Query psy17189
Match_columns 95
No_of_seqs 109 out of 283
Neff 4.7
Searched_HMMs 46136
Date Sat Aug 17 00:07:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0656|consensus 99.7 3E-17 6.4E-22 131.5 4.3 83 3-87 11-106 (335)
2 KOG0655|consensus 99.6 7.1E-17 1.5E-21 130.6 2.2 68 15-84 101-170 (408)
3 KOG0654|consensus 99.1 2.4E-11 5.3E-16 98.3 1.2 72 17-88 93-166 (359)
4 KOG0653|consensus 99.0 1.6E-10 3.4E-15 93.1 2.4 67 18-87 118-186 (391)
5 PF00134 Cyclin_N: Cyclin, N-t 98.9 1.2E-09 2.5E-14 72.6 2.1 60 27-88 1-60 (127)
6 COG5024 Cyclin [Cell division 98.8 1.2E-09 2.5E-14 90.6 1.9 69 18-88 172-242 (440)
7 cd00043 CYCLIN Cyclin box fold 88.0 0.18 3.8E-06 30.0 0.3 31 58-88 1-31 (88)
8 smart00385 CYCLIN domain prese 79.2 0.61 1.3E-05 27.3 0.0 27 64-90 1-27 (83)
9 TIGR01873 cas_CT1978 CRISPR-as 66.7 2 4.2E-05 28.9 0.1 19 52-70 7-25 (87)
10 PRK11558 putative ssRNA endonu 60.3 3.1 6.6E-05 28.5 0.1 19 52-70 9-27 (97)
11 PF09707 Cas_Cas2CT1978: CRISP 59.3 2.8 6E-05 28.0 -0.2 19 52-70 7-25 (86)
12 PF15023 DUF4523: Protein of u 36.2 8.6 0.00019 28.7 -0.7 65 1-67 11-95 (166)
13 PF14823 Sirohm_synth_C: Siroh 32.7 13 0.00028 23.7 -0.3 20 53-77 27-46 (70)
14 PRK13702 replication protein; 32.1 20 0.00044 24.1 0.6 26 51-76 41-66 (85)
15 cd08757 SAM_PNT_ESE Sterile al 28.1 32 0.00069 21.6 1.0 27 59-85 7-33 (68)
16 KOG2387|consensus 23.3 83 0.0018 27.6 2.9 48 16-71 82-130 (585)
17 PF08114 PMP1_2: ATPase proteo 22.4 24 0.00051 21.0 -0.4 13 78-90 4-16 (43)
18 cd08203 SAM_PNT Sterile alpha 22.4 48 0.001 20.5 1.0 19 59-77 7-25 (66)
19 PF02543 CmcH_NodU: Carbamoylt 20.2 57 0.0012 26.4 1.3 30 58-87 146-176 (360)
20 PF04651 Pox_A12: Poxvirus A12 20.2 30 0.00065 26.4 -0.3 19 45-64 13-31 (189)
No 1
>KOG0656|consensus
Probab=99.67 E-value=3e-17 Score=131.48 Aligned_cols=83 Identities=30% Similarity=0.466 Sum_probs=75.4
Q ss_pred cccccCCCcccc--ccCCCCc-----------ccCCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhh
Q psy17189 3 LYCSENLNTDRC--TAGRDAT-----------MYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEV 69 (95)
Q Consensus 3 l~c~e~~~~~~~--rA~~DP~-----------l~~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEV 69 (95)
|+|+|. +.... +|..|++ ++.|+|++.+|+++|+. +.|+.+|+.++|++++|.||++.++||++|
T Consensus 11 l~c~E~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~e~~i~~ll~kEe~-~~p~~~~~~~~~~~~~~~~R~~A~~WIl~V 88 (335)
T KOG0656|consen 11 LLCHEE-STSDEQDRADNDESSTESSIPQLGFLLWDERVLANLLEKEEQ-HNPSLDYFLCVQKLILSSMRKQALDWILKV 88 (335)
T ss_pred cccCCC-CcccccccccCCcccccccccccccccccHHHHHHHHHHHHH-hCCCCchhhhcccccccHHHHHHHHHHHHH
Confidence 799994 44433 4888998 67789999999999999 999999999999999999999999999999
Q ss_pred hhccccccccccchhhhh
Q psy17189 70 SFPHIFHAFCLSGGAFLI 87 (95)
Q Consensus 70 cEE~~~~~e~l~~~~~~~ 87 (95)
|++|+|+++|++++++.+
T Consensus 89 ~~~~~~~~~~~~LA~NYl 106 (335)
T KOG0656|consen 89 CEEYNFEPLVFLLAMNYL 106 (335)
T ss_pred HHHhCCchHHHHHHHHHH
Confidence 999999999999999876
No 2
>KOG0655|consensus
Probab=99.63 E-value=7.1e-17 Score=130.57 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=59.1
Q ss_pred ccCCCCccc--CCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchh
Q psy17189 15 TAGRDATMY--TDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGA 84 (95)
Q Consensus 15 rA~~DP~l~--~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~ 84 (95)
|..+-|.+. +..+||.+|++.|++ |+.+.++... |+|++|.||+||.|||+||||.||+|+||||+++
T Consensus 101 r~splp~lswgn~~eVW~lM~kkee~-~l~~~~~l~q-Hpdlqp~mRaILlDWlmEVCEvykLHRETFyLAv 170 (408)
T KOG0655|consen 101 RLSPLPCLSWGNSKEVWLLMLKKEER-YLRDKHFLEQ-HPDLQPQMRAILLDWLMEVCEVYKLHRETFYLAV 170 (408)
T ss_pred cCCCCccccccCHHHHHHHHHccchh-hhhhhHHHhh-CCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344555554 567999999999999 9888766654 9999999999999999999999999999999987
No 3
>KOG0654|consensus
Probab=99.09 E-value=2.4e-11 Score=98.35 Aligned_cols=72 Identities=26% Similarity=0.279 Sum_probs=61.4
Q ss_pred CCCCcccC--CHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhhh
Q psy17189 17 GRDATMYT--DSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIF 88 (95)
Q Consensus 17 ~~DP~l~~--d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~~ 88 (95)
..||..+. -.++.+|+...|.+..+|.++||+.||+|++|.||+||+||++||.|||+..-++|+++++.+=
T Consensus 93 ~~dp~~c~~~~~~I~~~~r~~ei~~~rp~~~~~e~vq~d~t~smrgilvdwlvevsee~r~~~e~l~ls~~~~d 166 (359)
T KOG0654|consen 93 GEDPQMCLKIAAKIYNTLRVSDIKSERPLPSKFEFVQADITPSMRGILVDWLVEVSEEYRLTFETLYLSVNYRD 166 (359)
T ss_pred ccchHHHHHHHHHHhhcccccchhhccCcccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhheeecHHHHH
Confidence 35665553 2468888888886645799999999999999999999999999999999999999999998764
No 4
>KOG0653|consensus
Probab=99.00 E-value=1.6e-10 Score=93.13 Aligned_cols=67 Identities=28% Similarity=0.283 Sum_probs=56.4
Q ss_pred CCCcccC--CHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189 18 RDATMYT--DSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI 87 (95)
Q Consensus 18 ~DP~l~~--d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~ 87 (95)
.||.+.. -++++.++...|.. +.|.. |+ ..|++++..||.||+||++||+..|++..||||++|++|
T Consensus 118 ~~~~~~~ey~~di~~~l~~~e~~-~~p~~-~~-~~~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaVnli 186 (391)
T KOG0653|consen 118 SDPSMIVEYVQDIFEYLRQLELE-FLPLS-YD-ISQSEIRAKMRAILVDWLVEVHEKFGLSPETLYLAVNLI 186 (391)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHh-hCchh-hh-cccccccHHHHHHHHHHHHHhhhhcCcCHHHHHHHHHHH
Confidence 3444443 35899999999855 67875 55 459999999999999999999999999999999999987
No 5
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=98.85 E-value=1.2e-09 Score=72.60 Aligned_cols=60 Identities=27% Similarity=0.394 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhhh
Q psy17189 27 RVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIF 88 (95)
Q Consensus 27 rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~~ 88 (95)
+|+.+|++.|.+ +.|+.+|++. |+++++.+|.++++||.++|..+++..+|++.|++++=
T Consensus 1 ~i~~~~~~~e~~-~~~~~~~~~~-~~~~~~~~r~~~~~~i~~~~~~~~l~~~~~~~A~~~~d 60 (127)
T PF00134_consen 1 DIFRYLLEKELK-YKPNPDYLEQ-QPEITPEMRQIIIDWIIELCQRLKLSPETLHLAIYLFD 60 (127)
T ss_dssp HHHHHHHHHHHH-TTCCTTHGTG-TSSHHHHHHHHHHHHHHHHHHHTT-BHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HCcCcccccc-ChhcCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 589999999999 9999999974 88999999999999999999999999999999998763
