Query psy17189
Match_columns 95
No_of_seqs 109 out of 283
Neff 4.7
Searched_HMMs 29240
Date Sat Aug 17 00:08:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 99.9 1.9E-24 6.7E-29 166.1 3.3 85 1-87 15-99 (306)
2 2w96_A G1/S-specific cyclin-D1 99.9 9.8E-23 3.3E-27 152.7 3.5 83 1-87 1-85 (271)
3 2f2c_A Cyclin homolog, V-cycli 99.8 2.2E-19 7.6E-24 133.4 3.5 75 10-87 6-80 (254)
4 1g3n_C V-cyclin; cyclin-depend 99.7 2.5E-19 8.5E-24 133.3 1.8 75 10-87 5-79 (257)
5 1f5q_B Gamma herpesvirus cycli 99.7 5.9E-18 2E-22 127.5 -0.1 70 10-87 8-77 (252)
6 1w98_B Cyclin E, G1/S-specific 99.6 1.1E-16 3.9E-21 121.2 4.2 71 15-87 6-78 (283)
7 2cch_B Cyclin A2, cyclin-A; co 99.5 2.2E-14 7.5E-19 106.7 3.5 60 26-87 8-67 (260)
8 2b9r_A Human cyclin B1; cell c 99.3 1.2E-13 4E-18 103.6 0.2 59 26-87 8-66 (269)
9 2i53_A Cyclin K; cell cycle, t 97.6 3.2E-06 1.1E-10 61.8 -1.9 45 43-87 25-69 (258)
10 2ivx_A Cyclin-T2; transcriptio 97.0 4.7E-05 1.6E-09 55.8 -1.7 42 46-87 18-59 (257)
11 2pk2_A Cyclin-T1, protein TAT; 96.8 0.00017 5.8E-09 56.4 -0.5 42 46-87 25-66 (358)
12 3rgf_B Cyclin-C; protein kinas 95.5 0.0026 8.9E-08 47.7 0.3 34 54-87 38-71 (285)
13 1zp2_A RNA polymerase II holoe 93.5 0.016 5.4E-07 41.9 0.4 29 59-87 28-56 (235)
14 1jkw_A Cyclin H; cell cycle, c 86.1 0.13 4.3E-06 39.3 -0.3 35 53-87 51-87 (323)
15 4er8_A Tnparep for protein; pr 30.2 8.3 0.00028 26.6 -0.6 47 40-94 8-59 (165)
16 2acm_A Mucin-1; auto-catalytic 29.0 5.9 0.0002 24.6 -1.4 15 42-56 30-44 (66)
17 4g9i_A Hydrogenase maturation 24.6 25 0.00085 30.1 1.2 27 60-86 691-717 (772)
18 1gj7_A Urokinase-type plasmino 21.4 27 0.00094 17.7 0.5 20 42-62 6-25 (26)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.89 E-value=1.9e-24 Score=166.15 Aligned_cols=85 Identities=35% Similarity=0.535 Sum_probs=61.1
Q ss_pred CccccccCCCccccccCCCCcccCCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccc
Q psy17189 1 MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCL 80 (95)
Q Consensus 1 m~l~c~e~~~~~~~rA~~DP~l~~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l 80 (95)
|+|+|||+.+... ||.+||+++.|++|+++|++.|++ |.|+++||+.+|++|++.||++++|||+|||+.+++.++|+
T Consensus 15 ~~l~~~e~~~~~~-~a~~dp~l~~~~~i~~~l~~~E~~-~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~ 92 (306)
T 3g33_B 15 MELLCCEGTRHAP-RAGPDPRLLGDQRVLQSLLRLEER-YVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVF 92 (306)
T ss_dssp -----------------------CHHHHHHHHHHHGGG-GSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHH
T ss_pred cceeeeccccccc-ccCCCCcccchHHHHHHHHHHHHH-hCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHH
Confidence 8999999656667 999999999989999999999999 99999999989999999999999999999999999999999
Q ss_pred cchhhhh
Q psy17189 81 SGGAFLI 87 (95)
Q Consensus 81 ~~~~~~~ 87 (95)
+++|+++
T Consensus 93 ~lAv~~l 99 (306)
T 3g33_B 93 PLAMNYL 99 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 2
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.86 E-value=9.8e-23 Score=152.73 Aligned_cols=83 Identities=36% Similarity=0.558 Sum_probs=65.5
Q ss_pred Cc--cccccCCCccccccCCCCcccCCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccc
Q psy17189 1 ME--LYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAF 78 (95)
Q Consensus 1 m~--l~c~e~~~~~~~rA~~DP~l~~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e 78 (95)
|| |+||| .++.. ||.+||+++ +++++++|++.|.+ |.|+++||..+|++|+++||++++|||++|++.+++.++
T Consensus 1 ~~~~l~c~e-~~~~~-~~~~dp~~~-~~~i~~~l~~~E~~-~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~ 76 (271)
T 2w96_A 1 MEHQLLCCE-VETIR-RAYPDANLL-NDRVLRAMLKAEET-CAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEE 76 (271)
T ss_dssp -----CCCS-SSCC-------------CHHHHHHHHHHHH-TCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCcceeeCC-CCccc-cCCCCCccc-HHHHHHHHHHHHHH-hCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchh
Confidence 77 99999 56666 899999999 67999999999999 999999999899999999999999999999999999999
Q ss_pred cccchhhhh
Q psy17189 79 CLSGGAFLI 87 (95)
Q Consensus 79 ~l~~~~~~~ 87 (95)
|+++++.++
T Consensus 77 tl~lAv~~l 85 (271)
T 2w96_A 77 VFPLAMNYL 85 (271)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.76 E-value=2.2e-19 Score=133.41 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=69.8
Q ss_pred CccccccCCCCcccCCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189 10 NTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI 87 (95)
Q Consensus 10 ~~~~~rA~~DP~l~~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~ 87 (95)
++.. +|..||+++.|++|++ |++.|.+ |.|+++||+..|++|+++||++++|||+|||+.+++.++|++++|+++
T Consensus 6 ~~~~-~~~~dp~l~~~~~i~~-l~~~E~~-~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~ 80 (254)
