RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17191
(377 letters)
>gnl|CDD|202517 pfam03051, Peptidase_C1_2, Peptidase C1-like family. This family
is closely related to the Peptidase_C1 family pfam00112,
containing several prokaryotic and eukaryotic
aminopeptidases and bleomycin hydrolases.
Length = 438
Score = 226 bits (577), Expect = 4e-70
Identities = 81/174 (46%), Positives = 110/174 (63%), Gaps = 22/174 (12%)
Query: 200 RIIYNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSL 259
++Y N P+E+L KLA +K+ EAVWFGC+V K+ K G+ D +++ + +F V L
Sbjct: 287 PVLYLNVPMEVLKKLAIAQLKDGEAVWFGCDVGKQMDRKTGILDTNLYDLEQLFG--VDL 344
Query: 260 PMSKAERMMYGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFK 319
MSKA+R+ YGES MTHAMV++ V D + +PTKW+VENSWG++ KGY +M+ WF
Sbjct: 345 KMSKADRLDYGESLMTHAMVLTGVDED-DDGKPTKWKVENSWGDDSGKKGYFVMSDEWF- 402
Query: 320 EYVFEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMG 373
DEYV++VVVDKKY+P VL QEP +LP WDPMG
Sbjct: 403 ------------------DEYVYQVVVDKKYLPEEVLAALEQEPIVLPPWDPMG 438
Score = 92.0 bits (229), Expect = 2e-20
Identities = 31/59 (52%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKNC 84
DK+E+ N++L ++ETA EP+D RLV FL+ +P DGGQWDMLVNL+ +G++PK
Sbjct: 100 DKLEKANYFLENIIETA--DEPLDSRLVQFLLATPQQDGGQWDMLVNLVEKYGVVPKKV 156
Score = 53.5 bits (129), Expect = 7e-08
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 128 RIIYNNQPVELLMKLAAESIKNNEAVWFGCENSR 161
++Y N P+E+L KLA +K+ EAVWFGC+ +
Sbjct: 287 PVLYLNVPMEVLKKLAIAQLKDGEAVWFGCDVGK 320
Score = 53.1 bits (128), Expect = 1e-07
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 91 RIIYNNQPVELLMKLAAESIKNNEAVWFGCE 121
++Y N P+E+L KLA +K+ EAVWFGC+
Sbjct: 287 PVLYLNVPMEVLKKLAIAQLKDGEAVWFGCD 317
Score = 49.6 bits (119), Expect = 1e-06
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 1 MSKAERMMYGESSMTHAMVISAVSIDK 27
MSKA+R+ YGES MTHAMV++ V D
Sbjct: 346 MSKADRLDYGESLMTHAMVLTGVDEDD 372
>gnl|CDD|238328 cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database
nomenclature); composed of eukaryotic bleomycin
hydrolases (BH) and bacterial aminopeptidases C (pepC).
The proteins of this subfamily contain a large insert
relative to the C1A peptidase (papain) subfamily. BH is
a cysteine peptidase that detoxifies bleomycin by
hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. Bleomycin, a glycopeptide derived from the
fungus Streptomyces verticullus, is an effective
anticancer drug due to its ability to induce DNA strand
breaks. Human BH is the major cause of tumor cell
resistance to bleomycin chemotherapy, and is also
genetically linked to Alzheimer's disease. In addition
to its peptidase activity, the yeast BH (Gal6) binds DNA
and acts as a repressor in the Gal4 regulatory system.
BH forms a hexameric ring barrel structure with the
active sites imbedded in the central channel. The
bacterial homolog of BH, called pepC, is a cysteine
aminopeptidase possessing broad specificity. Although
its crystal structure has not been solved, biochemical
analysis shows that pepC also forms a hexamer. .
