RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17189
(95 letters)
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 132
Score = 46.8 bits (111), Expect = 1e-08
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 25 DSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGA 84
+ R+ N++ E + F + Q + +MRK++ +WM V + ++
Sbjct: 3 EDRIFYNILEIEPRF-LTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALAL 61
Query: 85 FLIFCMLPNQV 95
L+ +L +
Sbjct: 62 NLLDRLLLIKQ 72
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri
[TaxId: 10381]}
Length = 127
Score = 39.9 bits (93), Expect = 4e-06
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 27 RVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVS 70
RV+ NL E +P +QTE+ R I+ +WM +
Sbjct: 1 RVLNNLKLRELL--LPKFTSLWEIQTEVTVDNRTILLTWMHLLC 42
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68
[TaxId: 33708]}
Length = 141
Score = 39.2 bits (91), Expect = 9e-06
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 19 DATMYTDSRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAF 78
D+++ + + + SE+ + V+V RK++ +WM V
Sbjct: 6 DSSLLNEEDCRQMIYRSEREH--DARMVGVNVDQHFTSQYRKVLTTWMFCVCKDLRQDNN 63
Query: 79 CL 80
Sbjct: 64 VF 65
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 128
Score = 33.8 bits (77), Expect = 8e-04
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 42 PPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAFLIFCMLPNQ 94
P V Y Q +I MR I+ W+ EV + L I L +
Sbjct: 15 PKVGYM-KKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSM 66
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 31.9 bits (72), Expect = 0.005
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 26 SRVMENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHIFHAFCLSGGAF 85
V + ++ E+ + + ++P MR I+ W+ EV + H
Sbjct: 12 EEVWKIMLNKEKTY-LRDQHFL-EQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQD 69
Query: 86 LIFCML 91
+
Sbjct: 70 FFDRYM 75
>d1ozba_ d.33.1.1 (A:) Bacterial protein-export protein SecB
{Haemophilus influenzae [TaxId: 727]}
Length = 144
Score = 24.5 bits (53), Expect = 2.3
Identities = 8/63 (12%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 14 CTAGRDATMYTDSRVMENLITSEQHNGVPPVDYF--VSVQTEIKPYMRKIVNSWMQEVSF 71
T + V + + + + + + PY R++V++ + +F
Sbjct: 58 TTLEDSGDVAFICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTF 117
Query: 72 PHI 74
P +
Sbjct: 118 PAL 120
>d1qyna_ d.33.1.1 (A:) Bacterial protein-export protein SecB
{Escherichia coli [TaxId: 562]}
Length = 134
Score = 24.1 bits (52), Expect = 2.9
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 29 MENLITSEQHNGVPPVDYFVSVQTEIKPYMRKIVNSWMQEVSFPHI 74
I + + + PY R+ + S + +FP +
Sbjct: 74 GIFSIAGIEGTQMAHC-LGAYCPNILFPYARECITSMVSRGTFPQL 118
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 24.0 bits (52), Expect = 3.4
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 56 PYMRKIVNSWMQEVSFPHIFHAFC 79
+ + VN W+ + F AF
Sbjct: 4 ARLEEAVNRWVLKFYFHEALRAFR 27
>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId:
5664]}
Length = 475
Score = 24.4 bits (52), Expect = 3.5
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 2 ELYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQHNGVP 42
++C+E+ + RC R + L Q+ P
Sbjct: 304 AMFCNESEDAIRCPTSRLSLGACGVTRHPGLPPYWQYFTDP 344
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 291
Score = 23.9 bits (51), Expect = 4.0
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 50 VQTEIKPYMRKIVNSW-MQEVSFPHIFHAFCLSGGAFLIFC 89
++ EI+ Y+ S V P + +
Sbjct: 32 IRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHY 72
>d1gh9a_ g.41.6.1 (A:) Hypothetical protein MTH1184 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 71
Score = 22.3 bits (47), Expect = 8.0
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 3 LYCSENLNTDRCTAGRDATMYTDSRVMENLITSEQ 37
LY E T +C GR + D R+ E+
Sbjct: 13 LYSREGAKTRKCVCGRTVNV-KDRRIFGRADDFEE 46
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 204
Score = 22.8 bits (49), Expect = 8.2
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 59 RKIVNSWMQEVSFPHIFHAFC 79
+ WM + + AF
Sbjct: 10 EAVAAGWMLDFLCLSLCRAFR 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.136 0.430
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,892
Number of extensions: 13670
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 18
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)