T 2f2c_A 6 NRLN-RAKIDSTTMKDPRVLN-NLKLREL-LLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSIL 80 (254)
T ss_dssp --CC-BCCCCHHHHTCHHHHH-HHHHHHT-TSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred CCCC-CCCCCcccccHHHHHH-HHHHHHh-hCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 4556 8999999999999999 9999999 999999998789999999999999999999999999999999999876
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.74 E-value=2.5e-19 Score=133.32 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=61.8
Q ss_pred CccccccCCCCcccCCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189 10 NTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI 87 (95)
Q Consensus 10 ~~~~~rA~~DP~l~~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~ 87 (95)
++.. ++.+||+++.|++|+ +|++.|.+ |.|+++||+.+|++|+++||++++|||+|||+.+++.++|++++|+++
T Consensus 5 ~~~~-~~~~dp~~~~~~~i~-~l~~~E~~-~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~ 79 (257)
T 1g3n_C 5 NNPP-SGLLDPTLCEDRIFY-NILEIEPR-FLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLL 79 (257)
T ss_dssp ------------CHHHHHHH-HHHHHGGG-GCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCc-cCCCCCccccHHHHH-HHHHHHHH-hCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3445 799999999889999 99999999 999999998789999999999999999999999999999999999886
No 5
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.66 E-value=5.9e-18 Score=127.54 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=63.9
Q ss_pred CccccccCCCCcccCCHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189 10 NTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI 87 (95)
Q Consensus 10 ~~~~~rA~~DP~l~~d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~ 87 (95)
.... +|..||+++.| +++++|++.|.+ |.| ..+|++|+|+||++++|||+|||+++++.++|++++|+++
T Consensus 8 ~~~~-~~~~dp~l~~d-~i~~~l~~~E~~-~~p-----~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~l 77 (252)
T 1f5q_B 8 GFLD-SSLLNEEDCRQ-MIYRSEREHDAR-MVG-----VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALL 77 (252)
T ss_dssp SSCS-CTTCCHHHHHH-HHHHHHHHHHHH-HSS-----SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred CCCC-cCcCCHHHhHH-HHHHHHHHHHHH-hCc-----CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3456 89999999954 999999999999 988 3579999999999999999999999999999999999886
No 6
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.63 E-value=1.1e-16 Score=121.16 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=65.2
Q ss_pred ccCCCCcccC--CHHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189 15 TAGRDATMYT--DSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI 87 (95)
Q Consensus 15 rA~~DP~l~~--d~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~ 87 (95)
||.+||.++. +++|+++|++.|.+ |.|+++|++. |++|++.||++++|||.||++.+++.++|+++++.++
T Consensus 6 ~~~~~p~l~~~y~~~i~~~l~~~E~~-~~~~~~y~~~-q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~l 78 (283)
T 1w98_B 6 RGSPLPVLSWANREEVWKIMLNKEKT-YLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFF 78 (283)
T ss_dssp --CCSCCCSSSCHHHHHHHHHHHTTT-SCCCTTGGGG-CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHH
T ss_pred CCCCCcchhhcCHHHHHHHHHHHHHH-hCCCchhhcc-CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 7999999984 46999999999999 9999999985 9999999999999999999999999999999999876
No 7
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.46 E-value=2.2e-14 Score=106.73 Aligned_cols=60 Identities=25% Similarity=0.283 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189 26 SRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI 87 (95)
Q Consensus 26 ~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~ 87 (95)
++|+.+|++.|.+ +.|+++|++. |++|++.||++++|||+|||+.+++..+|+++++.++
T Consensus 8 ~di~~~l~~~E~~-~~p~~~y~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~l 67 (260)
T 2cch_B 8 EDIHTYLREMEVK-CKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 67 (260)
T ss_dssp HHHHHHHHHHHHH-TCCCTTGGGG-CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-cCCCchhhhc-CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5899999999999 9999999986 9999999999999999999999999999999999875
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.33 E-value=1.2e-13 Score=103.59 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhhhCCCCCCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189 26 SRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI 87 (95)
Q Consensus 26 ~rVl~nLl~~E~~~y~P~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~ 87 (95)
++|+++|++.|.+ +.|+++|++. | +|++.||++++|||.|||+.+++.++|++++++++
T Consensus 8 ~di~~~l~~~E~~-~~~~~~y~~~-q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~l 66 (269)
