I S DGT K+W
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 9/173 (5%)
Query: 105 RQINTLSHGEVVCAVTISNPTK-YVYTGGKGC-VKVWDISQPGSKTPVSQLDCLQRDNYI 162
+ ++ +H + + ++ + +PTK YV +G VK+W+ + + ++++
Sbjct: 89 KVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWNWENNWALEQTFE----GHEHFV 143
Query: 163 RSVKLLP-DGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAI-SPDSKVCFS 220
V P D T G + +W L TP Y PD +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 221 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
D I +WD ++ V +GH S + +G D T++ W+
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 23/230 (10%)
Query: 224 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWD 283
D I V++ + V F+ H D I + + +G D TV+ W+ W
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN----WA 131
Query: 284 ISQPGSKTPVSQLDCLQRDNYIRSVKLLP-DGRTLIVGGEASNLSIWDLASPTPRIKAEL 342
+ Q ++++ V P D T G + +W L TP
Sbjct: 132 LEQTFEG----------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 343 TSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 402
Y + P P+ + +K+WD +K+ V+ L+ + +
Sbjct: 182 GQERGVNY-VDYYPLPDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSN--VSFAV 235
Query: 403 LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSK 452
P +I G E L IW+ S T +++ L + +A P +
Sbjct: 236 FHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLERSWCIATHPTGR 283
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 19/133 (14%)
Query: 220 SCCSDGNIAVWDLHNQTLVR---QFQGHTDGASCIDIS-ADGTKLWTGGLDNTVRSWDLR 275
S D + +WD + T + HT +C+ + L TG D TV WDLR
Sbjct: 247 SVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 276 EGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIV-GGEASNLSIWDLASP 334
+K+ T S D I V P T++ G L++WDL+
Sbjct: 307 NLKLKL--------HTFESHKD------EIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 335 TPRIKAELTSSAP 347
AE P
Sbjct: 353 GEEQSAEDAEDGP 365
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 19/133 (14%)
Query: 220 SCCSDGNIAVWDLHNQTLVR---QFQGHTDGASCIDIS-ADGTKLWTGGLDNTVRSWDLR 275
S D + +WD + T + HT +C+ + L TG D TV WDLR
Sbjct: 247 SVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 276 EGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIV-GGEASNLSIWDLASP 334
+K+ T S D I V P T++ G L++WDL+
Sbjct: 307 NLKLKL--------HTFESHKD------EIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 335 TPRIKAELTSSAP 347
AE P
Sbjct: 353 GEEQSAEDAEDGP 365
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 9/118 (7%)
Query: 126 KYVYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSI 185
+++ +G +KV D S + + Q + I +K P G LI + L I
Sbjct: 111 RFILGTTEGDIKVLD-SNFNLQREIDQAHVSE----ITKLKFFPSGEALISSSQDMQLKI 165
Query: 186 WDLAS-PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 242
W + PR L +AI + S DG I +W+ T + F
Sbjct: 166 WSVKDGSNPRT---LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 172 RTLIVGGEASNLSIWDLASPTPRIKAELTSS-APACYALAISPDSKVCFSCCSDGNIAVW 230
R I+G ++ + D ++ E+ + L P + S D + +W
Sbjct: 110 RRFILGTTEGDIKVLD---SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 166
Query: 231 DLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
+ + + R GH + I I G + + LD T+R W+
Sbjct: 167 SVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLAS-PTPRIKAELTSSAPACYALAISPDSKVCFS 456
I +K P G LI + L IW + PR L +AI + S
Sbjct: 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT---LIGHRATVTDIAIIDRGRNVLS 198
Query: 457 CCSDGNIAVWDLHNQTLVRQFQ 478
DG I +W+ T + F
Sbjct: 199 ASLDGTIRLWECGTGTTIHTFN 220
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 44/133 (33%), Gaps = 19/133 (14%)
Query: 220 SCCSDGNIAVWDLHNQTLVR---QFQGHTDGASCIDIS-ADGTKLWTGGLDNTVRSWDLR 275
S D + +WD N + HT +C+ + L TG D TV WDLR
Sbjct: 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
