BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17191
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 117/176 (66%), Gaps = 23/176 (13%)
Query: 203 YNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLP-M 261
YNNQP++ L K+ A SIK+ EAVWFGC+V K F +KLGL+D+ +++ + VF VSL M
Sbjct: 299 YNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFG--VSLKNM 356
Query: 262 SKAERMMYGESSMTHAMVISAVS-IDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKE 320
+KAER+ +GES MTHAM +AVS D + TKWRVENSWGE+ HKGY+ MT WF E
Sbjct: 357 NKAERLTFGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTDEWFSE 416
Query: 321 YVFEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMGTLA 376
YV+EVVV D+K+VP VL V QEP ILPAWDPMG LA
Sbjct: 417 YVYEVVV-------------------DRKHVPEEVLAVLEQEPIILPAWDPMGALA 453
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKNCL 85
DK+ERC F+L+ V+TA+R EP DGRLV FL+ +P DGGQWDMLVN++ +G++PK C
Sbjct: 105 DKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCF 164
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 12/70 (17%)
Query: 131 YNNQPVELLMKLAAESIKNNEAVWFGCE-----NSRIRI----IYNNQPVELLMKLAAES 181
YNNQP++ L K+ A SIK+ EAVWFGC+ NS++ + +Y++ EL+ ++ ++
Sbjct: 299 YNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDH---ELVFGVSLKN 355
Query: 182 IKNNEAVWFG 191
+ E + FG
Sbjct: 356 MNKAERLTFG 365
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 91 RIIYNNQPVELLMKLAAESIKNNEAVWFGCE 121
+ +YNNQP++ L K+ A SIK+ EAVWFGC+
Sbjct: 296 KTLYNNQPIDFLKKMVAASIKDGEAVWFGCD 326
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 1 MSKAERMMYGESSMTHAMVISAVS 24
M+KAER+ +GES MTHAM +AVS
Sbjct: 356 MNKAERLTFGESLMTHAMTFTAVS 379
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 117/176 (66%), Gaps = 23/176 (13%)
Query: 203 YNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLP-M 261
YNNQP++ L K+ A SIK+ EAVWFGC+V K F +KLGL+D+ +++ + VF VSL M
Sbjct: 299 YNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFG--VSLKNM 356
Query: 262 SKAERMMYGESSMTHAMVISAVS-IDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKE 320
+KAER+ +GES MTHAM +AVS D + TKWRVENSWGE+ HKGY+ MT WF E
Sbjct: 357 NKAERLTFGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTDEWFSE 416
Query: 321 YVFEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMGTLA 376
YV+EVVV D+K+VP VL V QEP ILPAWDPMG LA
Sbjct: 417 YVYEVVV-------------------DRKHVPEEVLAVLEQEPIILPAWDPMGALA 453
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKNCL 85
DK+ERC F+L+ V+TA+R EP DGRLV FL+ +P DGGQWDMLVN++ +G++PK C
Sbjct: 105 DKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCF 164
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 12/70 (17%)
Query: 131 YNNQPVELLMKLAAESIKNNEAVWFGCE-----NSRIRI----IYNNQPVELLMKLAAES 181
YNNQP++ L K+ A SIK+ EAVWFGC+ NS++ + +Y++ EL+ ++ ++
Sbjct: 299 YNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDH---ELVFGVSLKN 355
Query: 182 IKNNEAVWFG 191
+ E + FG
Sbjct: 356 MNKAERLTFG 365
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 91 RIIYNNQPVELLMKLAAESIKNNEAVWFGCE 121
+ +YNNQP++ L K+ A SIK+ EAVWFGC+
Sbjct: 296 KTLYNNQPIDFLKKMVAASIKDGEAVWFGCD 326
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 1 MSKAERMMYGESSMTHAMVISAVS 24
M+KAER+ +GES MTHAM +AVS
Sbjct: 356 MNKAERLTFGESLMTHAMTFTAVS 379
>pdb|1A6R|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a
Length = 471
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 19/175 (10%)
Query: 203 YNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLPMS 262
Y N E L KL + ++NN+AV+FG K K G+ D+E+ N+ A+ +LP
Sbjct: 316 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAI---GYNLPQQ 372
Query: 263 KAERMMYGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYV 322
KA R+ Y ES MTHAM+I+ +D+ ++ P ++RVENSWG++ G +MT +F+EY
Sbjct: 373 KASRIRYHESLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQKYFEEYC 432
Query: 323 FEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMGTLAQ 377
F++VVD +P + AS +EP +LP WDPMG LA+
Sbjct: 433 FQIVVDINELPKEL----------------ASKFTSGKEEPIVLPIWDPMGALAK 471
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKNC 84
DK+E+ N++L+ +V +A + +D RLV +L+ +P DGGQ+ M +NL+ +GL+PK+
