Query psy1719
Match_columns 73
No_of_seqs 108 out of 310
Neff 5.7
Searched_HMMs 46136
Date Sat Aug 17 00:09:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0505|consensus 99.6 1.8E-15 3.9E-20 117.2 5.9 69 1-73 141-209 (527)
2 PF13637 Ank_4: Ankyrin repeat 99.2 3.3E-11 7.2E-16 66.7 3.2 42 31-73 4-45 (54)
3 PF13857 Ank_5: Ankyrin repeat 99.0 5.2E-10 1.1E-14 62.9 2.9 38 31-69 19-56 (56)
4 PF12796 Ank_2: Ankyrin repeat 98.9 1.7E-09 3.6E-14 63.8 4.4 51 22-73 19-70 (89)
5 KOG0515|consensus 98.8 1.9E-09 4.2E-14 85.1 3.2 42 31-73 586-627 (752)
6 PHA02730 ankyrin-like protein; 98.7 1.8E-08 4E-13 80.5 4.8 68 5-73 13-88 (672)
7 PF13857 Ank_5: Ankyrin repeat 98.6 1.7E-08 3.7E-13 56.6 1.5 26 47-73 1-27 (56)
8 PHA02878 ankyrin repeat protei 98.6 4.6E-08 9.9E-13 73.2 4.1 43 30-73 39-81 (477)
9 KOG0509|consensus 98.6 2.3E-08 5E-13 79.1 2.0 42 32-73 82-123 (600)
10 PHA02946 ankyin-like protein; 98.5 8E-08 1.7E-12 72.6 4.0 41 31-72 75-115 (446)
11 PHA03095 ankyrin-like protein; 98.5 1.4E-07 3E-12 69.3 4.1 55 18-73 242-301 (471)
12 KOG4177|consensus 98.5 1.1E-07 2.3E-12 79.6 3.9 67 5-73 513-584 (1143)
13 PHA02876 ankyrin repeat protei 98.5 2.8E-07 6.1E-12 71.7 5.7 44 29-73 146-189 (682)
14 KOG4412|consensus 98.5 1.1E-07 2.5E-12 67.2 2.8 37 32-69 143-179 (226)
15 KOG0512|consensus 98.4 1.1E-07 2.5E-12 67.0 2.6 42 31-73 100-141 (228)
16 KOG0509|consensus 98.4 1.8E-07 3.8E-12 74.2 3.6 54 19-73 97-156 (600)
17 PHA02795 ankyrin-like protein; 98.4 2.5E-07 5.4E-12 71.0 4.1 42 31-73 224-265 (437)
18 PHA02791 ankyrin-like protein; 98.4 2.8E-07 6.1E-12 66.6 4.1 42 31-73 64-105 (284)
19 PHA02736 Viral ankyrin protein 98.4 2.3E-07 5.1E-12 59.8 3.0 40 32-72 96-136 (154)
20 KOG4412|consensus 98.4 2.6E-07 5.7E-12 65.4 3.3 71 2-73 75-150 (226)
21 PHA02875 ankyrin repeat protei 98.4 3.9E-07 8.5E-12 66.4 4.1 40 32-72 39-78 (413)
22 PHA02743 Viral ankyrin protein 98.4 3.1E-07 6.7E-12 60.7 3.2 42 32-73 61-105 (166)
23 KOG0505|consensus 98.4 1.8E-07 4E-12 73.1 2.4 42 31-73 201-242 (527)
24 PHA02741 hypothetical protein; 98.4 5.1E-07 1.1E-11 59.5 4.2 41 32-72 64-108 (169)
25 PHA02989 ankyrin repeat protei 98.4 3.9E-07 8.5E-12 68.7 4.0 41 32-73 260-300 (494)
26 PHA02884 ankyrin repeat protei 98.4 5.7E-07 1.2E-11 65.9 4.4 43 31-73 73-115 (300)
27 PHA02795 ankyrin-like protein; 98.3 5E-07 1.1E-11 69.4 3.7 40 33-73 193-232 (437)
28 PHA02878 ankyrin repeat protei 98.3 7.6E-07 1.6E-11 66.6 4.4 41 32-73 172-212 (477)
29 PLN03192 Voltage-dependent pot 98.3 5.4E-07 1.2E-11 72.2 3.8 40 32-72 562-601 (823)
30 PHA02875 ankyrin repeat protei 98.3 7.1E-07 1.5E-11 65.1 4.0 40 32-72 106-145 (413)
31 PHA02736 Viral ankyrin protein 98.3 8.8E-07 1.9E-11 57.1 3.8 43 31-73 58-103 (154)
32 PHA03100 ankyrin repeat protei 98.3 1.5E-06 3.3E-11 64.1 5.5 40 32-72 219-260 (480)
33 PLN03192 Voltage-dependent pot 98.3 7.3E-07 1.6E-11 71.5 4.0 42 31-73 625-666 (823)
34 PHA02917 ankyrin-like protein; 98.3 1.5E-06 3.2E-11 69.0 5.4 69 3-73 2-79 (661)
35 PHA02791 ankyrin-like protein; 98.3 9.1E-07 2E-11 64.0 3.9 43 30-73 162-205 (284)
36 PHA03095 ankyrin-like protein; 98.3 9.2E-07 2E-11 65.0 3.9 41 32-73 51-94 (471)
37 PHA02874 ankyrin repeat protei 98.3 1.1E-06 2.3E-11 65.0 4.1 42 31-73 127-168 (434)
38 PHA02884 ankyrin repeat protei 98.3 1.1E-06 2.5E-11 64.3 4.1 41 31-72 107-147 (300)
39 PHA02798 ankyrin-like protein; 98.2 1.1E-06 2.4E-11 66.2 3.8 42 31-73 261-302 (489)
40 PHA02946 ankyin-like protein; 98.2 1.5E-06 3.2E-11 65.8 4.4 36 37-73 48-83 (446)
41 PHA02859 ankyrin repeat protei 98.2 2.9E-06 6.3E-11 58.0 5.1 30 40-70 102-131 (209)
42 PHA02743 Viral ankyrin protein 98.2 1.6E-06 3.5E-11 57.3 3.7 42 31-73 97-139 (166)
43 PTZ00322 6-phosphofructo-2-kin 98.2 1.6E-06 3.5E-11 68.6 4.0 40 32-72 119-158 (664)
44 PHA02741 hypothetical protein; 98.2 2.6E-06 5.6E-11 56.2 4.1 42 31-73 101-143 (169)
45 PHA02917 ankyrin-like protein; 98.2 1.9E-06 4.1E-11 68.4 3.9 35 38-73 206-240 (661)
46 PHA03100 ankyrin repeat protei 98.2 2.3E-06 4.9E-11 63.2 4.1 42 31-73 253-294 (480)
47 PHA02798 ankyrin-like protein; 98.1 2.4E-06 5.2E-11 64.4 3.7 33 39-72 87-119 (489)
48 PHA02716 CPXV016; CPX019; EVM0 98.1 3.8E-06 8.3E-11 68.2 5.0 41 32-73 501-546 (764)
49 KOG0195|consensus 98.1 1.5E-06 3.2E-11 65.5 2.2 43 30-73 69-111 (448)
50 PTZ00322 6-phosphofructo-2-kin 98.1 3.3E-06 7.2E-11 66.8 3.9 42 31-73 85-126 (664)
51 PHA02874 ankyrin repeat protei 98.1 3.9E-06 8.5E-11 62.0 4.1 41 32-73 161-201 (434)
52 PHA02989 ankyrin repeat protei 98.1 4.9E-06 1.1E-10 62.7 4.6 35 36-71 119-154 (494)
53 COG0666 Arp FOG: Ankyrin repea 98.1 5.3E-06 1.2E-10 52.9 3.8 42 31-73 109-158 (235)
54 KOG0818|consensus 98.0 5.9E-06 1.3E-10 65.3 4.5 44 30-73 135-178 (669)
55 PF12796 Ank_2: Ankyrin repeat 98.0 6.5E-06 1.4E-10 48.3 3.5 37 32-73 1-37 (89)
56 PHA02716 CPXV016; CPX019; EVM0 98.0 9.9E-06 2.1E-10 65.8 5.2 38 33-71 289-326 (764)
57 PHA02730 ankyrin-like protein; 98.0 1.7E-05 3.7E-10 63.8 6.1 63 8-72 324-388 (672)
58 PHA02859 ankyrin repeat protei 98.0 7.1E-06 1.5E-10 56.1 3.4 30 39-69 136-165 (209)
59 PHA02876 ankyrin repeat protei 97.9 1.2E-05 2.6E-10 62.7 4.4 56 17-73 162-222 (682)
60 KOG0510|consensus 97.9 8.3E-06 1.8E-10 66.9 3.0 42 31-73 276-317 (929)
61 KOG0783|consensus 97.9 1E-05 2.2E-10 67.1 3.4 59 15-73 33-97 (1267)
62 KOG0508|consensus 97.9 9.9E-06 2.2E-10 63.8 2.9 40 32-72 121-160 (615)
63 KOG0514|consensus 97.8 1.7E-05 3.6E-10 60.9 3.7 41 32-73 344-384 (452)
64 KOG4177|consensus 97.8 1.9E-05 4.1E-10 66.5 3.7 42 31-73 576-617 (1143)
65 KOG0510|consensus 97.8 3.5E-05 7.6E-10 63.4 4.9 56 17-73 105-165 (929)
66 KOG1710|consensus 97.8 5.8E-05 1.2E-09 56.8 5.2 43 31-73 48-90 (396)
67 KOG0508|consensus 97.7 1E-05 2.3E-10 63.6 1.2 56 17-73 134-194 (615)
68 PHA02792 ankyrin-like protein; 97.7 5.1E-05 1.1E-09 60.8 4.5 38 32-70 414-451 (631)
69 COG0666 Arp FOG: Ankyrin repea 97.7 5.9E-05 1.3E-09 48.0 3.9 43 30-73 75-117 (235)
70 KOG0512|consensus 97.6 4E-05 8.7E-10 54.3 2.4 41 31-72 133-173 (228)
71 KOG4214|consensus 97.6 7E-05 1.5E-09 48.5 3.2 42 31-73 37-78 (117)
72 TIGR00870 trp transient-recept 97.6 3.3E-05 7.1E-10 61.0 1.9 41 31-72 178-218 (743)
73 cd00204 ANK ankyrin repeats; 97.6 0.00013 2.8E-09 42.9 3.8 40 32-72 44-83 (126)
74 TIGR00870 trp transient-recept 97.5 0.00011 2.4E-09 58.1 3.9 43 29-72 18-63 (743)
75 PHA02792 ankyrin-like protein; 97.5 0.00017 3.6E-09 57.9 4.7 30 42-72 391-420 (631)
76 PF13606 Ank_3: Ankyrin repeat 97.5 5.3E-05 1.1E-09 38.0 1.3 13 61-73 1-13 (30)
77 PF00023 Ank: Ankyrin repeat H 97.4 6.5E-05 1.4E-09 37.7 1.3 13 61-73 1-13 (33)
78 KOG0195|consensus 97.4 0.00013 2.8E-09 55.2 3.1 42 31-73 37-78 (448)
79 PF00023 Ank: Ankyrin repeat H 97.4 0.0002 4.4E-09 35.9 2.8 29 31-59 5-33 (33)
80 cd00204 ANK ankyrin repeats; 97.4 0.00032 6.9E-09 41.1 3.9 42 31-73 10-51 (126)
81 PF13606 Ank_3: Ankyrin repeat 97.3 0.0002 4.4E-09 35.9 2.3 26 31-56 5-30 (30)
82 KOG0502|consensus 97.0 0.00059 1.3E-08 49.9 2.8 55 18-73 178-237 (296)
83 KOG0522|consensus 96.9 0.0011 2.3E-08 52.6 3.7 42 31-73 58-99 (560)
84 KOG0502|consensus 96.8 0.00096 2.1E-08 48.8 2.3 48 20-73 157-204 (296)
85 KOG0506|consensus 96.7 0.0009 2E-08 53.0 2.1 44 29-73 507-550 (622)
86 KOG0511|consensus 96.5 0.0031 6.7E-08 49.0 3.8 44 29-73 37-80 (516)
87 KOG4214|consensus 96.4 0.0079 1.7E-07 39.0 4.4 60 2-67 37-105 (117)
88 KOG3676|consensus 96.3 0.0035 7.5E-08 51.5 3.1 32 38-70 250-281 (782)
89 KOG0514|consensus 96.1 0.0053 1.1E-07 47.4 2.8 55 18-73 297-351 (452)
90 KOG0520|consensus 96.0 0.0025 5.3E-08 53.4 0.9 25 48-73 628-652 (975)
91 KOG0521|consensus 95.8 0.0055 1.2E-07 50.3 2.0 42 31-73 659-700 (785)
92 KOG0818|consensus 95.4 0.016 3.5E-07 46.3 3.3 42 31-73 170-211 (669)
93 KOG0507|consensus 95.2 0.01 2.2E-07 49.0 1.8 41 32-73 119-159 (854)
94 KOG0507|consensus 93.9 0.053 1.1E-06 45.0 3.0 47 21-73 80-126 (854)
95 KOG0705|consensus 93.6 0.072 1.6E-06 43.3 3.1 43 30-73 663-705 (749)
96 KOG0705|consensus 93.3 0.085 1.8E-06 42.9 3.1 43 30-73 626-672 (749)
97 KOG0506|consensus 92.4 0.075 1.6E-06 42.4 1.6 44 29-73 540-584 (622)
98 KOG4369|consensus 90.3 0.23 5.1E-06 43.6 2.6 40 32-72 761-800 (2131)
99 smart00248 ANK ankyrin repeats 88.4 0.64 1.4E-05 19.6 2.3 24 32-55 6-29 (30)
100 KOG0522|consensus 87.9 0.34 7.4E-06 38.8 1.9 26 47-73 41-66 (560)
101 KOG2384|consensus 87.4 0.68 1.5E-05 33.2 2.9 39 33-72 17-56 (223)
102 KOG1710|consensus 87.2 0.6 1.3E-05 35.6 2.7 43 30-73 14-56 (396)
103 KOG0783|consensus 86.5 0.74 1.6E-05 39.3 3.1 62 8-71 61-128 (1267)
104 KOG0782|consensus 85.8 0.46 1E-05 39.2 1.6 43 28-71 899-943 (1004)
105 KOG0515|consensus 83.4 1.5 3.2E-05 35.9 3.5 48 24-72 546-593 (752)
106 KOG2505|consensus 82.6 0.8 1.7E-05 36.8 1.7 40 30-70 432-471 (591)
107 KOG3676|consensus 76.9 2.2 4.9E-05 35.6 2.6 62 7-73 251-319 (782)
108 KOG0521|consensus 76.5 2.3 5E-05 35.3 2.6 54 17-71 673-731 (785)
109 KOG4369|consensus 73.8 6.2 0.00013 35.4 4.5 59 15-73 259-320 (2131)
110 PF09012 FeoC: FeoC like trans 73.8 3.8 8.3E-05 23.4 2.4 42 11-52 1-43 (69)
111 cd08313 Death_TNFR1 Death doma 71.0 11 0.00024 22.7 4.1 34 3-37 3-36 (80)
112 PF14493 HTH_40: Helix-turn-he 68.0 13 0.00029 22.1 4.0 40 18-57 8-47 (91)
113 PRK00179 pgi glucose-6-phospha 64.1 13 0.00029 29.7 4.3 49 21-72 53-101 (548)
114 PF04695 Pex14_N: Peroxisomal 63.0 6.3 0.00014 25.7 2.0 29 12-40 23-51 (136)
115 PF01726 LexA_DNA_bind: LexA D 61.8 20 0.00044 20.6 3.8 42 9-51 9-54 (65)
116 PF07879 PHB_acc_N: PHB/PHA ac 61.5 4.8 0.0001 23.8 1.1 27 37-63 18-44 (64)
117 PLN02649 glucose-6-phosphate i 58.5 18 0.00039 29.1 4.2 49 21-72 55-103 (560)
118 PRK14136 recX recombination re 58.2 19 0.0004 27.2 4.0 38 13-50 229-266 (309)
119 PF06794 UPF0270: Uncharacteri 58.1 20 0.00043 21.4 3.4 48 1-52 3-50 (70)
120 PF14076 DUF4258: Domain of un 57.8 14 0.0003 20.4 2.6 18 15-32 6-23 (73)
121 PF13581 HATPase_c_2: Histidin 57.2 22 0.00048 21.5 3.6 45 1-45 1-45 (125)
122 PTZ00430 glucose-6-phosphate i 57.0 17 0.00036 29.3 3.7 48 21-72 50-98 (552)
123 PF13348 Y_phosphatase3C: Tyro 55.7 16 0.00035 20.5 2.6 19 16-34 46-65 (68)
124 KOG2505|consensus 55.1 13 0.00028 30.1 2.8 31 42-73 405-441 (591)
125 KOG0782|consensus 54.7 16 0.00034 30.6 3.3 39 31-70 937-975 (1004)
126 PF02631 RecX: RecX family; I 54.5 29 0.00064 21.5 3.9 23 12-34 45-67 (121)
127 PRK14095 pgi glucose-6-phospha 53.2 25 0.00054 28.2 4.1 51 21-72 53-106 (533)
128 PF09269 DUF1967: Domain of un 52.0 14 0.00029 21.5 2.0 19 7-25 28-46 (69)
129 PF09868 DUF2095: Uncharacteri 51.4 24 0.00052 23.4 3.2 29 6-35 74-104 (128)
130 KOG2536|consensus 51.2 36 0.00078 25.2 4.4 30 8-37 214-243 (263)
131 PF02330 MAM33: Mitochondrial 51.0 37 0.0008 23.1 4.3 27 8-34 157-183 (204)
132 PF08970 Sda: Sporulation inhi 50.6 20 0.00043 19.8 2.4 20 7-26 21-40 (46)
133 TIGR03595 Obg_CgtA_exten Obg f 49.7 20 0.00044 20.8 2.5 19 7-25 28-46 (69)
134 TIGR01848 PHA_reg_PhaR polyhyd 49.6 10 0.00022 24.5 1.2 27 37-63 18-44 (107)
135 cd07923 Gallate_dioxygenase_C 47.9 37 0.00081 21.4 3.6 33 16-55 29-61 (94)
136 PF00342 PGI: Phosphoglucose i 47.8 18 0.00039 28.4 2.6 49 21-72 4-52 (486)
137 cd07921 PCA_45_Doxase_A_like S 47.8 31 0.00066 22.2 3.2 47 16-70 37-87 (106)
138 PF00742 Homoserine_dh: Homose 45.9 15 0.00033 25.1 1.7 29 10-40 24-52 (179)
139 PRK04966 hypothetical protein; 45.7 26 0.00057 21.0 2.5 48 1-52 3-50 (72)
140 PF09435 DUF2015: Fungal prote 44.4 60 0.0013 21.6 4.3 39 8-55 83-121 (128)
141 PF02829 3H: 3H domain; Inter 42.8 27 0.00059 21.9 2.4 20 6-25 78-97 (98)
142 PF05396 Phage_T7_Capsid: Phag 41.8 74 0.0016 21.0 4.4 39 10-50 47-85 (123)
143 PF08279 HTH_11: HTH domain; 41.4 30 0.00066 18.2 2.2 47 13-59 4-51 (55)
144 PF08784 RPA_C: Replication pr 41.0 28 0.0006 21.0 2.2 50 9-58 50-100 (102)
145 cd04400 RhoGAP_fBEM3 RhoGAP_fB 41.0 31 0.00067 23.2 2.6 47 11-59 25-72 (190)
146 PRK00304 hypothetical protein; 41.0 29 0.00062 21.1 2.2 47 1-52 3-49 (75)
147 PF14701 hDGE_amylase: glucano 40.7 18 0.0004 28.2 1.6 29 39-71 381-411 (423)
148 PRK00117 recX recombination re 40.3 77 0.0017 20.4 4.4 24 12-35 78-101 (157)
149 PF13812 PPR_3: Pentatricopept 39.8 22 0.00047 16.4 1.3 14 13-26 21-34 (34)
150 PF06163 DUF977: Bacterial pro 39.3 1.1E+02 0.0024 20.3 4.9 48 7-54 9-57 (127)
151 PHA02591 hypothetical protein; 39.3 64 0.0014 20.0 3.6 29 9-37 45-73 (83)
152 PF01381 HTH_3: Helix-turn-hel 38.4 45 0.00097 17.3 2.6 21 15-35 1-21 (55)
153 PF13309 HTH_22: HTH domain 38.2 77 0.0017 17.9 4.1 38 9-52 1-38 (64)
154 cd08316 Death_FAS_TNFRSF6 Deat 37.9 87 0.0019 19.5 4.1 23 15-37 23-45 (97)
155 PF13443 HTH_26: Cro/C1-type H 36.9 41 0.00088 18.1 2.3 20 15-34 2-21 (63)
156 PHA03373 tegument protein; Pro 36.6 78 0.0017 23.2 4.2 32 6-37 32-63 (247)
157 PF13720 Acetyltransf_11: Udp 36.6 26 0.00057 21.0 1.6 20 18-37 22-41 (83)
158 PF07052 Hep_59: Hepatocellula 36.1 27 0.00058 21.7 1.6 18 7-24 12-29 (104)
159 PRK12423 LexA repressor; Provi 36.0 1.3E+02 0.0027 20.4 5.1 44 9-52 9-55 (202)
160 TIGR01987 HI0074 nucleotidyltr 35.4 36 0.00078 22.0 2.2 43 13-55 43-89 (123)
161 KOG3609|consensus 34.8 21 0.00046 30.2 1.2 43 29-72 26-72 (822)
162 smart00352 POU Found in Pit-Oc 34.3 64 0.0014 19.5 3.0 32 3-34 4-35 (75)
163 PF13373 DUF2407_C: DUF2407 C- 33.9 39 0.00085 22.4 2.2 17 18-34 5-21 (140)
164 PRK14135 recX recombination re 33.9 83 0.0018 22.0 4.0 35 11-45 124-159 (263)
165 KOG4024|consensus 33.8 97 0.0021 22.8 4.3 44 8-51 216-266 (266)
166 PRK12686 carbamate kinase; Rev 33.8 31 0.00068 25.7 1.9 24 1-24 73-103 (312)
167 COG1654 BirA Biotin operon rep 33.8 1.1E+02 0.0024 18.4 4.7 40 24-64 20-59 (79)
168 PF08220 HTH_DeoR: DeoR-like h 33.8 85 0.0018 17.1 4.0 40 13-52 3-43 (57)
169 KOG3120|consensus 32.1 88 0.0019 23.1 3.9 36 17-52 64-101 (256)
170 PF07746 LigA: Aromatic-ring-o 31.9 62 0.0013 19.9 2.7 32 16-54 22-53 (88)
171 PF14615 Rsa3: Ribosome-assemb 31.8 69 0.0015 17.6 2.6 38 14-54 6-45 (47)
172 PF06888 Put_Phosphatase: Puta 31.6 1.1E+02 0.0023 21.8 4.3 43 13-55 47-93 (234)
173 PRK12332 tsf elongation factor 31.4 44 0.00095 23.3 2.2 32 24-55 3-34 (198)
174 TIGR00116 tsf translation elon 31.4 42 0.00091 24.8 2.2 32 24-55 3-34 (290)
175 PRK07027 cobalamin biosynthesi 31.4 71 0.0015 20.4 3.1 41 7-47 15-59 (126)
176 cd01760 RBD Ubiquitin-like dom 30.6 65 0.0014 19.0 2.6 27 8-34 19-45 (72)
177 PF11387 DUF2795: Protein of u 29.9 95 0.002 16.5 3.0 30 9-38 7-36 (44)
178 COG3089 Uncharacterized protei 29.6 85 0.0018 18.9 2.9 49 1-53 3-51 (72)
179 cd08315 Death_TRAILR_DR4_DR5 D 29.5 1.2E+02 0.0027 18.5 3.8 32 15-47 22-53 (96)
180 cd07922 CarBa CarBa is the A s 28.6 1.4E+02 0.0029 18.2 3.8 31 16-53 28-58 (81)
181 PRK05412 putative nucleotide-b 28.3 57 0.0012 22.5 2.3 21 10-30 58-78 (161)
182 cd08784 Death_DRs Death Domain 28.3 1.3E+02 0.0028 17.6 3.9 24 15-38 14-37 (79)
183 PRK09585 anmK anhydro-N-acetyl 28.1 77 0.0017 24.2 3.2 61 8-69 41-105 (365)
184 TIGR03070 couple_hipB transcri 27.6 95 0.0021 15.8 3.3 24 11-34 3-26 (58)
185 PF03158 DUF249: Multigene fam 27.0 67 0.0015 22.7 2.5 37 30-73 145-181 (192)
186 PF01152 Bac_globin: Bacterial 27.0 93 0.002 18.9 3.0 30 8-37 82-111 (120)
187 KOG3836|consensus 25.9 19 0.0004 29.5 -0.5 30 43-73 411-440 (605)
188 PF08360 TetR_C_5: QacR-like p 25.7 1.4E+02 0.0031 19.1 3.8 47 8-55 35-81 (131)
189 PRK05244 Der GTPase activator; 25.6 1E+02 0.0023 21.5 3.2 42 9-52 131-172 (177)
190 PRK14137 recX recombination re 25.3 1.5E+02 0.0033 20.5 4.1 37 14-50 106-143 (195)
191 COG3454 Metal-dependent hydrol 25.2 3.2E+02 0.0068 21.3 6.0 57 11-70 175-239 (377)
192 PF00070 Pyr_redox: Pyridine n 24.9 56 0.0012 18.4 1.6 19 7-25 38-56 (80)
193 PRK09377 tsf elongation factor 24.7 64 0.0014 23.9 2.2 33 23-55 3-35 (290)
194 COG0017 AsnS Aspartyl/asparagi 24.7 82 0.0018 24.8 2.8 32 9-40 366-397 (435)
195 PF08780 NTase_sub_bind: Nucle 24.5 89 0.0019 19.9 2.6 40 11-50 43-84 (124)
196 TIGR01924 rsbW_low_gc serine-p 24.1 1.3E+02 0.0028 19.5 3.4 44 2-45 13-56 (159)
197 cd07321 Extradiol_Dioxygenase_ 23.9 1.1E+02 0.0025 18.0 2.8 32 16-54 27-58 (77)
198 PF01515 PTA_PTB: Phosphate ac 23.8 1.3E+02 0.0028 22.3 3.6 60 4-68 69-132 (319)
199 KOG0511|consensus 23.5 66 0.0014 25.6 2.1 42 22-64 58-104 (516)
200 PF05778 Apo-CIII: Apolipoprot 23.4 1.8E+02 0.0039 17.5 3.7 46 6-53 2-47 (70)
201 PRK06813 homoserine dehydrogen 23.0 58 0.0012 24.5 1.7 30 10-41 178-207 (346)
202 TIGR00498 lexA SOS regulatory 22.9 2.1E+02 0.0046 18.9 4.3 45 8-52 8-55 (199)
203 COG5394 Uncharacterized protei 22.6 61 0.0013 22.8 1.6 27 38-64 28-54 (193)
204 COG2137 OraA Uncharacterized p 22.4 1.9E+02 0.0041 19.8 4.0 36 13-48 88-124 (174)
205 COG2323 Predicted membrane pro 22.3 91 0.002 22.3 2.5 35 14-48 103-137 (224)
206 cd04393 RhoGAP_FAM13A1a RhoGAP 22.2 1.5E+02 0.0032 19.8 3.4 45 10-56 22-66 (189)
207 cd07925 LigA_like_1 The A subu 22.2 1.8E+02 0.004 18.7 3.7 47 16-70 37-87 (106)
208 PF01706 FliG_C: FliG C-termin 22.1 1.7E+02 0.0037 17.9 3.5 41 8-52 65-106 (110)
209 KOG0360|consensus 22.0 87 0.0019 25.4 2.6 31 25-55 259-289 (545)
210 KOG3609|consensus 22.0 1.9E+02 0.0042 24.7 4.6 45 29-73 89-142 (822)
211 cd08815 Death_TNFRSF25_DR3 Dea 22.0 1.8E+02 0.0039 17.6 3.5 38 14-51 13-53 (77)
212 COG0264 Tsf Translation elonga 22.0 77 0.0017 23.8 2.1 33 23-55 3-35 (296)
213 PF08312 cwf21: cwf21 domain; 21.9 90 0.0019 16.9 1.9 20 14-33 15-34 (46)
214 PRK04069 serine-protein kinase 21.7 1.7E+02 0.0036 18.9 3.5 47 2-52 13-59 (161)
215 PF09350 DUF1992: Domain of un 21.6 1.3E+02 0.0029 17.5 2.7 34 2-35 24-61 (71)
216 PF04964 Flp_Fap: Flp/Fap pili 21.6 66 0.0014 17.2 1.3 13 57-70 3-15 (46)
217 PF04703 FaeA: FaeA-like prote 21.5 1.7E+02 0.0037 16.7 3.2 41 12-52 2-44 (62)
218 PHA02682 ORF080 virion core pr 21.3 1.8E+02 0.0038 21.3 3.8 42 8-51 206-259 (280)
219 COG3078 Uncharacterized protei 21.3 80 0.0017 21.8 2.0 22 9-30 132-153 (169)
220 PF04461 DUF520: Protein of un 21.2 94 0.002 21.4 2.3 21 10-30 58-78 (160)
221 TIGR01796 CM_mono_aroH monofun 21.0 97 0.0021 20.2 2.2 22 8-29 19-40 (117)
222 COG0166 Pgi Glucose-6-phosphat 20.7 1.6E+02 0.0034 23.2 3.7 45 23-71 12-56 (446)
223 KOG2446|consensus 20.5 1.1E+02 0.0024 24.8 2.8 49 21-72 58-106 (546)
224 PF12368 DUF3650: Protein of u 20.5 1.3E+02 0.0029 14.9 2.3 15 17-31 9-23 (28)
225 PF09377 SBDS_C: SBDS protein 20.3 68 0.0015 20.5 1.4 35 11-49 24-58 (125)
226 PRK14663 acpS 4'-phosphopantet 20.3 1.7E+02 0.0037 18.2 3.2 33 3-35 1-36 (116)
227 PRK12338 hypothetical protein; 20.1 99 0.0021 23.2 2.4 21 6-26 293-313 (319)
No 1
>KOG0505|consensus
Probab=99.59 E-value=1.8e-15 Score=117.17 Aligned_cols=69 Identities=38% Similarity=0.556 Sum_probs=63.3