No 6
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=98.83 E-value=1.2e-09 Score=90.56 Aligned_cols=69 Identities=25% Similarity=0.264 Sum_probs=62.2
Q ss_pred CCCcccC--CHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhhh
Q psy17189 18 RDATMYT--DSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIF 88 (95)
Q Consensus 18 ~DP~l~~--d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~~ 88 (95)
.||.... ..+|+++|++.|.. +.|+.+|+.+ |+.+...||+||+||++||+..++|-+|||++++++|=
T Consensus 172 ~d~~mv~Ey~~~Ife~l~k~e~~-~lp~~~yl~k-q~~~~~~mR~~Lv~wlvevH~~F~llpeTL~lainiiD 242 (440)
T COG5024 172 EDPLMVPEYASDIFEYLLKLELI-DLPNPNYLIK-QSLYEWSMRSILVDWLVEVHGKFGLLPETLFLAINIID 242 (440)
T ss_pred cCccchHHHHHHHHHHHHHHHHH-hcCcHHHHhh-cchhHHhHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 5665553 46899999999999 9999999876 99999999999999999999999999999999999874
No 7
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=88.05 E-value=0.18 Score=29.97 Aligned_cols=31 Identities=16% Similarity=0.061 Sum_probs=27.5
Q ss_pred chhhhhhhhhhhhhccccccccccchhhhhh
Q psy17189 58 MRKIVNSWMQEVSFPHIFHAFCLSGGAFLIF 88 (95)
Q Consensus 58 MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~~ 88 (95)
+|....+||.++|+..++.+++...+++++=
T Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~ 31 (88)
T cd00043 1 MRPTPLDFLRRVAKALGLSPETLTLAVNLLD 31 (88)
T ss_pred CcchHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5778899999999999999999999887753
No 8
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=79.22 E-value=0.61 Score=27.33 Aligned_cols=27 Identities=11% Similarity=0.034 Sum_probs=23.7
Q ss_pred hhhhhhhhccccccccccchhhhhhhc
Q psy17189 64 SWMQEVSFPHIFHAFCLSGGAFLIFCM 90 (95)
Q Consensus 64 dWmlEVcEE~~~~~e~l~~~~~~~~~~ 90 (95)
+||.++|+..+++.++...+++++=-+
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~ 27 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRF 27 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 699999999999999999999886443
No 9
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=66.69 E-value=2 Score=28.92 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=17.0
Q ss_pred ccCCccchhhhhhhhhhhh
Q psy17189 52 TEIKPYMRKIVNSWMQEVS 70 (95)
Q Consensus 52 ~dItP~MR~ILvdWmlEVc 70 (95)
+++-|+.|+-|+-||+||.
T Consensus 7 ~~vP~~lRG~Lt~wllEv~ 25 (87)
T TIGR01873 7 ENVPPRLRGRLALWLLEPR 25 (87)
T ss_pred ccCChhHhchhhhheeecC
Confidence 5788999999999999975
No 10
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=60.31 E-value=3.1 Score=28.53 Aligned_cols=19 Identities=26% Similarity=0.628 Sum_probs=17.1
Q ss_pred ccCCccchhhhhhhhhhhh
Q psy17189 52 TEIKPYMRKIVNSWMQEVS 70 (95)
Q Consensus 52 ~dItP~MR~ILvdWmlEVc 70 (95)
+++-|+.|+-|.-||+||.
T Consensus 9 ~~vP~~lRG~Lt~wllEv~ 27 (97)
T PRK11558 9 ENVPPRLRGRLAVWLLEVR 27 (97)
T ss_pred ccCChhHhhhhhhheEecC
Confidence 5788999999999999975
No 11
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=59.29 E-value=2.8 Score=28.00 Aligned_cols=19 Identities=21% Similarity=0.695 Sum_probs=16.9
Q ss_pred ccCCccchhhhhhhhhhhh
Q psy17189 52 TEIKPYMRKIVNSWMQEVS 70 (95)
Q Consensus 52 ~dItP~MR~ILvdWmlEVc 70 (95)
+++.|+.|+-|.-||+||.
