RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17188
(504 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 176 bits (449), Expect = 1e-51
Identities = 90/300 (30%), Positives = 128/300 (42%), Gaps = 28/300 (9%)
Query: 206 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGL 265
+A SPD K+ + DG I VWDL L+R +GHT + SADGT L +G
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS 71
Query: 266 DNTVRSWDLREG-CVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEAS 324
D T+R WDL G CV+ +Y+ SV PDGR L
Sbjct: 72 DKTIRLWDLETGECVRTL----------------TGHTSYVSSVAFSPDGRILSSSSRDK 115
Query: 325 NLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKT 384
+ +WD+ T + L ++A SPD F +S +K+WD+ +
Sbjct: 116 TIKVWDV--ETGKCLTTLRGHTDWVNSVAFSPDGT--FVASSSQDGTIKLWDLR---TGK 168
Query: 385 PVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYA 444
V+ L + SV PDG L+ + +WDL+ T + L +
Sbjct: 169 CVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS--TGKCLGTLRGHENGVNS 224
Query: 445 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
+A SPD + S DG I VWDL V+ GHT+ + + S DG +L +G D T
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284
Score = 143 bits (363), Expect = 4e-39
Identities = 87/310 (28%), Positives = 124/310 (40%), Gaps = 32/310 (10%)
Query: 160 NYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCF 219
+ V PDG+ L G + +WDL T + L +A S D
Sbjct: 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLE--TGELLRTLKGHTGPVRDVAASADGTYLA 67
Query: 220 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREG-C 278
S SD I +WDL VR GHT S + S DG L + D T++ WD+ G C
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127
Query: 279 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRI 338
+ +++ SV PDG + + + +WDL T +
Sbjct: 128 LTTLR----------------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR--TGKC 169
Query: 339 KAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQR-DNY 397
A LT ++A SPD + SS +K+WD+S L L+ +N
Sbjct: 170 VATLTGHTGEVNSVAFSPDGEKLLSSSS--DGTIKLWDLSTG------KCLGTLRGHENG 221
Query: 398 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 457
+ SV PDG L G E + +WDL T L+ + +LA SPD K S
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLR--TGECVQTLSGHTNSVTSLAWSPDGKRLASG 279
Query: 458 CSDGNIAVWD 467
+DG I +WD
Sbjct: 280 SADGTIRIWD 289
Score = 124 bits (313), Expect = 3e-32
Identities = 77/268 (28%), Positives = 110/268 (41%), Gaps = 26/268 (9%)
Query: 237 LVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQL 296
L R +GHT G +C+ S DG L TG D T++ WDL G + +T
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL---------RTLKGHT 51
Query: 297 DCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISP 356
+R V DG L G + +WDL T LT ++A SP
Sbjct: 52 GP------VRDVAASADGTYLASGSSDKTIRLWDL--ETGECVRTLTGHTSYVSSVAFSP 103
Query: 357 DSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEA 416
D + SS +KVWD+ T +++ SV PDG + +
Sbjct: 104 DGR--ILSSSSRDKTIKVWDVETGKCLT-----TLRGHTDWVNSVAFSPDGTFVASSSQD 156
Query: 417 SNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 476
+ +WDL T + A LT ++A SPD + S SDG I +WDL +
Sbjct: 157 GTIKLWDLR--TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214
Query: 477 FQGHTDGASCIDISADGTKLWTGGLDNT 504
+GH +G + + S DG L +G D T
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGT 242
Score = 110 bits (277), Expect = 3e-27
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 112 HGEVVCAVTISNPTKYVYTGGK-GCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPD 170
H + V +V S +V + + G +K+WD+ + V+ L + SV PD
Sbjct: 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR---TGKCVATLT--GHTGEVNSVAFSPD 188
Query: 171 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 230
G L+ + +WDL+ T + L ++A SPD + S DG I VW
Sbjct: 189 GEKLLSSSSDGTIKLWDLS--TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246
Query: 231 DLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