Q ss_pred CccccccchhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 1 MPYDICEAEAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 1 mp~Diaede~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
||||+||++.|+++|+.+|..+||+ +++.|.++++.|+.|++.|+..|.+.++++. .|+|+||+|+..|
T Consensus 141 ~P~dl~e~ea~~~~l~~~~~r~gi~---iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~-rG~T~lHvAaa~G 209 (527)
T KOG0505|consen 141 MPYDLAEDEATLDVLETEMARQGID---IEAARKAEEQTMLDDARQWLNAGAELDARHA-RGATALHVAAANG 209 (527)
T ss_pred CccccccCcchhHHHHHHHHHhccc---HHHHhhhhHHHHHHHHHHHHhcccccccccc-ccchHHHHHHhhh
Confidence 8999999999999999999999999 8999999999999999998888888888888 5888888887765
No 2
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.15 E-value=3.3e-11 Score=66.73 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=34.0
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++.+++.|.++.+++|+++|+|+|.+|. +|.||||+|+.+|
T Consensus 4 ~lh~A~~~g~~~~~~~Ll~~~~din~~d~-~g~t~lh~A~~~g 45 (54)
T PF13637_consen 4 PLHWAARSGNLEIVKLLLEHGADINAQDE-DGRTPLHYAAKNG 45 (54)
T ss_dssp HHHHHHHTT-HHHHHHHHHTTSGTT-B-T-TS--HHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcc
Confidence 36778889999999999999999999999 9999999999876
No 3
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.96 E-value=5.2e-10 Score=62.88 Aligned_cols=38 Identities=24% Similarity=0.139 Sum_probs=27.9
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHh
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNG 69 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~A 69 (73)
.++.|+..|..+.|++|++.|+|+|.+|. +|+||||+|
T Consensus 19 ~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~-~G~Tpl~~A 56 (56)
T PF13857_consen 19 PLHWAARYGHSEVVRLLLQNGADPNAKDK-DGQTPLHYA 56 (56)
T ss_dssp HHHHHHHHT-HHHHHHHHHCT--TT---T-TS--HHHH-
T ss_pred HHHHHHHcCcHHHHHHHHHCcCCCCCCcC-CCCCHHHhC
Confidence 48999999999999999999999999999 999999998
No 4
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.93 E-value=1.7e-09 Score=63.81 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=42.5
Q ss_pred cCCCHHh-HHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 22 RGVTQAL-IDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 22 ~Gi~~~~-~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.|.+... -..+.-|...|.++.+++|+++|+++|.+|. +|+||||+|+.+|
T Consensus 19 ~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~ 70 (89)
T PF12796_consen 19 KGADINLGNTALHYAAENGNLEIVKLLLENGADINSQDK-NGNTALHYAAENG 70 (89)
T ss_dssp TTSTTTSSSBHHHHHHHTTTHHHHHHHHHTTTCTT-BST-TSSBHHHHHHHTT
T ss_pred CcCCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccCC-CCCCHHHHHHHcC
Confidence 5544332 2468889999999999999999999999998 9999999999875
No 5
>KOG0515|consensus
Probab=98.84 E-value=1.9e-09 Score=85.13 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=40.4
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.|+.|.=-|+.+.|++||..|++||+.|. +||||||.||.||
T Consensus 586 aLHNAiCaghyeIVkFLi~~ganVNa~DS-dGWTPLHCAASCN 627 (752)
T KOG0515|consen 586 ALHNAICAGHYEIVKFLIEFGANVNAADS-DGWTPLHCAASCN 627 (752)
T ss_pred HHhhhhhcchhHHHHHHHhcCCcccCccC-CCCchhhhhhhcC
Confidence 68999999999999999999999999999 9999999999886
No 6
>PHA02730 ankyrin-like protein; Provisional
Probab=98.70 E-value=1.8e-08 Score=80.52 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=55.1
Q ss_pred cccchhHHHHHHHHHHHc-CCC-H---HhHHHHHhCchhc---cHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 5 ICEAEAALDHIEAEMAAR-GVT-Q---ALIDETRAAPETR---MLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 5 iaede~~~~~ie~~m~~~-Gi~-~---~~~~~~r~a~e~~---~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
+++.+-+...+.-+++.. ||. + .--..++.|+..+ ..+.|++||++|||+|.+|. .|+||||+|+..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~-~G~TPLh~Aa~~~ 88 (672)
T PHA02730 13 LLDEDVTYKKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNN-EGLTPLGVYSKRK 88 (672)
T ss_pred HhcccchHHHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCC-CCCChHHHHHHcC
Confidence 456777888888888888 777 2 1124588888776 59999999999999999999 9999999998743
No 7
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.60 E-value=1.7e-08 Score=56.63 Aligned_cols=26 Identities=31% Similarity=0.403 Sum_probs=13.1
Q ss_pred HHHcC-CCCCCCCCCCCchHHHHhhhcC
Q psy1719 47 EAARG-QDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 47 ll~~G-advn~~d~~~G~TpLH~Aa~~~ 73 (73)
||++| +++|.+|. .|.||||+|+.+|
T Consensus 1 LL~~~~~~~n~~d~-~G~T~LH~A~~~g 27 (56)
T PF13857_consen 1 LLEHGPADVNAQDK-YGNTPLHWAARYG 27 (56)
T ss_dssp -----T--TT---T-TS--HHHHHHHHT
T ss_pred CCccCcCCCcCcCC-CCCcHHHHHHHcC
Confidence 67888 99999999 9999999999876
No 8
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.60 E-value=4.6e-08 Score=73.15 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=40.1
Q ss_pred HHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 30 DETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 30 ~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
..++.|++.|.++.|+.|+++|+|+|.+|. .|.||||+|+..|
T Consensus 39 tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~-~g~TpLh~A~~~g 81 (477)
T PHA02878 39 IPLHQAVEARNLDVVKSLLTRGHNVNQPDH-RDLTPLHIICKEP 81 (477)
T ss_pred chHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCc
Confidence 358999999999999999999999999999 9999999999764
No 9
>KOG0509|consensus
Probab=98.58 E-value=2.3e-08 Score=79.08 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=28.3
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
++.|+=.+.++.+++|+++|||||+.....|+||||||+++|
T Consensus 82 LHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G 123 (600)
T KOG0509|consen 82 LHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG 123 (600)
T ss_pred eeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence 566666677777777777777777666446677777776664
No 10
>PHA02946 ankyin-like protein; Provisional
Probab=98.54 E-value=8e-08 Score=72.55 Aligned_cols=41 Identities=17% Similarity=-0.021 Sum_probs=37.3
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
.++.|++.+..+.|++|+++|+|+|.+|. +|.||||+|+.+
T Consensus 75 pLh~Aa~~g~~eiv~lLL~~GAdin~~d~-~g~TpLh~A~~~ 115 (446)
T PHA02946 75 PLHIASKINNNRIVAMLLTHGADPNACDK-QHKTPLYYLSGT 115 (446)
T ss_pred HHHHHHHcCCHHHHHHHHHCcCCCCCCCC-CCCCHHHHHHHc
Confidence 47889999999999999999999999999 999999998764
No 11
>PHA03095 ankyrin-like protein; Provisional
Probab=98.49 E-value=1.4e-07 Score=69.34 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=43.8
Q ss_pred HHHHcCCCHHhHH-----HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 18 EMAARGVTQALID-----ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 18 ~m~~~Gi~~~~~~-----~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.+-+.|++....+ .++.|+..|..+.|++|+++|+|+|.+|. +|.||||+|+..|
T Consensus 242 ~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~-~g~tpl~~A~~~~ 301 (471)
T PHA03095 242 PLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSS-DGNTPLSLMVRNN 301 (471)
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHhC
Confidence 3445565543333 57888889999999999999999999999 9999999998764
No 12
>KOG4177|consensus
Probab=98.49 E-value=1.1e-07 Score=79.63 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=50.4
Q ss_pred cccchhHHHHHHHHHHHcCCCHHhHH-----HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 5 ICEAEAALDHIEAEMAARGVTQALID-----ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 5 iaede~~~~~ie~~m~~~Gi~~~~~~-----~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
++.++.+........ ++|+.+..-. .++-|.++|.+..||+|+++|||+|.+++ .|+||||.||..|
T Consensus 513 la~~~~~v~~~~~l~-~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~-~G~TPLH~Aa~~G 584 (1143)
T KOG4177|consen 513 LAADEDTVKVAKILL-EHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDK-LGYTPLHQAAQQG 584 (1143)
T ss_pred hhhhhhhHHHHHHHh-hcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCC-CCCChhhHHHHcC
Confidence 444555555554443 2344432222 48899999999999999999999999998 9999999999876
No 13
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.48 E-value=2.8e-07 Score=71.71 Aligned_cols=44 Identities=16% Similarity=0.025 Sum_probs=37.8
Q ss_pred HHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 29 IDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 29 ~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
...++.+..++.++.+++|++.|+|+|.+|. .|+||||+|+.+|
T Consensus 146 ~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~-~G~TpLh~Aa~~G 189 (682)
T PHA02876 146 MKLIKERIQQDELLIAEMLLEGGADVNAKDI-YCITPIHYAAERG 189 (682)
T ss_pred hHHHHHHHHCCcHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHCC
Confidence 3446667788999999999999999999999 9999999999876
No 14
>KOG4412|consensus
Probab=98.46 E-value=1.1e-07 Score=67.19 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=18.5
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHh
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNG 69 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~A 69 (73)
+++|+..|.|..+++|+..|+.+|.+|. .|+||||.|
T Consensus 143 lHRAAavGklkvie~Li~~~a~~n~qDk-~G~TpL~~a 179 (226)
T KOG4412|consen 143 LHRAAAVGKLKVIEYLISQGAPLNTQDK-YGFTPLHHA 179 (226)
T ss_pred hHHHHhccchhhHHHHHhcCCCCCcccc-cCccHHHHH
Confidence 4444444555555555555555555555 555555544
No 15
>KOG0512|consensus
Probab=98.45 E-value=1.1e-07 Score=67.00 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=39.4
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.+++|+..+.+..|+.|+.+||+.+++-. .||||||-|+.|+
T Consensus 100 pLHRAaYn~h~div~~ll~~gAn~~a~T~-~GWTPLhSAckWn 141 (228)
T KOG0512|consen 100 PLHRAAYNGHLDIVHELLLSGANKEAKTN-EGWTPLHSACKWN 141 (228)
T ss_pred HHHHHHhcCchHHHHHHHHccCCcccccc-cCccchhhhhccc
Confidence 47899999999999999999999999999 9999999999885
No 16
>KOG0509|consensus
Probab=98.43 E-value=1.8e-07 Score=74.16 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=44.9
Q ss_pred HHHcCCCHHhHH------HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 19 MAARGVTQALID------ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 19 m~~~Gi~~~~~~------~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
+-++|-+++.+. .++.|+.+|.+..|++|+++|||++.+|. +|-||||+|+++|
T Consensus 97 li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~-~G~~~lHla~~~~ 156 (600)
T KOG0509|consen 97 LISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDK-QGLTPLHLAAQFG 156 (600)
T ss_pred HHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecC-CCCcHHHHHHHhC
Confidence 334555544444 47999999999999999999999999999 9999999999875
No 17
>PHA02795 ankyrin-like protein; Provisional
Probab=98.42 E-value=2.5e-07 Score=71.03 Aligned_cols=42 Identities=10% Similarity=-0.088 Sum_probs=31.6
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.+..|+..|..+.|++|+++|+++|.+|. .|+||||+|+.+|
T Consensus 224 pLh~Aa~~g~~eiVelLL~~GAdIN~~d~-~G~TpLh~Aa~~g 265 (437)
T PHA02795 224 LLYRAIYAGYIDLVSWLLENGANVNAVMS-NGYTCLDVAVDRG 265 (437)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcC
Confidence 36667777777777777878888887777 7788888777654
No 18
>PHA02791 ankyrin-like protein; Provisional
Probab=98.42 E-value=2.8e-07 Score=66.61 Aligned_cols=42 Identities=14% Similarity=-0.024 Sum_probs=31.3
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.+..|+..+..+.|+.|+++|+++|.+|. .|+||||+|+.+|
T Consensus 64 pLh~Aa~~g~~eiV~lLL~~Gadvn~~d~-~G~TpLh~Aa~~g 105 (284)
T PHA02791 64 PLHQAATLEDTKIVKILLFSGMDDSQFDD-KGNTALYYAVDSG 105 (284)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcC
Confidence 46667777777777777777777777777 7777777777654
No 19
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.40 E-value=2.3e-07 Score=59.78 Aligned_cols=40 Identities=18% Similarity=-0.013 Sum_probs=20.9
Q ss_pred HHhCchhccHHHHHHHHH-cCCCCCCCCCCCCchHHHHhhhc
Q psy1719 32 TRAAPETRMLEDLAAEAA-RGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~-~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
++.|+..+..+.+++|++ .|+++|.+|. .|.||||+|+..
T Consensus 96 Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~-~g~tpL~~A~~~ 136 (154)
T PHA02736 96 LHIAVYTQNYELATWLCNQPGVNMEILNY-AFKTPYYVACER 136 (154)
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCCccccC-CCCCHHHHHHHc
Confidence 444555555555555554 3555555555 555555555543
No 20
>KOG4412|consensus
Probab=98.39 E-value=2.6e-07 Score=65.37 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=53.4
Q ss_pred ccccccchhHHHHHHHHHHHcCCCHHhHH-----HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 2 PYDICEAEAALDHIEAEMAARGVTQALID-----ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 2 p~Diaede~~~~~ie~~m~~~Gi~~~~~~-----~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
|+-||-.-.-.++++.-+.+.|.++..+. -++-|+-+|.++.+++|+.+|+.++.+|. +|+||||-||.-|
T Consensus 75 Plhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~-~~qtplHRAAavG 150 (226)
T KOG4412|consen 75 PLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDK-QGQTPLHRAAAVG 150 (226)
T ss_pred hhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCccccc-ccCchhHHHHhcc
Confidence 55666544444455555555454433332 38999999999999999999999999999 9999999998754
No 21
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.38 E-value=3.9e-07 Score=66.44 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=23.4
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
++.|+..+..+.|++|+++|+++|.+++ +|.||||+|+..
T Consensus 39 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~~~t~L~~A~~~ 78 (413)
T PHA02875 39 IKLAMKFRDSEAIKLLMKHGAIPDVKYP-DIESELHDAVEE 78 (413)
T ss_pred HHHHHHcCCHHHHHHHHhCCCCccccCC-CcccHHHHHHHC
Confidence 4555555566666666666666665555 556666666554
No 22
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.37 E-value=3.1e-07 Score=60.74 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=27.8
Q ss_pred HHhCchhccHHH---HHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 32 TRAAPETRMLED---LAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 32 ~r~a~e~~~l~~---v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
++.|++.+..+. +++|++.|+++|.++...|.||||+|+.+|
T Consensus 61 Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g 105 (166)
T PHA02743 61 THMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTK 105 (166)
T ss_pred HHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhC
Confidence 566666655433 677777777777776326777777777654
No 23
>KOG0505|consensus
Probab=98.37 E-value=1.8e-07 Score=73.09 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=39.8
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++-++.+|..+..++|+++|.+++.+|. +||||||.||+||
T Consensus 201 ~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~-dgWtPlHAAA~Wg 242 (527)
T KOG0505|consen 201 ALHVAAANGYTEVAALLLQAGYSVNIKDY-DGWTPLHAAAHWG 242 (527)
T ss_pred HHHHHHhhhHHHHHHHHHHhccCcccccc-cCCCcccHHHHhh
Confidence 47888999999999999999999999999 9999999999996
No 24
>PHA02741 hypothetical protein; Provisional
Probab=98.37 E-value=5.1e-07 Score=59.53 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=21.1
Q ss_pred HHhCchhcc----HHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 32 TRAAPETRM----LEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 32 ~r~a~e~~~----l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
++.|+..+. .+.+++|++.|+++|.++...|+||||+|+.+
T Consensus 64 Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~ 108 (169)
T PHA02741 64 IHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHR 108 (169)
T ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHc
Confidence 444444444 34455555555555555422555555555543
No 25
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.37 E-value=3.9e-07 Score=68.65 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=37.9
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
++.|+..+..+.|++|+++|+|+|.+|. .|.||||+|++.|
T Consensus 260 L~~Aa~~~~~~~v~~LL~~Gadin~~d~-~G~TpL~~A~~~~ 300 (494)
T PHA02989 260 LLISAKVDNYEAFNYLLKLGDDIYNVSK-DGDTVLTYAIKHG 300 (494)
T ss_pred HHHHHHhcCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcC
Confidence 6778889999999999999999999999 9999999999865
No 26
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.35 E-value=5.7e-07 Score=65.90 Aligned_cols=43 Identities=12% Similarity=-0.061 Sum_probs=34.4
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++.|+..+.++.+++|+++|||+|.++...|.||||+|+.+|
T Consensus 73 pLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~ 115 (300)
T PHA02884 73 PLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHG 115 (300)
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcC
Confidence 4777888888888888888888888864327888998888764
No 27
>PHA02795 ankyrin-like protein; Provisional
Probab=98.32 E-value=5e-07 Score=69.39 Aligned_cols=40 Identities=18% Similarity=0.050 Sum_probs=36.6
Q ss_pred HhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 33 RAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 33 r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
..+.+.+.++.++.|+++|||+|.+|. .|.||||+|+.+|
T Consensus 193 ~~a~~~~~~eIve~LIs~GADIN~kD~-~G~TpLh~Aa~~g 232 (437)
T PHA02795 193 FLVDEPTVLEIYKLCIPYIEDINQLDA-GGRTLLYRAIYAG 232 (437)
T ss_pred HHHHhcCHHHHHHHHHhCcCCcCcCCC-CCCCHHHHHHHcC
Confidence 456788899999999999999999999 9999999999875
No 28
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.31 E-value=7.6e-07 Score=66.62 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=29.1
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
++.|+..+.++.|++|++.|+++|.+|. .|.||||+|+..|
T Consensus 172 Lh~A~~~~~~~iv~~Ll~~gad~n~~d~-~g~tpLh~A~~~~ 212 (477)
T PHA02878 172 LHYATENKDQRLTELLLSYGANVNIPDK-TNNSPLHHAVKHY 212 (477)
T ss_pred HHHHHhCCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhC
Confidence 5666677777777777777777777777 7777777776543
No 29
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.31 E-value=5.4e-07 Score=72.23 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=22.9
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
++.|+..|..+.|+.|+++|+|+|.+|. +|+||||+|+.+
T Consensus 562 Lh~Aa~~g~~~~v~~Ll~~gadin~~d~-~G~TpL~~A~~~ 601 (823)
T PLN03192 562 LHIAASKGYEDCVLVLLKHACNVHIRDA-NGNTALWNAISA 601 (823)
T ss_pred HHHHHHcChHHHHHHHHhcCCCCCCcCC-CCCCHHHHHHHh
Confidence 4555555555555555555555555555 555555555544
No 30
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.31 E-value=7.1e-07 Score=65.09 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=22.1
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
++.|+..+..+.|+.|+++|+|+|.++. .|.||||+|+..