T 2b9r_A 8 KDIYAYLRQLEAA-QAVRPKYLLG-R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSII 66 (269)
T ss_dssp CTTTTTHHHHHHT-TCCCTTTTSS-S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hCCCcccccC-C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4789999999999 9999999986 7 99999999999999999999999999999999876
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.63 E-value=3.2e-06 Score=61.82 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=40.9
Q ss_pred CCCchhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189 43 PVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI 87 (95)
Q Consensus 43 ~~~Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~ 87 (95)
++++...++.++.+.||+++++||.+||..+++.++|++.++.++
T Consensus 25 ~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~ 69 (258)
T 2i53_A 25 TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYF 69 (258)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 456777788999999999999999999999999999999998775
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=97.03 E-value=4.7e-05 Score=55.81 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=36.4
Q ss_pred chhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189 46 YFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI 87 (95)
Q Consensus 46 Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~ 87 (95)
....++.+....||.++++||.+||..+++..+|++.++.++
T Consensus 18 ~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~ 59 (257)
T 2ivx_A 18 RRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYM 59 (257)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 344456667789999999999999999999999999998876
No 11
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=96.78 E-value=0.00017 Score=56.39 Aligned_cols=42 Identities=7% Similarity=0.079 Sum_probs=36.4
Q ss_pred chhhhcccCCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189 46 YFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI 87 (95)
Q Consensus 46 Yf~~VQ~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~ 87 (95)
....++.+....||.++++||.+||..+++..+|++.++.++
T Consensus 25 ~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~ 66 (358)
T 2pk2_A 25 RRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYM 66 (358)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344456667789999999999999999999999999999876
No 12
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=95.50 E-value=0.0026 Score=47.73 Aligned_cols=34 Identities=3% Similarity=-0.062 Sum_probs=30.7
Q ss_pred CCccchhhhhhhhhhhhhccccccccccchhhhh
Q psy17189 54 IKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLI 87 (95)
Q Consensus 54 ItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~ 87 (95)
-.-.||.++++||.+||..+++..+|++.++.++
T Consensus 38 ~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~ 71 (285)
T 3rgf_B 38 EYWKLQIFFTNVIQALGEHLKLRQQVIATATVYF 71 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3358999999999999999999999999998765
No 13
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=93.51 E-value=0.016 Score=41.85 Aligned_cols=29 Identities=10% Similarity=-0.064 Sum_probs=27.5
Q ss_pred hhhhhhhhhhhhhccccccccccchhhhh
Q psy17189 59 RKIVNSWMQEVSFPHIFHAFCLSGGAFLI 87 (95)
Q Consensus 59 R~ILvdWmlEVcEE~~~~~e~l~~~~~~~ 87 (95)
|.++++||.+||+.+++..+|++.++.++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~ 56 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLL 56 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999998765
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=86.09 E-value=0.13 Score=39.34 Aligned_cols=35 Identities=6% Similarity=-0.035 Sum_probs=31.1
Q ss_pred cCCccchhhhhhhhhhhhhccc--cccccccchhhhh
Q psy17189 53 EIKPYMRKIVNSWMQEVSFPHI--FHAFCLSGGAFLI 87 (95)
Q Consensus 53 dItP~MR~ILvdWmlEVcEE~~--~~~e~l~~~~~~~ 87 (95)
+-...+|....+|+.+||+.++ +..+|++.++.++
T Consensus 51 eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~ 87 (323)
T 1jkw_A 51 HEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYF 87 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3446799999999999999999 9999999998765
No 15
>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic tyrosine, RNA recognition motif, transposase, HUH motif, DNA binding PROT complex; HET: DNA; 2.60A {Escherichia coli}
Probab=30.23 E-value=8.3 Score=26.56 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=31.7
Q ss_pred CCCCCCchhhh-----cccCCccchhhhhhhhhhhhhccccccccccchhhhhhhcCCCC
Q psy17189 40 GVPPVDYFVSV-----QTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFCMLPNQ 94 (95)
Q Consensus 40 y~P~~~Yf~~V-----Q~dItP~MR~ILvdWmlEVcEE~~~~~e~l~~~~~~~~~~~~~~ 94 (95)
|.|...||-++ |.-+...-+.++.+.+.+++++++++ . .-+|.+||.