Query: 276 EGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIV-GGEASNLSIWDLASP 334
+K+ + I V+ P T++ G L +WDL+
Sbjct: 309 NLKLKLHSFE--------------SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354
Query: 335 TPRIKAELTSSAP 347
E P
Sbjct: 355 GEEQSTEDAEDGP 367
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 44/133 (33%), Gaps = 19/133 (14%)
Query: 220 SCCSDGNIAVWDLHNQTLVR---QFQGHTDGASCIDIS-ADGTKLWTGGLDNTVRSWDLR 275
S D + +WD N + HT +C+ + L TG D TV WDLR
Sbjct: 251 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
Query: 276 EGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIV-GGEASNLSIWDLASP 334
+K+ + I V+ P T++ G L +WDL+
Sbjct: 311 NLKLKLHSFE--------------SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 356
Query: 335 TPRIKAELTSSAP 347
E P
Sbjct: 357 GEEQSTEDAEDGP 369
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 9/118 (7%)
Query: 126 KYVYTGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSI 185
+++ +G +KV D S + + Q + I +K P G LI + L I
Sbjct: 108 RFILGTTEGDIKVLD-SNFNLQREIDQAHVSE----ITKLKFFPSGEALISSSQDMQLKI 162
Query: 186 WDLAS-PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 242
W + PR L +AI + S DG I +W+ T + F
Sbjct: 163 WSVKDGSNPRT---LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 217
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 172 RTLIVGGEASNLSIWDLASPTPRIKAELTSS-APACYALAISPDSKVCFSCCSDGNIAVW 230
R I+G ++ + D ++ E+ + L P + S D + +W
Sbjct: 107 RRFILGTTEGDIKVLD---SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 163
Query: 231 DLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
+ + + R GH + I I G + + LD T+R W+
Sbjct: 164 SVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLAS-PTPRIKAELTSSAPACYALAISPDSKVCFS 456
I +K P G LI + L IW + PR L +AI + S
Sbjct: 139 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT---LIGHRATVTDIAIIDRGRNVLS 195
Query: 457 CCSDGNIAVWDLHNQTLVRQFQ 478
DG I +W+ T + F
Sbjct: 196 ASLDGTIRLWECGTGTTIHTFN 217
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 44/133 (33%), Gaps = 19/133 (14%)
Query: 220 SCCSDGNIAVWDLHNQTLVR---QFQGHTDGASCIDIS-ADGTKLWTGGLDNTVRSWDLR 275
S D + +WD N + HT +C+ + L TG D TV WDLR
Sbjct: 253 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 312
Query: 276 EGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIV-GGEASNLSIWDLASP 334
+K+ + I V+ P T++ G L +WDL+
Sbjct: 313 NLKLKLHSFE--------------SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 358
Query: 335 TPRIKAELTSSAP 347
E P
Sbjct: 359 GEEQSTEDAEDGP 371
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 220 SCCSDGN-IAVWDLHNQTLVRQFQGHTDGASCIDI--SADGTKL 260
+C DG I V+ N LVR+F+ D S ID+ S DG+KL
Sbjct: 196 TCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKL 239
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 456 SCCSDGN-IAVWDLHNQTLVRQFQGHTDGASCIDI--SADGTKL 496
+C DG I V+ N LVR+F+ D S ID+ S DG+KL
Sbjct: 196 TCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKL 239
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 162 IRSVKLLP-----------DGRTLIV----GGEASNLSIWDLASPTPRIKAELTSSAPAC 206
IR V LLP DGR + G+ N S A R+ + T+ A
Sbjct: 196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS-KRFAFRCHRLNLKDTNLAYPV 254
Query: 207 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 266
++ SP K ++ SDG I+ W+L + ++ F + S + I+ L D
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-SVVKIACSDNILCLATSD 313
Query: 267 NTVRS 271
+T ++
Sbjct: 314 DTFKT 318
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 13/168 (7%)
Query: 275 REGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDG-------RTLIVGGEASNLS 327
R+G VKVWD Q PV+ ++ +Q +N R + G R + G + ++
Sbjct: 137 RDGTVKVWDPRQKDD--PVANMEPVQGENK-RDCWTVAFGNAYNQEERVVCAGYDNGDIK 193