DL V+ GHT+ + + S DG +L +G D T+R WD
Sbjct: 247 DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 100 bits (250), Expect = 1e-23
Identities = 60/220 (27%), Positives = 91/220 (41%), Gaps = 23/220 (10%)
Query: 112 HGEVVCAVTISNPTKYVYTGGK-GCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPD 170
H V +V S + + + + +KVWD+ T +++ SV PD
Sbjct: 92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-----TLRGHTDWVNSVAFSPD 146
Query: 171 GRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 230
G + + + +WDL T + A LT ++A SPD + S SDG I +W
Sbjct: 147 GTFVASSSQDGTIKLWDLR--TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
Query: 231 DLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSK 290
DL + +GH +G + + S DG L +G D T+R WDLR +
Sbjct: 205 DLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR-------------TG 251
Query: 291 TPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 330
V L N + S+ PDG+ L G + IWD
Sbjct: 252 ECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 136 bits (343), Expect = 4e-35
Identities = 106/406 (26%), Positives = 177/406 (43%), Gaps = 33/406 (8%)
Query: 105 RQINTLSHGEVVCAVTISNPTKYVYTGGKGC-VKVWDISQPGSKTPVSQLDCLQRDNYIR 163
+ H + + ++ S + + +G +K+WD+ + + L+ L + +
Sbjct: 57 SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLD--NGEKLIKSLEGLHDSSVSK 114
Query: 164 SVKLLPDGRTLIVGGEAS--NLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSC 221
PDG ++++ + + +WDL++P I+ S +LA SPD K+ S
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSES-VTSLAFSPDGKLLASG 173
Query: 222 CS-DGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTK-LWTGGLDNTVRSWDLREGCV 279
S DG I +WDL + GHTD S + S DG + +G D T+R WDL G +
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233
Query: 280 KVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIK 339
+S S + VS PDG L G + +WDL S + ++
Sbjct: 234 LRSTLSGH-SDSVVSSFS--------------PDGSLLASGSSDGTIRLWDLRSSSSLLR 278
Query: 340 AELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIR 399
S+ ++A SPD K S + V++WD+ + +S L + +
Sbjct: 279 TLSGHSSSVL-SVAFSPDGKL-LASGSSDGT-VRLWDLE---TGKLLSSLTLKGHEGPVS 332
Query: 400 SVKLLPDGRTLIVGGEASN-LSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC 458
S+ PDG L+ GG + +WDL + + +++ SPD +V S
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRT---GKPLKTLEGHSNVLSVSFSPDGRVVSSGS 389
Query: 459 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
+DG + +WDL +L+R GHT + +D S DG L +G DNT
Sbjct: 390 TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435
Score = 127 bits (320), Expect = 5e-32
Identities = 99/374 (26%), Positives = 144/374 (38%), Gaps = 37/374 (9%)
Query: 111 SHGEVVCAVTISNPTKYVY----TGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVK 166
H V + +S+P + G VK+WD+S PG + + S+
Sbjct: 107 LHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH----SESVTSLA 162
Query: 167 LLPDGRTLIVGGEA-SNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCS-D 224
PDG+ L G + +WDL + P + L +LA SPD + + S D
Sbjct: 163 FSPDGKLLASGSSLDGTIKLWDLRTGKP--LSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220
Query: 225 GNIAVWDLHNQTLVRQ-FQGHTDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWD 283
G I +WDL L+R GH+D S DG+ L +G D T+R WDLR +
Sbjct: 221 GTIRLWDLSTGKLLRSTLSGHSDS-VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279
Query: 284 ISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELT 343
+S S + SV PDG+ L G + +WDL + L
Sbjct: 280 LSGHSSS--------------VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325
Query: 344 SSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKL 403
+L+ SPD S +++WD+ L L+ + + SV
Sbjct: 326 GHEGPVSSLSFSPDGSL-LVSGGSDDGTIRLWDLRT------GKPLKTLEGHSNVLSVSF 378
Query: 404 LPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 463
PDGR + G + +WDL T + L +L SPD K S SD I
Sbjct: 379 SPDGRVVSSGSTDGTVRLWDL--STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTI 436
