RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17189
(95 letters)
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain. Cyclins regulate
cyclin dependent kinases (CDKs). Human cyclin-O is a
Uracil-DNA glycosylase that is related to other
cyclins. Cyclins contain two domains of similar
all-alpha fold, of which this family corresponds with
the N-terminal domain.
Length = 127
Score = 32.9 bits (76), Expect = 0.006
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 27 RVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVS 70
+ L E+ + PP DY Q +I P MR I+ W+ EV
Sbjct: 1 DIYAYLRELEEED-RPPPDYLDQ-QPDINPKMRAILIDWLVEVH 42
>gnl|CDD|183540 PRK12462, PRK12462, phosphoserine aminotransferase; Provisional.
Length = 364
Score = 28.6 bits (64), Expect = 0.40
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 45 DYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFCMLP 92
+F S+ + + +R ++ P + L GG+ L F M+P
Sbjct: 45 SWFSSLLAQAEADLRDLL-------GIPDEYGVVFLQGGSSLQFSMIP 85
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar
proteins. ParM is a plasmid-encoded bacterial homolog
of actin, which polymerizes into filaments similar to
F-actin, and plays a vital role in plasmid segregation.
ParM filaments segregate plasmids paired at midcell into
the individual daughter cells. This subfamily also
contains Thermoplasma acidophilum Ta0583, an active
ATPase at physiological temperatures, which has a
propensity to form filaments.
Length = 312
Score = 27.8 bits (62), Expect = 0.73
Identities = 13/73 (17%), Positives = 25/73 (34%)
Query: 16 AGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIF 75
+D + E L + N D ++ + Y KI+N + + +
Sbjct: 213 NKEYGIDLSDEEIEEILRNGKIKNYGKEEDITEIIEEAAEEYAEKILNELKEFLGLSDVD 272
Query: 76 HAFCLSGGAFLIF 88
+ GGA L+
Sbjct: 273 KVILVGGGAILLK 285
>gnl|CDD|219814 pfam08385, DHC_N1, Dynein heavy chain, N-terminal region 1. Dynein
heavy chains interact with other heavy chains to form
dimers, and with intermediate chain-light chain
complexes to form a basal cargo binding unit. The region
featured in this family includes the sequences
implicated in mediating these interactions. It is
thought to be flexible and not to adopt a rigid
conformation.
Length = 577
Score = 25.7 bits (57), Expect = 4.4
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 47 FVSVQTEIKPYMRKIVNSWMQEVS 70
+ S + ++ Y ++I +W+ EV
Sbjct: 434 YESFRKKLDTYEQQIFEAWLDEVE 457
>gnl|CDD|220843 pfam10673, DUF2487, Protein of unknown function (DUF2487). This
is a bacterial family of uncharacterized proteins.
Length = 143
Score = 25.3 bits (56), Expect = 4.6
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 41 VPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIF 75
+P Y S Q + K + ++E F H+F
Sbjct: 55 LPAFTYLASEQKDEAGERLKEWTNALKEEGFRHVF 89
>gnl|CDD|184853 PRK14851, PRK14851, hypothetical protein; Provisional.
Length = 679
Score = 25.6 bits (56), Expect = 4.8
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 7 ENLNTDRCTAGRDATM-YTDSRVMENL-----ITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
EN+ T G DAT Y E+L + H P D+ T KPY ++
Sbjct: 385 ENMRIAATTFGLDATTQYRPDAAQEDLMATVRLQPGDHTKDPLADHIWKRCTNRKPYSKR 444
Query: 61 IVNSWMQE 68
+ W+
Sbjct: 445 PLPEWVLN 452
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14,
and other related proteins. ALDH subfamily which
includes NAD(P)+-dependent, aldehyde dehydrogenase,
family 3 member A1 and B1 (ALDH3A1, ALDH3B1,
EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3
member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH
family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal
ALDH14 (YMR110C) and the protozoan family 13 member
(ALDH13), as well as coniferyl aldehyde dehydrogenases
(CALDH, EC=1.2.1.68), and other similar sequences,
such as the Pseudomonas putida benzaldehyde
dehydrogenase I that is involved in the metabolism of
mandelate.
Length = 426
Score = 25.2 bits (56), Expect = 7.2
Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 48 VSVQTEIKPYMRKIVNSWMQEVSFPHIFHAF 78
V EI + K + WM+
Sbjct: 61 AVVLGEID-HALKHLKKWMKPRRVSVPLLLQ 90
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease;
Provisional.
Length = 469
Score = 24.7 bits (54), Expect = 9.8
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 74 IFHAFCLSGGAFLIFCMLPNQV 95
F CL GG L++ + P+ +
Sbjct: 348 TFSCICLLGGVVLLY-VNPSVI 368
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.136 0.430
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,637,411
Number of extensions: 358425
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 9
Length of query: 95
Length of database: 10,937,602
Length adjustment: 62
Effective length of query: 33
Effective length of database: 8,187,654
Effective search space: 270192582
Effective search space used: 270192582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)