T Consensus 7 ~~vP~~lRG~Ltrwl~Ei~ 25 (86)
T PF09707_consen 7 EAVPPRLRGFLTRWLLEIR 25 (86)
T ss_pred ecCChhHhchhhheeEecC
Confidence 5688999999999999974
No 12
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=36.20 E-value=8.6 Score=28.74 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=39.8
Q ss_pred CccccccCCCccccccCCCCcccCCHHHHHH-HHHhhhhCCCCCCCchhh------------------hccc-CCccchh
Q psy17189 1 MELYCSENLNTDRCTAGRDATMYTDSRVMEN-LITSEQHNGVPPVDYFVS------------------VQTE-IKPYMRK 60 (95)
Q Consensus 1 m~l~c~e~~~~~~~rA~~DP~l~~d~rVl~n-Ll~~E~~~y~P~~~Yf~~------------------VQ~d-ItP~MR~ 60 (95)
||+||+-+++.+. +--.||.+.+=.|||.. =+-.|.. -.|.++-+-. -++. -.|.|..
T Consensus 11 ~e~L~sykseeDk-~kce~~e~sglErIL~rhqlP~EI~-lTPkPs~mp~wKRk~~N~~~~gwKkc~lwkk~~kepPMsT 88 (166)
T PF15023_consen 11 MELLYSYKSEEDK-KKCENPEFSGLERILARHQLPKEIN-LTPKPSRMPLWKRKAINNASEGWKKCHLWKKNTKEPPMST 88 (166)
T ss_pred HHHHHHhccHHHH-hhhhCccchhHHHHHHHhhCchhhc-cCCCCcccchhhhhhhcccccceeeehhhcccCCCCCcee
Confidence 6788877666655 44468888887788764 2334443 4455533321 1221 2599999
Q ss_pred hhhhhhh
Q psy17189 61 IVNSWMQ 67 (95)
Q Consensus 61 ILvdWml 67 (95)
|++-|+-
T Consensus 89 IVVRWlk 95 (166)
T PF15023_consen 89 IVVRWLK 95 (166)
T ss_pred EEeehhh
Confidence 9999974
No 13
>PF14823 Sirohm_synth_C: Sirohaem biosynthesis protein C-terminal; PDB: 1KYQ_B.
Probab=32.71 E-value=13 Score=23.75 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=15.2
Q ss_pred cCCccchhhhhhhhhhhhhcccccc
Q psy17189 53 EIKPYMRKIVNSWMQEVSFPHIFHA 77 (95)
Q Consensus 53 dItP~MR~ILvdWmlEVcEE~~~~~ 77 (95)
++.-+| .||-.||+.+++++
T Consensus 27 ~~~~RM-----~Wm~~vcd~w~l~~ 46 (70)
T PF14823_consen 27 DGKRRM-----RWMSQVCDYWSLEE 46 (70)
T ss_dssp CHHHHH-----HHHHHHHHHHHHHH
T ss_pred hHHHHH-----HHHHHHhcccCHHH
Confidence 444555 49999999998864
No 14
>PRK13702 replication protein; Provisional
Probab=32.05 E-value=20 Score=24.14 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.8
Q ss_pred cccCCccchhhhhhhhhhhhhccccc
Q psy17189 51 QTEIKPYMRKIVNSWMQEVSFPHIFH 76 (95)
Q Consensus 51 Q~dItP~MR~ILvdWmlEVcEE~~~~ 76 (95)
+++|+-.....+.|+|.|.|++.|+.