T Consensus 106 L~~A~~~~~~~iv~~Ll~~gad~~~~~~-~g~tpLh~A~~~ 145 (413)
T PHA02875 106 LHLATILKKLDIMKLLIARGADPDIPNT-DKFSPLHLAVMM 145 (413)
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHc
Confidence 4445555555555555555555555555 555555555543
No 31
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.29 E-value=8.8e-07 Score=57.07 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=35.8
Q ss_pred HHHhCchhccH---HHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRML---EDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l---~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++-++..+.+ +.+++|++.|+++|.++...|.||||+|+++|
T Consensus 58 ~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~ 103 (154)
T PHA02736 58 CVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQ 103 (154)
T ss_pred EEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhC
Confidence 36777777776 45889999999999998439999999999865
No 32
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.29 E-value=1.5e-06 Score=64.12 Aligned_cols=40 Identities=23% Similarity=0.115 Sum_probs=22.5
Q ss_pred HHhCchhcc--HHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 32 TRAAPETRM--LEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 32 ~r~a~e~~~--l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
++.++..+. .+.|+.|++.|+++|.+|. .|.||||+|+.+
T Consensus 219 l~~a~~~~~~~~~iv~~Ll~~g~din~~d~-~g~TpL~~A~~~ 260 (480)
T PHA03100 219 LHIAACYNEITLEVVNYLLSYGVPINIKDV-YGFTPLHYAVYN 260 (480)
T ss_pred HHHHHHhCcCcHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHc
Confidence 444455555 5555555555555555555 555555555544
No 33
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.28 E-value=7.3e-07 Score=71.47 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=39.1
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++.|+..|.++.++.|+++|+|+|.+|. +|.||||+|+..|
T Consensus 625 ~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~-~G~TpLh~A~~~g 666 (823)
T PLN03192 625 LLCTAAKRNDLTAMKELLKQGLNVDSEDH-QGATALQVAMAED 666 (823)
T ss_pred HHHHHHHhCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCC
Confidence 47789999999999999999999999999 9999999999865
No 34
>PHA02917 ankyrin-like protein; Provisional
Probab=98.27 E-value=1.5e-06 Score=69.03 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=50.9
Q ss_pred ccccc-chhHHHHHHHHHHHcCCCHHh-----HHHHHhC---chhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 3 YDICE-AEAALDHIEAEMAARGVTQAL-----IDETRAA---PETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 3 ~Diae-de~~~~~ie~~m~~~Gi~~~~-----~~~~r~a---~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
+|.-| ++-+++.+.+-+.+.++. .. -..++-+ +..|..+.|++|+++|+++|.++. .|+||||+|+.+|
T Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~-~g~TpL~~Aa~~g 79 (661)
T PHA02917 2 FDYLENEEVALDELKQMLRDRDPN-DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNW-RQLTPLEEYTNSR 79 (661)
T ss_pred ccchhhhHHHHHHHHHHHhccCcc-cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCC-CCCCHHHHHHHcC
Confidence 56666 445677776666543322 22 2346764 445889999999999999999999 9999999999764
No 35
>PHA02791 ankyrin-like protein; Provisional
Probab=98.27 E-value=9.1e-07 Score=63.97 Aligned_cols=43 Identities=5% Similarity=-0.114 Sum_probs=39.5
Q ss_pred HHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchH-HHHhhhcC
Q psy1719 30 DETRAAPETRMLEDLAAEAARGQDLEYKDPASGATP-SVNGLRYK 73 (73)
Q Consensus 30 ~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~Tp-LH~Aa~~~ 73 (73)
..++.|+..|.++.|+.|+++|+|+|.+|. .|.|| ||+|+.+|
T Consensus 162 TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~-~g~t~~L~~Aa~~~ 205 (284)
T PHA02791 162 SCIHITIKNGHVDMMILLLDYMTSTNTNNS-LLFIPDIKLAIDNK 205 (284)
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCcccC-CCCChHHHHHHHcC
Confidence 468999999999999999999999999999 99987 99999875
No 36
>PHA03095 ankyrin-like protein; Provisional
Probab=98.27 E-value=9.2e-07 Score=64.99 Aligned_cols=41 Identities=15% Similarity=0.021 Sum_probs=27.5
Q ss_pred HHhCchhc---cHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 32 TRAAPETR---MLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 32 ~r~a~e~~---~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
++.+...+ ..+.++.|+++|+|+|.++. .|.||||+|+.+|
T Consensus 51 Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~-~g~TpLh~A~~~~ 94 (471)
T PHA03095 51 LHLYLHYSSEKVKDIVRLLLEAGADVNAPER-CGFTPLHLYLYNA 94 (471)
T ss_pred HHHHHHhcCCChHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcC
Confidence 34444544 67777777777777777777 7777777777654
No 37
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.26 E-value=1.1e-06 Score=65.02 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=33.2
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++.|...+..+.|++|+++|+++|.+|. .|.||||+|+.+|
T Consensus 127 ~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~-~g~tpLh~A~~~~ 168 (434)
T PHA02874 127 FLHYAIKKGDLESIKMLFEYGADVNIEDD-NGCYPIHIAIKHN 168 (434)
T ss_pred HHHHHHHCCCHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHCC
Confidence 46777778888888888888888888887 8888888887654
No 38
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.26 E-value=1.1e-06 Score=64.32 Aligned_cols=41 Identities=17% Similarity=0.065 Sum_probs=34.2
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
.++.|+..+..+.++.|+..|+++|.+|. .|.||||+|++.
T Consensus 107 pLh~Aa~~~~~eivklLL~~GAdin~kd~-~G~TpL~~A~~~ 147 (300)
T PHA02884 107 PLYISVLHGCLKCLEILLSYGADINIQTN-DMVTPIELALMI 147 (300)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHh
Confidence 36777888888888888888888888888 888888888764
No 39
>PHA02798 ankyrin-like protein; Provisional
Probab=98.23 E-value=1.1e-06 Score=66.16 Aligned_cols=42 Identities=10% Similarity=-0.032 Sum_probs=37.5
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++.|+..+..+.+++|++.|||+|.+|. .|.||||+|+..|
T Consensus 261 PL~~A~~~~~~~~v~~LL~~GAdin~~d~-~G~TpL~~A~~~~ 302 (489)
T PHA02798 261 PLYYSVSHNNRKIFEYLLQLGGDINIITE-LGNTCLFTAFENE 302 (489)
T ss_pred HHHHHHHcCcHHHHHHHHHcCCcccccCC-CCCcHHHHHHHcC
Confidence 36778888999999999999999999999 9999999998754
No 40
>PHA02946 ankyin-like protein; Provisional
Probab=98.23 E-value=1.5e-06 Score=65.75 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=32.4
Q ss_pred hhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 37 ETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 37 e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.....+.|+.|+++|+++|.+|. +|.||||+|+.+|
T Consensus 48 ~~~~~~iv~~Ll~~Gadvn~~d~-~G~TpLh~Aa~~g 83 (446)
T PHA02946 48 KGLDERFVEELLHRGYSPNETDD-DGNYPLHIASKIN 83 (446)
T ss_pred cCCCHHHHHHHHHCcCCCCccCC-CCCCHHHHHHHcC
Confidence 44567889999999999999999 9999999999875
No 41
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.21 E-value=2.9e-06 Score=58.01 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=15.4
Q ss_pred cHHHHHHHHHcCCCCCCCCCCCCchHHHHhh
Q psy1719 40 MLEDLAAEAARGQDLEYKDPASGATPSVNGL 70 (73)
Q Consensus 40 ~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa 70 (73)
..+.+++|+++|+|+|.+|. +|.||||+|+
T Consensus 102 ~~eiv~~Ll~~gadin~~d~-~G~TpLh~a~ 131 (209)
T PHA02859 102 EPEILKILIDSGSSITEEDE-DGKNLLHMYM 131 (209)
T ss_pred cHHHHHHHHHCCCCCCCcCC-CCCCHHHHHH
Confidence 44555555555555555555 5555555543
No 42
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.20 E-value=1.6e-06 Score=57.30 Aligned_cols=42 Identities=14% Similarity=-0.020 Sum_probs=37.9
Q ss_pred HHHhCchhccHHHHHHHHH-cCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAA-RGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~-~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++.++..+..+.+++|+. .|++++.++. +|.||||+|+..|
T Consensus 97 pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~-~g~tpL~~A~~~~ 139 (166)
T PHA02743 97 LLHIAASTKNYELAEWLCRQLGVNLGAINY-QHETAYHIAYKMR 139 (166)
T ss_pred HHHHHHHhCCHHHHHHHHhccCCCccCcCC-CCCCHHHHHHHcC
Confidence 3788889999999999995 8999999999 9999999998754
No 43
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.19 E-value=1.6e-06 Score=68.57 Aligned_cols=40 Identities=18% Similarity=0.068 Sum_probs=20.9
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
++.|+..+..+.|++|+++|+|+|.+|. +|.||||+|+.+
T Consensus 119 Lh~Aa~~g~~eiv~~LL~~Gadvn~~d~-~G~TpLh~A~~~ 158 (664)
T PTZ00322 119 LHIACANGHVQVVRVLLEFGADPTLLDK-DGKTPLELAEEN 158 (664)
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHC
Confidence 4444555555555555555555555555 555555555543
No 44
>PHA02741 hypothetical protein; Provisional
Probab=98.17 E-value=2.6e-06 Score=56.18 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=38.4
Q ss_pred HHHhCchhccHHHHHHHHH-cCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAA-RGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~-~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++.|+..+..+.+++|++ .|+++|.+|. +|+||||+|+..|
T Consensus 101 pLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~-~g~tpL~~A~~~~ 143 (169)
T PHA02741 101 ALHLAAHRRDHDLAEWLCCQPGIDLHFCNA-DNKSPFELAIDNE 143 (169)
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCcCCC-CCCCHHHHHHHCC
Confidence 3788999999999999997 5999999999 9999999998764
No 45
>PHA02917 ankyrin-like protein; Provisional
Probab=98.16 E-value=1.9e-06 Score=68.45 Aligned_cols=35 Identities=11% Similarity=-0.097 Sum_probs=32.6
Q ss_pred hccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 38 TRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 38 ~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.+..+.|++|+++|+|+|.+|. +|.||||+|+++|
T Consensus 206 ~~~~eiv~~Li~~Gadvn~~d~-~G~TpLh~A~~~g 240 (661)
T PHA02917 206 YVRPEVVKCLINHGIKPSSIDK-NYCTALQYYIKSS 240 (661)
T ss_pred cCcHHHHHHHHHCCCCcccCCC-CCCcHHHHHHHcC
Confidence 4688999999999999999999 9999999999865
No 46
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.16 E-value=2.3e-06 Score=63.19 Aligned_cols=42 Identities=14% Similarity=-0.015 Sum_probs=38.7
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++.|+..+..+.+++|++.|+|+|.+|. .|.||||+|+..+
T Consensus 253 pL~~A~~~~~~~iv~~Ll~~gad~n~~d~-~g~tpl~~A~~~~ 294 (480)
T PHA03100 253 PLHYAVYNNNPEFVKYLLDLGANPNLVNK-YGDTPLHIAILNN 294 (480)
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHhC
Confidence 47888899999999999999999999999 9999999998754
No 47
>PHA02798 ankyrin-like protein; Provisional
Probab=98.13 E-value=2.4e-06 Score=64.35 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 39 RMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 39 ~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
+.++.++.|+++|+|+|.+|. .|.||||+|+.+
T Consensus 87 ~~~~iv~~Ll~~GadiN~~d~-~G~TpLh~a~~~ 119 (489)
T PHA02798 87 HMLDIVKILIENGADINKKNS-DGETPLYCLLSN 119 (489)
T ss_pred hHHHHHHHHHHCCCCCCCCCC-CcCcHHHHHHHc
Confidence 446777777777777777777 777777777654
No 48
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.13 E-value=3.8e-06 Score=68.17 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=34.4
Q ss_pred HHhCchhccH-----HHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 32 TRAAPETRML-----EDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 32 ~r~a~e~~~l-----~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
++.|+..+.. +.+++|++.|+|+|.+|. +|+||||+|+++|
T Consensus 501 Lh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~-~G~TPLh~A~~~g 546 (764)
T PHA02716 501 LHVSIISHTNANIVMDSFVYLLSIQYNINIPTK-NGVTPLMLTMRNN 546 (764)
T ss_pred HHHHHHcCCccchhHHHHHHHHhCCCCCcccCC-CCCCHHHHHHHcC
Confidence 5666666554 556999999999999999 9999999999865
No 49
>KOG0195|consensus
Probab=98.11 E-value=1.5e-06 Score=65.49 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=40.0
Q ss_pred HHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 30 DETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 30 ~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
..++.|+..|+-+.|+.|++..+|||+.+. +|.||||+|+.||
T Consensus 69 tplhlaaahghrdivqkll~~kadvnavne-hgntplhyacfwg 111 (448)
T KOG0195|consen 69 TPLHLAAAHGHRDIVQKLLSRKADVNAVNE-HGNTPLHYACFWG 111 (448)
T ss_pred cchhhhhhcccHHHHHHHHHHhcccchhhc-cCCCchhhhhhhc
Confidence 348899999999999999999999999999 9999999999986
No 50
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.09 E-value=3.3e-06 Score=66.80 Aligned_cols=42 Identities=17% Similarity=0.047 Sum_probs=39.4
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.+..++..|.+..|+.|+++|+|+|.+|. +|.||||+|+.+|
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~-~G~TpLh~Aa~~g 126 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTGGADPNCRDY-DGRTPLHIACANG 126 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCcHHHHHHHCC
Confidence 47788999999999999999999999999 9999999999875
No 51
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.09 E-value=3.9e-06 Score=62.02 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=30.7
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
++.|++.+.++.++.|+++|+++|.++. .|.||||+|+.+|
T Consensus 161 Lh~A~~~~~~~iv~~Ll~~g~~~n~~~~-~g~tpL~~A~~~g 201 (434)
T PHA02874 161 IHIAIKHNFFDIIKLLLEKGAYANVKDN-NGESPLHNAAEYG 201 (434)
T ss_pred HHHHHHCCcHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcC
Confidence 6667777777777777777777777777 7777777777654
No 52
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.08 E-value=4.9e-06 Score=62.73 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=28.7
Q ss_pred chhccHHHHHHHHHcCCCC-CCCCCCCCchHHHHhhh
Q psy1719 36 PETRMLEDLAAEAARGQDL-EYKDPASGATPSVNGLR 71 (73)
Q Consensus 36 ~e~~~l~~v~~ll~~Gadv-n~~d~~~G~TpLH~Aa~ 71 (73)
...+.++.|++|+++|||+ |.+|. .|.||||+|+.
T Consensus 119 ~~~~~~eiv~~Ll~~Gadin~~~d~-~g~tpLh~a~~ 154 (494)
T PHA02989 119 SNINNCDMLRFLLSKGINVNDVKNS-RGYNLLHMYLE 154 (494)
T ss_pred cccCcHHHHHHHHHCCCCcccccCC-CCCCHHHHHHH
Confidence 3446788899999999999 78888 89999998864
No 53
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=98.06 E-value=5.3e-06 Score=52.91 Aligned_cols=42 Identities=17% Similarity=0.026 Sum_probs=35.3
Q ss_pred HHHhCchhcc-----HHHHHHHHHcCC---CCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRM-----LEDLAAEAARGQ---DLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~-----l~~v~~ll~~Ga---dvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.+..+...+. .+.++.|++.|+ +.+.+|. +|.||||+|+..|
T Consensus 109 ~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~-~g~tpl~~A~~~~ 158 (235)
T COG0666 109 PLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE-DGNTPLHWAALNG 158 (235)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC-CCCchhHHHHHcC
Confidence 3677777777 999999999999 5556688 9999999999865
No 54
>KOG0818|consensus
Probab=98.05 E-value=5.9e-06 Score=65.27 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=41.4
Q ss_pred HHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 30 DETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 30 ~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++++.++.+.++..-.||..||++|..+++.|.||||+||..|
T Consensus 135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~G 178 (669)
T KOG0818|consen 135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAG 178 (669)
T ss_pred HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhcc
Confidence 45899999999999999999999999999999999999999876
No 55
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.03 E-value=6.5e-06 Score=48.27 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=33.2
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
++.|++.+.++.++.|++.|.+++. |.||||+|+.+|
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~ 37 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENG 37 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTT
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcC
Confidence 4568899999999999999999997 779999999876
No 56
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.00 E-value=9.9e-06 Score=65.82 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=29.5
Q ss_pred HhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhh
Q psy1719 33 RAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLR 71 (73)
Q Consensus 33 r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~ 71 (73)
..+++.+.++.|+.|+++|+++|.+|. .|+||||+|+.
T Consensus 289 i~AA~~g~leiVklLLe~GAdIN~kD~-~G~TPLH~Aaa 326 (764)
T PHA02716 289 ITLARNIDISVVYSFLQPGVKLHYKDS-AGRTCLHQYIL 326 (764)
T ss_pred HHHHHcCCHHHHHHHHhCCCceeccCC-CCCCHHHHHHH
Confidence 345677788888888888888888888 88888887653
No 57
>PHA02730 ankyrin-like protein; Provisional
Probab=97.98 E-value=1.7e-05 Score=63.77 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHHHcC--CCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 8 AEAALDHIEAEMAARG--VTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 8 de~~~~~ie~~m~~~G--i~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
...+.+.|...++.+. +-|..+-...+-.-....+.+++|+++|||+|.. . .|.||||+|+..
T Consensus 324 n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~-~G~TpLH~Aa~~ 388 (672)
T PHA02730 324 NHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-T-DNNYPLHDYFVN 388 (672)
T ss_pred chhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-C-CCCcHHHHHHHH
Confidence 3445555555554433 2333333333333346789999999999999985 6 899999998865
No 58
>PHA02859 ankyrin repeat protein; Provisional
Probab=97.97 E-value=7.1e-06 Score=56.08 Aligned_cols=30 Identities=10% Similarity=-0.065 Sum_probs=17.8
Q ss_pred ccHHHHHHHHHcCCCCCCCCCCCCchHHHHh
Q psy1719 39 RMLEDLAAEAARGQDLEYKDPASGATPSVNG 69 (73)
Q Consensus 39 ~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~A 69 (73)
+.++.+++|++.|+|+|.+|. .|.||||.+
T Consensus 136 ~~~~iv~~Li~~gadin~~d~-~g~t~Lh~~ 165 (209)
T PHA02859 136 VRINVIKLLIDSGVSFLNKDF-DNNNILYSY 165 (209)
T ss_pred CCHHHHHHHHHcCCCcccccC-CCCcHHHHH
Confidence 455666666666666666665 666666643
No 59
>PHA02876 ankyrin repeat protein; Provisional
Probab=97.93 E-value=1.2e-05 Score=62.70 Aligned_cols=56 Identities=11% Similarity=-0.009 Sum_probs=45.9
Q ss_pred HHHHHcCCCHHhH-----HHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 17 AEMAARGVTQALI-----DETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 17 ~~m~~~Gi~~~~~-----~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
+.+-+.|.+.... ..++-|++.|.++.|++|+++|+++|..+. .|.||||+|+..|
T Consensus 162 k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~-~g~t~L~~A~~~~ 222 (682)
T PHA02876 162 EMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIAL-DDLSVLECAVDSK 222 (682)
T ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCC-CCCCHHHHHHHcC
Confidence 3445566653322 258999999999999999999999999999 9999999998764
No 60
>KOG0510|consensus
Probab=97.90 E-value=8.3e-06 Score=66.94 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=39.9
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++-++.+|..+.|..|++.|+++|.++. ++.||||.||+||
T Consensus 276 pLH~a~r~G~~~svd~Ll~~Ga~I~~kn~-d~~spLH~AA~yg 317 (929)
T KOG0510|consen 276 PLHYAARQGGPESVDNLLGFGASINSKNK-DEESPLHFAAIYG 317 (929)
T ss_pred hHHHHHHcCChhHHHHHHHcCCcccccCC-CCCCchHHHHHcc
Confidence 47889999999999999999999999998 9999999999986
No 61
>KOG0783|consensus
Probab=97.89 E-value=1e-05 Score=67.13 Aligned_cols=59 Identities=19% Similarity=0.077 Sum_probs=47.7
Q ss_pred HHHHHHHcCCCHHhHHH------HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 15 IEAEMAARGVTQALIDE------TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 15 ie~~m~~~Gi~~~~~~~------~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
|..+..+.+.....+.+ ++.++.++.-..+++||++|+||+.+|.++|+||||-|.+||
T Consensus 33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG 97 (1267)
T KOG0783|consen 33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYG 97 (1267)
T ss_pred HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhc
Confidence 45555555544444443 577788899999999999999999999999999999999987
No 62
>KOG0508|consensus
Probab=97.87 E-value=9.9e-06 Score=63.77 Aligned_cols=40 Identities=25% Similarity=0.079 Sum_probs=19.8
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
+|.|.-.|.++.||+|+++|+|++..|. .|.|-||+|++.
T Consensus 121 LraACfDG~leivKyLvE~gad~~Ianr-hGhTcLmIa~yk 160 (615)
T KOG0508|consen 121 LRAACFDGHLEIVKYLVEHGADPEIANR-HGHTCLMIACYK 160 (615)
T ss_pred HHHHHhcchhHHHHHHHHcCCCCccccc-CCCeeEEeeecc
Confidence 4445555555555555544544444444 444444444443
No 63
>KOG0514|consensus
Probab=97.85 E-value=1.7e-05 Score=60.88 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
+-.|...|..+.||.||..|||||.+|. +|.|+|+.|+.+|
T Consensus 344 LMLAVSHGr~d~vk~LLacgAdVNiQDd-DGSTALMCA~EHG 384 (452)
T KOG0514|consen 344 LMLAVSHGRVDMVKALLACGADVNIQDD-DGSTALMCAAEHG 384 (452)
T ss_pred hhhhhhcCcHHHHHHHHHccCCCccccC-CccHHHhhhhhhC
Confidence 5567788999999999999999999999 9999999999876
No 64
>KOG4177|consensus
Probab=97.81 E-value=1.9e-05 Score=66.53 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=39.7
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++.|+.+|.-+.+.+|+++||++|+.|. +|.||||+|+++|
T Consensus 576 PLH~Aa~~G~~~i~~LLlk~GA~vna~d~-~g~TpL~iA~~lg 617 (1143)
T KOG4177|consen 576 PLHQAAQQGHNDIAELLLKHGASVNAADL-DGFTPLHIAVRLG 617 (1143)
T ss_pred hhhHHHHcChHHHHHHHHHcCCCCCcccc-cCcchhHHHHHhc
Confidence 38999999999999999999999999999 9999999999875
No 65
>KOG0510|consensus
Probab=97.79 E-value=3.5e-05 Score=63.39 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=46.5
Q ss_pred HHHHHcCCCHHhHHH-----HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 17 AEMAARGVTQALIDE-----TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 17 ~~m~~~Gi~~~~~~~-----~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
+...+.|.+...... ++-|+..+..+.++.|++.|+|+|..|. .|.||||.||.+|
T Consensus 105 ~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de-~~~TpLh~A~~~~ 165 (929)
T KOG0510|consen 105 QVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDE-NGFTPLHLAARKN 165 (929)
T ss_pred HHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCcccccc-CCCchhhHHHhcC
Confidence 345566666544444 6788899999999999999999999999 9999999999875
No 66
>KOG1710|consensus
Probab=97.75 E-value=5.8e-05 Score=56.82 Aligned_cols=43 Identities=16% Similarity=-0.024 Sum_probs=37.5
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
-+-.|+-+|.++-|++||+.|+|||......|-||||+||-.|
T Consensus 48 ~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG 90 (396)
T KOG1710|consen 48 VLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG 90 (396)
T ss_pred HHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence 3677889999999999999999999764449999999999765
No 67
>KOG0508|consensus
Probab=97.74 E-value=1e-05 Score=63.65 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=45.7
Q ss_pred HHHHHcCCCHHhHHH-----HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 17 AEMAARGVTQALIDE-----TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 17 ~~m~~~Gi~~~~~~~-----~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++-+.|.+++-.+. +.-++.+|..+.+++|++.|||+|.++. .|.|+||.++..|
T Consensus 134 KyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~-kGNTALH~caEsG 194 (615)
T KOG0508|consen 134 KYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSY-KGNTALHDCAESG 194 (615)
T ss_pred HHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcc-cCchHHHhhhhcc
Confidence 344477877543333 5678889999999999999999999999 9999999999765
No 68
>PHA02792 ankyrin-like protein; Provisional
Probab=97.70 E-value=5.1e-05 Score=60.77 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=20.3
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhh
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGL 70 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa 70 (73)
++-|+..+..+.+++|+++|+++|.+|. .|.||||+|+
T Consensus 414 Lh~Aa~~~n~eivelLLs~GADIN~kD~-~G~TpL~~A~ 451 (631)
T PHA02792 414 LYYCIESHSVSLVEWLIDNGADINITTK-YGSTCIGICV 451 (631)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHH
Confidence 4444455555555555555555555555 5555555554
No 69
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=97.69 E-value=5.9e-05 Score=48.04 Aligned_cols=43 Identities=21% Similarity=0.087 Sum_probs=37.3
Q ss_pred HHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 30 DETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 30 ~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
..+..+...+....+++++..|+++|.++. .|.||||+|+.+|
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~t~l~~a~~~~ 117 (235)
T COG0666 75 LPLHSAASKGDDKIVKLLLASGADVNAKDA-DGDTPLHLAALNG 117 (235)
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCcccccC-CCCcHHHHHHhcC
Confidence 445666667888888999999999999999 9999999999875
No 70
>KOG0512|consensus
Probab=97.61 E-value=4e-05 Score=54.26 Aligned_cols=41 Identities=15% Similarity=0.003 Sum_probs=37.8
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
.+++|..-...+++-.||++|+|||+... .-+||||+|+-+
T Consensus 133 PLhSAckWnN~~va~~LLqhgaDVnA~t~-g~ltpLhlaa~~ 173 (228)
T KOG0512|consen 133 PLHSACKWNNFEVAGRLLQHGADVNAQTK-GLLTPLHLAAGN 173 (228)
T ss_pred chhhhhcccchhHHHHHHhccCccccccc-ccchhhHHhhcc
Confidence 48999999999999999999999999988 889999999854
No 71
>KOG4214|consensus
Probab=97.59 E-value=7e-05 Score=48.49 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=37.2
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++-|+.+|-++.+.+|++.||+||.+|. .|-|||.-|.+.|
T Consensus 37 plhyAAD~GQl~ilefli~iGA~i~~kDK-ygITPLLsAvwEG 78 (117)
T KOG4214|consen 37 PLHYAADYGQLSILEFLISIGANIQDKDK-YGITPLLSAVWEG 78 (117)
T ss_pred cchHhhhcchHHHHHHHHHhccccCCccc-cCCcHHHHHHHHh
Confidence 36778899999999999999999999999 9999998887654
No 72
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.58 E-value=3.3e-05 Score=60.98 Aligned_cols=41 Identities=17% Similarity=-0.095 Sum_probs=36.8
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
.+..++..+..+.+++|+++|+|+|.+|. .|+||||+|+..