Sbjct: 123 DKLEKANYFLDQIVSSA--DQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKDL 179
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 92 IIYNNQPVELLMKLAAESIKNNEAVWFGCEN 122
+IY N E L KL + ++NN+AV+FG
Sbjct: 314 VIYLNVDNETLSKLVVKRLQNNKAVFFGSHT 344
>pdb|1GCB|A Chain A, Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease
(Thiol)
Length = 454
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 19/175 (10%)
Query: 203 YNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLPMS 262
Y N E L KL + ++NN+AV+FG K K G+ D+E+ N+ A+ +LP
Sbjct: 299 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAI---GYNLPQQ 355
Query: 263 KAERMMYGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYV 322
KA R+ Y ES MTHAM+I+ +D+ ++ P ++RVENSWG++ G +MT +F+EY
Sbjct: 356 KASRIRYHESLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQKYFEEYC 415
Query: 323 FEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMGTLAQ 377
F++VVD +P + AS +EP +LP WDPMG LA+
Sbjct: 416 FQIVVDINELPKEL----------------ASKFTSGKEEPIVLPIWDPMGALAK 454
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKN 83
DK+E+ N++L+ +V +A + +D RLV +L+ +P DGGQ+ M +NL+ +GL+PK+
Sbjct: 106 DKLEKANYFLDQIVSSA--DQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKD 161
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 92 IIYNNQPVELLMKLAAESIKNNEAVWFGCEN 122
+IY N E L KL + ++NN+AV+FG
Sbjct: 297 VIYLNVDNETLSKLVVKRLQNNKAVFFGSHT 327
>pdb|3GCB|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDELTAK454
Length = 470
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 97/174 (55%), Gaps = 19/174 (10%)
Query: 203 YNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLPMS 262
Y N E L KL + ++NN+AV+FG K K G+ D+E+ N+ A+ +LP
Sbjct: 316 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAI---GYNLPQQ 372
Query: 263 KAERMMYGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYV 322
KA R+ Y ES MTHAM+I+ +D+ ++ P ++RVENSWG++ G +MT +F+EY
Sbjct: 373 KASRIRYHESLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQKYFEEYC 432
Query: 323 FEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMGTLA 376
F++VVD +P + AS +EP +LP WDPMG LA
Sbjct: 433 FQIVVDINELPKEL----------------ASKFTSGKEEPIVLPIWDPMGALA 470
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKNC 84
DK+E+ N++L+ +V +A + +D RLV +L+ +P DGGQ+ M +NL+ +GL+PK+
Sbjct: 123 DKLEKANYFLDQIVSSA--DQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKDL 179
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 92 IIYNNQPVELLMKLAAESIKNNEAVWFGCEN 122
+IY N E L KL + ++NN+AV+FG
Sbjct: 314 VIYLNVDNETLSKLVVKRLQNNKAVFFGSHT 344
>pdb|2E03|A Chain A, Crystal Structure Of Nq67e Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 97/174 (55%), Gaps = 19/174 (10%)
Query: 203 YNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLPMS 262
Y N E L KL + ++NN+AV+FG K K G+ D+E+ N+ A+ +LP
Sbjct: 303 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAI---GYNLPQQ 359
Query: 263 KAERMMYGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYV 322
KA R+ Y ES MTHAM+I+ +D+ ++ P ++RVENSWG++ G +MT +F+EY
Sbjct: 360 KASRIRYHESLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQKYFEEYC 419
Query: 323 FEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMGTLA 376
F++VVD +P + AS +EP +LP WDPMG LA
Sbjct: 420 FQIVVDINELPKEL----------------ASKFTSGKEEPIVLPIWDPMGALA 457
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKN 83
DK+E+ N++L+ +V +A + +D RLV +L+ +P DGGQ+ M +NL+ +GL+PK+
Sbjct: 110 DKLEKANYFLDQIVSSA--DQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKD 165
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 92 IIYNNQPVELLMKLAAESIKNNEAVWFGCEN 122
+IY N E L KL + ++NN+AV+FG
Sbjct: 301 VIYLNVDNETLSKLVVKRLQNNKAVFFGSHT 331
>pdb|2DZY|A Chain A, Crystal Structure Of N392a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 19/174 (10%)
Query: 203 YNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLPMS 262
Y N E L KL + ++NN+AV+FG K K G+ D+E+ N+ A+ +LP
Sbjct: 303 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAI---GYNLPQQ 359
Query: 263 KAERMMYGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYV 322