T Consensus 41 Hkei~vfi~n~lK~~L~elc~~~glT 66 (85)
T PRK13702 41 HKEIKVFIQNPLKDKLMELCEEEGLT 66 (85)
T ss_pred hhhhheeecHHHHHHHHHHHHHcCCc
Confidence 66788888889999999999998875
No 15
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=28.06 E-value=32 Score=21.56 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=21.0
Q ss_pred hhhhhhhhhhhhhccccccccccchhh
Q psy17189 59 RKIVNSWMQEVSFPHIFHAFCLSGGAF 85 (95)
Q Consensus 59 R~ILvdWmlEVcEE~~~~~e~l~~~~~ 85 (95)
+.-|..|+.-++++|++..+.+..+-|
T Consensus 7 ~~~V~~Wl~w~~~e~~l~~~~i~~~~F 33 (68)
T cd08757 7 KNDVLEWLQFVAEQNKLDAECISFQKF 33 (68)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCcccc
Confidence 455789999999999999865555554
No 16
>KOG2387|consensus
Probab=23.35 E-value=83 Score=27.62 Aligned_cols=48 Identities=25% Similarity=0.562 Sum_probs=37.3
Q ss_pred cCCCCcccCCHHHHHHHHHhhhhCCCCCCCch-hhhcccCCccchhhhhhhhhhhhh
Q psy17189 16 AGRDATMYTDSRVMENLITSEQHNGVPPVDYF-VSVQTEIKPYMRKIVNSWMQEVSF 71 (95)
Q Consensus 16 A~~DP~l~~d~rVl~nLl~~E~~~y~P~~~Yf-~~VQ~dItP~MR~ILvdWmlEVcE 71 (95)
-..|-+|..- +|+++.++.|.+ .+|. ++|| |-|+.--.+.||...|+.
T Consensus 82 Lt~dNNITtG-Kiy~~Vi~kER~-----GdYLGKTVQ--vvPHiTdaIq~WiervA~ 130 (585)
T KOG2387|consen 82 LTRDNNITTG-KIYQHVIEKERR-----GDYLGKTVQ--VVPHITDAIQDWIERVAR 130 (585)
T ss_pred eeccCCcccc-hHHHHHHhhhhc-----cccccceeE--eccchhHHHHHHHHHHhc
Confidence 3456666653 899999999977 6897 4555 669999999999988874
No 17
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=22.41 E-value=24 Score=21.04 Aligned_cols=13 Identities=46% Similarity=1.122 Sum_probs=11.0
Q ss_pred ccccchhhhhhhc
Q psy17189 78 FCLSGGAFLIFCM 90 (95)
Q Consensus 78 e~l~~~~~~~~~~ 90 (95)
.|||+||-|.||.
T Consensus 4 s~lp~GVIlVF~l 16 (43)
T PF08114_consen 4 STLPGGVILVFCL 16 (43)
T ss_pred ccCCCCeeeehHH
Confidence 5899999998875
No 18
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=22.36 E-value=48 Score=20.50 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=16.4
Q ss_pred hhhhhhhhhhhhhcccccc
Q psy17189 59 RKIVNSWMQEVSFPHIFHA 77 (95)
Q Consensus 59 R~ILvdWmlEVcEE~~~~~ 77 (95)
+.-+..|+.-++.+|++.+
T Consensus 7 ~~~V~~Wl~w~~~~f~L~~ 25 (66)
T cd08203 7 KEHVLQWLEWAVKEFSLPP 25 (66)
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 3457899999999999997
No 19
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=20.22 E-value=57 Score=26.37 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=22.2
Q ss_pred chhhhhhhhhhhhhcccccc-ccccchhhhh
Q psy17189 58 MRKIVNSWMQEVSFPHIFHA-FCLSGGAFLI 87 (95)
Q Consensus 58 MR~ILvdWmlEVcEE~~~~~-e~l~~~~~~~ 87 (95)
.=++++.|+-...+..++.. -||.|||+|=
T Consensus 146 ~E~~v~~~~~~~~~~~g~~~~L~laGGvaLN 176 (360)
T PF02543_consen 146 LEEIVLHLVRHLLERTGIDNNLCLAGGVALN 176 (360)
T ss_dssp HHHHHHHHHHHHHHHHT--SEEEEESGGGG-
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEechHHHH
Confidence 34566777777889999999 9999999984
No 20
>PF04651 Pox_A12: Poxvirus A12 protein; InterPro: IPR006744 This family contains vaccinia virus protein A12 and its homologues. VVA12 is a virion protein though its function is unknown.
Probab=20.20 E-value=30 Score=26.42 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=15.8
Q ss_pred CchhhhcccCCccchhhhhh
Q psy17189 45 DYFVSVQTEIKPYMRKIVNS 64 (95)
Q Consensus 45 ~Yf~~VQ~dItP~MR~ILvd 64 (95)
+|++++++ |+|..|.||+.
T Consensus 13 DYIeTinK-itPQLrtlLah 31 (189)
T PF04651_consen 13 DYIETINK-ITPQLRTLLAH 31 (189)
T ss_pred HHHHHHHH-hCHHHHHHHHH
Confidence 68888664 99999999974
Done!