T Consensus 178 pL~~Aa~~~~~~iv~lLl~~gadin~~d~-~g~T~Lh~A~~~ 218 (743)
T TIGR00870 178 PLNAAACLGSPSIVALLSEDPADILTADS-LGNTLLHLLVME 218 (743)
T ss_pred HHHHHHHhCCHHHHHHHhcCCcchhhHhh-hhhHHHHHHHhh
Confidence 35567788899999999999999999999 999999999875
No 73
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.55 E-value=0.00013 Score=42.85 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=25.7
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
+..+...+..+.++.|++.|+++|..+. .|.||+|+|+.+
T Consensus 44 l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~l~~a~~~ 83 (126)
T cd00204 44 LHLAAKNGHLEIVKLLLEKGADVNARDK-DGNTPLHLAARN 83 (126)
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHc
Confidence 4445555666666666666666666665 666777766654
No 74
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.51 E-value=0.00011 Score=58.05 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=37.8
Q ss_pred HHHHHhCchhccHHHHHHHHHc--CCCCCCCCCCCCchHHH-Hhhhc
Q psy1719 29 IDETRAAPETRMLEDLAAEAAR--GQDLEYKDPASGATPSV-NGLRY 72 (73)
Q Consensus 29 ~~~~r~a~e~~~l~~v~~ll~~--Gadvn~~d~~~G~TpLH-~Aa~~ 72 (73)
...+..|+++|.++.|+.+++. |.++|..|. .|.|||| .|+.+
T Consensus 18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~-~G~t~Lh~~A~~~ 63 (743)
T TIGR00870 18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDR-LGRSALFVAAIEN 63 (743)
T ss_pred HHHHHHHHHcCCHHHHHHHhccccccCCCCcCc-cchhHHHHHHHhc
Confidence 4668899999999999999999 999999999 9999999 66554
No 75
>PHA02792 ankyrin-like protein; Provisional
Probab=97.49 E-value=0.00017 Score=57.88 Aligned_cols=30 Identities=13% Similarity=-0.020 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 42 EDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 42 ~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
.-++.|+++|||+|.+|. .|+||||+|+..
T Consensus 391 ~IlklLIs~GADIN~kD~-~G~TPLh~Aa~~ 420 (631)
T PHA02792 391 SILKLCKPYIDDINKIDK-HGRSILYYCIES 420 (631)
T ss_pred HHHHHHHhcCCccccccc-cCcchHHHHHHc
Confidence 345566666666666666 666666666654
No 76
>PF13606 Ank_3: Ankyrin repeat
Probab=97.49 E-value=5.3e-05 Score=38.03 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=11.7
Q ss_pred CCchHHHHhhhcC
Q psy1719 61 SGATPSVNGLRYK 73 (73)
Q Consensus 61 ~G~TpLH~Aa~~~ 73 (73)
+|+||||+|+++|
T Consensus 1 ~G~T~Lh~A~~~g 13 (30)
T PF13606_consen 1 NGNTPLHLAASNG 13 (30)
T ss_pred CCCCHHHHHHHhC
Confidence 5999999999876
No 77
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=97.45 E-value=6.5e-05 Score=37.71 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=11.6
Q ss_pred CCchHHHHhhhcC
Q psy1719 61 SGATPSVNGLRYK 73 (73)
Q Consensus 61 ~G~TpLH~Aa~~~ 73 (73)
+|.||||+|+.+|
T Consensus 1 dG~TpLh~A~~~~ 13 (33)
T PF00023_consen 1 DGNTPLHYAAQRG 13 (33)
T ss_dssp TSBBHHHHHHHTT
T ss_pred CcccHHHHHHHHH
Confidence 5999999999875
No 78
>KOG0195|consensus
Probab=97.42 E-value=0.00013 Score=55.23 Aligned_cols=42 Identities=12% Similarity=0.026 Sum_probs=39.3
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++.++..|....|+.|+++|+-||+.+. -..||||+||..|
T Consensus 37 plhwaakegh~aivemll~rgarvn~tnm-gddtplhlaaahg 78 (448)
T KOG0195|consen 37 PLHWAAKEGHVAIVEMLLSRGARVNSTNM-GDDTPLHLAAAHG 78 (448)
T ss_pred hhhhhhhcccHHHHHHHHhcccccccccC-CCCcchhhhhhcc
Confidence 48999999999999999999999999998 8899999999876
No 79
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=97.40 E-value=0.0002 Score=35.86 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDP 59 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~ 59 (73)
.++.|+..+..+.+++|+++|+++|.+|.
T Consensus 5 pLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 5 PLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 47888999999999999999999999874
No 80
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.37 E-value=0.00032 Score=41.14 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=37.6
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.+..+.+.+..+.++.|++.|.+++.++. .|.||||.|+..+
T Consensus 10 ~l~~a~~~~~~~~i~~li~~~~~~~~~~~-~g~~~l~~a~~~~ 51 (126)
T cd00204 10 PLHLAASNGHLEVVKLLLENGADVNAKDN-DGRTPLHLAAKNG 51 (126)
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcC
Confidence 46677888999999999999999999999 9999999998754
No 81
>PF13606 Ank_3: Ankyrin repeat
Probab=97.33 E-value=0.0002 Score=35.86 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=23.7
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEY 56 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~ 56 (73)
.++.|++.|..+.|++||++|+|||.
T Consensus 5 ~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 5 PLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 47788999999999999999999984
No 82
>KOG0502|consensus
Probab=96.99 E-value=0.00059 Score=49.90 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=36.5
Q ss_pred HHHHcCCCHHhHHHHH-----hCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 18 EMAARGVTQALIDETR-----AAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 18 ~m~~~Gi~~~~~~~~r-----~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
++-+.|-++..+.--| -|...|..+.|++|+.++.|||.-|- +|-|||-+|++-|
T Consensus 178 fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDw-NGgTpLlyAvrgn 237 (296)
T KOG0502|consen 178 FLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDW-NGGTPLLYAVRGN 237 (296)
T ss_pred HHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceecc-CCCceeeeeecCC
Confidence 3445566655444333 34456677777778888888888888 8888888887654
No 83
>KOG0522|consensus
Probab=96.90 E-value=0.0011 Score=52.63 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=39.5
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++.|+..|....++.|+.+|||+-.++. +||||||-|+.+|
T Consensus 58 pLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~-~gWs~L~EAv~~g 99 (560)
T KOG0522|consen 58 PLHLAVRLGHVEAARILLSAGADVSIKNN-EGWSPLHEAVSTG 99 (560)
T ss_pred cHHHHHHhcCHHHHHHHHhcCCCcccccc-ccccHHHHHHHcC
Confidence 48899999999999999999999999999 9999999998775
No 84
>KOG0502|consensus
Probab=96.77 E-value=0.00096 Score=48.82 Aligned_cols=48 Identities=13% Similarity=-0.060 Sum_probs=42.4
Q ss_pred HHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 20 AARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 20 ~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.+.|.| .+-.|+.+|.+..|++|+++|||++.... ...|+|..|++.|
T Consensus 157 De~GfT-----pLiWAaa~G~i~vV~fLL~~GAdp~~lgk-~resALsLAt~gg 204 (296)
T KOG0502|consen 157 DEFGFT-----PLIWAAAKGHIPVVQFLLNSGADPDALGK-YRESALSLATRGG 204 (296)
T ss_pred cccCch-----HhHHHHhcCchHHHHHHHHcCCChhhhhh-hhhhhHhHHhcCC
Confidence 456777 48899999999999999999999999988 8899999999865
No 85
>KOG0506|consensus
Probab=96.73 E-value=0.0009 Score=52.99 Aligned_cols=44 Identities=25% Similarity=0.111 Sum_probs=37.0
Q ss_pred HHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 29 IDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 29 ~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
+-.+--++..|.+..++.+.-.|.|++.+|. +.+|+||+||..|
T Consensus 507 ~i~~~~aa~~GD~~alrRf~l~g~D~~~~Dy-D~RTaLHvAAaEG 550 (622)
T KOG0506|consen 507 VINVMYAAKNGDLSALRRFALQGMDLETKDY-DDRTALHVAAAEG 550 (622)
T ss_pred hhhhhhhhhcCCHHHHHHHHHhccccccccc-ccchhheeecccC
Confidence 3445667888999999999999999999999 9999999998765
No 86
>KOG0511|consensus
Probab=96.53 E-value=0.0031 Score=49.04 Aligned_cols=44 Identities=11% Similarity=0.030 Sum_probs=41.3
Q ss_pred HHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 29 IDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 29 ~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
..++-.+.+.|.++.|+.|++-|++||+.|. -...||.+|+-+|
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~-fD~spL~lAsLcG 80 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDR-FDSSPLYLASLCG 80 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhc-ccccHHHHHHHcC
Confidence 6788899999999999999999999999999 9999999999876
No 87
>KOG4214|consensus
Probab=96.39 E-value=0.0079 Score=39.02 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=45.8
Q ss_pred ccccccchhHHHHHHHHHH---------HcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHH
Q psy1719 2 PYDICEAEAALDHIEAEMA---------ARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSV 67 (73)
Q Consensus 2 p~Diaede~~~~~ie~~m~---------~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH 67 (73)
|+-+|-|=.-+.+|+=.+. +-|||| +.+|.-.|+.+.||+|++.|||-..+.+ +|.|.+-
T Consensus 37 plhyAAD~GQl~ilefli~iGA~i~~kDKygITP-----LLsAvwEGH~~cVklLL~~GAdrt~~~P-dG~~~~e 105 (117)
T KOG4214|consen 37 PLHYAADYGQLSILEFLISIGANIQDKDKYGITP-----LLSAVWEGHRDCVKLLLQNGADRTIHAP-DGTALIE 105 (117)
T ss_pred cchHhhhcchHHHHHHHHHhccccCCccccCCcH-----HHHHHHHhhHHHHHHHHHcCcccceeCC-CchhHHh
Confidence 4455555555555554443 467774 8899999999999999999999999999 9988764
No 88
>KOG3676|consensus
Probab=96.32 E-value=0.0035 Score=51.50 Aligned_cols=32 Identities=25% Similarity=0.121 Sum_probs=28.5
Q ss_pred hccHHHHHHHHHcCCCCCCCCCCCCchHHHHhh
Q psy1719 38 TRMLEDLAAEAARGQDLEYKDPASGATPSVNGL 70 (73)
Q Consensus 38 ~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa 70 (73)
.+-.+.+++|+++|||+|++|. .|.|-||+-.
T Consensus 250 ~nq~eivrlLl~~gAd~~aqDS-~GNTVLH~lV 281 (782)
T KOG3676|consen 250 TNQPEIVRLLLAHGADPNAQDS-NGNTVLHMLV 281 (782)
T ss_pred cCCHHHHHHHHhcCCCCCcccc-CCChHHHHHH
Confidence 4567889999999999999999 9999999743
No 89
>KOG0514|consensus
Probab=96.05 E-value=0.0053 Score=47.42 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=44.8
Q ss_pred HHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 18 EMAARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 18 ~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
++.+.|+|+--+..+-........+.|..|.+.| |||++-...|+|+|++|..+|
T Consensus 297 ~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHG 351 (452)
T KOG0514|consen 297 QQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHG 351 (452)
T ss_pred ccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcC
Confidence 5677888887777777777788888888888888 899887778999999988765
No 90
>KOG0520|consensus
Probab=96.02 E-value=0.0025 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.8
Q ss_pred HHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 48 AARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 48 l~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.-.|..||.+|. .||||||||+.+|
T Consensus 628 ~~~~~ai~i~D~-~G~tpL~wAa~~G 652 (975)
T KOG0520|consen 628 SADGVAIDIRDR-NGWTPLHWAAFRG 652 (975)
T ss_pred eecccccccccC-CCCcccchHhhcC
Confidence 466999999999 9999999999886
No 91
>KOG0521|consensus
Probab=95.78 E-value=0.0055 Score=50.30 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=38.2
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
-++.+...+..-.+.+|+++|+++|.+|. .|.||||.+...|
T Consensus 659 ~lh~a~~~~~~~~~e~ll~~ga~vn~~d~-~g~~plh~~~~~g 700 (785)
T KOG0521|consen 659 LLHVAVGTGDSGAVELLLQNGADVNALDS-KGRTPLHHATASG 700 (785)
T ss_pred hhhhhhccchHHHHHHHHhcCCcchhhhc-cCCCcchhhhhhc
Confidence 37888999999999999999999999999 9999999988754
No 92
>KOG0818|consensus
Probab=95.41 E-value=0.016 Score=46.32 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=38.5
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++-|+..|....+++|+-.|||++++|. +|.||+-+|-..|
T Consensus 170 pLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~-~GmtP~~~AR~~g 211 (669)
T KOG0818|consen 170 PLHVAAKAGQILQAELLAVYGADPGAQDS-SGMTPVDYARQGG 211 (669)
T ss_pred hhHHHHhccchhhhhHHhhccCCCCCCCC-CCCcHHHHHHhcC
Confidence 37889999999999999999999999999 9999999997654
No 93
>KOG0507|consensus
Probab=95.24 E-value=0.01 Score=48.97 Aligned_cols=41 Identities=17% Similarity=0.028 Sum_probs=31.5
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
++.++..+.++.|.+|+++|+|.=.+++ ++.|+|-+|+++|
T Consensus 119 lhlaaqhgh~dvv~~Ll~~~adp~i~nn-s~~t~ldlA~qfg 159 (854)
T KOG0507|consen 119 LHLAAQHGHLEVVFYLLKKNADPFIRNN-SKETVLDLASRFG 159 (854)
T ss_pred cchhhhhcchHHHHHHHhcCCCccccCc-ccccHHHHHHHhh
Confidence 5777777777777777777777777777 7777777777765
No 94
>KOG0507|consensus
Probab=93.94 E-value=0.053 Score=44.98 Aligned_cols=47 Identities=15% Similarity=0.030 Sum_probs=41.6
Q ss_pred HcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 21 ARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 21 ~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.+|+.+ ++-++-.|+++-||.++.++..+|..+- .|-||||.|++.|
T Consensus 80 ~kg~~p-----lhlaaw~g~~e~vkmll~q~d~~na~~~-e~~tplhlaaqhg 126 (854)
T KOG0507|consen 80 TKGILP-----LHLAAWNGNLEIVKMLLLQTDILNAVNI-ENETPLHLAAQHG 126 (854)
T ss_pred ccCcce-----EEehhhcCcchHHHHHHhcccCCCcccc-cCcCccchhhhhc
Confidence 456664 6788999999999999999999999999 9999999999864
No 95
>KOG0705|consensus
Probab=93.55 E-value=0.072 Score=43.34 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=36.4
Q ss_pred HHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 30 DETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 30 ~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
..++-|++.|.+.-.++|+=.|+|+-.+|. +|.|+|.+|-+.|
T Consensus 663 t~LHLa~~~gnVvl~QLLiWyg~dv~~rda-~g~t~l~yar~a~ 705 (749)
T KOG0705|consen 663 TALHLAARKGNVVLAQLLIWYGVDVMARDA-HGRTALFYARQAG 705 (749)
T ss_pred chhhhhhhhcchhHHHHHHHhCccceeccc-CCchhhhhHhhcc
Confidence 357888899999888999999999999999 9999999887643
No 96
>KOG0705|consensus
Probab=93.32 E-value=0.085 Score=42.94 Aligned_cols=43 Identities=19% Similarity=0.067 Sum_probs=34.1
Q ss_pred HHHHhCchhccHHHHHHHHHcCCCCC----CCCCCCCchHHHHhhhcC
Q psy1719 30 DETRAAPETRMLEDLAAEAARGQDLE----YKDPASGATPSVNGLRYK 73 (73)
Q Consensus 30 ~~~r~a~e~~~l~~v~~ll~~Gadvn----~~d~~~G~TpLH~Aa~~~ 73 (73)
.++.+|.....+..+-+||.+|-..+ ..+. +|.||||+|++.|
T Consensus 626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~-~grt~LHLa~~~g 672 (749)
T KOG0705|consen 626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEG-DGRTALHLAARKG 672 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhccccCC-CCcchhhhhhhhc
Confidence 45777888888899999999986543 2366 8899999999864
No 97
>KOG0506|consensus
Probab=92.39 E-value=0.075 Score=42.44 Aligned_cols=44 Identities=20% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHHHhCchhccHHHHHHHHHc-CCCCCCCCCCCCchHHHHhhhcC
Q psy1719 29 IDETRAAPETRMLEDLAAEAAR-GQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 29 ~~~~r~a~e~~~l~~v~~ll~~-Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
-..++-|+..|..+.+|+|++. ++|.+.+|. -|.|||--|-++|
T Consensus 540 RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR-w~rtPlDdA~~F~ 584 (622)
T KOG0506|consen 540 RTALHVAAAEGHVEVVKFLLNACKVDPDPKDR-WGRTPLDDAKHFK 584 (622)
T ss_pred chhheeecccCceeHHHHHHHHHcCCCChhhc-cCCCcchHhHhcC
Confidence 4568999999999999999976 999999999 9999999988775
No 98
>KOG4369|consensus
Probab=90.29 E-value=0.23 Score=43.61 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=35.3
Q ss_pred HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
|-.+..-|.-+.|.+|+.+|++++.+|+ .|.|||.+|+--
T Consensus 761 LT~acaggh~e~vellv~rganiehrdk-kgf~plImaata 800 (2131)
T KOG4369|consen 761 LTSACAGGHREEVELLVVRGANIEHRDK-KGFVPLIMAATA 800 (2131)
T ss_pred ccccccCccHHHHHHHHHhccccccccc-ccchhhhhhccc
Confidence 5667788899999999999999999999 999999998753
No 99
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=88.36 E-value=0.64 Score=19.59 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=19.5
Q ss_pred HHhCchhccHHHHHHHHHcCCCCC
Q psy1719 32 TRAAPETRMLEDLAAEAARGQDLE 55 (73)
Q Consensus 32 ~r~a~e~~~l~~v~~ll~~Gadvn 55 (73)
+..+.+.+..+.++.|+++|.+++
T Consensus 6 l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 6 LHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC
Confidence 444566789999999999999876
No 100
>KOG0522|consensus
Probab=87.85 E-value=0.34 Score=38.79 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=21.6
Q ss_pred HHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 47 EAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 47 ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
+.+.+..|+.+|. .|.||||.|+..|
T Consensus 41 ~~~~~~~id~~D~-~g~TpLhlAV~Lg 66 (560)
T KOG0522|consen 41 LAKVSLVIDRRDP-PGRTPLHLAVRLG 66 (560)
T ss_pred hhhhhceeccccC-CCCccHHHHHHhc
Confidence 3346778999999 9999999998754
No 101
>KOG2384|consensus
Probab=87.38 E-value=0.68 Score=33.23 Aligned_cols=39 Identities=15% Similarity=0.003 Sum_probs=29.2
Q ss_pred HhCchhccHHHHHHHHHcC-CCCCCCCCCCCchHHHHhhhc
Q psy1719 33 RAAPETRMLEDLAAEAARG-QDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 33 r~a~e~~~l~~v~~ll~~G-advn~~d~~~G~TpLH~Aa~~ 72 (73)
--++..|.-+.|++|+.+| +.|.+.|. +|.+++-+|-..
T Consensus 17 mcaa~eg~~eavsyllgrg~a~vgv~d~-ssldaaqlaek~ 56 (223)
T KOG2384|consen 17 MCAAMEGSNEAVSYLLGRGVAFVGVTDE-SSLDAAQLAEKG 56 (223)
T ss_pred HHHhhhcchhHHHHHhccCccccccccc-ccchHHHHHHhc
Confidence 3455667778888888888 88888888 888888777543
No 102
>KOG1710|consensus
Probab=87.22 E-value=0.6 Score=35.60 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=37.0
Q ss_pred HHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 30 DETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 30 ~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.++..+-.++..+....||+.--.+|.+|+ +|-|||.-||+.|
T Consensus 14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~-sGMs~LahAaykG 56 (396)
T KOG1710|consen 14 SPLLEAIDKNDTEAALALLSTVRQVNQRDP-SGMSVLAHAAYKG 56 (396)
T ss_pred hHHHHHHccCcHHHHHHHHHHhhhhhccCC-CcccHHHHHHhcC
Confidence 446677778889999999998777999999 9999999998865
No 103
>KOG0783|consensus
Probab=86.52 E-value=0.74 Score=39.35 Aligned_cols=62 Identities=18% Similarity=0.152 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHHHcCCCHHhHH------HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhh
Q psy1719 8 AEAALDHIEAEMAARGVTQALID------ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLR 71 (73)
Q Consensus 8 de~~~~~ie~~m~~~Gi~~~~~~------~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~ 71 (73)
.+.--.++++-+++ ||+...-+ .++++--.|.++.+-+||++|+.+..+|. +|..||..-++
T Consensus 61 S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dk-eglsplq~~~r 128 (1267)
T KOG0783|consen 61 SENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDK-EGLSPLQFLSR 128 (1267)
T ss_pred ccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecc-cCCCHHHHHhh
Confidence 34444566666665 87743222 38999999999999999999999999999 99999976554
No 104
>KOG0782|consensus
Probab=85.79 E-value=0.46 Score=39.16 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=32.7
Q ss_pred hHHHHHhCchhccHHHHHHHHHcCCC--CCCCCCCCCchHHHHhhh
Q psy1719 28 LIDETRAAPETRMLEDLAAEAARGQD--LEYKDPASGATPSVNGLR 71 (73)
Q Consensus 28 ~~~~~r~a~e~~~l~~v~~ll~~Gad--vn~~d~~~G~TpLH~Aa~ 71 (73)
...-++-++..|.-+.||++|.+|-. ++..|. +|.|+||-||.