Query: 464 AVWDLHNQTLVRQF 477
+WDL F
Sbjct: 437 RLWDLKTSLKSVSF 450
Score = 126 bits (317), Expect = 1e-31
Identities = 93/363 (25%), Positives = 147/363 (40%), Gaps = 31/363 (8%)
Query: 149 PVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKA-ELTSSAPACY 207
+S L ++ I S+ PDG L+ G + +WDL + IK+ E +
Sbjct: 55 DLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSK 114
Query: 208 ALAISPDSKVCFSCCS--DGNIAVWDLHNQT-LVRQFQGHTDGASCIDISADGTKLWTGG 264
SPD S DG + +WDL L+R +GH++ + + S DG L +G
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS 174
Query: 265 -LDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEA 323
LD T++ WDLR G P+S L + + S+ PDG LI G +
Sbjct: 175 SLDGTIKLWDLRTG-------------KPLSTLAG--HTDPVSSLAFSPDGGLLIASGSS 219
Query: 324 SN-LSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQPGS 382
+ +WDL T ++ S + SPD +S +++WD+ S
Sbjct: 220 DGTIRLWDL--STGKLLRSTLSGHSDSVVSSFSPDGS--LLASGSSDGTIRLWDLRSSSS 275
Query: 383 KTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPAC 442
+ + SV PDG+ L G + +WDL + L
Sbjct: 276 LLRTLSGH----SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331
Query: 443 YALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISADGTKLWTGGL 501
+L+ SPD S + DG I +WDL ++ +GH++ + S DG + +G
Sbjct: 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGST 390
Query: 502 DNT 504
D T
Sbjct: 391 DGT 393
Score = 52.4 bits (124), Expect = 3e-07
Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 10/143 (6%)
Query: 101 PRHARQINTLSHGEVVCAVTISNPTKYVYTGGK--GCVKVWDISQPGSKTPVSQLDCLQR 158
+ + H V +++ S + +GG G +++WD+ L L+
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT------GKPLKTLEG 369
Query: 159 DNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKVC 218
+ + SV PDGR + G + +WDL T + L +L SPD K
Sbjct: 370 HSNVLSVSFSPDGRVVSSGSTDGTVRLWDL--STGSLLRNLDGHTSRVTSLDFSPDGKSL 427
Query: 219 FSCCSDGNIAVWDLHNQTLVRQF 241
S SD I +WDL F
Sbjct: 428 ASGSSDNTIRLWDLKTSLKSVSF 450
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 43.8 bits (104), Expect = 2e-06
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 234 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
+ L++ +GHT + + S DG L +G D T++ WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 35.8 bits (83), Expect = 0.002
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 470 NQTLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
+ L++ +GHT + + S DG L +G D T
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGT 35
Score = 35.4 bits (82), Expect = 0.002
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 231
+ + L ++A SPD K S DG I +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 35.4 bits (82), Expect = 0.002
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 428 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 467
+ + L ++A SPD K S DG I +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 29.6 bits (67), Expect = 0.27
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 159 DNYIRSVKLLPDGRTLIVGGEASNLSIWD 187
+ SV PDG+ L G + + +WD
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 29.6 bits (67), Expect = 0.27
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 302 DNYIRSVKLLPDGRTLIVGGEASNLSIWD 330
+ SV PDG+ L G + + +WD
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 29.6 bits (67), Expect = 0.27
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 395 DNYIRSVKLLPDGRTLIVGGEASNLSIWD 423
+ SV PDG+ L G + + +WD
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 43.5 bits (103), Expect = 3e-06
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 236 TLVRQFQGHTDGASCIDISADGTKLWTGGLDNTVRSWD 273
L+R +GHT + + S DG L +G D TVR WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 35.4 bits (82), Expect = 0.002
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 205 ACYALAISPDSKVCFSCCSDGNIAVWD 231
++A SPD + S DG + VWD
Sbjct: 13 PVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 35.4 bits (82), Expect = 0.002