Length = 437
Score = 220 bits (563), Expect = 5e-68
Identities = 78/173 (45%), Positives = 109/173 (63%), Gaps = 22/173 (12%)
Query: 201 IIYNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLP 260
I+Y N P+++L K A +K+ E VWFGC+V K K G+ D ++ +++ +F +
Sbjct: 287 ILYLNVPMDVLKKAAIAQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFG--IDFG 344
Query: 261 MSKAERMMYGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKE 320
++KAER+ YGES MTHAMV++ V +D E +P KW+VENSWGE+ KGY +M+ WF
Sbjct: 345 LNKAERLDYGESLMTHAMVLTGVDLD-EDGKPVKWKVENSWGEKVGKKGYFVMSDDWF-- 401
Query: 321 YVFEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMG 373
DEYV++VVVDKKY+P VLD+ QEP +LP WDPMG
Sbjct: 402 -----------------DEYVYQVVVDKKYLPEEVLDLLKQEPIVLPPWDPMG 437
Score = 96.9 bits (242), Expect = 4e-22
Identities = 33/59 (55%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKNC 84
DK+E+ N++L ++ETA EP+D RLV FL+ +P DGGQWDMLVNLI +GL+PK+
Sbjct: 99 DKLEKANYFLENIIETA--DEPLDDRLVQFLLANPQNDGGQWDMLVNLIEKYGLVPKSV 155
Score = 51.4 bits (124), Expect = 3e-07
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 1 MSKAERMMYGESSMTHAMVISAVSID 26
++KAER+ YGES MTHAMV++ V +D
Sbjct: 345 LNKAERLDYGESLMTHAMVLTGVDLD 370
Score = 48.4 bits (116), Expect = 4e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 92 IIYNNQPVELLMKLAAESIKNNEAVWFGCE 121
I+Y N P+++L K A +K+ E VWFGC+
Sbjct: 287 ILYLNVPMDVLKKAAIAQLKDGEPVWFGCD 316
Score = 48.4 bits (116), Expect = 4e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 129 IIYNNQPVELLMKLAAESIKNNEAVWFGCE 158
I+Y N P+++L K A +K+ E VWFGC+
Sbjct: 287 ILYLNVPMDVLKKAAIAQLKDGEPVWFGCD 316
>gnl|CDD|226107 COG3579, PepC, Aminopeptidase C [Amino acid transport and
metabolism].
Length = 444
Score = 179 bits (455), Expect = 4e-52
Identities = 68/177 (38%), Positives = 103/177 (58%), Gaps = 22/177 (12%)
Query: 201 IIYNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVSLP 260
+ Y N +E L KLA + ++ E VWFGC+V + K G+ D +I+++++ ++L
Sbjct: 290 VKYLNVDMERLKKLAIKQMQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLG--INLT 347
Query: 261 MSKAERMMYGESSMTHAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKE 320
KA R+ YGES MTHAMV++ V +D ET P +W+VENSWG++ KGY + + W
Sbjct: 348 QDKAGRLDYGESLMTHAMVLTGVDLD-ETGNPLRWKVENSWGKDVGKKGYFVASDAWM-- 404
Query: 321 YVFEVVVDKKYVPASVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPAWDPMGTLAQ 377
DEY +++VVDKK++P L + +EP +L WDPMG LA+
Sbjct: 405 -----------------DEYTYQIVVDKKFLPKEELAAYEEEPIVLAPWDPMGALAK 444
Score = 74.4 bits (183), Expect = 1e-14
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 26 DKIERCNFYLNTVVETARRGEPVDGRLVSFLMQSPNGDGGQWDMLVNLIVNHGLMPKNC 84
DK+E+ N++L ++ETA + +D RLVSFL+ +P DGGQWDM V+L +G++PK+
Sbjct: 102 DKLEKANWFLEQIIETA--DQELDSRLVSFLLATPQQDGGQWDMFVSLFEKYGVVPKSV 158
Score = 43.6 bits (103), Expect = 1e-04
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 1 MSKAERMMYGESSMTHAMVISAVSID 26
KA R+ YGES MTHAMV++ V +D
Sbjct: 348 QDKAGRLDYGESLMTHAMVLTGVDLD 373
Score = 41.7 bits (98), Expect = 4e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 92 IIYNNQPVELLMKLAAESIKNNEAVWFGCE 121
+ Y N +E L KLA + ++ E VWFGC+
Sbjct: 290 VKYLNVDMERLKKLAIKQMQAGETVWFGCD 319
Score = 41.7 bits (98), Expect = 4e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 129 IIYNNQPVELLMKLAAESIKNNEAVWFGCE 158
+ Y N +E L KLA + ++ E VWFGC+
Sbjct: 290 VKYLNVDMERLKKLAIKQMQAGETVWFGCD 319
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 42.1 bits (99), Expect = 2e-04
Identities = 27/130 (20%), Positives = 40/130 (30%), Gaps = 24/130 (18%)
Query: 199 IRIIYNNQPVELLMKLAAESIKNNEAVWFGCEVSKRFANKLGLNDLEIHNFKAVFDSDVS 258
R + N + +K A + V G +V F I + V+
Sbjct: 117 YRRVLKNNIED--IKEA---LAKGGPVVAGFDVYSGFDRLKE----GIIYEEIVYLL--- 164
Query: 259 LPMSKAERMMYGESSMTHAMVISAVSIDKETEEPTK-WRVENSWGEEQNHKGYILMTSPW 317
HA+VI V D E + V+NSWG + GY ++
Sbjct: 165 ---------YEDGDLGGHAVVI--VGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213
Query: 318 FKEYVFEVVV 327
E F V
Sbjct: 214 VYEMTFGANV 223
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 31.2 bits (71), Expect = 0.70
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 276 HAMVISAVSIDKETEEPTKWRVENSWGEEQNHKGY 310