KA R+ Y ES MTHAM+I+ +D+ ++ P ++RVE SWG++ G +MT +F+EY
Sbjct: 360 KASRIRYHESLMTHAMLITGCHVDETSKLPLRYRVEASWGKDSGKDGLYVMTQKYFEEYC 419
Query: 323 FEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMGTLA 376
F++VVD +P + AS +EP +LP WDPMG LA
Sbjct: 420 FQIVVDINELPKEL----------------ASKFTSGKEEPIVLPIWDPMGALA 457
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKN 83
DK+E+ N++L+ +V +A + +D RLV +L+ +P DGGQ+ M +NL+ +GL+PK+
Sbjct: 110 DKLEKANYFLDQIVSSA--DQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKD 165
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 92 IIYNNQPVELLMKLAAESIKNNEAVWFGCEN 122
+IY N E L KL + ++NN+AV+FG
Sbjct: 301 VIYLNVDNETLSKLVVKRLQNNKAVFFGSHT 331
>pdb|2DZZ|A Chain A, Crystal Structure Of N392v Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 19/174 (10%)
Query: 203 YNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLPMS 262
Y N E L KL + ++NN+AV+FG K K G+ D+E+ N+ A+ +LP
Sbjct: 303 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAI---GYNLPQQ 359
Query: 263 KAERMMYGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYV 322
KA R+ Y ES MTHAM+I+ +D+ ++ P ++RVE SWG++ G +MT +F+EY
Sbjct: 360 KASRIRYHESLMTHAMLITGCHVDETSKLPLRYRVEVSWGKDSGKDGLYVMTQKYFEEYC 419
Query: 323 FEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMGTLA 376
F++VVD +P + AS +EP +LP WDPMG LA
Sbjct: 420 FQIVVDINELPKEL----------------ASKFTSGKEEPIVLPIWDPMGALA 457
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKN 83
DK+E+ N++L+ +V +A + +D RLV +L+ +P DGGQ+ M +NL+ +GL+PK+
Sbjct: 110 DKLEKANYFLDQIVSSA--DQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKD 165
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 92 IIYNNQPVELLMKLAAESIKNNEAVWFGCEN 122
+IY N E L KL + ++NN+AV+FG
Sbjct: 301 VIYLNVDNETLSKLVVKRLQNNKAVFFGSHT 331
>pdb|2E00|A Chain A, Crystal Structure Of N392l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 19/174 (10%)
Query: 203 YNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLPMS 262
Y N E L KL + ++NN+AV+FG K K G+ D+E+ N+ A+ +LP
Sbjct: 303 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAI---GYNLPQQ 359
Query: 263 KAERMMYGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYV 322
KA R+ Y ES MTHAM+I+ +D+ ++ P ++RVE SWG++ G +MT +F+EY
Sbjct: 360 KASRIRYHESLMTHAMLITGCHVDETSKLPLRYRVELSWGKDSGKDGLYVMTQKYFEEYC 419
Query: 323 FEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMGTLA 376
F++VVD +P + AS +EP +LP WDPMG LA
Sbjct: 420 FQIVVDINELPKEL----------------ASKFTSGKEEPIVLPIWDPMGALA 457
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKN 83
DK+E+ N++L+ +V +A + +D RLV +L+ +P DGGQ+ M +NL+ +GL+PK+
Sbjct: 110 DKLEKANYFLDQIVSSA--DQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKD 165
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 92 IIYNNQPVELLMKLAAESIKNNEAVWFGCEN 122
+IY N E L KL + ++NN+AV+FG
Sbjct: 301 VIYLNVDNETLSKLVVKRLQNNKAVFFGSHT 331
>pdb|2E01|A Chain A, Crystal Structure Of H369a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 19/174 (10%)
Query: 203 YNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLPMS 262
Y N E L KL + ++NN+AV+FG K K G+ D+E+ N+ A+ +LP
Sbjct: 303 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAI---GYNLPQQ 359
Query: 263 KAERMMYGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYV 322
KA R+ Y ES MT AM+I+ +D+ ++ P ++RVENSWG++ G +MT +F+EY
Sbjct: 360 KASRIRYHESLMTAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQKYFEEYC 419
Query: 323 FEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMGTLA 376
F++VVD +P + AS +EP +LP WDPMG LA
Sbjct: 420 FQIVVDINELPKEL----------------ASKFTSGKEEPIVLPIWDPMGALA 457
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKN 83
DK+E+ N++L+ +V +A + +D RLV +L+ +P DGGQ+ M +NL+ +GL+PK+
Sbjct: 110 DKLEKANYFLDQIVSSA--DQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKD 165
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 92 IIYNNQPVELLMKLAAESIKNNEAVWFGCEN 122
+IY N E L KL + ++NN+AV+FG
Sbjct: 301 VIYLNVDNETLSKLVVKRLQNNKAVFFGSHT 331
>pdb|2E02|A Chain A, Crystal Structure Of H369l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 19/174 (10%)