Query: 328 IWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVS 387
++DL + R + + + C D + + V+D+ +
Sbjct: 194 LFDLRNMALRWETNIKNG--VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFA 251
Query: 388 QLDCLQRDNYIRSVKLLPDGRTLIV-GGEASNLSIWDLASPTPRIKAE 434
+ + + V+ LP R L + G A L +W P R K +
Sbjct: 252 SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 162 IRSVKLLP-----------DGRTLIV----GGEASNLSIWDLASPTPRIKAELTSSAPAC 206
IR V LLP DGR + G+ N S A R+ + T+ A
Sbjct: 196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS-KRFAFRCHRLNLKDTNLAYPV 254
Query: 207 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 266
++ SP K ++ SDG I+ W+L + ++ F + S + I+ L D
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-SVVKIACSDNILCLATSD 313
Query: 267 NTVRS 271
+T ++
Sbjct: 314 DTFKT 318
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 162 IRSVKLLP-----------DGRTLIV----GGEASNLSIWDLASPTPRIKAELTSSAPAC 206
IR V LLP DGR + G+ N S A R+ + T+ A
Sbjct: 196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS-KRFAFRCHRLNLKDTNLAYPV 254
Query: 207 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 266
++ SP K ++ SDG I+ W+L + ++ F + S + I+ L D
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-SVVKIACSDNILCLATSD 313
Query: 267 NTVRS 271
+T ++
Sbjct: 314 DTFKT 318
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 162 IRSVKLLP-----------DGRTLIV----GGEASNLSIWDLASPTPRIKAELTSSAPAC 206
IR V LLP DGR + G+ N S A R+ + T+ A
Sbjct: 196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS-KRFAFRCHRLNLKDTNLAYPV 254
Query: 207 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLD 266
++ SP K ++ SDG I+ W+L + ++ F + S + I+ L D
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-SVVKIACSDNILCLATSD 313
Query: 267 NTVRS 271
+T ++
Sbjct: 314 DTFKT 318
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 19/118 (16%)
Query: 220 SCCSDGNIAVWDLHNQTLVR---QFQGHTDGASCIDIS-ADGTKLWTGGLDNTVRSWDLR 275
S D + +WD + + HT +C+ + L TG D TV WDLR
Sbjct: 245 SVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304
Query: 276 EGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIV-GGEASNLSIWDLA 332
+K+ + I V+ P T++ G L++WDL+
Sbjct: 305 NLKLKLHSFE--------------SHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 22/155 (14%)
Query: 136 VKVWDISQP-----------GSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLS 184
VK+WD+ + G K+ + + + + DG L+ G + +
Sbjct: 211 VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270
Query: 185 IWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-------GNIAVWDLHNQTL 237
+W+ ++ + L + C V C S+ IAV+ +++
Sbjct: 271 LWNSSNG----ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ 326
Query: 238 VRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSW 272
+ +GH C ++ +L++G D + +W
Sbjct: 327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|1RI6|A Chain A, Structure Of A Putative Isomerase From E. Coli
Length = 343
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 9/128 (7%)
Query: 292 PVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASN----LSIWDLASPTPRIKAELTSSAP 347
PV +D ++ + S + PD RTL V + ++ D + AE+T+
Sbjct: 118 PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG 177
Query: 348 ACYALAISPDSKSPFFSSHHYKSCVKVWDISQP-GSKTPVSQLDCLQRD----NYIRSVK 402
A + ++ + + S V VW++ P G+ V LD + + + +
Sbjct: 178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH 237
Query: 403 LLPDGRTL 410
+ PDGR L
Sbjct: 238 ITPDGRHL 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,828,519
Number of Sequences: 62578
Number of extensions: 719218
Number of successful extensions: 2527
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1460
Number of HSP's gapped (non-prelim): 457
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)