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 441 ACYALAISPDSKVCFSCCSDGNIAVWD 467
++A SPD + S DG + VWD
Sbjct: 13 PVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 35.0 bits (81), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 472 TLVRQFQGHTDGASCIDISADGTKLWTGGLDNT 504
L+R +GHT + + S DG L +G D T
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGT 34
Score = 28.9 bits (65), Expect = 0.57
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 159 DNYIRSVKLLPDGRTLIVGGEASNLSIWD 187
+ SV PDG L G + + +WD
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 28.9 bits (65), Expect = 0.57
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 302 DNYIRSVKLLPDGRTLIVGGEASNLSIWD 330
+ SV PDG L G + + +WD
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 28.9 bits (65), Expect = 0.57
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 395 DNYIRSVKLLPDGRTLIVGGEASNLSIWD 423
+ SV PDG L G + + +WD
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 45.1 bits (106), Expect = 8e-05
Identities = 77/359 (21%), Positives = 133/359 (37%), Gaps = 46/359 (12%)
Query: 133 KGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPT 192
+G K S+ K + Q D L N + ++ DG G + I++ S
Sbjct: 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESI- 515
Query: 193 PRIKAELTSSAPACYALAISPDSKVCF---------SCCSDGNIAVWDLHNQTLVRQFQG 243
IK P + S S +C+ S +G + VWD+ LV + +
Sbjct: 516 --IKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE 573
Query: 244 HTDGASCIDI-SADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRD 302
H ID SAD T L +G D +V+ W + +G G+ + + C+Q
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-------SIGTIKTKANICCVQFP 626
Query: 303 NYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPF 362
+ GR+L G + +DL +P + + S Y + DS +
Sbjct: 627 S--------ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLV 676
Query: 363 FSSHHYKSCVKVWDISQPGSKTPVSQLDCLQRDNYIRS-VKLLPDGRTLIVGGEASNLSI 421
SS + +K+WD+S S + L +++ V L + G E + + +
Sbjct: 677 SSS--TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFV 734
Query: 422 WDLASPTPRIKAELTSSAPACYALAISPDSKVCFSCC------------SDGNIAVWDL 468
+ A P P + + + P L + S+ S C S GNI + ++
Sbjct: 735 YHKAFPMPVLSYKFKTIDPVS-GLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792
Score = 33.5 bits (76), Expect = 0.27
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 24/188 (12%)
Query: 326 LSIWDLASPTPRIKAELTSSAPACYALAISPDSKSP-FFSSHHYKSCVKVWDISQP---G 381
+ +WD+A ++ E+ +++ S S P +S VK+W I+Q G
Sbjct: 557 VQVWDVARS--QLVTEMKEHEKRVWSIDYS--SADPTLLASGSDDGSVKLWSINQGVSIG 612
Query: 382 SKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAPA 441
+ + + C+Q + GR+L G + +DL +P + + S
Sbjct: 613 TIKTKANICCVQFPS--------ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV 664
Query: 442 CYALAISPDSKVCFSCCSDGNIAVWDLH------NQTLVRQFQGHTDGASCIDISADGTK 495
Y + DS S +D + +WDL N+T + F GHT+ + + +S
Sbjct: 665 SYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY 722
Query: 496 LWTGGLDN 503
+ TG N
Sbjct: 723 IATGSETN 730
Score = 30.1 bits (67), Expect = 3.3
Identities = 43/194 (22%), Positives = 67/194 (34%), Gaps = 13/194 (6%)
Query: 321 GEASNLSIWDLASPTPRIKAELTSSAPACYALAISPDSKSPFFSSHHYKSCVKVWDISQP 380
E + S R + + S PA DS+ + + K S+
Sbjct: 409 AEKPLARYYSALSENGRSSEKSSMSNPAKPPDFYINDSRQGGWIDPFLEGLCKYLSFSKL 468
Query: 381 GSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSSAP 440
K + Q D L N + ++ DG G + I++ S IK P
Sbjct: 469 RVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESI---IKDGRDIHYP 525
Query: 441 ACYALAISPDSKVCF---------SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI-S 490
+ S S +C+ S +G + VWD+ LV + + H ID S
Sbjct: 526 VVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS 585
Query: 491 ADGTKLWTGGLDNT 504
AD T L +G D +
Sbjct: 586 ADPTLLASGSDDGS 599
>gnl|CDD|227601 COG5276, COG5276, Uncharacterized conserved protein [Function
unknown].
