RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1719
         (73 letters)



>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2,
          protein structure initiative, TI protein; HET: GOL;
          1.76A {Bordetella bronchiseptica} PDB: 3k4w_A
          Length = 291

 Score = 26.7 bits (59), Expect = 0.56
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 9  EAALDHIEAEMAARGVTQALIDETRAAPETRMLEDLAAEAAR 50
          E +L+ +  EMAA G+ Q +     ++    +     A  A+
Sbjct: 46 EKSLELMFEEMAAAGIEQGVCVGRNSSVLGSVSNADVAAVAK 87


>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB:
           3o90_A 3o91_A* 3o92_A* 3o93_A*
          Length = 211

 Score = 24.2 bits (53), Expect = 4.9
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 9   EAALDHIEAEMAARGVTQALID 30
           + AL H +  + A+ V + L +
Sbjct: 187 QFALGHFKNTLGAKLVDENLNE 208


>2pnn_A Transient receptor potential cation channel subfa member 1;
          TRPV1, ankyrin repeat domain, transport protein; HET:
          ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
          Length = 273

 Score = 24.0 bits (52), Expect = 5.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 41 LEDLAAEAARGQDLEYKDPASGATP 65
          L  L     R  D E+KDP +G T 
Sbjct: 33 LPFLQRSKKRLTDSEFKDPETGKTC 57


>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis,
           isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1
           c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
          Length = 572

 Score = 23.6 bits (51), Expect = 8.2
 Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 6/52 (11%)

Query: 28  LIDETRAAPETRMLEDLAAEA------ARGQDLEYKDPASGATPSVNGLRYK 73
            +D   A      L+             +    +Y DP   +     G+R+ 
Sbjct: 454 QVDSAGANKMMEHLKTKFQYFEQLKQGNKADIYDYVDPVDQSVSKNQGVRFV 505


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.312    0.127    0.351 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,188,507
Number of extensions: 62536
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 36
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)