RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1719
         (73 letters)



>d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter
           amalonaticus [TaxId: 35703]}
          Length = 160

 Score = 26.7 bits (59), Expect = 0.22
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 12  LDHIEAEMAAR-GVTQALIDETRAAPETRMLEDLAAE 47
           +D      A R G++QAL+D T  A      E +  E
Sbjct: 121 IDGNLLHTAVRYGLSQALLDATALASGRLKTEVVCDE 157


>d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium
           tetanomorphum [TaxId: 1553]}
          Length = 160

 Score = 26.3 bits (58), Expect = 0.27
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 9   EAALDHIEAEMAAR-GVTQALIDETRAAPETRMLEDLAAE 47
           +  ++      A R G+TQA++D      +  M E +  E
Sbjct: 118 KMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIRDE 157


>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 131

 Score = 24.9 bits (54), Expect = 0.76
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 29  IDETRAAPETRMLEDLAAEA 48
           I+  +  PE   L DL +E 
Sbjct: 102 INTKKINPENSKLSDLDSET 121


>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium
           tuberculosis, HbN [TaxId: 1773]}
          Length = 127

 Score = 22.6 bits (48), Expect = 5.6
 Identities = 6/35 (17%), Positives = 9/35 (25%)

Query: 1   MPYDICEAEAALDHIEAEMAARGVTQALIDETRAA 35
               +        H+   + A GV    I E    
Sbjct: 83  RGITMHHFSLVAGHLADALTAAGVPSETITEILGV 117


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.127    0.351 

Gapped
Lambda     K      H
   0.267   0.0689    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 260,066
Number of extensions: 9276
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 9
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)