Length = 370
Score = 43.7 bits (103), Expect = 1e-04
Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 24/179 (13%)
Query: 279 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPT-PR 337
+++ DIS P S T + L+ D Y V + G V I D++ P+ P+
Sbjct: 108 LRIVDISTPDSPTLIGFLNT---DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162
Query: 338 IKAELTSSAPACYALAISPDSKSPFFSSHHYKSC----VKVWDISQPGSKTPVSQLDCLQ 393
+ + +AIS + Y + + + D+S P S + +
Sbjct: 163 LAGRYALPGGDTHDVAISGNYA--------YVAWRDGGLTIVDVSNPHSPVLIGSYNT-- 212
Query: 394 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPT-PRIKAELTSSAPACYALAISPDS 451
SV + + L+V E + I D++ P+ P + +S P +
Sbjct: 213 -GPGTYSVSVSDNRAYLVVYDEG--VLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGE 268
Score = 35.6 bits (82), Expect = 0.048
Identities = 49/267 (18%), Positives = 81/267 (30%), Gaps = 70/267 (26%)
Query: 127 YVY-TGGKGCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSI 185
YVY +++ DIS P S T + L+ D Y V + G V I
Sbjct: 98 YVYVADWSSGLRIVDISTPDSPTLIGFLNT---DGYAYGVYV--SGNYAYVADLDDGFLI 152
Query: 186 WDLASPT-PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 244
D++ P+ P++ + +AIS G+
Sbjct: 153 VDVSDPSSPQLAGRYALPGGDTHDVAIS------------------------------GN 182
Query: 245 TDGASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSKTPVSQLDCLQRDNY 304
+ GGL + D+S P S + +
Sbjct: 183 YAYVAW----------RDGGL--------------TIVDVSNPHSPVLIGSYNT---GPG 215
Query: 305 IRSVKLLPDGRTLIVGGEASNLSIWDLASPT-PRIKAELTSSAPACYALAISPDSKSPFF 363
SV + + L+V E + I D++ P+ P + +S P + +
Sbjct: 216 TYSVSVSDNRAYLVVYDEG--VLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVA 273
Query: 364 SSHHYKSCVKVWDISQPGSKTPVSQLD 390
+ + DIS P S S LD
Sbjct: 274 DGAKG---LPIIDISNPPSPFLSSSLD 297
Score = 31.0 bits (70), Expect = 1.4
Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 13/140 (9%)
Query: 370 SCVKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPT- 428
S +++ DIS P S T + L+ D Y V + G V I D++ P+
Sbjct: 106 SGLRIVDISTPDSPTLIGFLNT---DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160
Query: 429 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL---HNQTLV--RQFQGHTDG 483
P++ + +AIS + + DG + + D+ H+ L+ T
Sbjct: 161 PQLAGRYALPGGDTHDVAISGNY--AYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYS 218
Query: 484 ASCIDISADGTKLWTGGLDN 503
S D A G L
Sbjct: 219 VSVSDNRAYLVVYDEGVLIV 238
>gnl|CDD|220674 pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This
entry contains bacterial 6-phosphogluconolactonases
(6PGL)YbhE-type (EC:3.1.1.31) which hydrolyse
6-phosphogluconolactone to 6-phosphogluconate. The entry
also contains the fungal muconate lactonising enzyme
carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and
muconate cycloisomerase (EC:5.5.1.1), which convert
cis,cis-muconates to muconolactones and vice versa as
part of the microbial beta-ketoadipate pathway.
Structures of proteins in this family have revealed a
7-bladed beta-propeller fold.