Query: 203 YNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLPMS 262
Y N E L KL + ++NN+AV+FG K K G+ D+E+ N+ A+ +LP
Sbjct: 303 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAI---GYNLPQQ 359
Query: 263 KAERMMYGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYV 322
KA R+ Y ES MT AM+I+ +D+ ++ P ++RVENSWG++ G +MT +F+EY
Sbjct: 360 KASRIRYHESLMTLAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQKYFEEYC 419
Query: 323 FEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMGTLA 376
F++VVD +P + AS +EP +LP WDPMG LA
Sbjct: 420 FQIVVDINELPKEL----------------ASKFTSGKEEPIVLPIWDPMGALA 457
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKN 83
DK+E+ N++L+ +V +A + +D RLV +L+ +P DGGQ+ M +NL+ +GL+PK+
Sbjct: 110 DKLEKANYFLDQIVSSA--DQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKD 165
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 92 IIYNNQPVELLMKLAAESIKNNEAVWFGCEN 122
+IY N E L KL + ++NN+AV+FG
Sbjct: 301 VIYLNVDNETLSKLVVKRLQNNKAVFFGSHT 331
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 274 MTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMT 314
+ HA++ I K + W ++NSWGE +KGYILM
Sbjct: 160 LNHAVLAVGYGIQKGNKH---WIIKNSWGESWGNKGYILMA 197
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 273 SMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMT 314
++ HA++ I K + W ++NSWGE +KGYILM
Sbjct: 158 NLNHAVLAVGYGIQKGNKH---WIIKNSWGENWGNKGYILMA 196
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 273 SMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMT 314
++ HA++ I K + W ++NSWGE +KGYILM
Sbjct: 157 NLNHAVLAVGYGIQKGNKH---WIIKNSWGENWGNKGYILMA 195
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 273 SMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMT 314
++ HA++ I K + W ++NSWGE +KGYILM
Sbjct: 159 NLNHAVLAVGYGIQKGNKH---WIIKNSWGENWGNKGYILMA 197
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 273 SMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMT 314
++ HA++ I K + W ++NSWGE +KGYILM
Sbjct: 161 NLNHAVLAVGYGIQKGNKH---WIIKNSWGENWGNKGYILMA 199
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 273 SMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMT 314
++ HA++ I K + W ++NSWGE +KGYILM
Sbjct: 258 NLNHAVLAVGYGIQKGNKH---WIIKNSWGENWGNKGYILMA 296
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 274 MTHAMVISAVSIDK-ETEEPTKWRVENSWGEEQNHKGYILMT 314
M H +++ + E+++ W V+NSWGEE GY+ M
Sbjct: 161 MDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMA 202
>pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I
Length = 192
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 207 PVELL-MKLAAESIKNNEAVWFGCEVSKRFAN----KLGLNDLEIHNFKAVFDSDVSLPM 261
P E++ + A +S K GC V +F + K L+ I N K SD+S +
Sbjct: 48 PSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSI 107
Query: 262 SKAERMMYGESSMTHAMVISAVSIDKE 288
+++ +++ ES A V+ IDK+
Sbjct: 108 ARSYDVLFNESVALRAFVL----IDKQ 130
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 45 GEPVDGRLVSFLMQSPNGDGGQWDMLVNL-IVNHGLMPKN 83
G PV G FL P G G W M L I+N G++P N
Sbjct: 1569 GNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGN 1608
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 45 GEPVDGRLVSFLMQSPNGDGGQWDMLVNL-IVNHGLMPKN 83
G PV G FL P G G W M L I+N G++P N
Sbjct: 1569 GNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGN 1608
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 273 SMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMT 314
++ HA++ I + W ++NSWGE + GYILM
Sbjct: 159 ALNHAVLAVGYGIQAGNKH---WIIKNSWGESWGNAGYILMA 197
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 45 GEPVDGRLVSFLMQSPNGDGGQWDMLVNL-IVNHGLMPKN 83
G PV G FL P G G W M L I+N G++P N
Sbjct: 1370 GNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGN 1409
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 274 MTHAMVISAVSIDK-ETEEPTKWRVENSWGEEQNHKGYILMT 314
M H +++ + E++ W V+NSWGEE GY+ M
Sbjct: 199 MDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 240
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 274 MTHAMVISAVSIDK-ETEEPTKWRVENSWGEEQNHKGYILMT 314
M H +++ + E++ W V+NSWGEE GY+ M