T Consensus 899 ~~sllh~a~~tg~~eivkyildh~p~elld~~de-~get~lhkaa~ 943 (1004)
T KOG0782|consen 899 HCSLLHYAAKTGNGEIVKYILDHGPSELLDMADE-TGETALHKAAC 943 (1004)
T ss_pred hhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhh-hhhHHHHHHHH
Confidence 44557778888888888888888864 566677 88888888774
No 105
>KOG0515|consensus
Probab=83.42 E-value=1.5 Score=35.85 Aligned_cols=48 Identities=15% Similarity=-0.032 Sum_probs=40.9
Q ss_pred CCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 24 VTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 24 i~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
|--.-+.-|..++-.|-++.|+..+..=-|+...+. .|-||||.|..-
T Consensus 546 vrfnPLaLLLDaaLeGEldlVq~~i~ev~DpSqpNd-EGITaLHNAiCa 593 (752)
T KOG0515|consen 546 VRFNPLALLLDAALEGELDLVQRIIYEVTDPSQPND-EGITALHNAICA 593 (752)
T ss_pred eecchHHHHHhhhhcchHHHHHHHHHhhcCCCCCCc-cchhHHhhhhhc
Confidence 333336668889999999999999999999999999 999999999754
No 106
>KOG2505|consensus
Probab=82.56 E-value=0.8 Score=36.80 Aligned_cols=40 Identities=20% Similarity=0.054 Sum_probs=36.0
Q ss_pred HHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhh
Q psy1719 30 DETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGL 70 (73)
Q Consensus 30 ~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa 70 (73)
.-|+-|+.+|+-..|+.||+.|.|.-.+|. .|.||-.+++
T Consensus 432 T~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~-~Grtpy~ls~ 471 (591)
T KOG2505|consen 432 TFLHYAAAQGARKCVKYFLEEGCDPSTKDG-AGRTPYSLSA 471 (591)
T ss_pred hHHHHHHhcchHHHHHHHHHhcCCchhccc-CCCCcccccc
Confidence 347889999999999999999999999999 9999987765
No 107
>KOG3676|consensus
Probab=76.89 E-value=2.2 Score=35.56 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=39.9
Q ss_pred cchhHHHHHHHHHHHcCCCHHhHHH-----HHhCchhccHHHHHHHHHcCCC--CCCCCCCCCchHHHHhhhcC
Q psy1719 7 EAEAALDHIEAEMAARGVTQALIDE-----TRAAPETRMLEDLAAEAARGQD--LEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 7 ede~~~~~ie~~m~~~Gi~~~~~~~-----~r~a~e~~~l~~v~~ll~~Gad--vn~~d~~~G~TpLH~Aa~~~ 73 (73)
-.+++.++|-. +|-++..-|. ++.-.-.--.+=-..+++.|++ ...++. +|-|||-.||..|
T Consensus 251 nq~eivrlLl~----~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~-qgLTPLtLAaklG 319 (782)
T KOG3676|consen 251 NQPEIVRLLLA----HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNN-QGLTPLTLAAKLG 319 (782)
T ss_pred CCHHHHHHHHh----cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcccccccc-CCCChHHHHHHhh
Confidence 35566666655 5555322222 3333333333445678999999 889999 9999999999754
No 108
>KOG0521|consensus
Probab=76.50 E-value=2.3 Score=35.34 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=41.8
Q ss_pred HHHHHcCCCHHhHHH-----HHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhh
Q psy1719 17 AEMAARGVTQALIDE-----TRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLR 71 (73)
Q Consensus 17 ~~m~~~Gi~~~~~~~-----~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~ 71 (73)
..+-..|-+.+..+. ++.+...|.+.-+.+|+++||+.+.-++ +|.+||++|..
T Consensus 673 e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~-~~~~~l~~a~~ 731 (785)
T KOG0521|consen 673 ELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDP-DGKLPLDIAME 731 (785)
T ss_pred HHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCc-cCcchhhHHhh
Confidence 344445544333333 5677889999999999999999999999 99999999954
No 109
>KOG4369|consensus
Probab=73.83 E-value=6.2 Score=35.36 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=42.9
Q ss_pred HHHHHHHcCCCHHhHHHH---HhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 15 IEAEMAARGVTQALIDET---RAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 15 ie~~m~~~Gi~~~~~~~~---r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
|..+..+.|-+...+.+- ...+.+.+.+.+.++++.|+.+|.+..++.+|+|-.|++.|
T Consensus 259 ~~~~~~~a~a~ln~~~~e~~a~~~aa~~h~~~~~~~~~k~~~~~~k~~~~d~ta~s~~~~~g 320 (2131)
T KOG4369|consen 259 IVEEVIRAGADLNFEQDERTALMKAAKDHFEVVQLLLSKGASVNFKSSKNDATALSLACSEG 320 (2131)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHHh
Confidence 344555666554444332 22334588999999999999999998889999999998765
No 110
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=73.82 E-value=3.8 Score=23.37 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcC-CCHHhHHHHHhCchhccHHHHHHHHHcCC
Q psy1719 11 ALDHIEAEMAARG-VTQALIDETRAAPETRMLEDLAAEAARGQ 52 (73)
Q Consensus 11 ~~~~ie~~m~~~G-i~~~~~~~~r~a~e~~~l~~v~~ll~~Ga 52 (73)
|+.-|.++|+++| ++..++..-........-.-+..|++.|.
T Consensus 1 ~L~~i~~~l~~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~ 43 (69)
T PF09012_consen 1 MLQEIRDYLRERGRVSLAELAREFGISPEAVEAMLEQLIRKGY 43 (69)
T ss_dssp -CHHHHHHHHHS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTS
T ss_pred CHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 3556888898888 78777777777777777777888888884
No 111
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=70.97 E-value=11 Score=22.74 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=25.9
Q ss_pred cccccchhHHHHHHHHHHHcCCCHHhHHHHHhCch
Q psy1719 3 YDICEAEAALDHIEAEMAARGVTQALIDETRAAPE 37 (73)
Q Consensus 3 ~Diaede~~~~~ie~~m~~~Gi~~~~~~~~r~a~e 37 (73)
||++|.-...+. ...+++.|++...|+.+.....
T Consensus 3 y~v~d~v~~~~w-k~~~R~LGlse~~Id~ie~~~~ 36 (80)
T cd08313 3 YTVLDEVPPRRW-KEFVRRLGLSDNEIERVELDHR 36 (80)
T ss_pred HHHHHhCCHHHH-HHHHHHcCCCHHHHHHHHHhCC
Confidence 777866555555 4599999999999999866554
No 112
>PF14493 HTH_40: Helix-turn-helix domain
Probab=68.00 E-value=13 Score=22.14 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=34.2
Q ss_pred HHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCC
Q psy1719 18 EMAARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYK 57 (73)
Q Consensus 18 ~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~ 57 (73)
+|=++|.+.++|...|...+..-..-+-.++..|-+++..
T Consensus 8 ~l~~~G~si~eIA~~R~L~~sTI~~HL~~~~~~g~~~~~~ 47 (91)
T PF14493_consen 8 ELFQKGLSIEEIAKIRGLKESTIYGHLAELIESGEPLDIE 47 (91)
T ss_pred HHHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCHH
Confidence 4556899999999999999999999999999999877743
No 113
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=64.12 E-value=13 Score=29.73 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=34.6
Q ss_pred HcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 21 ARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 21 ~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
++.|+.+.++.+...++...+..-..-+.+|.-+| .. .|+-+||+|.|.
T Consensus 53 k~~i~~~~~~~l~~la~~~~l~~~~~~~~~G~~iN--~t-E~R~vlH~alR~ 101 (548)
T PRK00179 53 KNRITDETLALLLDLAREAGLEGARDAMFAGEKIN--TT-EDRAVLHTALRN 101 (548)
T ss_pred CCCCCHHHHHHHHHHHHhCChHHHHHHHhCCCCCC--CC-CCcchhhHHhhC
Confidence 46788888888766666554444444445699999 44 778999999874
No 114
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=63.00 E-value=6.3 Score=25.67 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCCHHhHHHHHhCchhcc
Q psy1719 12 LDHIEAEMAARGVTQALIDETRAAPETRM 40 (73)
Q Consensus 12 ~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~ 40 (73)
++-=..+++++|++.++|+++...+...-
T Consensus 23 ~~~k~~FL~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 23 LEKKIAFLESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence 33445788999999999999877766554
No 115
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=61.80 E-value=20 Score=20.59 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHcCCCHHhHHHHHhCch----hccHHHHHHHHHcC
Q psy1719 9 EAALDHIEAEMAARGVTQALIDETRAAPE----TRMLEDLAAEAARG 51 (73)
Q Consensus 9 e~~~~~ie~~m~~~Gi~~~~~~~~r~a~e----~~~l~~v~~ll~~G 51 (73)
..++++|..++.++|+.|. +.++-.+-. ..--.-++.|-+.|
T Consensus 9 ~~vL~~I~~~~~~~G~~Pt-~rEIa~~~g~~S~~tv~~~L~~Le~kG 54 (65)
T PF01726_consen 9 KEVLEFIREYIEENGYPPT-VREIAEALGLKSTSTVQRHLKALERKG 54 (65)
T ss_dssp HHHHHHHHHHHHHHSS----HHHHHHHHTSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHhCCCChHHHHHHHHHHHHCc
Confidence 4789999999999999863 333322222 22333445565666
No 116
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=61.52 E-value=4.8 Score=23.83 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.8
Q ss_pred hhccHHHHHHHHHcCCCCCCCCCCCCc
Q psy1719 37 ETRMLEDLAAEAARGQDLEYKDPASGA 63 (73)
Q Consensus 37 e~~~l~~v~~ll~~Gadvn~~d~~~G~ 63 (73)
..--|++++.|+..|.++-+.|.++|.
T Consensus 18 ~YiTL~di~~lV~~g~~~~V~D~ktge 44 (64)
T PF07879_consen 18 SYITLEDIAQLVREGEDFKVVDAKTGE 44 (64)
T ss_pred eeEeHHHHHHHHHCCCeEEEEECCCCc
Confidence 345689999999999999999987774
No 117
>PLN02649 glucose-6-phosphate isomerase
Probab=58.50 E-value=18 Score=29.07 Aligned_cols=49 Identities=14% Similarity=0.046 Sum_probs=34.1
Q ss_pred HcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 21 ARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 21 ~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
++.||.+.++.+...++...|..-..-+..|.-+|. . .++-.||+|.|.
T Consensus 55 k~~v~~~~l~~l~~la~~~~l~~~~~~m~~G~~iN~--t-E~R~vlH~aLR~ 103 (560)
T PLN02649 55 RQRVTDETMELLFPLAEAANLFEKIEAMFSGEIINS--T-EDRAVLHVALRA 103 (560)
T ss_pred CCcCCHHHHHHHHHHHHhCChHHHHHHHhCCCCCCC--C-CCcchhhHHhhC
Confidence 467888888886665555444444444489999994 4 677999999873
No 118
>PRK14136 recX recombination regulator RecX; Provisional
Probab=58.19 E-value=19 Score=27.17 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHc
Q psy1719 13 DHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAAR 50 (73)
Q Consensus 13 ~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~ 50 (73)
..|..++.++||+.+.|++....-+...++.+..|+.+
T Consensus 229 ~rIrqELrQKGId~eLIEqALeeieEDE~E~A~~L~eK 266 (309)
T PRK14136 229 ARIVSELKRHAVGDALVESVGAQLRETEFERAQAVWRK 266 (309)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhccHhHHHHHHHHHHH
Confidence 46889999999999999887664344455666666544
No 119
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=58.07 E-value=20 Score=21.40 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=24.1
Q ss_pred CccccccchhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCC
Q psy1719 1 MPYDICEAEAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQ 52 (73)
Q Consensus 1 mp~Diaede~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Ga 52 (73)
+|||-=..+....+|+.++-+.|-+-...+. .-..-.+.|+.-|++|-
T Consensus 3 IP~~~L~~eTL~nLIeefv~ReGTdyG~~E~----sL~~kv~qv~~qL~~G~ 50 (70)
T PF06794_consen 3 IPYQQLPPETLNNLIEEFVLREGTDYGEQEL----SLEEKVEQVKQQLKSGE 50 (70)
T ss_dssp --GGGS-HHHHHHHHHHHHH----------------HHHHHHHHHHHHHTTS
T ss_pred CChHHCCHHHHHHHHHHHHHccCcccCcccc----cHHHHHHHHHHHHHcCC
Confidence 5888777888889999999999987332221 12223445777777774
No 120
>PF14076 DUF4258: Domain of unknown function (DUF4258)
Probab=57.79 E-value=14 Score=20.42 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=12.3
Q ss_pred HHHHHHHcCCCHHhHHHH
Q psy1719 15 IEAEMAARGVTQALIDET 32 (73)
Q Consensus 15 ie~~m~~~Gi~~~~~~~~ 32 (73)
-..+|.++||+...+..+
T Consensus 6 a~~rm~eR~Is~~~I~~~ 23 (73)
T PF14076_consen 6 ARERMQERGISEEDIEDA 23 (73)
T ss_pred HHHHHHhCCCCHHHHHHH
Confidence 356899999996544443
No 121
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=57.22 E-value=22 Score=21.46 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=36.2
Q ss_pred CccccccchhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHH
Q psy1719 1 MPYDICEAEAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLA 45 (73)
Q Consensus 1 mp~Diaede~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~ 45 (73)
.|.|+..-...+..+...+++.|+++.....+.-+...-....++
T Consensus 1 ~pa~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~lav~E~~~Nav~ 45 (125)
T PF13581_consen 1 FPADPEDIREARAFLREFLERLGLPEEDRDDLELAVSEALTNAVE 45 (125)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 367777777899999999999999998888888877766555553
No 122
>PTZ00430 glucose-6-phosphate isomerase; Provisional
Probab=57.02 E-value=17 Score=29.26 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=33.3
Q ss_pred HcCCCHHhHHHHHhCchhccH-HHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 21 ARGVTQALIDETRAAPETRML-EDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 21 ~~Gi~~~~~~~~r~a~e~~~l-~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
++.|+.+.++.+...++...| +.++.+ .+|..|| .. .|+-.||+|.|.
T Consensus 50 k~~v~~~~~~~l~~la~~~~l~~~~~~m-~~G~~iN--~t-E~R~vlH~alR~ 98 (552)
T PTZ00430 50 RQRLDEETLKLLIELAEEAKLKEKIKDM-FNGEKIN--TT-ENRAVLHTALRA 98 (552)
T ss_pred CCCCCHHHHHHHHHHHHhCChHHHHHHH-HCCCcCC--CC-CCcccccHhhcC
Confidence 467888788877666655444 444444 4699999 44 678899999773
No 123
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=55.68 E-value=16 Score=20.45 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=13.0
Q ss_pred HHHHHHc-CCCHHhHHHHHh
Q psy1719 16 EAEMAAR-GVTQALIDETRA 34 (73)
Q Consensus 16 e~~m~~~-Gi~~~~~~~~r~ 34 (73)
++++.+. |+|++.++.+|.
T Consensus 46 e~Yl~~~lgl~~~~i~~Lr~ 65 (68)
T PF13348_consen 46 ENYLREELGLSEEDIERLRE 65 (68)
T ss_dssp HHHHHHT-T--HHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 4567566 999999998875
No 124
>KOG2505|consensus
Probab=55.07 E-value=13 Score=30.13 Aligned_cols=31 Identities=10% Similarity=-0.097 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCCCCCC------CCCCCchHHHHhhhcC
Q psy1719 42 EDLAAEAARGQDLEYK------DPASGATPSVNGLRYK 73 (73)
Q Consensus 42 ~~v~~ll~~Gadvn~~------d~~~G~TpLH~Aa~~~ 73 (73)
.-+..|.+++++.|.+ +. .-.|+||+|+..|
T Consensus 405 ~~ie~lken~lsgnf~~~pe~~~~-ltsT~LH~aa~qg 441 (591)
T KOG2505|consen 405 DSIEALKENLLSGNFDVTPEANDY-LTSTFLHYAAAQG 441 (591)
T ss_pred hHHHHHHhcCCccccccccccccc-ccchHHHHHHhcc
Confidence 3467788889888643 33 3569999999764
No 125
>KOG0782|consensus
Probab=54.66 E-value=16 Score=30.55 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=35.0
Q ss_pred HHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhh
Q psy1719 31 ETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGL 70 (73)
Q Consensus 31 ~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa 70 (73)
.++.++-++.-....+|+..||.+-..|. .|.||-.-|-
T Consensus 937 ~lhkaa~~~~r~vc~~lvdagasl~ktd~-kg~tp~eraq 975 (1004)
T KOG0782|consen 937 ALHKAACQRNRAVCQLLVDAGASLRKTDS-KGKTPQERAQ 975 (1004)
T ss_pred HHHHHHHhcchHHHHHHHhcchhheeccc-CCCChHHHHH
Confidence 47888899999999999999999999999 9999976554
No 126
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=54.50 E-value=29 Score=21.47 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCHHhHHHHHh
Q psy1719 12 LDHIEAEMAARGVTQALIDETRA 34 (73)
Q Consensus 12 ~~~ie~~m~~~Gi~~~~~~~~r~ 34 (73)
...|.+.+.++||+.+.++++..
T Consensus 45 ~~~I~~~L~~kGi~~~~i~~~l~ 67 (121)
T PF02631_consen 45 PRRIRQKLKQKGIDREIIEEALE 67 (121)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHT
T ss_pred HHHHHHHHHHHCCChHHHHHHHH
Confidence 35688888999999888888766
No 127
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=53.20 E-value=25 Score=28.18 Aligned_cols=51 Identities=8% Similarity=0.040 Sum_probs=34.9
Q ss_pred HcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCC---CCCCCchHHHHhhhc
Q psy1719 21 ARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYK---DPASGATPSVNGLRY 72 (73)
Q Consensus 21 ~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~---d~~~G~TpLH~Aa~~ 72 (73)
++-|+.+.++.+...++...+..-..-+..|.-||.. .. .++-.||+|.|.
T Consensus 53 k~~~~~~~~~~l~~la~~~~l~~~~~~m~~G~~iN~~~~~~t-E~R~vlH~alR~ 106 (533)
T PRK14095 53 TERVDDRILAALQNLADEAELIEKMKAMQNGAVINRIEGFPS-ENRPVLHTATRG 106 (533)
T ss_pred CCcCCHHHHHHHHHHHHHCCcHHHHHHHhCcccccCCCCCCC-CCcchhhHHhhC
Confidence 4667777777776666655555555555799999922 33 577899999773
No 128
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=51.98 E-value=14 Score=21.53 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=16.4
Q ss_pred cchhHHHHHHHHHHHcCCC
Q psy1719 7 EAEAALDHIEAEMAARGVT 25 (73)
Q Consensus 7 ede~~~~~ie~~m~~~Gi~ 25 (73)
++++.+.++++.|++.||.
T Consensus 28 ~~~e~~~rf~~~L~~~Gv~ 46 (69)
T PF09269_consen 28 DDEESLRRFQRKLKKMGVE 46 (69)
T ss_dssp -TGGGHHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHCCHH
Confidence 4678889999999999998
No 129
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=51.40 E-value=24 Score=23.42 Aligned_cols=29 Identities=34% Similarity=0.546 Sum_probs=19.9
Q ss_pred cc-chhHHHHHHHHHHHcC-CCHHhHHHHHhC
Q psy1719 6 CE-AEAALDHIEAEMAARG-VTQALIDETRAA 35 (73)
Q Consensus 6 ae-de~~~~~ie~~m~~~G-i~~~~~~~~r~a 35 (73)
|+ +++.+.+| +.|.++| ||.+...+||.-
T Consensus 74 C~T~EEALEVI-nylek~GEIt~e~A~eLr~~ 104 (128)
T PF09868_consen 74 CKTDEEALEVI-NYLEKRGEITPEEAKELRSI 104 (128)
T ss_pred hCcHHHHHHHH-HHHHHhCCCCHHHHHHHHHH
Confidence 53 55666655 5777888 888777777754
No 130
>KOG2536|consensus
Probab=51.20 E-value=36 Score=25.17 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHHHcCCCHHhHHHHHhCch
Q psy1719 8 AEAALDHIEAEMAARGVTQALIDETRAAPE 37 (73)
Q Consensus 8 de~~~~~ie~~m~~~Gi~~~~~~~~r~a~e 37 (73)
||.+.+..+++++.|||.+....=+..--.
T Consensus 214 De~Lqd~fh~fLEeRGI~esl~~FL~~ym~ 243 (263)
T KOG2536|consen 214 DEELQDSFHRFLEERGIKESLASFLHAYMK 243 (263)
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 789999999999999999665555544333
No 131
>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q.; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.
Probab=51.02 E-value=37 Score=23.09 Aligned_cols=27 Identities=19% Similarity=0.243 Sum_probs=21.2
Q ss_pred chhHHHHHHHHHHHcCCCHHhHHHHHh
Q psy1719 8 AEAALDHIEAEMAARGVTQALIDETRA 34 (73)
Q Consensus 8 de~~~~~ie~~m~~~Gi~~~~~~~~r~ 34 (73)
|+.+-+.+.++++.|||+.....-+..
T Consensus 157 De~Lq~~~~~yLeeRGId~~la~fl~~ 183 (204)
T PF02330_consen 157 DENLQDAFMNYLEERGIDEELANFLHD 183 (204)
T ss_dssp BHHHHHHHHHHHHHTT-SHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 788899999999999999776665543
No 132
>PF08970 Sda: Sporulation inhibitor A; InterPro: IPR015064 Members of this protein group contain two antiparallel alpha helices that are linked by a highly structured inter-helix loop to form a helical hairpin; the structure is stabilised by numerous hydrophobic and electrostatic interactions. These sporulation inhibitors are antikinases that bind to the histidine kinase KinA phosphotransfer domain and act as a molecular barricade that inhibit productive interaction between the ATP binding site and the phosphorylatable KinA His residue. This results in the inhibition of sporulation (by preventing phosphorylation of spo0A) []. ; PDB: 3FYR_B 1PV0_A.
Probab=50.58 E-value=20 Score=19.84 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=15.0
Q ss_pred cchhHHHHHHHHHHHcCCCH
Q psy1719 7 EAEAALDHIEAEMAARGVTQ 26 (73)
Q Consensus 7 ede~~~~~ie~~m~~~Gi~~ 26 (73)
-+++-..+|+++|++||+..
T Consensus 21 L~~dFI~Ll~~Ei~rR~L~~ 40 (46)
T PF08970_consen 21 LDPDFIRLLEEEIQRRSLKH 40 (46)
T ss_dssp --HHHHHHHHHHHHHCT-TT
T ss_pred CCHHHHHHHHHHHHHcCCcc
Confidence 36778899999999999873
No 133
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=49.70 E-value=20 Score=20.80 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=15.9
Q ss_pred cchhHHHHHHHHHHHcCCC
Q psy1719 7 EAEAALDHIEAEMAARGVT 25 (73)
Q Consensus 7 ede~~~~~ie~~m~~~Gi~ 25 (73)
++++.+.++++.|++.||.
T Consensus 28 ~~~e~~~~f~~~L~~~Gv~ 46 (69)
T TIGR03595 28 NNDENLRRFARKLKKLGVE 46 (69)
T ss_pred CCHHHHHHHHHHHHHCCHH
Confidence 3567778899999999998
No 134
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=49.63 E-value=10 Score=24.55 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.0
Q ss_pred hhccHHHHHHHHHcCCCCCCCCCCCCc
Q psy1719 37 ETRMLEDLAAEAARGQDLEYKDPASGA 63 (73)
Q Consensus 37 e~~~l~~v~~ll~~Gadvn~~d~~~G~ 63 (73)
..--|++++.|+..|.++-+.|.++|.
T Consensus 18 ~YITLedi~~lV~~g~~f~V~DakTge 44 (107)
T TIGR01848 18 SYVTLEDIRDLVREGREFQVVDSKSGD 44 (107)
T ss_pred ceeeHHHHHHHHHCCCeEEEEECCCCc
Confidence 345689999999999999999987774
No 135
>cd07923 Gallate_dioxygenase_C The C-terminal domain of Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of the PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. This model represents the C-terminal domain, which is similar to the A subunit of PCA 4,5-dioxygenase (or LigAB). The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. Since enzymes in this subfamily have fused A and B subunits, the dimer interface may resemble the tetramer interface of classical LigAB enzymes. This enzyme belongs to the class III extradiol dioxygenase family, composed of enzymes whi
Probab=47.88 E-value=37 Score=21.35 Aligned_cols=33 Identities=21% Similarity=0.099 Sum_probs=24.5
Q ss_pred HHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCC
Q psy1719 16 EAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQDLE 55 (73)
Q Consensus 16 e~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn 55 (73)
+..|.+-|+|+++.+..+.. |+..|+..|+++=
T Consensus 29 ea~~~e~gLt~Ee~~av~~r-------D~~~li~~G~n~y 61 (94)
T cd07923 29 EALFDEAGLTEEERTLIRNR-------DWIGMIRYGVIFF 61 (94)
T ss_pred HHHHHHcCCCHHHHHHHHcc-------hHHHHHHccCcHH
Confidence 46789999998777776654 5667778887764
No 136
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=47.83 E-value=18 Score=28.41 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=34.2
Q ss_pred HcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 21 ARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 21 ~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
++.|+.+.++.+...++...+..-..-+-+|..||. . .++-.||+|.|.