Length = 344
Score = 38.7 bits (91), Expect = 0.005
Identities = 52/251 (20%), Positives = 91/251 (36%), Gaps = 45/251 (17%)
Query: 106 QINT-LSHGEVVCAVTISNPTKYVYTG--GKGCVKVWDISQPGSKTPVSQLDCL------ 156
+N + G C +++ ++++ G G V V+ + GS SQ+
Sbjct: 77 LLNQVPTGGASPCHLSVDPDGRFLFVANYGGGSVSVYPLDADGSLGEASQVVQHEGSGPN 136
Query: 157 ---QRDNYIRSVKLLPDGRTLIV---GGEASNLSIWDLASPTPRIKAELTSSAPACYA-- 208
Q + SV L PDG+ L+V G + ++ L ++ + P
Sbjct: 137 PERQEGPHAHSVVLTPDGKFLVVPDLG--TDRVRVYRLDDAGGKLTEPASVKTPPGSGPR 194
Query: 209 -LAISPDSKVCFSCCS-DGNIAVWDLHNQ-----------TLVRQFQGHTDGASCIDISA 255
L PD K + + V TL F G GA+ I IS
Sbjct: 195 HLVFHPDGKYAYVVNELSSTVTVLSYDPATGTFTELQTVSTLPEDFTGTN-GAAAIRISP 253
Query: 256 DGTKLWTGGLDNTVRSWDLREGCVKVWDISQPGSK-TPVSQLDCLQRDNYIRSVKLLPDG 314
DG L+ + R D + V+ + + G T V ++ ++ R + P G
Sbjct: 254 DGRFLYV-----SNRGHDS----IAVFAVDEAGGTLTLVERVST--EGDFPRDFNIDPSG 302
Query: 315 RTLIVGGEASN 325
+ L+V + S+
Sbjct: 303 KFLLVANQDSD 313
Score = 35.3 bits (82), Expect = 0.057
Identities = 62/307 (20%), Positives = 117/307 (38%), Gaps = 51/307 (16%)
Query: 145 GSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASN---LSIWDLASPTPRIK---AE 198
G+ TP+ + L +Y + + PDG+TL E +S + + T ++
Sbjct: 25 GALTPLGLVAELGNPSY---LAVSPDGKTLYAVNETGEDGGVSAFRIDPDTGKLTLLNQV 81
Query: 199 LTSSAPACYALAISPDSKVCFSCC-SDGNIAVWDLHNQ---TLVRQFQGHTDG------- 247
T A C+ L++ PD + F G+++V+ L Q H
Sbjct: 82 PTGGASPCH-LSVDPDGRFLFVANYGGGSVSVYPLDADGSLGEASQVVQHEGSGPNPERQ 140
Query: 248 ----ASCIDISADGTKLWTGGLDNTVRSWDLREGCVKVWDIS-QPGSKTPVSQLDCLQRD 302
A + ++ DG L DL V+V+ + G T + +
Sbjct: 141 EGPHAHSVVLTPDGKFLVVP---------DLGTDRVRVYRLDDAGGKLTEPASVK-TPPG 190
Query: 303 NYIRSVKLLPDGRTLIVGGE-ASNLSIWDLASPTPRIKA-ELTSSAPACY-------ALA 353
+ R + PDG+ V E +S +++ T + S+ P + A+
Sbjct: 191 SGPRHLVFHPDGKYAYVVNELSSTVTVLSYDPATGTFTELQTVSTLPEDFTGTNGAAAIR 250
Query: 354 ISPDSKSPF-FSSHHYKSCVKVWDISQPGSK-TPVSQLDCLQRDNYIRSVKLLPDGRTLI 411
ISPD + F + S+ + V+ + + G T V ++ ++ R + P G+ L+
Sbjct: 251 ISPDGR--FLYVSNRGHDSIAVFAVDEAGGTLTLVERVST--EGDFPRDFNIDPSGKFLL 306
Query: 412 VGGEASN 418
V + S+
Sbjct: 307 VANQDSD 313
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 32.6 bits (74), Expect = 0.52
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 198 ELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISAD 256
L ++ P + V S +D + VWD+ V + H+D + ++ + D
Sbjct: 120 HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179
Query: 257 GTKLWTGGLDNTVRSWDLREGCV 279
G+ L T D + D R+G +
Sbjct: 180 GSLLCTTSKDKKLNIIDPRDGTI 202
>gnl|CDD|182353 PRK10280, PRK10280, dipeptidyl carboxypeptidase II; Provisional.
Length = 681
Score = 32.1 bits (73), Expect = 0.82
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 7 YPHYLGGASPHEIQAAAAAGAYGALHNN-LPPSLNAYPRPPL 47
H L G S EI AA A L N L P LN +P L
Sbjct: 189 DIHQLAGLSEQEIALAAEAAREKGLDNRWLIPLLNTTQQPAL 230
>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional.