HA+++ D+ E W V+NSWG KGY
Sbjct: 188 HAVLLVGWGEDEIKGEKY-WIVKNSWGSSWGEKGY 221
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 30.4 bits (68), Expect = 1.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 289 TEEPTKWRVENSWGEEQNHKGYILMT 314
T E W ++NSWGE+ KGY+ +T
Sbjct: 298 TGEVPYWVIKNSWGEDWGEKGYVRVT 323
>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related
proteins of the D-specific 2-hydroxy dehydrogenase
family. This group contains a variety of proteins
variously identified as glycerate dehydrogenase (GDH,
also known as hydroxypyruvate reductase) and other
enzymes of the 2-hydroxyacid dehydrogenase family. GDH
catalyzes the reversible reaction of (R)-glycerate +
NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid
dehydrogenases catalyze the conversion of a wide variety
of D-2-hydroxy acids to their corresponding keto acids.
The general mechanism is (R)-lactate + acceptor to
pyruvate + reduced acceptor. Formate/glycerate and
related dehydrogenases of the D-specific 2-hydroxyacid
dehydrogenase superfamily include groups such as formate
dehydrogenase, glycerate dehydrogenase, L-alanine
dehydrogenase, and S-adenosylhomocysteine hydrolase.
Despite often low sequence identity, these proteins
typically have a characteristic arrangement of 2 similar
subdomains of the alpha/beta Rossmann-fold NAD+ binding
form. The NAD+ binding domain is inserted within the
linear sequence of the mostly N-terminal catalytic
domain, which has a similar domain structure to the
internal NAD binding domain. Structurally, these domains
are connected by extended alpha helices and create a
cleft in which NAD is bound, primarily to the C-terminal
portion of the 2nd (internal) domain. Some related
proteins have similar structural subdomain but with a
tandem arrangement of the catalytic and NAD-binding
subdomains in the linear sequence. While many members of
this family are dimeric, alanine DH is hexameric and
phosphoglycerate DH is tetrameric.
Length = 306
Score = 29.4 bits (67), Expect = 3.4
Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 355 VLDVFNQEPTILPAWDP 371
VLDVF QEP LPA P
Sbjct: 245 VLDVFEQEP--LPADHP 259
>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes
RhoA, RhoB and RhoC. The RhoA subfamily consists of
RhoA, RhoB, and RhoC. RhoA promotes the formation of
stress fibers and focal adhesions, regulating cell
shape, attachment, and motility. RhoA can bind to
multiple effector proteins, thereby triggering different
downstream responses. In many cell types, RhoA mediates
local assembly of the contractile ring, which is
necessary for cytokinesis. RhoA is vital for muscle
contraction; in vascular smooth muscle cells, RhoA plays
a key role in cell contraction, differentiation,
migration, and proliferation. RhoA activities appear to
be elaborately regulated in a time- and space-dependent
manner to control cytoskeletal changes. Most Rho
proteins contain a lipid modification site at the
C-terminus, with a typical sequence motif CaaX, where a
= an aliphatic amino acid and X = any amino acid. Lipid
binding is essential for membrane attachment, a key
feature of most Rho proteins. RhoA and RhoC are observed
only in geranylgeranylated forms; however, RhoB can be
present in palmitoylated, farnesylated, and
geranylgeranylated forms. RhoA and RhoC are highly
relevant for tumor progression and invasiveness;
however, RhoB has recently been suggested to be a tumor
suppressor. Due to the presence of truncated sequences
in this CD, the lipid modification site is not available
for annotation.
Length = 175
Score = 28.2 bits (63), Expect = 5.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 331 YVPASVLDEYVFEVVVDKKYVPASVLDVFNQE 362
YVP +V + YV ++ VD K V ++ D QE
Sbjct: 30 YVP-TVFENYVADIEVDGKQVELALWDTAGQE 60
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 27.9 bits (63), Expect = 6.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 295 WRVENSWGEEQNHKGYILM 313
W V+NSWG + GY +
Sbjct: 139 WIVKNSWGTDWGENGYFRI 157
>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase
NAD-binding and catalytic domains.