T Consensus 4 k~~~~~~~~~~l~~la~~~~l~~~~~~~~~g~~iN~--t-E~r~vlH~alr~ 52 (486)
T PF00342_consen 4 KQRIDEETLDLLIELAEEAGLPEKIEAMFSGEKINI--T-ENRAVLHTALRA 52 (486)
T ss_dssp TSS--HHHHHHHHHHHHHTTHHHHHHHHHTTHHHBT--T-TTB--HHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcChHHHHHHHhCcchhhc--c-ccHhHHHHHHHc
Confidence 567788888888777777667666677788989996 3 567899999874
No 137
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=47.78 E-value=31 Score=22.20 Aligned_cols=47 Identities=19% Similarity=0.127 Sum_probs=30.6
Q ss_pred HHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCC----CCCCCchHHHHhh
Q psy1719 16 EAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYK----DPASGATPSVNGL 70 (73)
Q Consensus 16 e~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~----d~~~G~TpLH~Aa 70 (73)
+..|.+.|+|+++.+.+++. |+..|+..|+++-.. -. .|.+.+|+.+
T Consensus 37 eAy~~~~gLTeEe~~AV~~r-------D~~~Li~lGgn~y~l~K~~~~-~g~~~~~~~a 87 (106)
T cd07921 37 EAYCDKFGLTEEQKQAVLDR-------DWLRLLELGGNIYYLLKLAAI-DGKSMQDIGA 87 (106)
T ss_pred HHHHHHcCCCHHHHHHHHhC-------CHHHHHHhcCcHHHHHHHHHH-hCCcHHHHHH
Confidence 46789999997777776654 455677777776432 22 4555666554
No 138
>PF00742 Homoserine_dh: Homoserine dehydrogenase; InterPro: IPR001342 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the catalytic domain of homoserine dehydrogenase.; GO: 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2EJW_E 3ING_A 3JSA_A 3C8M_A 1TVE_A 1EBU_D 1EBF_B 1Q7G_A 3DO5_A 3MTJ_A.
Probab=45.90 E-value=15 Score=25.07 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHcCCCHHhHHHHHhCchhcc
Q psy1719 10 AALDHIEAEMAARGVTQALIDETRAAPETRM 40 (73)
Q Consensus 10 ~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~ 40 (73)
.|.+||-++|.+.|.+- -+.++.|.+.|.
T Consensus 24 GT~NyIL~~m~~~g~~f--~~al~eAq~lGy 52 (179)
T PF00742_consen 24 GTTNYILTRMEEEGLSF--SEALKEAQELGY 52 (179)
T ss_dssp HHHHHHHHHHHTHT--H--HHHHHHHHHTTS
T ss_pred CHHHHHHHHHhcCCCCH--HHHHHHHHHcCC
Confidence 68999999999999983 233555555554
No 139
>PRK04966 hypothetical protein; Provisional
Probab=45.71 E-value=26 Score=21.03 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=32.0
Q ss_pred CccccccchhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCC
Q psy1719 1 MPYDICEAEAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQ 52 (73)
Q Consensus 1 mp~Diaede~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Ga 52 (73)
+||+-=..+....+|+.++-+.|-+-...+. .-..-.+.|+.-|++|-
T Consensus 3 IP~~~L~~eTL~nLIeefv~ReGTdyG~~E~----sl~~kv~qv~~qL~~G~ 50 (72)
T PRK04966 3 IPWQDLAPETLENLIESFVLREGTDYGEHER----SLEQKVADVKRQLQSGE 50 (72)
T ss_pred CChHhCCHHHHHHHHHHHHhccCccCCcccc----cHHHHHHHHHHHHHcCC
Confidence 5888667888889999999999987322221 11223445666677773
No 140
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=44.38 E-value=60 Score=21.57 Aligned_cols=39 Identities=26% Similarity=0.225 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCC
Q psy1719 8 AEAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQDLE 55 (73)
Q Consensus 8 de~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn 55 (73)
|+....=|.+-|++++|+ .+++|..=-+ +.+-++|++.|
T Consensus 83 D~~ak~EI~~IM~~~~v~---FDeARliy~~------~~f~~NgI~pd 121 (128)
T PF09435_consen 83 DDAAKREIRRIMKRRRVN---FDEARLIYTE------RRFKKNGIGPD 121 (128)
T ss_pred CHHHHHHHHHHHHHcCCC---HHHHHHHHHH------HHHHHcCCCCC
Confidence 566778889999999999 7888764333 35667777666
No 141
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=42.80 E-value=27 Score=21.86 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=17.2
Q ss_pred ccchhHHHHHHHHHHHcCCC
Q psy1719 6 CEAEAALDHIEAEMAARGVT 25 (73)
Q Consensus 6 aede~~~~~ie~~m~~~Gi~ 25 (73)
|.++++++-|++++++.|+-
T Consensus 78 a~~~e~l~~I~~~L~~~G~L 97 (98)
T PF02829_consen 78 APDEEDLDKIEEALKKKGFL 97 (98)
T ss_dssp ESSHHHHHHHHHHHHHTT-B
T ss_pred ECCHHHHHHHHHHHHHCCCc
Confidence 57899999999999999974
No 142
>PF05396 Phage_T7_Capsid: Phage T7 capsid assembly protein; InterPro: IPR008768 This family contains the capsid assembly protein (scaffolding protein) of bacteriophage T7.; GO: 0019069 viral capsid assembly
Probab=41.77 E-value=74 Score=21.05 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHc
Q psy1719 10 AALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAAR 50 (73)
Q Consensus 10 ~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~ 50 (73)
+--.-|.++++.. +++.++.+-.+-+.+++..||.+++.
T Consensus 47 e~f~~i~~~~~~~--~~~~~ea~~~Ai~~~dla~vk~~vn~ 85 (123)
T PF05396_consen 47 EGFAAIMSHAEAN--SPAAAEAFNEAIESGDLATVKAAVNL 85 (123)
T ss_pred HHHHHHHHHHHhC--CHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3345577777555 99999999999999999999999864
No 143
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=41.44 E-value=30 Score=18.24 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=34.8
Q ss_pred HHHHHHHHHcC-CCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCC
Q psy1719 13 DHIEAEMAARG-VTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDP 59 (73)
Q Consensus 13 ~~ie~~m~~~G-i~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~ 59 (73)
.+|.--+...+ ++..++.+.....+..--.+++.|-+.|+.|.....
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L~~~~~~I~~~~~ 51 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGVSRRTIRRDIKELREWGIPIESKRG 51 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHHHHTT-EEEEETT
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEeeCC
Confidence 44555446666 999999999999999999999999888877765544
No 144
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=41.02 E-value=28 Score=20.96 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=34.1
Q ss_pred hhHHHHHHH-HHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCC
Q psy1719 9 EAALDHIEA-EMAARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYKD 58 (73)
Q Consensus 9 e~~~~~ie~-~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d 58 (73)
..++++|.. .-.+.||....|-+-....+......+..|+..|.--...|
T Consensus 50 ~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 100 (102)
T PF08784_consen 50 DKVLNFIKQQPNSEEGVHVDEIAQQLGMSENEVRKALDFLSNEGHIYSTID 100 (102)
T ss_dssp HHHHHHHHC----TTTEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEESSS
T ss_pred HHHHHHHHhcCCCCCcccHHHHHHHhCcCHHHHHHHHHHHHhCCeEecccC
Confidence 467778887 66678999777776667777777788888988886544444
No 145
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=41.00 E-value=31 Score=23.17 Aligned_cols=47 Identities=6% Similarity=0.042 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcC-CCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCC
Q psy1719 11 ALDHIEAEMAARG-VTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDP 59 (73)
Q Consensus 11 ~~~~ie~~m~~~G-i~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~ 59 (73)
.+.-+-.++.++| +.. ..=+|.......+..++..+..|.+++....
T Consensus 25 iv~~~i~~l~~~g~~~~--eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~ 72 (190)
T cd04400 25 VVYRCIEYLDKNRAIYE--EGIFRLSGSASVIKQLKERFNTEYDVDLFSS 72 (190)
T ss_pred HHHHHHHHHHHcCCcCC--CCeeeCCCcHHHHHHHHHHHcCCCCCCcccc
Confidence 3334445555555 442 2235777778888888889999988886543
No 146
>PRK00304 hypothetical protein; Provisional
Probab=40.96 E-value=29 Score=21.07 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=32.9
Q ss_pred CccccccchhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCC
Q psy1719 1 MPYDICEAEAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQ 52 (73)
Q Consensus 1 mp~Diaede~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Ga 52 (73)
+||+-=..+....+|+.++-+.|-+-.. ...-..-.+.|+.-|++|-
T Consensus 3 IP~~~L~~eTL~nLIeefv~ReGTDyg~-----E~sL~~kv~qv~~qL~~G~ 49 (75)
T PRK00304 3 IPYDQLEADTLTRLIEDFVTRDGTDNGD-----ETPLETRVLRVRQALTKGQ 49 (75)
T ss_pred CChHhCCHHHHHHHHHHHHhccCccCcc-----cccHHHHHHHHHHHHHcCC
Confidence 5888878888899999999999987322 1122233455777777774
No 147
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=40.71 E-value=18 Score=28.21 Aligned_cols=29 Identities=21% Similarity=0.063 Sum_probs=21.1
Q ss_pred ccHHHHHHHH--HcCCCCCCCCCCCCchHHHHhhh
Q psy1719 39 RMLEDLAAEA--ARGQDLEYKDPASGATPSVNGLR 71 (73)
Q Consensus 39 ~~l~~v~~ll--~~Gadvn~~d~~~G~TpLH~Aa~ 71 (73)
.|.+-++.+. -+|.-||-.+. ||||+|-+
T Consensus 381 ~M~~Yt~~~A~iF~G~RiDNCHS----TPlhVaey 411 (423)
T PF14701_consen 381 HMKEYTELMAKIFHGFRIDNCHS----TPLHVAEY 411 (423)
T ss_pred HHHHHHHHHHHhcCeeeeecCCC----CcHHHHHH
Confidence 3555555553 57999988888 99999854
No 148
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=40.33 E-value=77 Score=20.40 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCCHHhHHHHHhC
Q psy1719 12 LDHIEAEMAARGVTQALIDETRAA 35 (73)
Q Consensus 12 ~~~ie~~m~~~Gi~~~~~~~~r~a 35 (73)
...|...+.++||+.+.+++....
T Consensus 78 ~~~I~~~L~~kGi~~~~I~~~l~~ 101 (157)
T PRK00117 78 PRRIRQELRQKGVDREIIEEALAE 101 (157)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456888899999999888886554
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=39.81 E-value=22 Score=16.37 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=9.7
Q ss_pred HHHHHHHHHcCCCH
Q psy1719 13 DHIEAEMAARGVTQ 26 (73)
Q Consensus 13 ~~ie~~m~~~Gi~~ 26 (73)
.-+-++|.++||.|
T Consensus 21 ~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 21 LQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHhCCCC
Confidence 44556788899864
No 150
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.26 E-value=1.1e+02 Score=20.31 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=40.0
Q ss_pred cchhHHHHHHHHHHHcC-CCHHhHHHHHhCchhccHHHHHHHHHcCCCC
Q psy1719 7 EAEAALDHIEAEMAARG-VTQALIDETRAAPETRMLEDLAAEAARGQDL 54 (73)
Q Consensus 7 ede~~~~~ie~~m~~~G-i~~~~~~~~r~a~e~~~l~~v~~ll~~Gadv 54 (73)
+-++...-|....+++| +|..++...-.+.....-..++.|+..|.=.
T Consensus 9 er~eLk~rIvElVRe~GRiTi~ql~~~TGasR~Tvk~~lreLVa~G~l~ 57 (127)
T PF06163_consen 9 EREELKARIVELVREHGRITIKQLVAKTGASRNTVKRYLRELVARGDLY 57 (127)
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCCeE
Confidence 34677788899999999 9988888888999888888899999988433
No 151
>PHA02591 hypothetical protein; Provisional
Probab=39.26 E-value=64 Score=19.95 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHcCCCHHhHHHHHhCch
Q psy1719 9 EAALDHIEAEMAARGVTQALIDETRAAPE 37 (73)
Q Consensus 9 e~~~~~ie~~m~~~Gi~~~~~~~~r~a~e 37 (73)
+.-+--+-.+|.++|.|+..|..+.....
T Consensus 45 ~dd~~~vA~eL~eqGlSqeqIA~~LGVsq 73 (83)
T PHA02591 45 EDDLISVTHELARKGFTVEKIASLLGVSV 73 (83)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHhCCCH
Confidence 33345577899999999988888776554
No 152
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=38.35 E-value=45 Score=17.33 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=14.9
Q ss_pred HHHHHHHcCCCHHhHHHHHhC
Q psy1719 15 IEAEMAARGVTQALIDETRAA 35 (73)
Q Consensus 15 ie~~m~~~Gi~~~~~~~~r~a 35 (73)
|...+.++|+++.++...-..
T Consensus 1 ik~~r~~~gls~~~la~~~gi 21 (55)
T PF01381_consen 1 IKELRKEKGLSQKELAEKLGI 21 (55)
T ss_dssp HHHHHHHTTS-HHHHHHHHTS
T ss_pred CHHHHHHcCCCHHHHHHHhCC
Confidence 567888999998777665553
No 153
>PF13309 HTH_22: HTH domain
Probab=38.15 E-value=77 Score=17.92 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCC
Q psy1719 9 EAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQ 52 (73)
Q Consensus 9 e~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Ga 52 (73)
|.+.++|+..+.+.|.++ ..-.....++.|+.|-+.|+
T Consensus 1 e~i~~~i~~~~~~~~~~~------~~l~~~~k~~iV~~L~~~G~ 38 (64)
T PF13309_consen 1 ELIESIIEEVIAEVGKPP------SRLSKEEKKEIVRQLYEKGI 38 (64)
T ss_pred ChHHHHHHHHHHHhCCCh------hhCCHHHHHHHHHHHHHCCC
Confidence 346788999999999884 33344555777888888884
No 154
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=37.90 E-value=87 Score=19.46 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=17.8
Q ss_pred HHHHHHHcCCCHHhHHHHHhCch
Q psy1719 15 IEAEMAARGVTQALIDETRAAPE 37 (73)
Q Consensus 15 ie~~m~~~Gi~~~~~~~~r~a~e 37 (73)
..+++++.|+++..|+++-.-..
T Consensus 23 wK~faR~lglse~~Id~I~~~~~ 45 (97)
T cd08316 23 VKKFVRKSGLSEPKIDEIKLDNP 45 (97)
T ss_pred HHHHHHHcCCCHHHHHHHHHcCC
Confidence 45588999999999998865544
No 155
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=36.92 E-value=41 Score=18.08 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=12.2
Q ss_pred HHHHHHHcCCCHHhHHHHHh
Q psy1719 15 IEAEMAARGVTQALIDETRA 34 (73)
Q Consensus 15 ie~~m~~~Gi~~~~~~~~r~ 34 (73)
|...|+++|+++..+...-.
T Consensus 2 L~~~m~~~~it~~~La~~~g 21 (63)
T PF13443_consen 2 LKELMAERGITQKDLARKTG 21 (63)
T ss_dssp HHHHHHHTT--HHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHC
Confidence 56789999999766655433
No 156
>PHA03373 tegument protein; Provisional
Probab=36.62 E-value=78 Score=23.19 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=25.9
Q ss_pred ccchhHHHHHHHHHHHcCCCHHhHHHHHhCch
Q psy1719 6 CEAEAALDHIEAEMAARGVTQALIDETRAAPE 37 (73)
Q Consensus 6 aede~~~~~ie~~m~~~Gi~~~~~~~~r~a~e 37 (73)
.|-.++..|++.....-||++.++.++.+-.|
T Consensus 32 ve~~eL~~flee~f~~lGit~~Di~~~~rDtE 63 (247)
T PHA03373 32 VELAELEAFLEENFKDFGITQADIRSLSRDTE 63 (247)
T ss_pred hhHHHHHHHHHHhHHhcCcCHHHHHHHhhhhH
Confidence 34567888999999999999999998866554
No 157
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=36.57 E-value=26 Score=20.97 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=15.1
Q ss_pred HHHHcCCCHHhHHHHHhCch
Q psy1719 18 EMAARGVTQALIDETRAAPE 37 (73)
Q Consensus 18 ~m~~~Gi~~~~~~~~r~a~e 37 (73)
=|+++|++.+++..++.+-.
T Consensus 22 GLrR~Gfs~~~i~~l~~ayr 41 (83)
T PF13720_consen 22 GLRRRGFSKEEISALRRAYR 41 (83)
T ss_dssp HHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHH
Confidence 37899999999988877643
No 158
>PF07052 Hep_59: Hepatocellular carcinoma-associated antigen 59; InterPro: IPR010756 This family represents a conserved region approximately 100 residues long within mammalian hepatocellular carcinoma-associated antigen 59 and similar proteins. Family members are found in a variety of eukaryotes, mainly as hypothetical proteins.
Probab=36.08 E-value=27 Score=21.69 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.9
Q ss_pred cchhHHHHHHHHHHHcCC
Q psy1719 7 EAEAALDHIEAEMAARGV 24 (73)
Q Consensus 7 ede~~~~~ie~~m~~~Gi 24 (73)
+|.-|..||+.+|+++.-
T Consensus 12 ~DkhM~~YIE~eL~kr~~ 29 (104)
T PF07052_consen 12 VDKHMMKYIEEELAKRKG 29 (104)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 678899999999999765
No 159
>PRK12423 LexA repressor; Provisional
Probab=36.04 E-value=1.3e+02 Score=20.44 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHcCC--CHHhHHHHHh-CchhccHHHHHHHHHcCC
Q psy1719 9 EAALDHIEAEMAARGV--TQALIDETRA-APETRMLEDLAAEAARGQ 52 (73)
Q Consensus 9 e~~~~~ie~~m~~~Gi--~~~~~~~~r~-a~e~~~l~~v~~ll~~Ga 52 (73)
-+.+++|.+++.+.|+ +..++.+... ......-+-++.|.+.|.
T Consensus 9 ~~il~~l~~~i~~~g~~Ps~~eia~~~g~~s~~~v~~~l~~L~~~G~ 55 (202)
T PRK12423 9 AAILAFIRERIAQAGQPPSLAEIAQAFGFASRSVARKHVQALAEAGL 55 (202)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCCC
Confidence 3678899999999999 6666666555 344444466677766653
No 160
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=35.40 E-value=36 Score=22.00 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCC----HHhHHHHHhCchhccHHHHHHHHHcCCCCC
Q psy1719 13 DHIEAEMAARGVT----QALIDETRAAPETRMLEDLAAEAARGQDLE 55 (73)
Q Consensus 13 ~~ie~~m~~~Gi~----~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn 55 (73)
-.|...+..+|++ ....+-+|.|.+.|.++|...|+..--+-|
T Consensus 43 K~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~~~W~~ml~~RN 89 (123)
T TIGR01987 43 KLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDESLWIAMLDDRN 89 (123)
T ss_pred HHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCHHHHHHHHHHhC
Confidence 3566777788884 223566899999999999999987655555
No 161
>KOG3609|consensus
Probab=34.81 E-value=21 Score=30.19 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=35.4
Q ss_pred HHHHHhCchhccHHHHHHHHHcC----CCCCCCCCCCCchHHHHhhhc
Q psy1719 29 IDETRAAPETRMLEDLAAEAARG----QDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 29 ~~~~r~a~e~~~l~~v~~ll~~G----advn~~d~~~G~TpLH~Aa~~ 72 (73)
.+....++|+|..-.|+..+..- .++|.+|+ =|.++||+|..+
T Consensus 26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~-lGr~al~iai~n 72 (822)
T KOG3609|consen 26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDP-LGRLALHIAIDN 72 (822)
T ss_pred hHHHHHHHHcCChHHHHHHHHhccccccchhccCh-Hhhhceeccccc
Confidence 45578889999999999888542 57889999 999999999753
No 162
>smart00352 POU Found in Pit-Oct-Unc transcription factors.
Probab=34.33 E-value=64 Score=19.51 Aligned_cols=32 Identities=25% Similarity=0.106 Sum_probs=26.3
Q ss_pred cccccchhHHHHHHHHHHHcCCCHHhHHHHHh
Q psy1719 3 YDICEAEAALDHIEAEMAARGVTQALIDETRA 34 (73)
Q Consensus 3 ~Diaede~~~~~ie~~m~~~Gi~~~~~~~~r~ 34 (73)
-|+.|=+...+.|.....+.|+||.++.....
T Consensus 4 ~~~~ele~~~~~lk~~R~~lGLTQ~dvA~~lg 35 (75)
T smart00352 4 TDPRELEAFAKTFKQRRIKLGFTQADVGLALG 35 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 36667778888899999999999988887755
No 163
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=33.91 E-value=39 Score=22.39 Aligned_cols=17 Identities=18% Similarity=0.390 Sum_probs=14.2
Q ss_pred HHHHcCCCHHhHHHHHh
Q psy1719 18 EMAARGVTQALIDETRA 34 (73)
Q Consensus 18 ~m~~~Gi~~~~~~~~r~ 34 (73)
.+..+|+|+++|+.+|+
T Consensus 5 RLl~~GFS~~eI~~LR~ 21 (140)
T PF13373_consen 5 RLLSAGFSPEEIQDLRS 21 (140)
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 45678999999999875
No 164
>PRK14135 recX recombination regulator RecX; Provisional
Probab=33.86 E-value=83 Score=22.00 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCCHHhHHHHHhCc-hhccHHHHH
Q psy1719 11 ALDHIEAEMAARGVTQALIDETRAAP-ETRMLEDLA 45 (73)
Q Consensus 11 ~~~~ie~~m~~~Gi~~~~~~~~r~a~-e~~~l~~v~ 45 (73)
...-|...+.++||+.+.+++....- +.+.++++.
T Consensus 124 g~~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~ 159 (263)
T PRK14135 124 GPRVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQ 159 (263)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHH
Confidence 34568888999999998888765432 334445443
No 165
>KOG4024|consensus
Probab=33.83 E-value=97 Score=22.80 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHHcCCCHHhHHHHH-------hCchhccHHHHHHHHHcC
Q psy1719 8 AEAALDHIEAEMAARGVTQALIDETR-------AAPETRMLEDLAAEAARG 51 (73)
Q Consensus 8 de~~~~~ie~~m~~~Gi~~~~~~~~r-------~a~e~~~l~~v~~ll~~G 51 (73)
|...-|+|-.+++++||++.-.+.+- ....-|.|+++|.++++|
T Consensus 216 D~~LyDlL~~~LeerG~d~~Fa~~Lv~laTa~EH~~YIglLeklkkF~~~q 266 (266)
T KOG4024|consen 216 DPDLYDLLFVYLEERGLDARFAKTLVALATAYEHSQYIGLLEKLKKFISKQ 266 (266)
T ss_pred CHHHHHHHHHHHHHcCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 55677889999999999976555532 223357888888888764
No 166
>PRK12686 carbamate kinase; Reviewed
Probab=33.82 E-value=31 Score=25.73 Aligned_cols=24 Identities=29% Similarity=0.744 Sum_probs=15.5
Q ss_pred Cccccc--cchhHHHH-----HHHHHHHcCC
Q psy1719 1 MPYDIC--EAEAALDH-----IEAEMAARGV 24 (73)
Q Consensus 1 mp~Dia--ede~~~~~-----ie~~m~~~Gi 24 (73)
||+|+| +...+.-| |.+++.++|+
T Consensus 73 ~pl~~~~a~sqg~iGy~~~q~l~~~l~~r~~ 103 (312)
T PRK12686 73 MPLDTCVAMSQGMIGYWLQNALNNELTERGI 103 (312)
T ss_pred CChhhhhhhccchhhHHHHHHHHHHHHhcCC
Confidence 699999 45555555 5566666554
No 167
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=33.81 E-value=1.1e+02 Score=18.41 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=34.6
Q ss_pred CCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCch
Q psy1719 24 VTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDPASGAT 64 (73)
Q Consensus 24 i~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~T 64 (73)
++.+.+.+...-.+..--..++.|-+.|.+|++... .|-+
T Consensus 20 ~SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~~-kGY~ 59 (79)
T COG1654 20 VSGEKLAEELGISRTAVWKHIQQLREEGVDIESVRG-KGYL 59 (79)
T ss_pred ccHHHHHHHHCccHHHHHHHHHHHHHhCCceEecCC-Ccee
Confidence 888888888888888888899999999999998877 6743
No 168
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=33.79 E-value=85 Score=17.12 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=31.5
Q ss_pred HHHHHHHHHcC-CCHHhHHHHHhCchhccHHHHHHHHHcCC
Q psy1719 13 DHIEAEMAARG-VTQALIDETRAAPETRMLEDLAAEAARGQ 52 (73)
Q Consensus 13 ~~ie~~m~~~G-i~~~~~~~~r~a~e~~~l~~v~~ll~~Ga 52 (73)
..|...+.++| ++..++.+.....+...-.|+..|-+.|.
T Consensus 3 ~~Il~~l~~~~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~ 43 (57)
T PF08220_consen 3 QQILELLKEKGKVSVKELAEEFGVSEMTIRRDLNKLEKQGL 43 (57)
T ss_pred HHHHHHHHHcCCEEHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 34566677777 88888888888888888889999988875
No 169
>KOG3120|consensus
Probab=32.09 E-value=88 Score=23.05 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=28.7
Q ss_pred HHHHHcCCCHHhHHH-HHhCch-hccHHHHHHHHHcCC
Q psy1719 17 AEMAARGVTQALIDE-TRAAPE-TRMLEDLAAEAARGQ 52 (73)
Q Consensus 17 ~~m~~~Gi~~~~~~~-~r~a~e-~~~l~~v~~ll~~Ga 52 (73)
+++.+||++.+++.+ +|+.+. -||++.+|.+.+.|.
