RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17189
(95 letters)
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase,
chromosomal rearrangement, ATP-binding, transferase,
polymorphism, cell division; 2.30A {Homo sapiens} PDB:
2w99_A 2w9f_A 2w9z_A
Length = 271
Score = 58.6 bits (142), Expect = 5e-12
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 1 MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
+L C E R A DA + D RV+ ++ +E+ P V YF VQ E+ P MRK
Sbjct: 3 HQLLCCEVETIRR--AYPDANLLND-RVLRAMLKAEETC-APSVSYFKCVQKEVLPSMRK 58
Query: 61 IVNSWMQEV 69
IV +WM EV
Sbjct: 59 IVATWMLEV 67
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle,
phosphorylation, ATP-BIN cell division, disease
mutation, kinase; 3.00A {Homo sapiens}
Length = 306
Score = 58.3 bits (141), Expect = 7e-12
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 1 MELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRK 60
MEL C E AG D + D RV+++L+ E+ VP YF VQ EIKP+MRK
Sbjct: 15 MELLCCEGTRHAP-RAGPDPRLLGDQRVLQSLLRLEERY-VPRASYFQCVQREIKPHMRK 72
Query: 61 IVNSWMQEV 69
++ WM EV
Sbjct: 73 MLAYWMLEV 81
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin,
cell cycle, signaling protein; 2.90A {Human herpesvirus
8} SCOP: a.74.1.1 a.74.1.1
Length = 257
Score = 50.9 bits (122), Expect = 3e-09
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 15 TAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEV 69
+ D T+ D R+ N++ E + F + Q + +MRK++ +WM V
Sbjct: 9 SGLLDPTLCED-RIFYNILEIEPRF-LTSDSVFGTFQQSLTSHMRKLLGTWMFSV 61
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between
N-terminal and C-TERM domain of kinase, cell
cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus
saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A*
1xo2_A* 1bu2_A
Length = 254
Score = 50.1 bits (120), Expect = 6e-09
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 16 AGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEV 69
A D+T D RV+ NL E P +QTE+ R I+ +WM +
Sbjct: 11 AKIDSTTMKDPRVLNNLKLRELLL--PKFTSLWEIQTEVTVDNRTILLTWMHLL 62
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent
kinase. protein/protein complex, transferase; 2.50A
{Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Length = 252
Score = 49.0 bits (117), Expect = 1e-08
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 14 CTAGRDATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEV 69
D+++ + + + SE+ V+V RK++ +WM V
Sbjct: 6 FQGFLDSSLLNEEDCRQMIYRSERE--HDARMVGVNVDQHFTSQYRKVLTTWMFCV 59
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET:
TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 283
Score = 36.3 bits (84), Expect = 5e-04
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 26 SRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEV 69
V + ++ E+ + + ++P MR I+ W+ EV
Sbjct: 19 EEVWKIMLNKEKTY-LRDQHFL-EQHPLLQPKMRAILLDWLMEV 60
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
2x1n_B* 1vyw_B* ...
Length = 260
Score = 31.1 bits (71), Expect = 0.033
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 28 VMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEV 69
+ L E P V Y Q +I MR I+ W+ EV
Sbjct: 10 IHTYLREMEVKC-KPKVGYM-KKQPDITNSMRAILVDWLVEV 49
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.043
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 20/49 (40%)
Query: 41 VPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFC 89
P DY +S+ P +S P I + +++
Sbjct: 225 TPDKDYLLSI-----P------------ISCPLI---GVIQLAHYVVTA 253
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Length = 269
Score = 27.7 bits (62), Expect = 0.44
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 28 VMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEV 69
+ L E Y + E+ MR I+ W+ +V
Sbjct: 10 IYAYLRQLEAAQ-AVRPKYLL--GREVTGNMRAILIDWLVQV 48
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site
mutant, lyase, META; 2.00A {Haemophilus influenzae}
PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A
3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A
Length = 229
Score = 25.9 bits (57), Expect = 1.9
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 25 DSRVMENLITSEQHNGVPPVDYFV 48
DSRV +T + P + FV
Sbjct: 44 DSRVPAEKLT-----NLEPGELFV 62
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A
{Cryptococcus neoformans} PDB: 2w3n_A
Length = 243
Score = 25.6 bits (56), Expect = 2.5
Identities = 10/24 (41%), Positives = 10/24 (41%), Gaps = 5/24 (20%)
Query: 25 DSRVMENLITSEQHNGVPPVDYFV 48
DSRV E I P D FV
Sbjct: 74 DSRVPEVTIM-----ARKPGDVFV 92
>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet,
chaperone; 2.35A {Escherichia coli} SCOP: d.33.1.1
Length = 153
Score = 25.7 bits (56), Expect = 2.6
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 48 VSVQTEIKPYMRKIVNSWMQEVSFPHI 74
+ PY R+ + S + +FP +
Sbjct: 100 AYCPNILFPYARECITSMVSRGTFPQL 126
>3qy1_A Carbonic anhydrase; structural genomics, center for structural
genomics of infec diseases, csgid, lyase; 1.54A
{Salmonella enterica subsp} PDB: 1i6p_A 1i6o_A 1t75_A
2esf_A
Length = 223
Score = 25.5 bits (56), Expect = 2.6
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 5/24 (20%)
Query: 25 DSRVMENLITSEQHNGVPPVDYFV 48
DSRV +T G+ P + FV
Sbjct: 47 DSRVPAERLT-----GLEPGELFV 65
>1fx3_A SECB, protein-export protein SECB; protein trasnport,
translocation, transport protein; 2.50A {Haemophilus
influenzae} SCOP: d.33.1.1 PDB: 1ozb_A
Length = 169
Score = 25.4 bits (55), Expect = 3.0
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 46 YFVSVQTEIKPYMRKIVNSWMQEVSFPHI 74
+ PY R++V++ + +FP +
Sbjct: 107 LTSQCPNMLFPYARELVSNLVNRGTFPAL 135
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase
inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB:
3uck_A 3ucm_A 3ucn_A 3uco_A
Length = 227
Score = 25.5 bits (56), Expect = 3.1
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 5/24 (20%)
Query: 25 DSRVMENLITSEQHNGVPPVDYFV 48
DSRV + + P + FV
Sbjct: 49 DSRVSPAQLF-----NMAPGEVFV 67
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium
purpureum} SCOP: c.53.2.1 c.53.2.1
Length = 496
Score = 25.3 bits (55), Expect = 3.3
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 25 DSRVMENLITSEQHNGVPPVDYFV 48
DSRV N + +P + FV
Sbjct: 76 DSRVPANQLL-----DLPAGEVFV 94
Score = 25.3 bits (55), Expect = 3.9
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 25 DSRVMENLITSEQHNGVPPVDYFV 48
DSRV N I +P + FV
Sbjct: 330 DSRVPANQII-----NLPAGEVFV 348
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange,
lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1
Length = 221
Score = 24.7 bits (54), Expect = 5.2
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 5/24 (20%)
Query: 25 DSRVMENLITSEQHNGVPPVDYFV 48
DSRV + + P + FV
Sbjct: 54 DSRVCPSHVL-----DFQPGEAFV 72
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 24.3 bits (53), Expect = 7.3
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 2 ELYCSENLNTDRCTAGRDATMYTDSRVMENLITS 35
+ C L T+ + + D + +L
Sbjct: 300 DEGCECQLATNIGFMSKLSNKA-DHKYCHSLAKE 332
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.430
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,402,635
Number of extensions: 66972
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 22
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)