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene
PdxB), a D-specific 2-hydroxyacid dehydrogenase family
member, catalyzes the NAD-dependent oxidation of
erythronate-4-phosphate, which is followed by
transamination to form 4-hydroxy-L-threonine-4-phosphate
within the de novo biosynthesis pathway of vitamin B6.
D-Erythronate-4-phosphate dehydrogenase has the common
architecture shared with D-isomer specific 2-hydroxyacid
dehydrogenases but contains an additional C-terminal
dimerization domain in addition to an NAD-binding domain
and the "lid" domain. The lid domain corresponds to the
catalytic domain of phosphoglycerate dehydrogenase and
other proteins of the D-isomer specific 2-hydroxyacid
dehydrogenase family, which include groups such as
formate dehydrogenase, glycerate dehydrogenase,
L-alanine dehydrogenase, and S-adenosylhomocysteine
hydrolase. Despite often low sequence identity, these
proteins typically have a characteristic arrangement of
2 similar subdomains of the alpha/beta Rossmann fold
NAD+ binding form. The NAD+ binding domain is inserted
within the linear sequence of the mostly N-terminal
catalytic domain, which has a similar domain structure
to the internal NAD binding domain. Structurally, these
domains are connected by extended alpha helices and
create a cleft in which NAD is bound, primarily to the
C-terminal portion of the 2nd (internal) domain. Some
related proteins have similar structural subdomain but
with a tandem arrangement of the catalytic and
NAD-binding subdomains in the linear sequence.
Length = 343
Score = 28.3 bits (64), Expect = 7.8
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 335 SVLDEYVFEVVVDKKYVPASVLDVFNQEPTILPA 368
+V+D ++ + VLDV+ EP I
Sbjct: 209 AVIDNQALLALLQRGKDLRVVLDVWENEPEIDLE 242
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 28.5 bits (63), Expect = 8.2
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 17/87 (19%)
Query: 270 GESSMTHAMVISAVS--IDKETEEPTKWRVENSWGEEQNHKGYILMTSPWFKEYVFEVVV 327
G+ + HA+ I I+ E E+ + W V NSWG+ +GY FK V
Sbjct: 717 GDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGY-------FK-------V 762
Query: 328 DKKYVPASVLDEYVFEVVVDKKYVPAS 354
D Y P+ D ++ VV+ +P +
Sbjct: 763 D-MYGPSHCEDNFIHSVVIFNIDLPKN 788
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 27.5 bits (62), Expect = 9.0
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 289 TEEPTK-WRVENSWGEEQNHKGYILM 313
TE W V+NSWG + GY +
Sbjct: 171 TENGVPYWIVKNSWGTDWGENGYFRI 196
>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid
dehydrogenase. 2-Hydroxyacid dehydrogenases catalyze
the conversion of a wide variety of D-2-hydroxy acids to
their corresponding keto acids. The general mechanism is
(R)-lactate + acceptor to pyruvate + reduced acceptor.
Formate/glycerate and related dehydrogenases of the
D-specific 2-hydroxyacid dehydrogenase superfamily
include groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomains but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. While many members of this family are dimeric,
alanine DH is hexameric and phosphoglycerate DH is
tetrameric. Formate dehydrogenase (FDH) catalyzes the
NAD+-dependent oxidation of formate ion to carbon
dioxide with the concomitant reduction of NAD+ to NADH.
FDHs of this family contain no metal ions or prosthetic
groups. Catalysis occurs though direct transfer of the
hydride ion to NAD+ without the stages of acid-base
catalysis typically found in related dehydrogenases.
FDHs are found in all methylotrophic microorganisms in
energy production and in the stress responses of plants.
Length = 313
Score = 27.9 bits (63), Expect = 9.9
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 6/20 (30%)
Query: 355 VLDVFNQEPTILPA----WD 370
LDVF +EP LPA WD
Sbjct: 248 ALDVFEEEP--LPADSPLWD 265
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.403
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,128,264
Number of extensions: 1854572
Number of successful extensions: 1547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1533
Number of HSP's successfully gapped: 39
Length of query: 377
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 279
Effective length of database: 6,590,910
Effective search space: 1838863890
Effective search space used: 1838863890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)