T Consensus 8 ~~pG~~YfiT~~~~~R~~~f~~~~~~~l~~~l~~~~~~~~~~-----i---~A~vlMpNH 59 (165)
T 4er8_A 8 YIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFE-----I---NAWVVLPEH 59 (165)
T ss_dssp CCTTCEEEEEEEBSCTTCCHHHHTHHHHHHHHHHHHHHSCCE-----E---EEEEECSSE
T ss_pred CcCCCEEEEEEEeCCcccccCchHHHHHHHHHHHHHHHCCcE-----E---EEEEEcCCc
Confidence 56777787432 23344456788999999999998764 2 235667774
No 16
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=29.03 E-value=5.9 Score=24.58 Aligned_cols=15 Identities=33% Similarity=0.775 Sum_probs=13.1
Q ss_pred CCCCchhhhcccCCc
Q psy17189 42 PPVDYFVSVQTEIKP 56 (95)
Q Consensus 42 P~~~Yf~~VQ~dItP 56 (95)
|+.+|++..|++|+.
T Consensus 30 Pst~YYqeLqr~is~ 44 (66)
T 2acm_A 30 PSTDYYQELQRDISE 44 (66)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH
Confidence 899999999999764
No 17
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=24.55 E-value=25 Score=30.14 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=23.5
Q ss_pred hhhhhhhhhhhhccccccccccchhhh
Q psy17189 60 KIVNSWMQEVSFPHIFHAFCLSGGAFL 86 (95)
Q Consensus 60 ~ILvdWmlEVcEE~~~~~e~l~~~~~~ 86 (95)
.++++|....++++++..-+|+||||+
T Consensus 691 ~~L~~~~~~a~~~tg~~~VvLSGGVa~ 717 (772)
T 4g9i_A 691 RAFAHTAVERAREFGVKNVALSGGVAY 717 (772)
T ss_dssp HHHHHHHHHHHHTTTCSCCCEESSTTC
T ss_pred HHHHHHHHHHHHHhCcCEEEEEchHHH
Confidence 456778888899999999999999986
No 18
>1gj7_A Urokinase-type plasminogen activator; selectivity at S1, H2O displacement, UPA, TPA, Ser190/Ala190 protease, structure-based drug design; HET: CIT 132; 1.50A {Homo sapiens} SCOP: b.47.1.2 PDB: 1c5w_A* 1c5x_A* 1c5z_A* 1gi7_A* 1gi8_A* 1gi9_A* 1c5y_A* 1gj8_A* 1gj9_A* 1gja_A* 1gjb_A* 1gjc_A* 1gjd_A* 1lmw_A* 1o3p_A* 1o5a_A* 1o5b_A* 1o5c_A* 3ig6_A*
Probab=21.35 E-value=27 Score=17.72 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=15.3
Q ss_pred CCCCchhhhcccCCccchhhh
Q psy17189 42 PPVDYFVSVQTEIKPYMRKIV 62 (95)
Q Consensus 42 P~~~Yf~~VQ~dItP~MR~IL 62 (95)
|...-|++-|++.++.| +|+
T Consensus 6 ~~~~~f~CGq~~~~r~~-kIv 25 (26)
T 1gj7_A 6 PEELKFQCGQKTLRPRF-KXX 25 (26)
T ss_pred ccccccccCCcCCCccc-ccc
Confidence 44446889999999999 664
Done!