Length = 416
Score = 30.4 bits (68), Expect = 2.4
Identities = 25/121 (20%), Positives = 35/121 (28%), Gaps = 15/121 (12%)
Query: 16 PHEIQAAAAAGAYGALHNNLPPSLNAYPRPPLVGYDPHSQMRAPLGPASLAGIPGGKPAY 75
GA G R G +P P PA A P G P
Sbjct: 285 AKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPG---PPRPAPDADRPEGWP-- 339
Query: 76 SYHVTTDGQMQPVPFPPDALIGPGIPRHARQI--NTLSHGEVVCAVTISNPTKYVYTGGK 133
++ + FPP P +PR I ++ + C +VYT +
Sbjct: 340 --------SLEAITFPPPTPATPAVPRARPVIVGTGIAAAAIACVAAAGAVAYFVYTRRR 391
Query: 134 G 134
G
Sbjct: 392 G 392
>gnl|CDD|237984 cd00017, ANATO, Anaphylatoxin homologous domain; C3a, C4a and C5a
anaphylatoxins are protein fragments generated
enzymatically in serum during activation of complement
molecules C3, C4, and C5. They induce smooth muscle
contraction. These fragments are homologous to repeats
in fibulins.
Length = 70
Score = 27.4 bits (61), Expect = 3.4
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 214 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 252
K CC DG + QT + TDG C
Sbjct: 10 KDKELRKCCLDGMR--ENPMGQTCEERAAYITDGKECRK 46
Score = 27.4 bits (61), Expect = 3.4
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 450 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 488
K CC DG + QT + TDG C
Sbjct: 10 KDKELRKCCLDGMR--ENPMGQTCEERAAYITDGKECRK 46
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 29.9 bits (67), Expect = 4.1
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 39/143 (27%)
Query: 215 SKVCFSC---CSDGNIAV-WD-----------LHNQTL---VRQFQGHTDGASCIDISAD 256
S+V SC CS G +AV W+ L NQ V + +GHT +S +D+ +
Sbjct: 26 SRVIDSCGIACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHT--SSILDLQFN 83
Query: 257 ---GTKLWTGGLDNTVRSWDLREGCVKVWDISQP-----GSKTPVSQLDCLQRDNYIRSV 308
L +G D T+R W++ V +I P G K +S +D + YI
Sbjct: 84 PCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI--- 140
Query: 309 KLLPDGRTLIVGGEASNLSIWDL 331
+ G S ++IWD+
Sbjct: 141 --------MCSSGFDSFVNIWDI 155
>gnl|CDD|225043 COG2132, SufI, Putative multicopper oxidases [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 451
Score = 29.4 bits (66), Expect = 4.9
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 31 LHNNLPPSLNAYP-----RPPLVGYDPHSQMRAPLGPASLAGIPGGKPA-YSYHVTTDGQ 84
L N L + + + G P +Q+ G P Y YH T GQ
Sbjct: 78 LTNRLLVDTSVHWHGLPVPGEMDGVPPLTQIPPGPGETPTYTFTQDVPGTYWYHPHTHGQ 137
Query: 85 MQ 86
+
Sbjct: 138 VY 139
>gnl|CDD|216201 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal
region. This family is an alignment of the region to
the N-terminal side of the active site. The Prosite
motif does not correspond to this Pfam entry.
Length = 348
Score = 29.2 bits (66), Expect = 6.0
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 136 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIV----GGEASNLSIWDLASP 191
+ V+D++ + V D D YI VK PD + L+ +L + D +
Sbjct: 158 LFVYDLASGKTVELVPPDDLSDADYYITRVKWTPDEKLLVQWLNRDQNVLDLVLVDTETG 217
Query: 192 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 230
+ E TS + F DG+ +W
Sbjct: 218 RTVVLLEETSDGW------VELHQDPVFL--RDGSGFLW 248
Score = 29.2 bits (66), Expect = 6.0
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 372 VKVWDISQPGSKTPVSQLDCLQRDNYIRSVKLLPDGRTLIV----GGEASNLSIWDLASP 427
+ V+D++ + V D D YI VK PD + L+ +L + D +
Sbjct: 158 LFVYDLASGKTVELVPPDDLSDADYYITRVKWTPDEKLLVQWLNRDQNVLDLVLVDTETG 217
Query: 428 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 466
+ E TS + F DG+ +W
Sbjct: 218 RTVVLLEETSDGW------VELHQDPVFL--RDGSGFLW 248
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.425
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,301,462
Number of extensions: 2373180
Number of successful extensions: 2194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2110
Number of HSP's successfully gapped: 49
Length of query: 504
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 403
Effective length of database: 6,457,848
Effective search space: 2602512744
Effective search space used: 2602512744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)