T Consensus 64 k~Lheqgv~~~~ik~~~r~iP~~Pgmv~lik~~ak~g~ 101 (256)
T KOG3120|consen 64 KELHEQGVRIAEIKQVLRSIPIVPGMVRLIKSAAKLGC 101 (256)
T ss_pred HHHHHcCCCHHHHHHHHhcCCCCccHHHHHHHHHhCCC
Confidence 456789999877776 455555 699999999999997
No 170
>PF07746 LigA: Aromatic-ring-opening dioxygenase LigAB, LigA subunit; InterPro: IPR011986 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A (IPR004183 from INTERPRO) and B (IPR004183 from INTERPRO). LigAB is a protocatechuate 4,5-dioxygenase (1.13.11.8 from EC) that belongs to the extradiol class III enzyme family. The LigA subunit of this enzyme is multi-helical, containing a compact array of 6 short helices [].; PDB: 1BOU_A 1B4U_A.
Probab=31.90 E-value=62 Score=19.88 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=19.0
Q ss_pred HHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCC
Q psy1719 16 EAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQDL 54 (73)
Q Consensus 16 e~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadv 54 (73)
+..|++-|+|+++.+.++.. |+..|+..|+++
T Consensus 22 ~a~~~~~~Lt~eer~av~~r-------D~~~L~~~G~n~ 53 (88)
T PF07746_consen 22 EAYLDEYGLTEEERQAVLDR-------DWLALIALGGNI 53 (88)
T ss_dssp HHHHHCCT--HHHHHHHHCT--------HHHHHHTT--H
T ss_pred HHHHHHcCCCHHHHHHHHcC-------CHHHHHHCCccH
Confidence 45788999997777666654 466677777654
No 171
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=31.77 E-value=69 Score=17.57 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCCHHhHHHHHhCchh--ccHHHHHHHHHcCCCC
Q psy1719 14 HIEAEMAARGVTQALIDETRAAPET--RMLEDLAAEAARGQDL 54 (73)
Q Consensus 14 ~ie~~m~~~Gi~~~~~~~~r~a~e~--~~l~~v~~ll~~Gadv 54 (73)
||+....+=|= +++++|.++-- ..|.-+-.-|+.|.++
T Consensus 6 yl~~~t~efgd---DLd~lR~~~dF~~~sl~~Li~aL~~G~~~ 45 (47)
T PF14615_consen 6 YLQRLTDEFGD---DLDELRKAPDFTDKSLPLLIDALQQGTDM 45 (47)
T ss_pred HHHHHHHHHHH---HHHHHhcCCCCCchhHHHHHHHHHhcccc
Confidence 45555555443 48999988874 3344444446778765
No 172
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=31.63 E-value=1.1e+02 Score=21.84 Aligned_cols=43 Identities=35% Similarity=0.367 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCCHHhHHHH-HhCch-hccHHHHHHHHH--cCCCCC
Q psy1719 13 DHIEAEMAARGVTQALIDET-RAAPE-TRMLEDLAAEAA--RGQDLE 55 (73)
Q Consensus 13 ~~ie~~m~~~Gi~~~~~~~~-r~a~e-~~~l~~v~~ll~--~Gadvn 55 (73)
+-+-+.+.++|++++++.+. +..+- -+|.+-++.+-+ .|.++-
T Consensus 47 ~~vl~~L~~~gvt~~~I~~~l~~ip~~pgm~~~l~~l~~~~~~~~~~ 93 (234)
T PF06888_consen 47 DRVLQLLHEQGVTPEDIRDALRSIPIDPGMKELLRFLAKNQRGFDLI 93 (234)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCCccHHHHHHHHHhcCCCceEE
Confidence 34445678899999888664 33333 688888888844 465543
No 173
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=31.44 E-value=44 Score=23.34 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=26.6
Q ss_pred CCHHhHHHHHhCchhccHHHHHHHHHcCCCCC
Q psy1719 24 VTQALIDETRAAPETRMLEDLAAEAARGQDLE 55 (73)
Q Consensus 24 i~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn 55 (73)
|+...+.++|.....+|+++=+.|...+.|++
T Consensus 3 i~a~~ik~LR~~tga~~~~ck~AL~~~~gd~~ 34 (198)
T PRK12332 3 ITAKLVKELREKTGAGMMDCKKALEEANGDME 34 (198)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHH
Confidence 66777888898888889888888888887774
No 174
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=31.43 E-value=42 Score=24.84 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=28.0
Q ss_pred CCHHhHHHHHhCchhccHHHHHHHHHcCCCCC
Q psy1719 24 VTQALIDETRAAPETRMLEDLAAEAARGQDLE 55 (73)
Q Consensus 24 i~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn 55 (73)
||...+.+||...-.||+++=+.|...+.|++
T Consensus 3 isa~~IK~LRe~Tgagm~dCKkAL~e~~gDie 34 (290)
T TIGR00116 3 ITAQLVKELRERTGAGMMDCKKALTEANGDFE 34 (290)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHH
Confidence 67788999999999999999999988888875
No 175
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=31.40 E-value=71 Score=20.39 Aligned_cols=41 Identities=27% Similarity=0.191 Sum_probs=31.1
Q ss_pred cchhHHHHHHHHHHHcCCCHHhHHHH----HhCchhccHHHHHHH
Q psy1719 7 EAEAALDHIEAEMAARGVTQALIDET----RAAPETRMLEDLAAE 47 (73)
Q Consensus 7 ede~~~~~ie~~m~~~Gi~~~~~~~~----r~a~e~~~l~~v~~l 47 (73)
.-+.+...|++.+++.|+++..+..+ ....|.+.++-.+.|
T Consensus 15 ~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~l 59 (126)
T PRK07027 15 PAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARH 59 (126)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHh
Confidence 45668888999999999998877775 445566777777665
No 176
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=30.56 E-value=65 Score=18.95 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHcCCCHHhHHHHHh
Q psy1719 8 AEAALDHIEAEMAARGVTQALIDETRA 34 (73)
Q Consensus 8 de~~~~~ie~~m~~~Gi~~~~~~~~r~ 34 (73)
....+++|+..++++|+.++..+-.+.
T Consensus 19 g~ti~d~L~~~c~kr~l~~~~~~v~~~ 45 (72)
T cd01760 19 GMSVRDVLAKACKKRGLNPECCDVFLL 45 (72)
T ss_pred CCCHHHHHHHHHHHcCCCHHHEEEEEe
Confidence 456789999999999999765554333
No 177
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=29.86 E-value=95 Score=16.45 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHcCCCHHhHHHHHhCchh
Q psy1719 9 EAALDHIEAEMAARGVTQALIDETRAAPET 38 (73)
Q Consensus 9 e~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~ 38 (73)
+.+++-|.++.+++|...+.++.++..+++
T Consensus 7 Pa~k~~Lv~~A~~~gA~~~vl~~L~~lP~~ 36 (44)
T PF11387_consen 7 PADKDELVRHARRNGAPDDVLDALERLPDR 36 (44)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHCCcc
Confidence 456778889999999999888888887754
No 178
>COG3089 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.64 E-value=85 Score=18.88 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=33.0
Q ss_pred CccccccchhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCC
Q psy1719 1 MPYDICEAEAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQD 53 (73)
Q Consensus 1 mp~Diaede~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gad 53 (73)
+|.+.-+.+..-++|+.++-+.|.+-.+.+ ..-....++++.=+++|--
T Consensus 3 IPwq~le~eTLdNliesfVlREGTDyG~~E----~sL~qkv~~~r~qlq~Gea 51 (72)
T COG3089 3 IPWQELEPETLDNLIESFVLREGTDYGEHE----RSLEQKVADVRRQLQSGEA 51 (72)
T ss_pred CchHhhCHHHHHHHHHHHHHhcCCcCcccc----ccHHHHHHHHHHHHhcCce
Confidence 477777788888999999999998843222 2223345667777777743
No 179
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=29.47 E-value=1.2e+02 Score=18.51 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=22.9
Q ss_pred HHHHHHHcCCCHHhHHHHHhCchhccHHHHHHH
Q psy1719 15 IEAEMAARGVTQALIDETRAAPETRMLEDLAAE 47 (73)
Q Consensus 15 ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~l 47 (73)
-...+++.|+++.+|+.++...... -+.+..+
T Consensus 22 Wk~laR~LGLse~~I~~i~~~~~~~-~eq~~qm 53 (96)
T cd08315 22 WNRLMRQLGLSENEIDVAKANERVT-REQLYQM 53 (96)
T ss_pred HHHHHHHcCCCHHHHHHHHHHCCCC-HHHHHHH
Confidence 4567889999999999988776655 4444333
No 180
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=28.61 E-value=1.4e+02 Score=18.16 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=21.8
Q ss_pred HHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCC
Q psy1719 16 EAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQD 53 (73)
Q Consensus 16 e~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gad 53 (73)
+..|++.|+|+++.+.++.. |...|.+-|++
T Consensus 28 ea~~~~~gLt~eE~~aL~~~-------D~~~L~~lGvh 58 (81)
T cd07922 28 SAVFEEYGLTPAERAALREG-------TFGALTSIGVH 58 (81)
T ss_pred HHHHHHcCCCHHHHHHHHcc-------CHHHHHHcCCC
Confidence 45688999998887777764 34566666654
No 181
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=28.31 E-value=57 Score=22.47 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHcCCCHHhHH
Q psy1719 10 AALDHIEAEMAARGVTQALID 30 (73)
Q Consensus 10 ~~~~~ie~~m~~~Gi~~~~~~ 30 (73)
.+.++|.+.|.+|||++-.++
T Consensus 58 ~v~diL~~kl~KR~i~~k~ld 78 (161)
T PRK05412 58 QVKDILRSKLIKRGIDLKALD 78 (161)
T ss_pred HHHHHHHHHHHHcCCCHHHcC
Confidence 678999999999999964444
No 182
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=28.30 E-value=1.3e+02 Score=17.56 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCHHhHHHHHhCchh
Q psy1719 15 IEAEMAARGVTQALIDETRAAPET 38 (73)
Q Consensus 15 ie~~m~~~Gi~~~~~~~~r~a~e~ 38 (73)
-...+++.|++..+|+.+......
T Consensus 14 Wk~laR~LGls~~~I~~ie~~~~~ 37 (79)
T cd08784 14 HKRFFRKLGLSDNEIKVAELDNPQ 37 (79)
T ss_pred HHHHHHHcCCCHHHHHHHHHcCCc
Confidence 345778899999999998876654
No 183
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=28.10 E-value=77 Score=24.17 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=45.2
Q ss_pred chhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHc-CC---CCCCCCCCCCchHHHHh
Q psy1719 8 AEAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAAR-GQ---DLEYKDPASGATPSVNG 69 (73)
Q Consensus 8 de~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~-Ga---dvn~~d~~~G~TpLH~A 69 (73)
.+..+.-|.+.++..-.+...+.++...--+-.-+.|+.+++. |. +|+..-. +|.|-.|.-
T Consensus 41 ~~~lr~~l~~~~~~~~~~~~~l~~l~~~lg~~~a~av~~~~~~~~l~~~~id~Igs-HGQTv~H~P 105 (365)
T PRK09585 41 PDELRAALLALLQGGADELERLAELDTALGRLFAEAVNALLAEAGLSPEDIDAIGS-HGQTVRHRP 105 (365)
T ss_pred CHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEe-CCcccccCC
Confidence 4567777777777666777777777766667777778887754 66 7788889 999988853
No 184
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=27.63 E-value=95 Score=15.76 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCCHHhHHHHHh
Q psy1719 11 ALDHIEAEMAARGVTQALIDETRA 34 (73)
Q Consensus 11 ~~~~ie~~m~~~Gi~~~~~~~~r~ 34 (73)
.-..|...+.++|+++.++...-.
T Consensus 3 ~~~~l~~~r~~~gltq~~lA~~~g 26 (58)
T TIGR03070 3 IGMLVRARRKALGLTQADLADLAG 26 (58)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhC
Confidence 456788889999999866665443
No 185
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=27.04 E-value=67 Score=22.73 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=30.7
Q ss_pred HHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 30 DETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 30 ~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
.-++.++.+|-+.=|...++.|.++|. +.|-.|+.||
T Consensus 145 ~hl~~a~~kgll~F~letlkygg~~~~-------~vls~Av~yn 181 (192)
T PF03158_consen 145 QHLEKAAAKGLLPFVLETLKYGGNVDI-------IVLSQAVKYN 181 (192)
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCcccH-------HHHHHHHHhh
Confidence 447999999999999999999998873 6777777664
No 186
>PF01152 Bac_globin: Bacterial-like globin; InterPro: IPR001486 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry represents a group of haemoglobin-like proteins found in eubacteria, cyanobacteria, protozoa, algae and plants, but not in animals or yeast. These proteins have a truncated 2-over-2 rather than the canonical 3-over-3 alpha-helical sandwich fold []. This entry includes: HbN (or GlbN): a truncated haemoglobin-like protein that binds oxygen cooperatively with a very high affinity and a slow dissociation rate, which may exclude it from oxygen transport. It appears to be involved in bacterial nitric oxide detoxification and in nitrosative stress []. Cyanoglobin (or GlbN): a truncated haemoprotein found in cyanobacteria that has high oxygen affinity, and which appears to serve as part of a terminal oxidase, rather than as a respiratory pigment []. HbO (or GlbO): a truncated haemoglobin-like protein with a lower oxygen affinity than HbN. HbO associates with the bacterial cell membrane, where it significantly increases oxygen uptake over membranes lacking this protein. HbO appears to interact with a terminal oxidase, and could participate in an oxygen/electron-transfer process that facilitates oxygen transfer during aerobic metabolism []. Glb3: a nuclear-encoded truncated haemoglobin from plants that appears more closely related to HbO than HbN. Glb3 from Arabidopsis thaliana (Mouse-ear cress) exhibits an unusual concentration-independent binding of oxygen and carbon dioxide []. ; GO: 0019825 oxygen binding, 0015671 oxygen transport; PDB: 2BKM_B 1UVY_A 1DLW_A 2XYK_B 2IG3_A 2GKM_B 1S61_A 1S56_B 1RTE_B 2GLN_A ....
Probab=27.01 E-value=93 Score=18.87 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=24.7
Q ss_pred chhHHHHHHHHHHHcCCCHHhHHHHHhCch
Q psy1719 8 AEAALDHIEAEMAARGVTQALIDETRAAPE 37 (73)
Q Consensus 8 de~~~~~ie~~m~~~Gi~~~~~~~~r~a~e 37 (73)
-+..++.+.+.|.+.|+.+..++++....+
T Consensus 82 f~~~~~~~~~al~~~~v~~~~~~~~~~~~~ 111 (120)
T PF01152_consen 82 FDRWLELLKQALDELGVPEELIDELLARLE 111 (120)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 567889999999999999988888765444
No 187
>KOG3836|consensus
Probab=25.90 E-value=19 Score=29.52 Aligned_cols=30 Identities=17% Similarity=-0.019 Sum_probs=24.9
Q ss_pred HHHHHHHcCCCCCCCCCCCCchHHHHhhhcC
Q psy1719 43 DLAAEAARGQDLEYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 43 ~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~~ 73 (73)
-+-.|++.|+..+..|. .|.||+|+++..|
T Consensus 411 ~v~~lik~~~~~~~~d~-f~~~p~~~~~~sg 440 (605)
T KOG3836|consen 411 LVFTLIKKGAHPNDDDK-FGFTPLHIPQISG 440 (605)
T ss_pred ceeeeecccCccchhcc-cccccccccCCCC
Confidence 34457789999999999 9999999987643
No 188
>PF08360 TetR_C_5: QacR-like protein, C-terminal region; InterPro: IPR013571 This entry represents the C-terminal domain found in the multidrug-binding transcription regulator QacR (P23217 from SWISSPROT) from Staphylococcus aureus, which is a member of the TetR (tetracycline-resistance) transcriptional regulator family of proteins. QacR is able to bind various environmental agents, which include a number of cationic lipophilic compounds, and thus regulate the transcription of QacA (P23215 from SWISSPROT), a multidrug efflux pump []. The C-terminal region of QacR contains a multifaceted, expansive drug-binding pocket, which is composed of several separate, but linked, binding sites []. The C-terminal domains of QacR and TetR share a multi-helical, interlocking structure.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G0E_E 1JUM_A 1RPW_D 1QVT_B 2HQ5_D 1JT0_B 2DTZ_E 1JUP_D 1JT6_D 1JUS_E ....
Probab=25.67 E-value=1.4e+02 Score=19.14 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=37.9
Q ss_pred chhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCC
Q psy1719 8 AEAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQDLE 55 (73)
Q Consensus 8 de~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn 55 (73)
..+....++.++..+..+++.++.++.-.. +.++..+.+++.|++--
T Consensus 35 ~~pl~~a~~EF~~~~~~~~ev~~~l~~i~~-~~~~~~~~ileeGI~~G 81 (131)
T PF08360_consen 35 QTPLSKAGEEFYSNQSKNPEVLEKLNEIRR-KYLEFFQKILEEGIDSG 81 (131)
T ss_dssp SGGGHHHHHHHHHHCSSSHHHHHHHHHHHH-HHHHHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHHcccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence 456677888999999999998888877554 57888999999987654
No 189
>PRK05244 Der GTPase activator; Provisional
Probab=25.61 E-value=1e+02 Score=21.45 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCC
Q psy1719 9 EAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQ 52 (73)
Q Consensus 9 e~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Ga 52 (73)
+.+++-|+.-|.+-||+.++-++- ..+...-+|+-.++..|.
T Consensus 131 D~~LdRie~LM~~LGI~~edd~~~--~~~~~~~dDll~~fe~~~ 172 (177)
T PRK05244 131 DEKLDRIDELMEKLGISDDDDEEE--SEEEESDDDLLRLFEGGN 172 (177)
T ss_pred HHHHHHHHHHHHHhCCCcccccch--hccccCHHHHHHHHhccC
Confidence 468899999999999997654332 122233445555555554
No 190
>PRK14137 recX recombination regulator RecX; Provisional
Probab=25.32 E-value=1.5e+02 Score=20.46 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=24.7
Q ss_pred HHHHHHHHcCCCHHhHHHHHhCch-hccHHHHHHHHHc
Q psy1719 14 HIEAEMAARGVTQALIDETRAAPE-TRMLEDLAAEAAR 50 (73)
Q Consensus 14 ~ie~~m~~~Gi~~~~~~~~r~a~e-~~~l~~v~~ll~~ 50 (73)
.|..++.++||+.+.|+++...-+ ....+.+..++.+
T Consensus 106 rI~~eL~qKGI~~~lI~~al~~~d~ede~e~a~~l~~K 143 (195)
T PRK14137 106 RVRQTLRRRGVEETLIEETLAARDPQEEQQEARNLLER 143 (195)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 588999999999999988765432 2234444445444
No 191
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=25.22 E-value=3.2e+02 Score=21.32 Aligned_cols=57 Identities=23% Similarity=0.101 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCCHHhHHHH---HhC-----chhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhh
Q psy1719 11 ALDHIEAEMAARGVTQALIDET---RAA-----PETRMLEDLAAEAARGQDLEYKDPASGATPSVNGL 70 (73)
Q Consensus 11 ~~~~ie~~m~~~Gi~~~~~~~~---r~a-----~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa 70 (73)
+..|++.+++|+|++.++.+++ |.+ .....-.-+...-.+|..+-+.|. +|+=|++-
T Consensus 175 le~Y~~yy~~k~~~s~~e~~~~i~~r~a~~~~y~~~~r~~i~~~c~~rgI~lASHDD---aT~~hV~e 239 (377)
T COG3454 175 LEKYREYYQGKRGLSDEEFAEFIEERQALSARYSDPNRQAIAALCRERGIALASHDD---ATVEHVAE 239 (377)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHcCCceecCCc---CcHHHHHH
Confidence 5678899999999998777764 222 122334445566678888887766 58888763
No 192
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=24.91 E-value=56 Score=18.38 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=16.1
Q ss_pred cchhHHHHHHHHHHHcCCC
Q psy1719 7 EAEAALDHIEAEMAARGVT 25 (73)
Q Consensus 7 ede~~~~~ie~~m~~~Gi~ 25 (73)
-++.+..++++.|+++||.
T Consensus 38 ~~~~~~~~~~~~l~~~gV~ 56 (80)
T PF00070_consen 38 FDPDAAKILEEYLRKRGVE 56 (80)
T ss_dssp SSHHHHHHHHHHHHHTTEE
T ss_pred cCHHHHHHHHHHHHHCCCE
Confidence 3678889999999999986
No 193
>PRK09377 tsf elongation factor Ts; Provisional
Probab=24.71 E-value=64 Score=23.87 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=26.9
Q ss_pred CCCHHhHHHHHhCchhccHHHHHHHHHcCCCCC
Q psy1719 23 GVTQALIDETRAAPETRMLEDLAAEAARGQDLE 55 (73)
Q Consensus 23 Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn 55 (73)
.|+...+.+||...-.||+++=+.|.+.+.|++
T Consensus 3 ~is~~~IK~LR~~Tgagm~dCKkAL~e~~gD~e 35 (290)
T PRK09377 3 AITAALVKELRERTGAGMMDCKKALTEADGDIE 35 (290)
T ss_pred ccCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHH
Confidence 367778888888888888888888888877774
No 194
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=24.69 E-value=82 Score=24.82 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHcCCCHHhHHHHHhCchhcc
Q psy1719 9 EAALDHIEAEMAARGVTQALIDETRAAPETRM 40 (73)
Q Consensus 9 e~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~ 40 (73)
+.-.+.|.+.|+++|+++++.+-.....+.|+
T Consensus 366 e~~~d~L~~ri~~~gl~~e~~~wYld~~kyG~ 397 (435)
T COG0017 366 EHDYDLLVERIKEKGLDPESYEWYLDLRKYGM 397 (435)
T ss_pred cccHHHHHHHHHHcCCChHHhHHHHHHHHcCC
Confidence 45578999999999999988888887777765
No 195
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=24.53 E-value=89 Score=19.88 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCC-CHHh-HHHHHhCchhccHHHHHHHHHc
Q psy1719 11 ALDHIEAEMAARGV-TQAL-IDETRAAPETRMLEDLAAEAAR 50 (73)
Q Consensus 11 ~~~~ie~~m~~~Gi-~~~~-~~~~r~a~e~~~l~~v~~ll~~ 50 (73)
+--.|...+..+|+ .... -+-+|.|.+.|.++|...|+..