Sbjct: 161 MDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 202
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 274 MTHAMVISAVSIDK-ETEEPTKWRVENSWGEEQNHKGYILMT 314
M H +++ + E++ W V+NSWGEE GY+ M
Sbjct: 161 MDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 202
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 274 MTHAMVISAVSIDK-ETEEPTKWRVENSWGEEQNHKGYILMT 314
M H +++ + E++ W V+NSWGEE GY+ M
Sbjct: 161 MDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 202
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 274 MTHAMVISAVSIDK-ETEEPTKWRVENSWGEEQNHKGYILMT 314
M H +++ + E++ W V+NSWGEE GY+ M
Sbjct: 162 MDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 203
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 274 MTHAMVISAVSIDK-ETEEPTKWRVENSWGEEQNHKGYILMT 314
M H +++ + E++ W V+NSWGEE GY+ M
Sbjct: 161 MDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 202
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 274 MTHAMVISAVSIDK-ETEEPTKWRVENSWGEEQNHKGYILMT 314
M H +++ + E++ W V+NSWGEE GY+ M
Sbjct: 162 MDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 203
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 274 MTHAMVISAVSIDKETEEPTK-WRVENSWGEEQNHKGYILMT 314
M H +++ + + K W V+NSWGEE GY+ M
Sbjct: 253 MDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMA 294
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 274 MTHAMVISAVSIDK-ETEEPTKWRVENSWGEEQNHKGYILMT 314
M H +++ + E++ W V+NSWGEE GY+ M
Sbjct: 257 MDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 298
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 21/103 (20%)
Query: 229 CEVSKRFANKLGLNDLE-----IHN--FKAVFDSDVSLPM--SKAERMMYGESSMT---- 275
C+VSK A + ++ E N KAV + VS+ + ++ Y E T
Sbjct: 98 CDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCG 157
Query: 276 ----HAMVISAVSIDKETEEPTK-WRVENSWGEEQNHKGYILM 313
H + I T + TK W V+NSWG E KGYI M
Sbjct: 158 TELDHGVAIVGYGT---TIDGTKYWTVKNSWGPEWGEKGYIRM 197
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 274 MTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMT 314
+ HAM++ ++ W V+NSWGEE GY+ M
Sbjct: 161 LNHAMLVVGYGFISNNQK--YWLVKNSWGEEWGMGGYVKMA 199
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 250 KAVFDSDVSLPMSKAER--MMYGESSMTHAMVISA----VSIDKETEEPTK-WRVENSWG 302
KAV + VS+ M A R +Y T + ISA + TE W V+NSWG
Sbjct: 125 KAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWIVKNSWG 184
Query: 303 EEQNHKGYI 311
+ GYI
Sbjct: 185 KNWGESGYI 193
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 272 SSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYVFEVVVDKKY 331
+ + H +++ DKE+++ W ++NSWG GY+ M +E +++D +
Sbjct: 163 TDLDHGVLLVGYGTDKESKKDF-WIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASF 221
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 262 SKAERMM-YG--ESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWF 318
++AER + Y E++ H I ++ D+E E + V+NSWG + G + +
Sbjct: 301 TQAERQLAYDNYETTDDHGXQIYGIAKDQEGNE--YYXVKNSWGTNSKYNGIWYASKAFV 358
Query: 319 KEYVFEVVVDKKYVPASV 336
+ +VV K +P ++
Sbjct: 359 RYKTXNIVVHKDALPKAI 376
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 262 SKAERMMYGESSMTHAMVISAVS--IDKETEEPTKWRVENSWGEEQNHKGYI 311
K + + G+ + HA+ I ++ E E+ + W V NSWG +GY
Sbjct: 186 GKKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYF 237
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 241 LNDLEIHNFKAVFDSDVSLPMSKAERMMYGE--------SSMTHAMVISAVSIDKETEEP 292
N+ + AV S V++ S A+ Y + + H + I +
Sbjct: 114 CNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY-------QA 166
Query: 293 TKWRVENSWGEEQNHKGYILM 313
W V NSWG KGYI M
Sbjct: 167 NYWIVRNSWGRYWGEKGYIRM 187
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 262 SKAERMMYGESSMTHAMVISAVS--IDKETEEPTKWRVENSWGEEQNHKGYI 311
K + + G+ + HA+ I ++ E E+ + W V NSWG +GY
Sbjct: 185 GKKVQNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYF 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,235,897
Number of Sequences: 62578
Number of extensions: 387029
Number of successful extensions: 965
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 94
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)