T Consensus 43 aWK~lK~~L~~~G~~~~~spr~~~r~A~~~glI~d~e~Wl~m 84 (124)
T PF08780_consen 43 AWKTLKDYLEYEGISECNSPRDVFREAFKAGLIDDGEIWLDM 84 (124)
T ss_dssp HHHHHHHHHHHCTSSCCTSHHHHHHHHHHTTSSSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34467778888998 2222 4558999999999999888764
No 196
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=24.13 E-value=1.3e+02 Score=19.54 Aligned_cols=44 Identities=11% Similarity=0.005 Sum_probs=32.2
Q ss_pred ccccccchhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHH
Q psy1719 2 PYDICEAEAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLA 45 (73)
Q Consensus 2 p~Diaede~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~ 45 (73)
|-+...-.....++....+..|++.+.++.+..+...-....++
T Consensus 13 ~a~~~~~~~vr~~~~~~a~~~g~~~~~~~~l~lav~Ea~~Nai~ 56 (159)
T TIGR01924 13 PAKPEYVGLIRLTLSGIASRAGYTYDDIEDLKIAVSEACTNAVK 56 (159)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 33444456778899999999999998888888776665554443
No 197
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=23.87 E-value=1.1e+02 Score=17.99 Aligned_cols=32 Identities=28% Similarity=0.196 Sum_probs=20.2
Q ss_pred HHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCC
Q psy1719 16 EAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQDL 54 (73)
Q Consensus 16 e~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadv 54 (73)
+..|++-|+|+++.+.++.. |+..|++-|+++
T Consensus 27 ~a~~~~~~Lt~eE~~al~~r-------D~~~L~~lG~~~ 58 (77)
T cd07321 27 EAVLAEYGLTPEEKAALLAR-------DVGALYVLGVNP 58 (77)
T ss_pred HHHHHHcCCCHHHHHHHHcC-------CHHHHHHcCCCH
Confidence 35678888887777766654 344555555543
No 198
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=23.84 E-value=1.3e+02 Score=22.31 Aligned_cols=60 Identities=20% Similarity=0.056 Sum_probs=31.2
Q ss_pred ccccchhHHHHHH---HHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcC-CCCCCCCCCCCchHHHH
Q psy1719 4 DICEAEAALDHIE---AEMAARGVTQALIDETRAAPETRMLEDLAAEAARG-QDLEYKDPASGATPSVN 68 (73)
Q Consensus 4 Diaede~~~~~ie---~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~G-advn~~d~~~G~TpLH~ 68 (73)
|..+++....|.+ ..++++|++ .+.++...+ ....-.-.+++.| +|.=.+-. .+.|+.|+
T Consensus 69 d~~~~~~~~~y~~~~~~lr~rKG~~---~~~a~~~~~-~~~~~a~~mv~~G~aD~lv~G~-~~t~~~~l 132 (319)
T PF01515_consen 69 DPEDSEKLEEYAEEYYELRQRKGMT---PEEARREVR-DPNYFAAMMVRLGDADALVKGL-IHTTADML 132 (319)
T ss_dssp -TTTSTTHHHHHHHHHHHHTTCTS----HHHHHHHTT-SHHHHHHHHHHTTSSSEEEE-S-SSHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhccccCC---HHHHHHHHH-HHHHHHHHHHHcCCCCEEecCC-CCCHHHHH
Confidence 4455555555554 557778999 466666655 3444444566665 33333444 45555444
No 199
>KOG0511|consensus
Probab=23.54 E-value=66 Score=25.62 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=31.2
Q ss_pred cCCCHHhHHH-----HHhCchhccHHHHHHHHHcCCCCCCCCCCCCch
Q psy1719 22 RGVTQALIDE-----TRAAPETRMLEDLAAEAARGQDLEYKDPASGAT 64 (73)
Q Consensus 22 ~Gi~~~~~~~-----~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~T 64 (73)
-|+....++. +--|.-+|+...||+|+++||--+ +|.-+|.-
T Consensus 58 tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~-rdtf~G~R 104 (516)
T KOG0511|consen 58 TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS-RDTFDGDR 104 (516)
T ss_pred hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc-ccccCcch
Confidence 6777666665 566777999999999999998665 44436654
No 200
>PF05778 Apo-CIII: Apolipoprotein CIII (Apo-CIII); InterPro: IPR008403 This family consists of several mammalian apolipoprotein CIII (Apo-CIII) sequences. Apolipoprotein C-III is a 79-residue glycoprotein. It is synthesised in the intestine and liver as part of the very low density lipoprotein (VLDL) and the high density lipoprotein (HDL) particles. Owing to its positive correlation with plasma triglyceride (Tg) levels, Apo-CIII is suggested to play a role in Tg metabolism and is therefore of interest regarding atherosclerosis. However, unlike other apolipoproteins such as Apo-AI, Apo E or CII for which many naturally occurring mutations are known, the structure-function relationships of apo C-III remains a subject of debate. One possibility is that apo C-III inhibits lipoprotein lipase (LPL) activity, as shown by in vitro experiments. Another suggestion, is that elevated levels of Apo-CIII displace other apolipoproteins at the lipoprotein surface, modifying their clearance from plasma [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 2JQ3_A.
Probab=23.37 E-value=1.8e+02 Score=17.46 Aligned_cols=46 Identities=13% Similarity=0.108 Sum_probs=34.5
Q ss_pred ccchhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCC
Q psy1719 6 CEAEAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQD 53 (73)
Q Consensus 6 aede~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gad 53 (73)
+|++..++..+.+|++.--+. -+.|-+..|..+-..++-|+..|.+
T Consensus 2 ~e~~sll~~mqdYmqqAtktA--qdaLtsVqES~vAqqAr~wmt~~~s 47 (70)
T PF05778_consen 2 AEDSSLLGAMQDYMQQATKTA--QDALTSVQESQVAQQARDWMTDSFS 47 (70)
T ss_dssp -TTS-THHHHHHHHHHHGGGH--HHHHHGGGGGGGHHHHHHHTTTTTT
T ss_pred ccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 467788999999999987663 4556777788888888888877654
No 201
>PRK06813 homoserine dehydrogenase; Validated
Probab=22.99 E-value=58 Score=24.50 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHcCCCHHhHHHHHhCchhccH
Q psy1719 10 AALDHIEAEMAARGVTQALIDETRAAPETRML 41 (73)
Q Consensus 10 ~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l 41 (73)
.|.+||-++|.+.|.+- -+.++.|.+.|..
T Consensus 178 GT~NyIL~~m~~~g~~f--~eal~~Aq~lGya 207 (346)
T PRK06813 178 GTTNYILTKMNEEDITF--EEALKEAQSKGIA 207 (346)
T ss_pred chHHHHHhhhhhcCCCH--HHHHHHHHHcCCC
Confidence 58899999999999884 2335666555543
No 202
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=22.86 E-value=2.1e+02 Score=18.93 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHHHcCCCHH--hHHHHHhCc-hhccHHHHHHHHHcCC
Q psy1719 8 AEAALDHIEAEMAARGVTQA--LIDETRAAP-ETRMLEDLAAEAARGQ 52 (73)
Q Consensus 8 de~~~~~ie~~m~~~Gi~~~--~~~~~r~a~-e~~~l~~v~~ll~~Ga 52 (73)
+-..+.+|+..+.+.|+.+. ++.+.-... ....-..++.|.+.|.
T Consensus 8 q~~iL~~l~~~~~~~~~~~~~~ela~~~~~~s~~tv~~~l~~L~~~g~ 55 (199)
T TIGR00498 8 QQEVLDLIRAHIESTGYPPSIREIARAVGLRSPSAAEEHLKALERKGY 55 (199)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCChHHHHHHHHHHHHCCC
Confidence 45778899999888876544 666666665 6777788888888886
No 203
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.59 E-value=61 Score=22.80 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=23.0
Q ss_pred hccHHHHHHHHHcCCCCCCCCCCCCch
Q psy1719 38 TRMLEDLAAEAARGQDLEYKDPASGAT 64 (73)
Q Consensus 38 ~~~l~~v~~ll~~Gadvn~~d~~~G~T 64 (73)
+--|+|++.+++.|.|.-+.|.++|.-
T Consensus 28 YVTL~dla~mVk~gedF~V~DAKsgeD 54 (193)
T COG5394 28 YVTLEDLAQMVKEGEDFRVQDAKSGED 54 (193)
T ss_pred eeeHHHHHHHHhcCCceEEeeccccch
Confidence 456899999999999999999877754
No 204
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=22.43 E-value=1.9e+02 Score=19.79 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCCHHhHHHHHh-CchhccHHHHHHHH
Q psy1719 13 DHIEAEMAARGVTQALIDETRA-APETRMLEDLAAEA 48 (73)
Q Consensus 13 ~~ie~~m~~~Gi~~~~~~~~r~-a~e~~~l~~v~~ll 48 (73)
..|..++.++||+.+.++.+.. ..+......++.++
T Consensus 88 ~rl~qeL~qkGi~~~~Ie~aL~~~~~~~~~~~a~~~~ 124 (174)
T COG2137 88 ARLKQELKQKGIDDEIIEEALELIDEEDEQERARKVL 124 (174)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhccchHHHHHHHHHHH
Confidence 4577888889999998888776 44444444444433
No 205
>COG2323 Predicted membrane protein [Function unknown]
Probab=22.32 E-value=91 Score=22.30 Aligned_cols=35 Identities=11% Similarity=-0.088 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHH
Q psy1719 14 HIEAEMAARGVTQALIDETRAAPETRMLEDLAAEA 48 (73)
Q Consensus 14 ~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll 48 (73)
+.++.|++.++|.+++....+...--.+++|++-+
T Consensus 103 i~e~~Lkk~rlt~ddL~~~LR~kgi~~l~dV~~Ai 137 (224)
T COG2323 103 IDEENLKKSRLTIDDLLMKLRQKGIFDLADVEFAI 137 (224)
T ss_pred EcHHHHHHhcCCHHHHHHHHHHcCCCcHHHhhhhe
Confidence 56788999999977777655566666788887643
No 206
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=22.23 E-value=1.5e+02 Score=19.81 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCC
Q psy1719 10 AALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEY 56 (73)
Q Consensus 10 ~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~ 56 (73)
..+..+-+++.++|++.+-+ +|.......+..++..+..|..++.
T Consensus 22 ~il~~~i~~l~~~gl~~eGI--FR~~g~~~~i~~l~~~~d~~~~~~~ 66 (189)
T cd04393 22 AVVRHIVEYLEQHGLEQEGL--FRVNGNAETVEWLRQRLDSGEEVDL 66 (189)
T ss_pred hHHHHHHHHHHHcCCCCCCe--eeCCCCHHHHHHHHHHHcCCCCCCc
Confidence 45556666777788885322 6777778888888888999987764
No 207
>cd07925 LigA_like_1 The A subunit of Uncharacterized proteins with similarity to Protocatechuate 4,5-dioxygenase (LigAB). The proteins of unknown function in this subfamily are similar to the A subunit of the Protocatechuate (PCA) 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds.
Probab=22.18 E-value=1.8e+02 Score=18.66 Aligned_cols=47 Identities=21% Similarity=0.155 Sum_probs=30.2
Q ss_pred HHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCC----CCCCCchHHHHhh
Q psy1719 16 EAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYK----DPASGATPSVNGL 70 (73)
Q Consensus 16 e~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~----d~~~G~TpLH~Aa 70 (73)
+..+.+-|+|+++-+.++. .|+..||..|+++-.. -- .|.+.+|+.+
T Consensus 37 ~Ay~~~~~Lteeqr~av~~-------RD~~~li~~Ggn~y~L~Kl~~~-~G~s~q~i~a 87 (106)
T cd07925 37 EAYCEKFGLTPEQKQAVRN-------RDVLRMLEAGGNIYYLAKLAGI-LGLNMQDIGG 87 (106)
T ss_pred HHHHHHcCCCHHHHHHHHH-------hhHHHHHHccCcHHHHHHHHHH-hCCcHHHHHH
Confidence 4567889999766666554 3577778888876532 23 4555666554
No 208
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=22.15 E-value=1.7e+02 Score=17.87 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHcC-CCHHhHHHHHhCchhccHHHHHHHHHcCC
Q psy1719 8 AEAALDHIEAEMAARG-VTQALIDETRAAPETRMLEDLAAEAARGQ 52 (73)
Q Consensus 8 de~~~~~ie~~m~~~G-i~~~~~~~~r~a~e~~~l~~v~~ll~~Ga 52 (73)
.......|+.+|+..| |+..+++.+ .+..+..++.|.+.|.
T Consensus 65 s~r~a~~l~~e~~~~g~v~~~di~~A----q~~iv~~~r~l~~~G~ 106 (110)
T PF01706_consen 65 SKRAAEMLREEMEALGPVRLSDIEEA----QREIVEIVRRLEEEGE 106 (110)
T ss_dssp -HHHHHHHHHHHHHH-S--HHHHHHH----HHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHH----HHHHHHHHHHHHHCcC
Confidence 3456788999999987 776666554 4567888888888883
No 209
>KOG0360|consensus
Probab=22.04 E-value=87 Score=25.39 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=26.3
Q ss_pred CHHhHHHHHhCchhccHHHHHHHHHcCCCCC
Q psy1719 25 TQALIDETRAAPETRMLEDLAAEAARGQDLE 55 (73)
Q Consensus 25 ~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn 55 (73)
+++..++.|..+..-.++.++.++..||||=
T Consensus 259 dp~kle~ir~~e~~itkeRi~kIl~~ganvV 289 (545)
T KOG0360|consen 259 DPEKLEQIRQREQDITKERIKKILATGANVV 289 (545)
T ss_pred ChHHHHHHHHHHhHhHHHHHHHHHhcCCcEE
Confidence 5677888888888888899999999999874
No 210
>KOG3609|consensus
Probab=22.01 E-value=1.9e+02 Score=24.72 Aligned_cols=45 Identities=11% Similarity=-0.094 Sum_probs=30.4
Q ss_pred HHHHHhCchhccHHHHHHHHHcCCCC---------CCCCCCCCchHHHHhhhcC
Q psy1719 29 IDETRAAPETRMLEDLAAEAARGQDL---------EYKDPASGATPSVNGLRYK 73 (73)
Q Consensus 29 ~~~~r~a~e~~~l~~v~~ll~~Gadv---------n~~d~~~G~TpLH~Aa~~~ 73 (73)
-+.+..|-..+....|+.++.+-.+- |...-..+-|||..||+.|
T Consensus 89 gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~N 142 (822)
T KOG3609|consen 89 GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLN 142 (822)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhc
Confidence 35666777777888888887664333 3232225779999999876
No 211
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=22.01 E-value=1.8e+02 Score=17.61 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCCHHhHHHHHhCc---hhccHHHHHHHHHcC
Q psy1719 14 HIEAEMAARGVTQALIDETRAAP---ETRMLEDLAAEAARG 51 (73)
Q Consensus 14 ~ie~~m~~~Gi~~~~~~~~r~a~---e~~~l~~v~~ll~~G 51 (73)
.=.++|+.-|++..+|+....-. +....+=++.|.+++
T Consensus 13 ~wk~F~R~LGLsdn~Ie~~E~~~~~~rda~y~ML~~W~~q~ 53 (77)
T cd08815 13 RWKEFVRTLGLREAEIEAVELEIGRFRDQQYEMLKRWRQQQ 53 (77)
T ss_pred HHHHHHHHcCCcHhHHHHHHhcccchHHHHHHHHHHHHHcC
Confidence 34678999999988877754333 223333445566553
No 212
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=21.97 E-value=77 Score=23.82 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=28.2
Q ss_pred CCCHHhHHHHHhCchhccHHHHHHHHHcCCCCC
Q psy1719 23 GVTQALIDETRAAPETRMLEDLAAEAARGQDLE 55 (73)
Q Consensus 23 Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn 55 (73)
.||...+.+||...--||+++=|.|...+.|++
T Consensus 3 ~ita~~VKeLRe~TgAGMmdCKkAL~E~~Gd~E 35 (296)
T COG0264 3 EITAALVKELREKTGAGMMDCKKALEEANGDIE 35 (296)
T ss_pred cccHHHHHHHHHHhCCcHHHHHHHHHHcCCCHH
Confidence 367788999999999999999999988877765
No 213
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=21.90 E-value=90 Score=16.95 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=13.3
Q ss_pred HHHHHHHHcCCCHHhHHHHH
Q psy1719 14 HIEAEMAARGVTQALIDETR 33 (73)
Q Consensus 14 ~ie~~m~~~Gi~~~~~~~~r 33 (73)
-++..|..+|++.+.|+.-=
T Consensus 15 elrd~LEe~g~~~eeIe~kv 34 (46)
T PF08312_consen 15 ELRDELEEQGYSEEEIEEKV 34 (46)
T ss_dssp HHHHHHHHHT--HHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 36778889999988777643
No 214
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=21.67 E-value=1.7e+02 Score=18.94 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=32.9
Q ss_pred ccccccchhHHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHHcCC
Q psy1719 2 PYDICEAEAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAARGQ 52 (73)
Q Consensus 2 p~Diaede~~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Ga 52 (73)
|-+...-..++.++.......|++.+.++.++.+... .+.-.+++|.
T Consensus 13 ~a~~~~~~~vr~~v~~~~~~~g~~~~~~~~l~lav~E----a~~Nai~Hg~ 59 (161)
T PRK04069 13 PAKAEYVSIIRLTLSGVANRMGFSYDDIEDMKIAVSE----ACTNAVQHAY 59 (161)
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHhcc
Confidence 3444455677888888999999999888888776554 3444455663
No 215
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=21.63 E-value=1.3e+02 Score=17.50 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=24.7
Q ss_pred ccccccc----hhHHHHHHHHHHHcCCCHHhHHHHHhC
Q psy1719 2 PYDICEA----EAALDHIEAEMAARGVTQALIDETRAA 35 (73)
Q Consensus 2 p~Diaed----e~~~~~ie~~m~~~Gi~~~~~~~~r~a 35 (73)
|+++-++ +.+..+.-+-|+.+|+.+..++..+..
T Consensus 24 PL~~~~~~~~~~~~~~~~~~iLk~~g~lPp~i~l~kei 61 (71)
T PF09350_consen 24 PLPLDDDNPYWPAEERMANRILKNAGYLPPWIELRKEI 61 (71)
T ss_pred CCCCCCCCcCCCHHHHHHHHhhcccCCCCHHHHHHHHH
Confidence 5554333 467777888889999999888776665
No 216
>PF04964 Flp_Fap: Flp/Fap pilin component; InterPro: IPR007047 This entry is for the fimbriae associated protein Flp/Fap pilin component.
Probab=21.57 E-value=66 Score=17.24 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=10.2
Q ss_pred CCCCCCchHHHHhh
Q psy1719 57 KDPASGATPSVNGL 70 (73)
Q Consensus 57 ~d~~~G~TpLH~Aa 70 (73)
+|+ +|+|+.-+|.
T Consensus 3 ~de-~GaTaiEYal 15 (46)
T PF04964_consen 3 RDE-RGATAIEYAL 15 (46)
T ss_pred ccc-ccchHHHHHH
Confidence 577 9999987763
No 217
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=21.51 E-value=1.7e+02 Score=16.71 Aligned_cols=41 Identities=10% Similarity=-0.001 Sum_probs=28.0
Q ss_pred HHHHHHHHHH--cCCCHHhHHHHHhCchhccHHHHHHHHHcCC
Q psy1719 12 LDHIEAEMAA--RGVTQALIDETRAAPETRMLEDLAAEAARGQ 52 (73)
Q Consensus 12 ~~~ie~~m~~--~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Ga 52 (73)
.+-|.++|++ .+++..++.+.-......--.-+..|.+.|.
T Consensus 2 ke~Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~ 44 (62)
T PF04703_consen 2 KEKILEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKEGK 44 (62)
T ss_dssp HHCHHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTS
T ss_pred cHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 3445555655 6688888888877777777777778878884
No 218
>PHA02682 ORF080 virion core protein; Provisional
Probab=21.35 E-value=1.8e+02 Score=21.30 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHH------------cCCCHHhHHHHHhCchhccHHHHHHHHHcC
Q psy1719 8 AEAALDHIEAEMAA------------RGVTQALIDETRAAPETRMLEDLAAEAARG 51 (73)
Q Consensus 8 de~~~~~ie~~m~~------------~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~G 51 (73)
|..+.+.|+++++. .|++ -+|+.+|+. -++-++|++.|+..|
T Consensus 206 d~~~k~~ikkeladiadsvrdl~aeS~~Lt-rDIE~AKst-Tq~AIdDLRrLl~~~ 259 (280)
T PHA02682 206 DNDDKDLIKKELADIADSVRDLNAESLSLT-RDIENAKST-TQAAIDDLRRLLTGG 259 (280)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhhhhhH-HHHHHHHhh-HHHHHHHHHHHHhcC
Confidence 46778888888875 3333 345555543 367788999998776
No 219
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.28 E-value=80 Score=21.84 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHcCCCHHhHH
Q psy1719 9 EAALDHIEAEMAARGVTQALID 30 (73)
Q Consensus 9 e~~~~~ie~~m~~~Gi~~~~~~ 30 (73)
++++|-|..-|++-||+.++-+
T Consensus 132 D~~LDRI~~LMe~LGl~~dddE 153 (169)
T COG3078 132 DAKLDRIDELMEKLGLSYDDDE 153 (169)
T ss_pred HHHHHHHHHHHHHhCCccCCch
Confidence 4789999999999999865543
No 220
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=21.15 E-value=94 Score=21.36 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHcCCCHHhHH
Q psy1719 10 AALDHIEAEMAARGVTQALID 30 (73)
Q Consensus 10 ~~~~~ie~~m~~~Gi~~~~~~ 30 (73)
.+.++|...|-+|||+.-.++
T Consensus 58 ~v~diL~~kl~KR~i~~k~ld 78 (160)
T PF04461_consen 58 QVKDILRSKLIKRGIDLKALD 78 (160)
T ss_dssp HHHHHHHHHHHHTT--GGGEE
T ss_pred HHHHHHHHHHHHcCCCHHHcC
Confidence 688999999999999964443
No 221
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=20.97 E-value=97 Score=20.24 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHHcCCCHHhH
Q psy1719 8 AEAALDHIEAEMAARGVTQALI 29 (73)
Q Consensus 8 de~~~~~ie~~m~~~Gi~~~~~ 29 (73)
.++|.++++.-+++++++++++
T Consensus 19 ~~at~eLl~~ii~~N~l~~edi 40 (117)
T TIGR01796 19 GEAVAELLTELMERNELTPEDL 40 (117)
T ss_pred HHHHHHHHHHHHHHcCCCHHHE
Confidence 3588999999999999997554
No 222
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.71 E-value=1.6e+02 Score=23.17 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=29.7
Q ss_pred CCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhh
Q psy1719 23 GVTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLR 71 (73)
Q Consensus 23 Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~ 71 (73)
.++.+.+..+...+....+..-......|+.+| . .||--||.|-+
T Consensus 12 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~g~~~n---~-e~r~~lh~~~r 56 (446)
T COG0166 12 LLNDETLELLLELADEADLAEKIDAMFKGAKIN---T-EGRAVLHTALR 56 (446)
T ss_pred cCchHHHHHHHHHHHHHhHHHHHHHhhcCCCCC---c-ccchhhhhhhh
Confidence 344444555555555555555556678899999 5 78899998754
No 223
>KOG2446|consensus
Probab=20.49 E-value=1.1e+02 Score=24.77 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=38.0
Q ss_pred HcCCCHHhHHHHHhCchhccHHHHHHHHHcCCCCCCCCCCCCchHHHHhhhc
Q psy1719 21 ARGVTQALIDETRAAPETRMLEDLAAEAARGQDLEYKDPASGATPSVNGLRY 72 (73)
Q Consensus 21 ~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~~Gadvn~~d~~~G~TpLH~Aa~~ 72 (73)
++++|.+.++.+...+....+...+--.-+|--+|.. .|+.-||+|-|+
T Consensus 58 kn~~tdE~v~~l~~laK~~~v~~~~d~mf~Ge~iN~t---E~RaVlHvaLRn 106 (546)
T KOG2446|consen 58 KNRITDEIVDLLLMLAKFRAVEEARDAMFKGEHINFT---ENRAVLHVALRN 106 (546)
T ss_pred cccccHHHHHHHHHHHHHhhHHHHHHHHhcCcccCCC---CCceeeeHHhhC
Confidence 5788988888877777777777777777889899854 456889999875
No 224
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=20.47 E-value=1.3e+02 Score=14.91 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=11.3
Q ss_pred HHHHHcCCCHHhHHH
Q psy1719 17 AEMAARGVTQALIDE 31 (73)
Q Consensus 17 ~~m~~~Gi~~~~~~~ 31 (73)
.++++.|+|++++.+
T Consensus 9 rYV~eh~ls~ee~~~ 23 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAE 23 (28)
T ss_pred hhHHhcCCCHHHHHH
Confidence 467889999877655
No 225
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=20.29 E-value=68 Score=20.54 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCCHHhHHHHHhCchhccHHHHHHHHH
Q psy1719 11 ALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAA 49 (73)
Q Consensus 11 ~~~~ie~~m~~~Gi~~~~~~~~r~a~e~~~l~~v~~ll~ 49 (73)
+...||++|++-|+.. + .-..+++.-++.++.|.+
T Consensus 24 p~~~IE~Am~e~~~~v---~-p~ksak~QalevIk~L~~ 58 (125)
T PF09377_consen 24 PPTRIEKAMKEAHFSV---D-PNKSAKQQALEVIKKLKE 58 (125)
T ss_dssp -HHHHHHHHHHTTS-S---S-TTS-HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhCCccc---C-CCCCHHHHHHHHHHHHHH
Confidence 4678999999999883 3 334556667888887754
No 226
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=20.25 E-value=1.7e+02 Score=18.18 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=26.9
Q ss_pred cccccchhHHHHHHH---HHHHcCCCHHhHHHHHhC
Q psy1719 3 YDICEAEAALDHIEA---EMAARGVTQALIDETRAA 35 (73)
Q Consensus 3 ~Diaede~~~~~ie~---~m~~~Gi~~~~~~~~r~a 35 (73)
.||++-+.+..++++ ...++-+|+.++....+.
T Consensus 1 ~DIv~i~Ri~~~~~~~~~~f~~rift~~E~~~~~~~ 36 (116)
T PRK14663 1 VDIVDLERIEKAYNRYGVKFLEKILTPEEIELCLQK 36 (116)
T ss_pred CceEEHHHHHHHHHhhchHHHHHhCCHHHHHHHHhc
Confidence 489999999999975 678899999888776543
No 227
>PRK12338 hypothetical protein; Provisional
Probab=20.10 E-value=99 Score=23.18 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.0
Q ss_pred ccchhHHHHHHHHHHHcCCCH
Q psy1719 6 CEAEAALDHIEAEMAARGVTQ 26 (73)
Q Consensus 6 aede~~~~~ie~~m~~~Gi~~ 26 (73)
|.++++++-|+++++++|+-.
T Consensus 293 a~~~e~l~~i~~~L~~~G~L~ 313 (319)
T PRK12338 293 APDEESLNRIIEELEEEGLLY 313 (319)
T ss_pred eCCHHHHHHHHHHHHHCCccc
Confidence 579999999999999999873
Done!